Advanced Search (OLGA)

Gene: Dnajb6 (DnaJ heat shock protein family (Hsp40) member B6) Rattus norvegicus

Analyze

Symbol:

Dnajb6

Name:

DnaJ heat shock protein family (Hsp40) member B6

RGD ID:

1308207

Description:

Predicted to enable several functions, including ATPase activator activity; identical protein binding activity; and unfolded protein binding activity. Predicted to be involved in several processes, including intermediate filament organization; negative regulation of inclusion body assembly; and protein folding. Predicted to act upstream of or within several processes, including chorion development; labyrinthine layer development; and negative regulation of DNA-templated transcription. Predicted to be located in Z disc; cytosol; and perinuclear region of cytoplasm. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 1. Orthologous to human DNAJB6 (DnaJ heat shock protein family (Hsp40) member B6); INTERACTS WITH 2,4-dinitrotoluene; 3-chloropropane-1,2-diol; 3-methylcholanthrene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

DnaJ (Hsp40) homolog, subfamily B, member 6; dnaJ homolog subfamily B member 6; heat shock protein J2; HSJ-2; hsp40 homolog; LOC108350642; LOC362293; MRJ; MSJ-1; uncharacterized LOC108350642

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Related Pseudogenes:

Dnajb6-ps10

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	6,010,081 - 6,232,052 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	6,128,070 - 6,232,005 (-)	Ensembl				GRCr8
mRatBN7.2	4	5,452,683 - 5,556,679 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	5,452,683 - 5,556,659 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	10,490,284 - 10,553,833 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	6,304,520 - 6,368,070 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	4,650,656 - 4,714,210 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	2,711,329 - 2,774,969 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	2,711,385 - 2,774,890 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	2,761,321 - 2,825,374 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	732,491 - 796,237 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	4,760,011 - 4,823,483 (+)	NCBI		Celera
RGSC_v3.1	4	732,490 - 796,237 (-)	NCBI
Cytogenetic Map	4	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant limb-girdle muscular dystrophy (ISO)

autosomal dominant limb-girdle muscular dystrophy type 1 (ISO)

Ehlers-Danlos syndrome classic type 1 (ISO)

Ehlers-Danlos syndrome classic type 2 (ISO)

genetic disease (ISO)

late onset Parkinson's disease (ISO)

limb-girdle muscular dystrophy (ISO)

Muscle Weakness (ISO)

myofibrillar myopathy (ISO)

Parkinson's disease (ISO)

Vacuolar Neuromyopathy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

1H-pyrazole (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3-chloropropane-1,2-diol (EXP)

3-methylcholanthrene (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

7,12-dimethyltetraphene (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

alpha-naphthoflavone (EXP)

alpha-pinene (ISO)

antimycin A (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bezafibrate (ISO)

bisphenol A (EXP)

bisphenol AF (ISO)

bisphenol F (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

captan (ISO)

carbamazepine (ISO)

chenodeoxycholic acid (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

CU-O LINKAGE (ISO)

cyclophosphamide (ISO)

cyclosporin A (ISO)

deoxycholic acid (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

diclofenac (ISO)

dioxygen (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (ISO)

fenofibrate (ISO)

fenthion (ISO)

folic acid (ISO)

folpet (ISO)

gallic acid (ISO)

genistein (ISO)

gentamycin (EXP)

glycochenodeoxycholic acid (ISO)

glycocholic acid (ISO)

glycodeoxycholic acid (ISO)

gold atom (ISO)

gold(0) (ISO)

isobutanol (ISO)

isoflavones (ISO)

ivermectin (ISO)

lead diacetate (ISO)

maneb (ISO)

methapyrilene (ISO)

methidathion (ISO)

motexafin gadolinium (ISO)

nickel dichloride (ISO)

nickel sulfate (ISO)

nonanoic acid (ISO)

ochratoxin A (EXP)

organoselenium compound (ISO)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

phlorizin (ISO)

piroxicam (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

tamoxifen (ISO)

