Pmepa1 (prostate transmembrane protein, androgen induced 1) - Rat Genome Database

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Gene: Pmepa1 (prostate transmembrane protein, androgen induced 1) Rattus norvegicus
Analyze
Symbol: Pmepa1
Name: prostate transmembrane protein, androgen induced 1
RGD ID: 1308255
Description: Predicted to enable R-SMAD binding activity; WW domain binding activity; and protein sequestering activity. Predicted to be involved in negative regulation of SMAD protein signal transduction and negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in endosome membrane. Predicted to be active in Golgi membrane and early endosome membrane. Orthologous to human PMEPA1 (prostate transmembrane protein, androgen induced 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC311676; Tmepai; transmembrane prostate androgen-induced protein; transmembrane, prostate androgen induced RNA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83182,430,193 - 182,478,649 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3182,430,193 - 182,478,649 (-)EnsemblGRCr8
mRatBN7.23162,011,884 - 162,060,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3162,012,751 - 162,060,454 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3165,812,187 - 165,818,999 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03174,316,169 - 174,322,997 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03172,052,965 - 172,059,777 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03171,295,630 - 171,342,662 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3171,294,856 - 171,342,646 (-)Ensemblrn6Rnor6.0
Rnor_5.03177,360,018 - 177,407,050 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43164,094,654 - 164,140,142 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3161,200,373 - 161,207,182 (-)NCBICelera
RGSC_v3.13164,003,347 - 164,051,086 (-)NCBI
Cytogenetic Map3q42NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-butoxyethanol  (ISO)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP,ISO)
benzene  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chloroacetaldehyde  (ISO)
chlorpromazine  (EXP)
chromium atom  (ISO)
chromium(6+)  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) chloride  (ISO)
coumestrol  (ISO)
curcumin  (ISO)
cyclosporin A  (EXP,ISO)
DDE  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
difenoconazole  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenofibrate  (EXP)
fentin acetate  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
heroin  (ISO)
ibuprofen  (EXP)
ifosfamide  (ISO)
indometacin  (ISO)
inulin  (ISO)
iron(2+) sulfate (anhydrous)  (ISO)
lead diacetate  (EXP,ISO)
lipopolysaccharide  (ISO)
manganese(II) chloride  (EXP)
menadione  (ISO)
metformin  (EXP)
methamphetamine  (EXP)
methimazole  (EXP)
N-Nitrosopyrrolidine  (ISO)
nitrofen  (EXP)
Nor-9-carboxy-delta9-THC  (ISO)
O-methyleugenol  (ISO)
orphenadrine  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
propiconazole  (EXP)
propylparaben  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
trovafloxacin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. EGF- and cell-cycle-regulated STAG1/PMEPA1/ERG1.2 belongs to a conserved gene family and is overexpressed and amplified in breast and ovarian cancer. Giannini G, etal., Mol Carcinog. 2003 Dec;38(4):188-200.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Characterization of a novel gene, STAG1/PMEPA1, upregulated in renal cell carcinoma and other solid tumors. Rae FK, etal., Mol Carcinog. 2001 Sep;32(1):44-53.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. PMEPA1, an androgen-regulated NEDD4-binding protein, exhibits cell growth inhibitory function and decreased expression during prostate cancer progression. Xu LL, etal., Cancer Res. 2003 Aug 1;63(15):4299-304.
Additional References at PubMed
PMID:20129061   PMID:24627487   PMID:28802000   PMID:30557043  


