Fbxo17 (F-box protein 17) - Rat Genome Database

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Gene: Fbxo17 (F-box protein 17) Rattus norvegicus
Analyze
Symbol: Fbxo17
Name: F-box protein 17
RGD ID: 1308308
Description: Predicted to enable carbohydrate binding activity. Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in ERAD pathway; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and glycoprotein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human FBXO17 (F-box protein 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: F-box only protein 17; Fbg4; Fbx17; Fbxo26; LOC292757
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8193,129,776 - 93,151,983 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl193,129,849 - 93,151,981 (+)EnsemblGRCr8
mRatBN7.2184,002,276 - 84,024,455 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,002,267 - 84,024,453 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx189,418,901 - 89,434,363 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0197,877,887 - 97,893,298 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0191,174,755 - 91,190,219 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0186,903,762 - 86,919,238 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,914,137 - 86,919,236 (+)Ensemblrn6Rnor6.0
Rnor_5.0188,084,918 - 88,100,373 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4183,828,307 - 83,843,719 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera178,401,477 - 78,416,889 (+)NCBICelera
RGSC_v3.1183,906,417 - 83,921,828 (+)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)
SCF ubiquitin ligase complex  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:10531037   PMID:15489334   PMID:15520277   PMID:18203720   PMID:19028597  