temozolomide (ISO)

thioacetamide (EXP)

thiram (ISO)

toluene 2,4-diisocyanate (ISO)

triphenyl phosphate (EXP,ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc acetate (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (ISO)

chorio-allantoic fusion (ISO)

chorion development (ISO)

extracellular matrix organization (ISO)

intermediate filament organization (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of inclusion body assembly (ISO)

nervous system process (ISO)

protein folding (IBA,ISO)

protein localization to nucleus (ISO)

regulation of protein localization (ISO)

syncytiotrophoblast cell differentiation involved in labyrinthine layer development (ISO)

Cellular Component

cytoplasm (IBA,ISO)

cytosol (ISO)

nucleoplasm (ISO)

nucleus (IBA,IEA,ISO)

perinuclear region of cytoplasm (IEA,ISO)

Z disc (IEA,ISO)

Molecular Function

ATPase activator activity (ISO)

DNA binding (ISO)

heat shock protein binding (ISO)

Hsp70 protein binding (IEA)

identical protein binding (ISO)

protein binding (ISO)

protein folding chaperone (IBA)

protein-folding chaperone binding (IBA,ISO)

unfolded protein binding (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:10021343	PMID:10954706	PMID:11896048	PMID:16260608	PMID:18373498	PMID:19946888	PMID:20889486	PMID:21231916	PMID:21630459	PMID:21972064	PMID:22366786	PMID:26476842
PMID:30053369	PMID:35352799

Genomics

Comparative Map Data

Dnajb6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	6,010,081 - 6,232,052 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	6,128,070 - 6,232,005 (-)	Ensembl				GRCr8
mRatBN7.2	4	5,452,683 - 5,556,679 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	5,452,683 - 5,556,659 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	10,490,284 - 10,553,833 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	6,304,520 - 6,368,070 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	4,650,656 - 4,714,210 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	2,711,329 - 2,774,969 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	2,711,385 - 2,774,890 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	2,761,321 - 2,825,374 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	732,491 - 796,237 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	4,760,011 - 4,823,483 (+)	NCBI		Celera
RGSC_v3.1	4	732,490 - 796,237 (-)	NCBI
Cytogenetic Map	4	q11	NCBI

DNAJB6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	157,337,004 - 157,417,439 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	157,335,381 - 157,417,440 (+)	Ensembl			hg38	GRCh38
GRCh37	7	157,129,698 - 157,210,133 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	156,822,471 - 156,902,894 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	156,629,186 - 156,709,608	NCBI
Celera	7	151,556,757 - 151,637,136 (+)	NCBI		Celera
Cytogenetic Map	7	q36.3	NCBI
HuRef	7	150,859,705 - 150,940,410 (+)	NCBI		HuRef
CHM1_1	7	157,138,219 - 157,218,641 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	158,524,848 - 158,605,388 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	156,359,018 - 156,439,320 (+)	NCBI

Dnajb6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	29,940,896 - 29,991,476 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	29,940,686 - 30,023,132 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	29,735,898 - 29,786,478 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	29,735,688 - 29,818,134 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	30,062,438 - 30,113,018 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	30,066,727 - 30,117,265 (+)	NCBI		MGSCv36	mm8
Celera	5	27,252,388 - 27,302,966 (+)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI
cM Map	5	15.27	NCBI

Dnajb6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955579	240,058 - 298,592 (+)	Ensembl
ChiLan1.0	NW_004955579	240,058 - 298,592 (+)	NCBI	ChiLan1.0	ChiLan1.0

DNAJB6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	193,779,306 - 193,862,203 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	45,789,621 - 45,872,471 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	148,952,823 - 149,034,578 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	160,646,321 - 160,726,447 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	160,646,321 - 160,726,447 (+)	Ensembl			panPan2	panpan1.1