Genomics

Comparative Map Data
Pmepa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83182,430,193 - 182,478,649 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3182,430,193 - 182,478,649 (-)EnsemblGRCr8
mRatBN7.23162,011,884 - 162,060,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3162,012,751 - 162,060,454 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3165,812,187 - 165,818,999 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03174,316,169 - 174,322,997 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03172,052,965 - 172,059,777 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03171,295,630 - 171,342,662 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3171,294,856 - 171,342,646 (-)Ensemblrn6Rnor6.0
Rnor_5.03177,360,018 - 177,407,050 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43164,094,654 - 164,140,142 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3161,200,373 - 161,207,182 (-)NCBICelera
RGSC_v3.13164,003,347 - 164,051,086 (-)NCBI
Cytogenetic Map3q42NCBI
PMEPA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382057,648,396 - 57,711,472 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2057,648,392 - 57,711,536 (-)Ensemblhg38GRCh38
GRCh372056,223,452 - 56,286,528 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362055,656,858 - 55,719,947 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342055,656,859 - 55,719,947NCBI
Celera2052,963,835 - 53,026,924 (-)NCBICelera
Cytogenetic Map20q13.31NCBI
HuRef2053,005,433 - 53,067,708 (-)NCBIHuRef
CHM1_12056,124,658 - 56,187,819 (-)NCBICHM1_1
T2T-CHM13v2.02059,426,291 - 59,489,466 (-)NCBIT2T-CHM13v2.0
Pmepa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392173,066,251 - 173,118,329 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2173,066,251 - 173,118,326 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382173,224,458 - 173,276,731 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2173,224,458 - 173,276,533 (-)Ensemblmm10GRCm38
MGSCv372173,049,966 - 173,102,034 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362172,870,728 - 172,919,472 (-)NCBIMGSCv36mm8
Celera2179,192,066 - 179,202,057 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map295.85NCBI
Pmepa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554451,837,062 - 1,847,214 (+)Ensembl
ChiLan1.0NW_0049554451,837,084 - 1,847,214 (+)NCBIChiLan1.0ChiLan1.0
PMEPA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22163,400,110 - 63,462,420 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12063,393,229 - 63,455,537 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02053,989,384 - 54,052,151 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12055,267,089 - 55,329,349 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2055,267,089 - 55,329,347 (-)EnsemblpanPan2panpan1.1
PMEPA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12442,602,608 - 42,637,569 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2442,602,595 - 42,656,209 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2441,846,597 - 41,902,939 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02443,464,654 - 43,520,349 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2443,466,163 - 43,521,173 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12442,571,913 - 42,623,915 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02442,689,091 - 42,745,421 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02443,347,420 - 43,403,784 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pmepa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640182,866,513 - 182,877,162 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936530429,045 - 439,866 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936530429,059 - 439,847 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PMEPA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1757,999,287 - 58,054,118 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11757,999,287 - 58,054,329 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21765,159,876 - 65,215,002 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PMEPA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.126,403,358 - 6,465,958 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl26,404,515 - 6,465,982 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605054,461,088 - 54,523,559 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pmepa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474124,051,566 - 24,103,997 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474124,053,947 - 24,103,990 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pmepa1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15144,716,573 - 144,763,838 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:51
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000071853
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3141555229186555229Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141555229186555229Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3142898802187898802Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3141555229186555229Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3141555229186555229Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3141555229186555229Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3141555229186555229Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3139299381184299381Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3181611379189428310Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3161799270187311134Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3141555229186555229Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 88 59 6 352 188 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000071853   ⟹   ENSRNOP00000067298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3162,012,752 - 162,059,994 (-)Ensembl
Rnor_6.0 Ensembl3171,294,856 - 171,342,646 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113269   ⟹   ENSRNOP00000079568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3182,430,193 - 182,478,649 (-)Ensembl
mRatBN7.2 Ensembl3162,012,751 - 162,060,454 (-)Ensembl
RefSeq Acc Id: NM_001107807   ⟹   NP_001101277
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83182,430,193 - 182,438,131 (-)NCBI
mRatBN7.23162,011,884 - 162,019,822 (-)NCBI
Rnor_6.03171,295,671 - 171,302,498 (-)NCBI
Rnor_5.03177,360,018 - 177,407,050 (-)NCBI
RGSC_v3.43164,094,654 - 164,140,142 (-)RGD
Celera3161,200,373 - 161,207,182 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001413584   ⟹   NP_001400513
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83182,430,193 - 182,478,649 (-)NCBI
mRatBN7.23162,011,884 - 162,060,343 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001101277 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400513 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL85115 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000079568
  ENSRNOP00000079568.2
RefSeq Acc Id: NP_001101277   ⟸   NM_001107807
- Peptide Label: isoform 2 precursor
- UniProtKB: A6KL01 (UniProtKB/TrEMBL),   A0A8I5ZNU8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067298   ⟸   ENSRNOT00000071853
Ensembl Acc Id: ENSRNOP00000079568   ⟸   ENSRNOT00000113269
RefSeq Acc Id: NP_001400513   ⟸   NM_001413584
- Peptide Label: isoform 1
- UniProtKB: A0A8I5ZNU8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RCH9-F1-model_v2 AlphaFold M0RCH9 1-277 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692713
Promoter ID:EPDNEW_R3238
Type:initiation region
Name:Pmepa1_1
Description:prostate transmembrane protein, androgen induced 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03171,342,629 - 171,342,689EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308255 AgrOrtholog
BioCyc Gene G2FUF-46506 BioCyc
Ensembl Genes ENSRNOG00000050404 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000113269 ENTREZGENE
  ENSRNOT00000113269.2 UniProtKB/TrEMBL
InterPro TMEPAI/LRAD4 UniProtKB/TrEMBL
KEGG Report rno:311676 UniProtKB/TrEMBL
NCBI Gene 311676 ENTREZGENE
PANTHER PTHR16514 UniProtKB/TrEMBL
  PTHR16514:SF5 UniProtKB/TrEMBL
PhenoGen Pmepa1 PhenoGen
RatGTEx ENSRNOG00000050404 RatGTEx
UniProt A0A8I5ZNU8 ENTREZGENE, UniProtKB/TrEMBL
  A6KL01 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-05-27 Pmepa1  prostate transmembrane protein, androgen induced 1  Tmepai  transmembrane, prostate androgen induced RNA   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tmepai  transmembrane, prostate androgen induced RNA   Tmepai_predicted  transmembrane, prostate androgen induced RNA (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tmepai_predicted  transmembrane, prostate androgen induced RNA (predicted)      Symbol and Name status set to approved 70820 APPROVED