Genomics

Comparative Map Data
Fbxo17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8193,129,776 - 93,151,983 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl193,129,849 - 93,151,981 (+)EnsemblGRCr8
mRatBN7.2184,002,276 - 84,024,455 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,002,267 - 84,024,453 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx189,418,901 - 89,434,363 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0197,877,887 - 97,893,298 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0191,174,755 - 91,190,219 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0186,903,762 - 86,919,238 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,914,137 - 86,919,236 (+)Ensemblrn6Rnor6.0
Rnor_5.0188,084,918 - 88,100,373 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4183,828,307 - 83,843,719 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera178,401,477 - 78,416,889 (+)NCBICelera
RGSC_v3.1183,906,417 - 83,921,828 (+)NCBI
Cytogenetic Map1q21NCBI
FBXO17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381938,941,401 - 38,975,742 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1938,941,401 - 38,976,773 (-)Ensemblhg38GRCh38
GRCh371939,432,041 - 39,466,382 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,123,882 - 44,158,220 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1936,234,470 - 36,268,805 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1935,878,641 - 35,912,924 (-)NCBIHuRef
CHM1_11939,432,437 - 39,466,836 (-)NCBICHM1_1
T2T-CHM13v2.01941,745,371 - 41,779,692 (-)NCBIT2T-CHM13v2.0
Fbxo17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,416,176 - 28,437,570 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl728,416,229 - 28,437,569 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38728,716,749 - 28,738,145 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,716,804 - 28,738,144 (+)Ensemblmm10GRCm38
MGSCv37729,501,809 - 29,523,163 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36728,425,633 - 28,446,904 (+)NCBIMGSCv36mm8
Celera723,285,120 - 23,298,551 (+)NCBICelera
Cytogenetic Map7B1NCBI
cM Map716.9NCBI
Fbxo17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468591,650 - 598,544 (+)Ensembl
ChiLan1.0NW_004955468591,653 - 598,370 (+)NCBIChiLan1.0ChiLan1.0
FBXO17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22045,238,771 - 45,273,945 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11947,109,334 - 47,144,453 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01936,041,892 - 36,075,757 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11944,590,799 - 44,624,871 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1944,590,799 - 44,624,871 (-)EnsemblpanPan2panpan1.1
FBXO17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,161,226 - 114,188,354 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1114,161,051 - 114,188,356 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1113,562,792 - 113,590,778 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01114,760,868 - 114,788,221 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1114,760,749 - 114,787,383 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11114,318,765 - 114,346,749 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01113,951,952 - 113,979,923 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,947,660 - 114,975,657 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101974318
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,448,060 - 13,482,064 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366611,876,129 - 1,904,964 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl647,732,303 - 47,759,606 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1647,733,064 - 47,759,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,280,735 - 43,326,470 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,555,689 - 33,590,776 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl633,555,240 - 33,590,723 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607311,578,189 - 11,613,057 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479412,285,164 - 12,303,508 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462479412,275,383 - 12,303,527 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fbxo17
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12167,270,073 - 167,285,191 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fbxo17
381 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:260
Count of miRNA genes:182
Interacting mature miRNAs:192
Transcripts:ENSRNOT00000027006
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 12 65 161 71 70 39 86 39 6 319 183 10 140 75 90 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC079218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE120593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000027006   ⟹   ENSRNOP00000027006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl193,136,492 - 93,151,981 (+)Ensembl
mRatBN7.2 Ensembl184,019,354 - 84,024,453 (+)Ensembl
Rnor_6.0 Ensembl186,914,137 - 86,919,236 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102551   ⟹   ENSRNOP00000093850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl193,129,849 - 93,151,971 (+)Ensembl
mRatBN7.2 Ensembl184,002,267 - 84,024,453 (+)Ensembl
RefSeq Acc Id: NM_001013064   ⟹   NP_001013082
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,136,571 - 93,151,983 (+)NCBI
mRatBN7.2184,009,043 - 84,024,455 (+)NCBI
Rnor_6.0186,903,826 - 86,919,238 (+)NCBI
Rnor_5.0188,084,918 - 88,100,373 (+)NCBI
RGSC_v3.4183,828,307 - 83,843,719 (+)RGD
Celera178,401,477 - 78,416,889 (+)RGD
Sequence:
RefSeq Acc Id: XM_039104122   ⟹   XP_038960050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,129,776 - 93,151,983 (+)NCBI
mRatBN7.2184,002,276 - 84,024,455 (+)NCBI
RefSeq Acc Id: XM_039104125   ⟹   XP_038960053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,138,944 - 93,151,983 (+)NCBI
mRatBN7.2184,014,116 - 84,024,455 (+)NCBI
RefSeq Acc Id: XM_039104146   ⟹   XP_038960074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,147,318 - 93,151,983 (+)NCBI
mRatBN7.2184,019,790 - 84,024,455 (+)NCBI
RefSeq Acc Id: XM_039104166   ⟹   XP_038960094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,147,318 - 93,151,983 (+)NCBI
mRatBN7.2184,019,790 - 84,024,455 (+)NCBI
RefSeq Acc Id: XM_039104187   ⟹   XP_038960115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,147,318 - 93,151,983 (+)NCBI
mRatBN7.2184,019,790 - 84,024,455 (+)NCBI
RefSeq Acc Id: XM_063283332   ⟹   XP_063139402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,142,751 - 93,151,983 (+)NCBI
RefSeq Acc Id: XM_063283336   ⟹   XP_063139406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,142,751 - 93,151,983 (+)NCBI
RefSeq Acc Id: XM_063283338   ⟹   XP_063139408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,138,942 - 93,151,983 (+)NCBI
RefSeq Acc Id: XM_063283339   ⟹   XP_063139409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,129,776 - 93,151,983 (+)NCBI
RefSeq Acc Id: XM_063283343   ⟹   XP_063139413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,129,776 - 93,150,153 (+)NCBI
RefSeq Acc Id: XM_063283346   ⟹   XP_063139416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,129,776 - 93,151,983 (+)NCBI
RefSeq Acc Id: XM_063283351   ⟹   XP_063139421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,129,776 - 93,151,983 (+)NCBI
RefSeq Acc Id: XM_063283356   ⟹   XP_063139426
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,136,392 - 93,151,983 (+)NCBI
RefSeq Acc Id: XM_063283366   ⟹   XP_063139436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,129,776 - 93,151,983 (+)NCBI
RefSeq Acc Id: XR_010064589
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,129,776 - 93,150,219 (+)NCBI
RefSeq Acc Id: XR_010064590
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,129,776 - 93,149,697 (+)NCBI
RefSeq Acc Id: NP_001013082   ⟸   NM_001013064
- UniProtKB: Q6AY27 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000027006   ⟸   ENSRNOT00000027006
RefSeq Acc Id: XP_038960050   ⟸   XM_039104122
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960053   ⟸   XM_039104125
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960074   ⟸   XM_039104146
- Peptide Label: isoform X7
- UniProtKB: A6J9K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960094   ⟸   XM_039104166
- Peptide Label: isoform X7
- UniProtKB: A6J9K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960115   ⟸   XM_039104187
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AKV1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000093850   ⟸   ENSRNOT00000102551
RefSeq Acc Id: XP_063139409   ⟸   XM_063283339
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063139416   ⟸   XM_063283346
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063139421   ⟸   XM_063283351
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063139436   ⟸   XM_063283366
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063139413   ⟸   XM_063283343
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063139426   ⟸   XM_063283356
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063139408   ⟸   XM_063283338
- Peptide Label: isoform X2
- UniProtKB: Q6AY27 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063139402   ⟸   XM_063283332
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139406   ⟸   XM_063283336
- Peptide Label: isoform X1
Protein Domains
F-box   FBA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AY27-F1-model_v2 AlphaFold Q6AY27 1-250 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308308 AgrOrtholog
BioCyc Gene G2FUF-60229 BioCyc
Ensembl Genes ENSRNOG00000019942 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000027006 ENTREZGENE
  ENSRNOT00000027006.8 UniProtKB/Swiss-Prot
  ENSRNOT00000102551 ENTREZGENE
Gene3D-CATH 1.20.1280.50 UniProtKB/Swiss-Prot
  Galactose-binding domain-like UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7131902 IMAGE-MGC_LOAD
InterPro F-box-assoc_dom UniProtKB/Swiss-Prot
  F-box-like_dom_sf UniProtKB/Swiss-Prot
  F-box_dom UniProtKB/Swiss-Prot
  F-box_only UniProtKB/Swiss-Prot
  Galactose-bd-like_sf UniProtKB/Swiss-Prot
KEGG Report rno:292757 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94281 IMAGE-MGC_LOAD
NCBI Gene 292757 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 17 UniProtKB/Swiss-Prot
  PTHR12125 UniProtKB/Swiss-Prot
Pfam F-box-like UniProtKB/Swiss-Prot
  FBA UniProtKB/Swiss-Prot
PhenoGen Fbxo17 PhenoGen
PROSITE FBA UniProtKB/Swiss-Prot
  FBOX UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000019942 RatGTEx
SMART FBA UniProtKB/Swiss-Prot
  FBOX UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49785 UniProtKB/Swiss-Prot
  SSF81383 UniProtKB/Swiss-Prot
UniProt A0A8I6AKV1 ENTREZGENE, UniProtKB/TrEMBL
  A6J9K3 ENTREZGENE, UniProtKB/TrEMBL
  FBX17_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Fbxo17  F-box protein 17  Fbxo17  F-box only protein 17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Fbxo17  F-box only protein 17  Fbxo17_predicted  F-box only protein 17 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Fbxo17_predicted  F-box only protein 17 (predicted)      Symbol and Name status set to approved 70820 APPROVED