DNAJB6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	19,792,957 - 19,849,299 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	19,768,639 - 19,848,139 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	20,343,419 - 20,416,692 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	21,506,648 - 21,580,260 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	21,506,604 - 21,580,332 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	19,875,287 - 19,947,926 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	20,457,639 - 20,531,095 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	20,509,879 - 20,583,663 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dnajb6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	1,604,578 - 1,649,003 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936797	332,962 - 377,333 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936797	332,962 - 377,397 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAJB6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	1,444,739 - 1,499,887 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	18	1,444,737 - 1,499,904 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	1,404,687 - 1,481,281 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNAJB6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	125,455,782 - 125,544,495 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	125,469,957 - 125,544,820 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666072	21,697,024 - 21,781,071 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dnajb6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624800	1,175,679 - 1,234,951 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624800	1,174,703 - 1,234,661 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dnajb6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	158,692,658 - 158,757,583 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dnajb6
592 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	568
Count of miRNA genes:	277
Interacting mature miRNAs:	360
Transcripts:	ENSRNOT00000035996
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61408	Scl23	Serum cholesterol level QTL 23		0.0005	blood HDL phospholipid amount (VT:0010504)	serum high density lipoprotein phospholipid level (CMO:0001567)	4	1	28392287	Rat
631209	Bw2	Body weight QTL2	4.2		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	1	45429897	Rat
8552803	Bw144	Body weight QTL 144	16		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	1	35396961	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	1	35396961	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
9589046	Scfw2	Subcutaneous fat weight QTL 2	5.54	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	4	1	32668025	Rat
8552903	Pigfal2	Plasma insulin-like growth factor 1 level QTL 2	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	1	32668025	Rat
724557	Plsm1	Polydactyly-luxate syndrome (PLS) morphotypes QTL 1		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	4	1	28392287	Rat
9590100	Sffal4	Serum free fatty acids level QTL 4	7.36	0.05	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	4	1	32668025	Rat
61351	Bp33	Blood pressure QTL 33		0.0018	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	1	28392287	Rat
61415	Eae11	Experimental allergic encephalomyelitis QTL 11	2.9		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	4	1	40471598	Rat
1357341	Gluco5	Glucose level QTL 5	6.4		adipocyte free fatty acid secretion trait (VT:0010465)	absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)	4	1	34142783	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	5889999	50889999	Rat
1357343	Gluco4	Glucose level QTL 4		0.00002	adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	4	1	34142783	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	1	35396961	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	1	35396961	Rat
738021	Hcar13	Hepatocarcinoma resistance QTL 13	4.3		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	4	1	33538816	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	1	63900697	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5894575	57613242	Rat
61333	Gluco16	Glucose level QTL 16	4.3	0.00001	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	1	31106810	Rat
9589097	Slep11	Serum leptin concentration QTL 11	5.09	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	4	1	32668025	Rat

Markers in Region

RH132724

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	5,493,075 - 5,493,225 (-)	MAPPER	mRatBN7.2
Rnor_6.0	4	2,774,785 - 2,774,934	NCBI	Rnor6.0
Rnor_5.0	4	2,825,190 - 2,825,339	UniSTS	Rnor5.0
RGSC_v3.4	4	732,448 - 732,597	UniSTS	RGSC3.4
Celera	4	4,823,377 - 4,823,526	UniSTS
Cytogenetic Map	4	q11	UniSTS

RH143603

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Celera	4	4,823,242 - 4,823,425	UniSTS
Cytogenetic Map	4	q11	UniSTS

RH138190

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	5,539,536 - 5,539,706 (-)	MAPPER	mRatBN7.2
Rnor_6.0	4	2,728,307 - 2,728,476	NCBI	Rnor6.0
Rnor_5.0	4	2,778,712 - 2,778,881	UniSTS	Rnor5.0
RGSC_v3.4	4	778,906 - 779,075	UniSTS	RGSC3.4
Celera	4	4,776,942 - 4,777,111	UniSTS
Cytogenetic Map	4	q11	UniSTS

RH140222

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	1	230,524,704 - 230,524,892	UniSTS	Rnor5.0
Rnor_5.0	4	2,799,437 - 2,799,627	UniSTS	Rnor5.0
RGSC_v3.4	4	758,160 - 758,350	UniSTS	RGSC3.4
RGSC_v3.4	1	210,490,707 - 210,490,895	UniSTS	RGSC3.4
Celera	4	4,797,633 - 4,797,823	UniSTS
Celera	6	60,295,525 - 60,295,709	UniSTS
Celera	1	202,516,329 - 202,516,517	UniSTS
RH 3.4 Map	5	1155.1	UniSTS
Cytogenetic Map	4	q11	UniSTS
Cytogenetic Map	1	q43	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010065652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010065653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC078908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035996 ⟹ ENSRNOP00000041883

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	6,168,498 - 6,232,004 (-)	Ensembl
mRatBN7.2 Ensembl	4	5,493,128 - 5,556,655 (-)	Ensembl
Rnor_6.0 Ensembl	4	2,711,385 - 2,774,890 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095089 ⟹ ENSRNOP00000081472

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	5,497,793 - 5,556,659 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110545 ⟹ ENSRNOP00000080886

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	6,169,413 - 6,232,005 (-)	Ensembl
mRatBN7.2 Ensembl	4	5,494,035 - 5,556,655 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111440 ⟹ ENSRNOP00000078131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	5,518,653 - 5,556,659 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112530 ⟹ ENSRNOP00000079539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	6,128,070 - 6,231,996 (-)	Ensembl
mRatBN7.2 Ensembl	4	5,452,683 - 5,556,623 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118469 ⟹ ENSRNOP00000093872

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	6,211,175 - 6,232,005 (-)	Ensembl
mRatBN7.2 Ensembl	4	5,536,723 - 5,556,646 (-)	Ensembl

RefSeq Acc Id:

NM_001013209 ⟹ NP_001013227

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	6,168,497 - 6,232,004 (-)	NCBI
mRatBN7.2	4	5,493,119 - 5,556,631 (-)	NCBI
Rnor_6.0	4	2,711,385 - 2,774,891 (+)	NCBI
Rnor_5.0	4	2,761,321 - 2,825,374 (+)	NCBI
RGSC_v3.4	4	732,491 - 796,237 (-)	RGD
Celera	4	4,760,011 - 4,823,483 (+)	RGD

Sequence:

show sequence

GGAGACGCCGCCACCGCCACCAGCGCACTGTGCCAGAGCCGCGAGGAGACCGGCCGCCTGACTT
CCCCCCTCGCTGGCCGCCGCGTCCTCGGATTTGTTCCAACAGTCTGTTAAAACATGGTGGATTA
CTATGAAGTGCTGGGCGTGCAGAGACATGCCTCACCTGAGGACATTAAAAAGGCGTATCGAAAA
CAGGCACTCAAATGGCACCCAGACAAAAATCCTGAAAATAAAGAAGAAGCGGAGCGGAAATTCA
AACAAGTAGCTGAGGCATATGAAGTGTTATCGGATGCTAAAAAGCGGGACATCTATGACAAATA
TGGCAAAGAAGGATTAAATGGTGGTGGAGGAGGAGGTGGAAGTCATTTTGACAGTCCATTTGAG
TTTGGCTTCACATTCCGGAACCCAGATGATGTCTTCAGGGAATTTTTTGGTGGAAGGGACCCAT
TTTCATTTGACTTCTTTGAAGATCCATTTGATGACTTTTTTGGAAACCGAAGGGGTCCCCGAGG
AAGTAGAAGCCGAGGTGCTGGCTCCTTTTTCTCCGCCTTCAGTGGATTTCCTTCTTTTGGAAGT
GGATTTCCTGCTTTTGATACAGGCTTTACTCCATTCGGGTCACTAGGTCATGGGGGTCTCACTT
CATTTTCTTCAGCGTCATTTGGCGGCAGTGGAATGGGCAACTTCAAATCAATATCAACTTCAAC
TAAAATAGTTAATGGCAAAAAAATCACTACAAAGAGAATTGTGGAGAACGGTCAGGAAAGAGTA
GAAGTTGAAGAAGACGGACAGTTAAAGTCCCTGACGATAAATGGTGTGGCCGACGAGAACGCCC
TTGCAGAAGAATGCCGGCGGAGAGGCCAACCCACACCAGCTCTGGCCCCTGGCCCGGCCCCAGC
ACCAGCCCGGGTCCCCTCTCAGGCCCGACCCCCGACCCCAGCTCCCACCCCAGCTCCAGCCCAG
ACTCCAGCCCCTTCTGTCAGCACCCGCCCACAGAAGCCACCCAGGCCTGCCCCAACGGCCAAAC
TTGTGTCTAAAAGCAACTGGGAAGATGAAGAGCAGGACAGGCAGCGGGTTCCTGGCAACTGTGA
TGCCCCTATGACCTCAGCAGGGCTCAAAGAAGGTGGCAAGAGGAAGAAGCAGAAGCAGAAAGAG
GACTCGAAGAAGAAGAAGTCGACCAAAGGGAACCACTAGGCTGGACTTGGCGGCAGCCACAGCA
GCCGCTCTCGTGTGTGTGTTGCACACGCGCACGGCAGCGGCATCCTTTAAGTGCCGCCCAGGGT
CACTTCGCTTAGCAGGATTATGGACATGTGCCCACGGATCGGTAGGATTAGGGGCGTTGGAGAC
GGAGGCGACAATCCTGGGTGGCCTGTATAAGCTTGTGACACAGCCTCAGCCTTGTAACTCTGCT
TTTCCCCCAACACCAAATCCATAGCGTTTTCCTCGAGTCTTAAGGGTCTGCCTCATTGTTTTCA
GCAGCCCAAGCCCTGCTTTGAGCTCTGAGGTAGTTGTAGTTGTAGGAGTCCATAGGGTCCAGTA
GGAGCTGGGTTTGTGTTCATGACAGACTGCCTCCTGGTGGCGGTACAGTGCGCAGTTTTAAGTA
CAGTGGAACTTATGGTAAAGTAAGCTGTGCCTTGAGCCATGAGATGCTTTTGATTCAGGGTACT
CTGGCAACGTACAGGCCATCAGGAGCCACTTCAGATGTAGAGTCTTTCCTTATTTATTGTTCAA
CTTTTAATCTTCTCCAGGTAGTCAAAAATTGACACCAAATATAGTTTAGTTTTTGGAAAATCTC
ATCGTCTTGGAGAAATATTTGTCCTTTTTCAGTCAAAAGGTTTTGCTTAGCAATAGCATTTCTA
GTAATGATAGGTCAGTGTGCTACTGGCTATTTACACAAACACACAAGCACACGGAGGTGTGTGC
AAAATAATTAGCTCTGAAGCAGGAAGCTTGACCTCAGTTCTTTAAATTGCAAATAATGGCCCCT
TCACAAGCTTCATCCGGTCCCAACCCATGCCACGCTGTCACCTAACCTGTGGCTTGCACTGAGC
ACCAGGTAGTTCAGATGCCATCTCACTTCTGGGCTGCACGTGCCTCTTTGGGGCTGTGTTCCTT
TCTTTTGGCCATGAGGGTCTGTTGCTTGAACTTTGTCCCCTTGGCAGTGAGGATTTTGTAAAGG
GTGTTGGTGAGCTTGAGATGGGTCCAGCAGCATGGAAAGGGGAAGTTCTGTGAGTTATGGGCAC
TGCTGTAGCTAGGAGCTGGGACAGGGTTACCTGGGTTTTGAAGAAGTAACCATGAAGTGTTTGC
TGTGTTTGCTTGGTTTTGGTGGGAGGAGGTGTGGGCACTTATGGAGTGTGGATTGGTATTAATG
TGTGTTGTGGAAATGTGACCCTCAAGGAGGAATGTATTTTAGTGCTACTGACGTAAATAAAATG
TAAACGTCACTGAGTTCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006235864 ⟹ XP_006235926

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	6,168,502 - 6,232,040 (-)	NCBI
mRatBN7.2	4	5,497,648 - 5,556,671 (-)	NCBI
Rnor_6.0	4	2,711,333 - 2,770,362 (+)	NCBI
Rnor_5.0	4	2,761,321 - 2,825,374 (+)	NCBI

Sequence:

show sequence

GTGACGCACTTCCTGTTTGTTGTTGGAGAAAAGGAGAGAAAGGAAAGCGCGAGGAGACGCCGCC
ACCGCCACCAGCGCACTGTGCCAGAGCCGCGAGGAGACCGGCCGCCTGACTTCCCCCCTCGCTG
GCCGCCGCGTCCTCGGAGTAAGGGCTGAGGACCATGCTGAAGATGTTTTGAAAGAGTTATTTTC
TTTATGTGGATTTGTTCCAACAGTCTGTTAAAACATGGTGGATTACTATGAAGTGCTGGGCGTG
CAGAGACATGCCTCACCTGAGGACATTAAAAAGGCGTATCGAAAACAGGCACTCAAATGGCACC
CAGACAAAAATCCTGAAAATAAAGAAGAAGCGGAGCGGAAATTCAAACAAGTAGCTGAGGCATA
TGAAGTGTTATCGGATGCTAAAAAGCGGGACATCTATGACAAATATGGCAAAGAAGGATTAAAT
GGTGGTGGAGGAGGAGGTGGAAGTCATTTTGACAGTCCATTTGAGTTTGGCTTCACATTCCGGA
ACCCAGATGATGTCTTCAGGGAATTTTTTGGTGGAAGGGACCCATTTTCATTTGACTTCTTTGA
AGATCCATTTGATGACTTTTTTGGAAACCGAAGGGGTCCCCGAGGAAGTAGAAGCCGAGGTGCT
GGCTCCTTTTTCTCTGCCTTCAGTGGATTTCCTTCTTTTGGAAGTGGATTTCCTGCTTTTGATA
CAGGCTTTACTCCATTCGGGTCACTAGGTCATGGGGGTCTCACTTCATTTTCTTCAGCGTCATT
TGGCGGCAGTGGAATGGGCAACTTCAAATCAATATCAACTTCAACTAAAATAGTTAATGGCAAA
AAAATCACTACAAAGAGAATTGTGGAGAACGGTCAGGAAAGAGTAGAAGTTGAAGAAGACGGAC
AGTTAAAGTCCCTGACGATAAATGGTGTGGCCGACGAGAACGCCCTTGCAGAAGAATGCCGGCG
GAGAGGCCAACCCACACCAGCTCTGGCCCCTGGCCCGGCCCCAGCACCAGCCCGGGTCCCCTCT
CAGGCCCGACCCCCGACCCCAGCTCCCACCCCAGCTCCAGCCCAGACTCCAGCCCCTTCTGTCA
GCACCCGCCCACAGAAGCCACCCAGGCCTGCCCCAACGGCCAAACTTGTGTCTAAAAGCAACTG
GGAAGATGAAGAGCAGGACAGGCAGCGGGTTCCTGGCAACTGTGATGCCCCTATGACCTCAGCA
GGTGTGCAGAAGGGAGCTGGTGTGGAGCACCCCCAAAGTGTTTTGCCCCCAGATCCAGGTCAGC
AAGCACAGAAGTCAGGCCTATGTTGCTGCATTCTGACCTGAGCGGGCATGGGGTAGGTGCCTGG
CCTGCCGAGAAGGGACAGAGAGGATGGATACCTGTGTCCAGCTCCCCTCCCACAGCTGCTGTAT
GTATGGCCTAGCTGCGTGGCTCAAAGCCAGCCCCATGATTAAAACAGGGGTCCCAGTA

hide sequence

RefSeq Acc Id:

XM_039107734 ⟹ XP_038963662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	6,212,086 - 6,232,040 (-)	NCBI
mRatBN7.2	4	5,536,781 - 5,556,671 (-)	NCBI

RefSeq Acc Id:

XM_063286214 ⟹ XP_063142284

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	6,168,502 - 6,232,052 (-)	NCBI

RefSeq Acc Id:

XM_063286216 ⟹ XP_063142286

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	6,168,502 - 6,232,040 (-)	NCBI

RefSeq Acc Id:

XM_063286217 ⟹ XP_063142287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	6,168,502 - 6,232,040 (-)	NCBI

RefSeq Acc Id:

XM_063286218 ⟹ XP_063142288

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	6,026,552 - 6,232,040 (-)	NCBI

RefSeq Acc Id:

XM_063286219 ⟹ XP_063142289

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	6,010,081 - 6,232,040 (-)	NCBI

RefSeq Acc Id:

XM_063286220 ⟹ XP_063142290

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	6,194,025 - 6,232,033 (-)	NCBI

RefSeq Acc Id:

XR_010065652

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	6,128,070 - 6,232,040 (-)	NCBI

RefSeq Acc Id:

XR_010065653

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	6,128,070 - 6,232,040 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013227	(Get FASTA)	NCBI Sequence Viewer
	XP_006235926	(Get FASTA)	NCBI Sequence Viewer
	XP_038963662	(Get FASTA)	NCBI Sequence Viewer
	XP_063142284	(Get FASTA)	NCBI Sequence Viewer
	XP_063142286	(Get FASTA)	NCBI Sequence Viewer
	XP_063142287	(Get FASTA)	NCBI Sequence Viewer
	XP_063142288	(Get FASTA)	NCBI Sequence Viewer
	XP_063142289	(Get FASTA)	NCBI Sequence Viewer
	XP_063142290	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH78908	(Get FASTA)	NCBI Sequence Viewer
	EDL86429	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000041883
	ENSRNOP00000041883.2
	ENSRNOP00000079539
	ENSRNOP00000093872
GenBank Protein	Q6AYU3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013227 ⟸ NM_001013209

- UniProtKB:

Q6AYU3 (UniProtKB/Swiss-Prot), A0A8I5ZT18 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDI
YDKYGKEGLNGGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFDDFFGNRR
GPRGSRSRGAGSFFSAFSGFPSFGSGFPAFDTGFTPFGSLGHGGLTSFSSASFGGSGMGNFKSI
STSTKIVNGKKITTKRIVENGQERVEVEEDGQLKSLTINGVADENALAEECRRRGQPTPALAPG
PAPAPARVPSQARPPTPAPTPAPAQTPAPSVSTRPQKPPRPAPTAKLVSKSNWEDEEQDRQRVP
GNCDAPMTSAGLKEGGKRKKQKQKEDSKKKKSTKGNH

hide sequence

RefSeq Acc Id:	XP_006235926 ⟸ XM_006235864
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZT18 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVDYYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDI YDKYGKEGLNGGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFFEDPFDDFFGNRR GPRGSRSRGAGSFFSAFSGFPSFGSGFPAFDTGFTPFGSLGHGGLTSFSSASFGGSGMGNFKSI STSTKIVNGKKITTKRIVENGQERVEVEEDGQLKSLTINGVADENALAEECRRRGQPTPALAPG PAPAPARVPSQARPPTPAPTPAPAQTPAPSVSTRPQKPPRPAPTAKLVSKSNWEDEEQDRQRVP GNCDAPMTSAGVQKGAGVEHPQSVLPPDPGQQAQKSGLCCCILT hide sequence

Ensembl Acc Id:

ENSRNOP00000041883 ⟸ ENSRNOT00000035996

RefSeq Acc Id:	XP_038963662 ⟸ XM_039107734
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AML5 (UniProtKB/TrEMBL), A6KJM9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000081472 ⟸ ENSRNOT00000095089

Ensembl Acc Id:

ENSRNOP00000079539 ⟸ ENSRNOT00000112530

Ensembl Acc Id:

ENSRNOP00000078131 ⟸ ENSRNOT00000111440

Ensembl Acc Id:

ENSRNOP00000093872 ⟸ ENSRNOT00000118469

Ensembl Acc Id:

ENSRNOP00000080886 ⟸ ENSRNOT00000110545

RefSeq Acc Id:	XP_063142289 ⟸ XM_063286219
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5Y9Y0 (UniProtKB/TrEMBL), A6KJM7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142288 ⟸ XM_063286218
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5Y9Y0 (UniProtKB/TrEMBL), A6KJM7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142284 ⟸ XM_063286214
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZT18 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142287 ⟸ XM_063286217
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5Y9Y0 (UniProtKB/TrEMBL), A6KJM7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142286 ⟸ XM_063286216
- Peptide Label:	isoform X2
- UniProtKB:	Q6AYU3 (UniProtKB/Swiss-Prot), A0A8I5ZT18 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142290 ⟸ XM_063286220
- Peptide Label:	isoform X7

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYU3-F1-model_v2	AlphaFold	Q6AYU3	1-357	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692775

Promoter ID:

EPDNEW_R3299

Type:

initiation region

Name:

Dnajb6_1

Description:

DnaJ heat shock protein family member B6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	2,711,387 - 2,711,447	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308207	AgrOrtholog
BioCyc Gene	G2FUF-46173	BioCyc
Ensembl Genes	ENSRNOG00000010353	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000035996	ENTREZGENE
	ENSRNOT00000035996.4	UniProtKB/Swiss-Prot
	ENSRNOT00000112530	ENTREZGENE
	ENSRNOT00000118469	ENTREZGENE
Gene3D-CATH	1.10.287.110	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7113862	IMAGE-MGC_LOAD
InterPro	DnaJ_domain	UniProtKB/Swiss-Prot
	DnaJ_domain_CS	UniProtKB/Swiss-Prot
	DNJB2/6-like	UniProtKB/Swiss-Prot
	J_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:362293	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93667	IMAGE-MGC_LOAD
NCBI Gene	362293	ENTREZGENE
PANTHER	DNAJ HOMOLOG SUBFAMILY B MEMBER 2	UniProtKB/Swiss-Prot
	SIMILAR TO DNAJ HOMOLOG SUBFAMILY B MEMBER 6 (HEAT SHOCK PROTEIN J2) (HSJ-2) (MRJ) (MDJ4)	UniProtKB/Swiss-Prot
Pfam	DnaJ	UniProtKB/Swiss-Prot
PhenoGen	Dnajb6	PhenoGen
PRINTS	JDOMAIN	UniProtKB/Swiss-Prot
PROSITE	DNAJ_1	UniProtKB/Swiss-Prot
	DNAJ_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000010353	RatGTEx
SMART	DnaJ	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF46565	UniProtKB/Swiss-Prot
UniProt	A0A8I5Y9Y0	ENTREZGENE
	A0A8I5ZT18	ENTREZGENE
	A0A8I5ZTZ6_RAT	UniProtKB/TrEMBL
	A0A8I6AML5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G3F8_RAT	UniProtKB/TrEMBL
	A6KJM7	ENTREZGENE, UniProtKB/TrEMBL
	A6KJM9	ENTREZGENE, UniProtKB/TrEMBL
	DNJB6_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	LOC108350642	uncharacterized LOC108350642	Data merged from RGD:11496124	737654	PROVISIONAL
2016-08-02	LOC108350642	uncharacterized LOC108350642			Symbol and Name status set to provisional	70820	PROVISIONAL
2015-11-25	Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	Dnajb6	DnaJ (Hsp40) homolog, subfamily B, member 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Dnajb6	DnaJ (Hsp40) homolog, subfamily B, member 6	Dnajb6_predicted	DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Dnajb6_predicted	DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM