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Gene: Cnot1 (CCR4-NOT transcription complex, subunit 1) Rattus norvegicus

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Symbol:

Cnot1

Name:

CCR4-NOT transcription complex, subunit 1

RGD ID:

1308009

Description:

Predicted to enable armadillo repeat domain binding activity; molecular adaptor activity; and nuclear receptor binding activity. Predicted to contribute to poly(A)-specific ribonuclease activity. Predicted to be involved in several processes, including negative regulation of intracellular signal transduction; positive regulation of cytoplasmic mRNA processing body assembly; and regulation of gene expression. Predicted to be located in cytosol and nucleus. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Human ortholog(s) of this gene implicated in Vissers-Bodmer syndrome and holoprosencephaly 12. Orthologous to human CNOT1 (CCR4-NOT transcription complex subunit 1); PARTICIPATES IN microRNA pathway; RNA degradation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

adrenal gland protein AD-005; CCR4-NOT transcription complex subunit 1; hypothetical protein LOC291841; LOC291841; MGC116302; RGD1308009; similar to KIAA1007 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CNOT1 (CCR4-NOT transcription complex subunit 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cnot1 (CCR4-NOT transcription complex, subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cnot1 (CCR4-NOT transcription complex subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CNOT1 (CCR4-NOT transcription complex subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CNOT1 (CCR4-NOT transcription complex subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cnot1 (CCR4-NOT transcription complex subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CNOT1 (CCR4-NOT transcription complex subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CNOT1 (CCR4-NOT transcription complex subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cnot1 (CCR4-NOT transcription complex subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cnot1 (CCR4-NOT transcription complex subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	POU4F1 (POU class 4 homeobox 1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Cnot1 (CCR4-NOT transcription complex, subunit 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CNOT1 (CCR4-NOT transcription complex subunit 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cnot1 (CCR4-NOT transcription complex, subunit 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CDC39	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Not1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	let-711	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cnot1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	9,261,290 - 9,352,636 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	9,261,294 - 9,352,636 (+)	Ensembl				GRCr8
mRatBN7.2	19	9,255,190 - 9,346,574 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	9,255,194 - 9,346,574 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	9,223,744 - 9,315,039 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	9,990,569 - 10,081,870 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	9,276,876 - 9,368,186 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	9,668,186 - 9,761,605 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	9,668,186 - 9,761,605 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	9,652,472 - 9,746,683 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	9,712,024 - 9,803,182 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	9,151,859 - 9,241,563 (+)	NCBI		Celera
RGSC_v3.1	19	9,788,162 - 9,807,989 (+)	NCBI
Cytogenetic Map	19	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alopecia-mental retardation syndrome 4 (ISO)

genetic disease (ISO)

holoprosencephaly (ISO)

holoprosencephaly 12 (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

Preterm Intraventricular Hemorrhage (ISO)

Vissers-Bodmer syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

cyproterone acetate (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

fulvestrant (ISO)

ivermectin (ISO)

lead(0) (ISO)

methapyrilene (EXP)

methidathion (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

rimonabant (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

DNA-templated transcription (IEA)

miRNA-mediated post-transcriptional gene silencing (IEA,ISO)

negative regulation of intracellular estrogen receptor signaling pathway (IEA,ISO)

negative regulation of retinoic acid receptor signaling pathway (IEA,ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

negative regulation of translation (IEA,ISO)

nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (IBA)

positive regulation of cytoplasmic mRNA processing body assembly (IEA,ISO)

positive regulation of mRNA catabolic process (IEA,ISO)

positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (IEA,ISO)

positive regulation of nuclear-transcribed mRNA poly(A) tail shortening (IEA,ISO)

regulation of stem cell population maintenance (IEA,ISO)

regulation of translation (IEA)

regulatory ncRNA-mediated gene silencing (IEA)

trophectodermal cell differentiation (IEA,ISO)

Cellular Component

CCR4-NOT complex (IEA,ISO)

CCR4-NOT core complex (IBA,IEA)

cytoplasm (IEA)

nucleus (IEA)

P-body (IBA,IEA,ISO)

Molecular Function

armadillo repeat domain binding (IEA,ISO)

molecular adaptor activity (IBA,IEA,ISO)

nuclear estrogen receptor binding (IEA,ISO)

nuclear retinoic acid receptor binding (IEA,ISO)

poly(A)-specific ribonuclease activity (IEA,ISO)

protein binding (ISO)

protein domain specific binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

microRNA pathway (ISO)

RNA degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes.	Wahle E and Winkler GS, Biochim Biophys Acta. 2013 Jun-Jul;1829(6-7):561-70. doi: 10.1016/j.bbagrm.2013.01.003. Epub 2013 Jan 19.

Additional References at PubMed

PMID:12477932	PMID:16778766	PMID:19558367	PMID:19946888	PMID:20133598	PMID:21278420	PMID:21525035	PMID:21976065	PMID:22367759	PMID:22658674	PMID:22664934	PMID:22681889
PMID:22977175	PMID:23172285	PMID:23644599	PMID:24736845	PMID:24768540

Genomics

Comparative Map Data

Cnot1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	9,261,290 - 9,352,636 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	9,261,294 - 9,352,636 (+)	Ensembl				GRCr8
mRatBN7.2	19	9,255,190 - 9,346,574 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	9,255,194 - 9,346,574 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	9,223,744 - 9,315,039 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	9,990,569 - 10,081,870 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	9,276,876 - 9,368,186 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	9,668,186 - 9,761,605 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	9,668,186 - 9,761,605 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	9,652,472 - 9,746,683 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	19	9,712,024 - 9,803,182 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	19	9,151,859 - 9,241,563 (+)	NCBI		Celera
RGSC_v3.1	19	9,788,162 - 9,807,989 (+)	NCBI
Cytogenetic Map	19	p13	NCBI

CNOT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	58,519,951 - 58,629,826 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	58,519,951 - 58,629,885 (-)	Ensembl			hg38	GRCh38
GRCh37	16	58,553,855 - 58,663,730 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	57,111,356 - 57,221,251 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	16	43,052,843 - 43,163,048 (-)	NCBI		Celera
Cytogenetic Map	16	q21	NCBI
HuRef	16	44,421,846 - 44,532,633 (-)	NCBI		HuRef
CHM1_1	16	59,961,044 - 60,070,690 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	64,315,184 - 64,422,344 (-)	NCBI		T2T-CHM13v2.0

Cnot1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	96,445,559 - 96,534,741 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	96,446,079 - 96,534,092 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	95,718,931 - 95,808,113 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	95,719,451 - 95,807,464 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	98,243,351 - 98,331,366 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	98,608,580 - 98,696,595 (-)	NCBI		MGSCv36	mm8
Celera	8	100,030,369 - 100,118,172 (-)	NCBI		Celera
Cytogenetic Map	8	D1	NCBI
cM Map	8	47.18	NCBI

Cnot1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	15,938,791 - 16,027,545 (-)	Ensembl
ChiLan1.0	NW_004955433	15,938,791 - 16,027,547 (-)	NCBI	ChiLan1.0	ChiLan1.0

CNOT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	67,987,068 - 68,066,787 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	73,910,683 - 74,021,434 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	38,793,212 - 38,902,686 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	57,919,276 - 58,027,472 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	57,919,283 - 58,027,472 (-)	Ensembl			panPan2	panpan1.1

CNOT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	58,038,456 - 58,138,364 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	58,038,483 - 58,137,622 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	54,668,858 - 54,768,748 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	58,576,260 - 58,677,212 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	58,576,300 - 58,677,645 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	55,405,764 - 55,506,839 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	56,410,286 - 56,514,088 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	57,308,231 - 57,409,115 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cnot1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	49,204,138 - 49,286,987 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	10,302,087 - 10,384,957 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	10,302,091 - 10,384,945 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNOT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	20,271,596 - 20,372,245 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	20,271,593 - 20,372,300 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	18,405,850 - 18,474,575 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNOT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	44,460,025 - 44,567,843 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	44,455,311 - 44,567,815 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	31,603,098 - 31,711,911 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cnot1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	27,676,325 - 27,756,754 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	27,659,424 - 27,757,024 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cnot1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	2,539,392 - 2,624,541 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cnot1
395 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	54
Count of miRNA genes:	42
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000016563
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31969901	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	7997750	52997750	Rat
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24694445	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	7997750	52997750	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	7997750	52997750	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	7997750	52997750	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	5748064	50748064	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27361636	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Markers in Region

BF387398

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	9,337,425 - 9,337,576 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	9,752,463 - 9,752,613	NCBI	Rnor6.0
Rnor_5.0	19	9,737,541 - 9,737,691	UniSTS	Rnor5.0
RGSC_v3.4	19	9,794,040 - 9,794,190	UniSTS	RGSC3.4
Celera	19	9,232,690 - 9,232,840	UniSTS
RH 3.4 Map	19	76.92	UniSTS
Cytogenetic Map	19	p13	UniSTS

AU047625

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	9,292,337 - 9,292,532 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	9,705,315 - 9,705,509	NCBI	Rnor6.0
Rnor_5.0	19	9,690,498 - 9,690,692	UniSTS	Rnor5.0
RGSC_v3.4	19	9,749,153 - 9,749,347	UniSTS	RGSC3.4
Celera	19	9,188,982 - 9,189,176	UniSTS
Cytogenetic Map	19	p13	UniSTS

MARC_16903-16904:1022861972:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	9,295,865 - 9,296,372 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	9,708,842 - 9,709,348	NCBI	Rnor6.0
Rnor_5.0	19	9,694,025 - 9,694,531	UniSTS	Rnor5.0
RGSC_v3.4	19	9,752,680 - 9,753,186	UniSTS	RGSC3.4
Celera	19	9,192,509 - 9,193,015	UniSTS
Cytogenetic Map	19	p13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC086325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016563 ⟹ ENSRNOP00000016563

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	9,261,294 - 9,352,636 (+)	Ensembl
mRatBN7.2 Ensembl	19	9,255,194 - 9,346,574 (+)	Ensembl
Rnor_6.0 Ensembl	19	9,668,186 - 9,761,605 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105256 ⟹ ENSRNOP00000091388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	9,261,294 - 9,352,636 (+)	Ensembl
mRatBN7.2 Ensembl	19	9,255,194 - 9,346,574 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118032 ⟹ ENSRNOP00000090364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	9,261,299 - 9,352,359 (+)	Ensembl
mRatBN7.2 Ensembl	19	9,255,194 - 9,346,297 (+)	Ensembl

RefSeq Acc Id:

NM_001134840 ⟹ NP_001128312

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,261,294 - 9,352,636 (+)	NCBI
mRatBN7.2	19	9,255,194 - 9,346,574 (+)	NCBI
Rnor_6.0	19	9,668,186 - 9,761,605 (+)	NCBI
Rnor_5.0	19	9,652,472 - 9,746,683 (+)	NCBI
RGSC_v3.4	19	9,712,024 - 9,803,182 (+)	RGD
Celera	19	9,151,859 - 9,241,563 (+)	RGD

Sequence:

show sequence

GCGACGTGAGCGCGCGACCTCGGGCGCCATTTTGTCGAGAAACAAGCGGAGTTAACCGAAGAGG
GGGGTCGAGGAGAGCCGGAGTCGAGGACCCAGGAGTTTCCTGTGTCCAGCGCTGCCGGAGCCGC
CTGAGGTGCCATGTTTCAGAACAGAGTAAGACACTTGGTAAAGAAGAACTGAAGACATTTATAG
ATACCAGAGATAGCCTGATTACAAAGAAAGCATTAACCTGCCTCTGAGGTGACTAAAGGGGAAT
AATGGTGATTTTGCGCCGGGCTCGGCCGCCTGCTTCCGCCCCAACCAGCAATGAATCTTGACTC
GCTCTCGCTGGCCTTGTCTCAAATCAGCTACCTGGTGGACAATTTAACCAAGAAAAACTACCGA
GCCAGCCAGCAGGAAATACAGCATATTGTAAATCGGCACGGTCCTGAGGCAGACAGGCATTTAT
TACGCTGCCTATTTTCACATGTGGATTTCAGTGGCGATGGTAAAAGCAGTGGCAAAGATTTCCA
TCAGACACAGTTTCTGATTCAGGAGTGTGCCTCGCTGATTACAAAGCCAAATTTTATCTCGACA
TTGTCATATGCCATTGATAATCCTTTGCACTACCAGAAGAGTTTAAAACCTGCACCCCACTTAT
TTGCCCAGCTGAGTAAAGTTCTCAAGTTAAGTAAAGTACAAGAGGTAATTTTTGGTCTTGCCCT
TTTGAATTCTTCTAGCCCAGATCTCAGGGGATTTGCTGCCCAGTTTATTAAGCAGAAGCTTCCA
GATCTTCTGCGTTCTTACATTGACGCAGACGTCAGTGGAAATCAAGAAGGTGGCTTCCAAGATA
TAGCAATAGAGGTCCTGCACCTCCTGCTCTCCCACCTCCTCTTTGGGCAGAAGGGGGCCTTTGG
AGTCGGGCAGGAGCAGATAGACGCCTTTCTCAAGACGCTGCGCAGAGATTTTCCCCAAGAGCGT
TGTCCTGTGGTGCTTGCACCACTCCTATACCCTGAAAAACGGGACATTCTAATGGACAGGATTC
TGCCTGACTCTGGAGGGGTAGCTAAGACCATGATGGAGAGCTCTCTGGCTGATTTCATGCAAGA
AGTGGGCTATGGCTTTTGTGCAAGTATTGAAGAATGTCGCAATATAATCATGCAGTTTGGTGTT
CGGGAGGTGACAGCTGCCCAGGTTGCCAGGGTCTTGGGAATGATGGCTCGGACTCACTCAGGAT
TAACAGATGGTATTCCATTACAGAGCATCTCTGCTCCCGGCAGTGGGATCTGGAGTGATGGGAA
AGATAAAAGCGAGGGGGCACAGGCACACACGTGGAATGTAGAGGTTTTGATCGATGTTCTTAAA
GAACTGAACCCGAGTTTGAATTTCAAGGAAGTAACTTATGAACTGGACCATCCTGGATTTCAAA
TTCGTGATAGCAAAGGGCTTCACAATGTGGTGTATGGCATTCAGAGGGGTCTGGGCATGGAAGT
GTTCCCAGTGGACTTTATATATAGGCCCTGGAAACATGCGGAAGGCCAGCTCTCCTTCATCCAG
CATTCCCTGATAAACCCAGAAGTCTTCTGCTTTGCCGACTACCCCTGTCACACTGTTGCCACTG
ATATTTTGAAAGCACCACCAGAGGATGACAATCGAGAAATTGCCACATGGAAAAGCTTGGATTT
GATTGAATCTCTGCTGAGGCTTGCAGAGGTTGGGCAGTATGAGCAAGTGAAACAACTCTTCAGC
TTCCCTATCAAACACTGTCCAGACATGTTGGTATTGGCCTTACTTCAAATCAACACCTCCTGGC
ACACCCTACGCCATGAACTCATTTCTACTTTGATGCCAATTTTCCTTGGAAACCATCCTAACTC
TGCCATTATTTTGCACTATGCATGGCATGGGCAGGGACAGTCTCCATCAATTCGCCAACTTATA
ATGCATGCAATGGCAGAATGGTACATGAGAGGGGAGCAGTATGACCAGGCCAAATTGTCTCGAA
TACTTGATGTGGCCCAGGACTTGAAGGCCCTGTCGATGCTGCTGAACGGCACTCCATTTGCCTT
TGTTATTGACCTTGCTGCACTCGCTTCTCGGCGTGAATACCTCAAACTTGACAAGTGGCTAACA
GATAAGATAAGAGAGCATGGGGAGCCTTTTATACAAGCATGTATGACTTTTTTAAAAAGAAGGT
GCCCTTCTATTTTGGGTGGACTTGCCCCAGAGAAAGATCAGCCCAAAAGTGCTCAACTTCCTGC
TGAAACACTAGCGACAATGTTGGCCTGTCTACAGGCTTGTGCAGGGAGTGTTTCTCAGGAGTTA
TCCGAGACTATCCTCACCATGGTAGCCAATTGCAGTAATGTAATGAATAAGGCCAGACAGCCAC
CACCTGGAGTTATGCCCAAAGGCCGCCCTCCTAGTGCTAGCAGCTTAGATGCCATTTCTCCTGT
TCAGATTGACCCTCTTGCTGGAATGGCATCTCTTAGTATAGGTGGTTCAGCTGCCCCTCACACC
CAGAGCATGCAGGGTTTTCCTCCAAATTTGGGTTCTGCGTTCAGTACACCTCAGTCACCAGCAA
AAGCATTTCCACCACTTTCAACCCCAAATCAAACAACGGCATTCAGTGGTATTGGGGGACTTTC
ATCACAGCTTCCAGTAGGTGGTCTTGGCACAGGAAGCCTGACTGGCATAGGAACTGGGGCCCTT
GGACTTCCTGCAGTGAACAGTGATCCTTTTGTACAGAGGAAACTGGGCACCTCTGGACTCAACC
AGCCTACATTCCAGCAGAGTAAGATGAAACCTTCCGACTTGTCTCAGGTGTGGCCAGAGGCAAA
TCAGCACTTTAGTAAAGAAATAGATGACGAAGCAAACAGCTATTTCCAGCGAATATATAATCAC
CCCCCACATCCAACCATGTCTGTTGATGAGGTACTAGAAATGCTACAGAGATTTAAAGACTCTA
CAATAAAAAGGGAGCGAGAAGTATTTAACTGTATGCTAAGGAACTTATTTGAAGAATACCGGTT
TTTTCCCCAGTACCCTGATAAAGAATTACATATAACAGCCTGCTTGTTTGGTGGCATAATTGAA
AAAGGACTGGTCACTTACATGGCATTGGGTCTGGCCCTGCGATATGTTCTTGAAGCCTTACGGA
AGCCTTTTGGGTCCAAAATGTATTATTTTGGTATTGCTGCACTAGATAGATTTAAAAATAGATT
GAAGGACTATCCTCAGTATTGTCAACACCTGGCTTCTATCAGTCACTTTATGCAGTTCCCACAC
CATTTGCAGGAGTACATCGAATATGGACAACAGTCTCGAGATCCTCCTGTGAAAATGCAGGGCT
CTATCACTACCCCTGGAAGTATTGCACTGGCTCAGGCCCAGGCCCAGGCCCAGGTTCCAGCAAA
AGCCCCTCTTGCGGGTCAGGTTAACACAATGGTGACCACCTCAACAACCACCACTGTTGCTAAA
ACGGTTACAGTCACCAAGCCAACAGGAGTCAGCTTTAAGAAAGATGTGCCACCTTCCATAAACA
CAACGAATATCGATACACTGCTTGTGGCCACAGATCAAACTGAGAGGATTGTGGAGCCCCCAGA
GAATATTCAAGAGAAAATTGCTTTTATTTTCAACAATCTCTCACAGTCAAATATGACACAAAAG
GTTGAAGAGCTTAAAGAAACTGTGAAGGAAGAATTTATGCCTTGGGTTTCCCAGTATCTAGTTA
TGAAAAGAGTCAGTATTGAGCCAAACTTTCATAGCTTGTATTCAAACTTTCTTGATACATTGAA
GAATCCTGAATTTAACAAGATGGTTCTGAATGAAACCTACAGAAACATTAAAGTGCTGCTGACT
TCTGATAAAGCTGCGGCCAATTTCTCAGATCGTTCTTTGCTGAAGAACTTGGGACATTGGTTAG
GAATGATCACATTAGCTAAAAATAAACCCATCTTACACACGGACTTGGATGTGAAATCCCTTCT
GTTAGAGGCTTACGTTAAAGGACAACAGGAGCTGCTTTATGTAGTGCCCTTTGTTGCCAAAGTT
CTAGAGTCCAGCATTCGTAGTCTGGTTTTTAGACCACCCAATCCCTGGACGATGGCCATTATGA
ATGTCTTGGCAGAGCTGCACCAGGAGCATGACCTGAAGTTAAACTTGAAGTTTGAGATTGAGGT
GCTCTGTAAGAACCTCGCATTAGACATCAACGAGCTCAAACCTGGAAACCTGCTGAAAGACAAA
GATCGCCTGAAGAATTTAGATGAACAGCTCTCTGCTCCAAAGAAAGATGTCAAACAGCCAGAAG
AGCTTCCTGCCATCACAACAACAACGACTTCTACAACACCAGCTACCAGCACTACGTGCACAGC
CACCGTTCCGCCACAGCCGCAGTACAGCTACCATGACATTAATGTCTATTCTCTAGCAGGCCTG
GCACCTCACATTACTCTAAACCCTACAATCCCTTTATTTCAGGCTCATCCACAGTTGAAGCAGT
GTGTGCGACAAGCAATTGAACGAGCTGTCCAGGAGCTAGTCCACCCCGTGGTGGATCGGTCCAT
TAAGATTGCTATGACTACATGTGAACAGATAGTTAGAAAGGACTTTGCTCTGGATTCTGAAGAA
TCTAGAATGAGAATAGCAGCTCATCACATGATGCGGAACTTGACAGCTGGAATGGCTATGATTA
CTTGCAGGGAACCTTTACTGATGAGCATATCTACCAACCTCAAAAACAGCTTCGCTTCAGCTCT
CCGTACTGCGTCCCCACAACAAAGGGAGATGATGGACCAGGCCGCCGCTCAGTTAGCTCAGGAC
AATTGTGAATTAGCTTGCTGCTTTATTCAGAAAACTGCAGTGGAGAAAGCAGGCCCTGAGATGG
ACAAGAGATTGGCAACTGAATTTGAGCTGAGGAAACACGCTCGGCAAGAAGGCCGTCGGTACTG
TGATCCTGTTGTGCTTACATACCAAGCCGAACGGATGCCCGAGCAGATCAGGCTGAAAGTTGGT
GGTGTGGACCCAAAGCAGCTAGCCGTCTATGAAGAGTTTGCGCGAAATGTGCCTGGCTTCTTAC
CTACAAATGACTTAAGTCAGCCTACAGGGTTTTTAGCACAGCCCATGAAGCAAGCTTGGGCAAC
AGATGACGTCGCTCAGATTTATGATAAGTGTATTACAGAACTGGAGCAGCACCTGCATGCCATC
CCACCAACTTTGGCCATGAATCCCCAAGCCCAGGCTCTACGAAGTCTCTTAGAGGTTGTAGTAT
TGTCTCGGAATTCTCGGGATGCTATAGCTGCTCTTGGATTACTACAGAAGGCTGTGGAGGGCCT
ATTGGATGCCACAAGTGGTGCTGACGCTGACCTGCTGCTGCGCTACAGGGAGTGCCACCTGCTG
GTGCTGAAAGGGCTGCAGGACGGCAGGGCGTACGGGTCTCCATGGTGCAACAAGCAGATCACAA
GGTGCCTAATCGAATGCCGAGATGAATACAAGTATAATGTGGAGGCCGTGGAGTTGTTAATCCG
AAACCATCTGGTCAACATGCAGCAGTATGACCTTCATCTTGCTCAGTCGATGGAGAATGGCTTA
AACTACATGGCCGTGGCATTTGCTATGCAACTGGTAAAAATTCTGCTGGTGGACGAAAGGAGTG
TTGCCCATATTACTGAGGCAGATCTGTTCCACACCATTGAAACCCTCATGAGAATTAATGCTCA
TTCCAGAGGCAATGCTCCAGAAGGATTGCCCCAGCTGATGGAAGTGGTGAGATCTAACTATGAA
GCAATGATTGATCGTGCTCATGGAGGCCCTAACTTTATGATGCATTCTGGGATCTCTCAAGCCT
CAGAATATGATGACCCTCCAGGCCTGAGGGAGAAGGCAGAGTATCTTCTGAGGGAATGGGTGAA
TCTGTACCATTCAGCAGCAGCTGGCCGTGACAGTACCAAAGCATTCTCTGCGTTTGTTGGACAG
ATGCACCAACAAGGAATACTTAAAACTGATGACCTCATAACAAGGTTTTTTCGACTTTGCACTG
AAATGTGTGTTGAAATCAGTTACCGTGCTCAGGCAGAGCAGCAGCACAATCCTGCTGCCAACCC
CACCATGATCCGGGCCAAGTGTTACCACAACCTGGATGCCTTTGTCCGCCTCATTGCACTGTTA
GTGAAGCACTCTGGGGAGGCCACCAACACTGTCACAAAGATCAACCTGCTTAATAAGGTTCTCG
GTATAGTAGTGGGAGTTCTCCTGCAGGACCACGATGTCCGGCAGAGCGAGTTTCAGCAGCTTCC
CTACCATAGGATTTTCATCATGCTGCTGCTGGAGCTCAATGCACCTGAGCACGTGTTGGAGACC
ATCAATTTCCAGACCCTTACAGCTTTCTGCAATACATTCCACATCTTGAGGCCTACCAAAGCTC
CTGGCTTTGTATATGCTTGGCTTGAATTGATCTCGCATCGGATCTTTATTGCAAGAATGCTGGC
ACACACGCCACAGCAGAAGGGGTGGCCTATGTATGCACAGCTGTTGATTGATTTATTCAAATAT
TTAGCACCTTTCCTTAGAAATGTGGAACTCACTAAACCTATGCAAATCCTCTACAAGGGTACTC
TGAGAGTGCTGCTAGTTCTTTTGCATGATTTCCCAGAGTTCCTTTGTGATTACCATTATGGGTT
CTGTGATGTGATCCCTCCTAATTGTATCCAGTTAAGAAATTTGATCCTGAGTGCCTTCCCAAGA
AATATGAGGCTCCCAGACCCATTCACGCCTAATCTGAAGGTGGACATGCTGAGCGAAATTAACA
TTGCACCTCGGATCCTCACCAACTTCACTGGAGTGATGCCACCTCAGTTCAAAAAAGATTTGGA
TTCTTATCTTAAAACTCGATCACCGGTCACTTTTCTGTCTGATCTGCGTAGTAACCTACAGGTA
TCTAATGAACCTGGGAATCGCTACAACCTCCAGCTTATCAATGCATTGGTGCTCTATGTAGGGA
CTCAGGCCATCGCGCACATCCACAACAAGGGCAGCACGCCTTCAATGAGCACCATCACCCACTC
AGCACACATGGACATCTTCCAGAATCTGGCTGTGGACCTAGATACCGAGGGCCGGTATCTCTTT
TTAAACGCAATTGCAAACCAGCTGCGGTACCCAAACAGCCACACGCACTACTTCAGCTGCACCA
TGCTGTACCTTTTTGCCGAGGCGAACACTGAGGCAATCCAGGAACAGATCACAAGGGTTCTCTT
GGAACGGTTGATTGTAAATAGGCCGCATCCTTGGGGTCTTCTCATCACCTTCATTGAGCTGATT
AAAAACCCAGCATTTAAGTTCTGGAACCATGAATTTGTACACTGTGCCCCAGAGATCGAAAAGC
TGTTCCAGTCTGTTGCGCAGTGCTGCATGGGACAGAAGCAGGCTCAGCAAGTGATGGAGGGGAC
CGGTGCCAGTTAGATGAACTGTGTATATCCCTTGCAGAGGCATCAACCTTGGTCCCACTGAACC
AAGTTCATAAACTGAAGAATCCTTTCAGCTCCTCCTGACTTTCCTAGCCCTTTGGTTCTCAGGC
GTCTGCCCCAACAACTGCTGGGGTTGGTTCTCCTGTCTATGTGGGCAAGTTCCAAAGTTTAAAT
GCATTTTTTTTTTTGACTCTTGGCCAAAATTTAGAAGATGCTGTGAATATCATTTTGAACTTGT
GTAAATATATGAAAGAGAAAACTTTTGTCTGGAA

hide sequence

RefSeq Acc Id:

XM_039097544 ⟹ XP_038953472

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,261,290 - 9,352,623 (+)	NCBI
mRatBN7.2	19	9,255,190 - 9,346,574 (+)	NCBI

RefSeq Acc Id:

XM_039097547 ⟹ XP_038953475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,261,290 - 9,352,623 (+)	NCBI
mRatBN7.2	19	9,255,190 - 9,346,574 (+)	NCBI

RefSeq Acc Id:

XM_039097548 ⟹ XP_038953476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,261,290 - 9,352,623 (+)	NCBI
mRatBN7.2	19	9,255,190 - 9,346,574 (+)	NCBI

RefSeq Acc Id:

XM_039097549 ⟹ XP_038953477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,261,290 - 9,352,623 (+)	NCBI
mRatBN7.2	19	9,255,190 - 9,346,574 (+)	NCBI

RefSeq Acc Id:

XM_063277843 ⟹ XP_063133913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,261,869 - 9,352,623 (+)	NCBI

RefSeq Acc Id:

XM_063277844 ⟹ XP_063133914

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,261,869 - 9,352,623 (+)	NCBI

RefSeq Acc Id:

XM_063277845 ⟹ XP_063133915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,264,889 - 9,352,623 (+)	NCBI

RefSeq Acc Id:

XM_063277846 ⟹ XP_063133916

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,261,290 - 9,352,623 (+)	NCBI

RefSeq Acc Id:

XM_063277847 ⟹ XP_063133917

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,261,290 - 9,352,623 (+)	NCBI

RefSeq Acc Id:

XM_063277848 ⟹ XP_063133918

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	9,261,290 - 9,352,623 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128312	(Get FASTA)	NCBI Sequence Viewer
	XP_038953472	(Get FASTA)	NCBI Sequence Viewer
	XP_038953475	(Get FASTA)	NCBI Sequence Viewer
	XP_038953476	(Get FASTA)	NCBI Sequence Viewer
	XP_038953477	(Get FASTA)	NCBI Sequence Viewer
	XP_063133913	(Get FASTA)	NCBI Sequence Viewer
	XP_063133914	(Get FASTA)	NCBI Sequence Viewer
	XP_063133915	(Get FASTA)	NCBI Sequence Viewer
	XP_063133916	(Get FASTA)	NCBI Sequence Viewer
	XP_063133917	(Get FASTA)	NCBI Sequence Viewer
	XP_063133918	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86325	(Get FASTA)	NCBI Sequence Viewer
	AAH99150	(Get FASTA)	NCBI Sequence Viewer
	AAI68171	(Get FASTA)	NCBI Sequence Viewer
	EDL87270	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016563
	ENSRNOP00000016563.7
	ENSRNOP00000090364
	ENSRNOP00000090364.1
	ENSRNOP00000091388.1

RefSeq Acc Id:

NP_001128312 ⟸ NM_001134840

- UniProtKB:

A6JXZ2 (UniProtKB/TrEMBL), A0A8I6AG10 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGDGKSS
GKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLSKVQEVI
FGLALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQ
KGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRILPDSGGVAKTMMESSLA
DFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQSISAPGSGI
WSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHNVVYGIQRG
LGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFCFADYPCHTVATDILKAPPEDDNREIATW
KSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLG
NHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNG
TPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKS
AQLPAETLATMLACLQACAGSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLD
AISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSG
IGGLSSQLPVGGLGTGSLTGIGTGALGLPAVNSDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQV
WPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF
EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQA
QVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLVATDQTERI
VEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNF
LDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLD
VKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTMAIMNVLAELHQEHDLKLNLK
FEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKDVKQPEELPAITTTTTSTTPATS
TTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPV
VDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNS
FASALRTASPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQE
GRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMK
QAWATDDVAQIYDKCITELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQK
AVEGLLDATSGADADLLLRYRECHLLVLKGLQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAV
ELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLM
RINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLL
REWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQSE
FQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFI
ARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCD
YHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQF
KKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMS
TITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQI
TRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQ
VMEGTGAS

hide sequence

Ensembl Acc Id:

ENSRNOP00000016563 ⟸ ENSRNOT00000016563

RefSeq Acc Id:	XP_038953472 ⟸ XM_039097544
- Peptide Label:	isoform X1
- UniProtKB:	G3V7M0 (UniProtKB/TrEMBL), A0A8I6AG10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953477 ⟸ XM_039097549
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AG10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953476 ⟸ XM_039097548
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AG10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953475 ⟸ XM_039097547
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AG10 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000090364 ⟸ ENSRNOT00000118032

Ensembl Acc Id:

ENSRNOP00000091388 ⟸ ENSRNOT00000105256

RefSeq Acc Id:	XP_063133917 ⟸ XM_063277847
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AG10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133916 ⟸ XM_063277846
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AG10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133918 ⟸ XM_063277848
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AG10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133913 ⟸ XM_063277843
- Peptide Label:	isoform X1
- UniProtKB:	G3V7M0 (UniProtKB/TrEMBL), A0A8I6AG10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133914 ⟸ XM_063277844
- Peptide Label:	isoform X1
- UniProtKB:	G3V7M0 (UniProtKB/TrEMBL), A0A8I6AG10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063133915 ⟸ XM_063277845
- Peptide Label:	isoform X1
- UniProtKB:	G3V7M0 (UniProtKB/TrEMBL), A0A8I6AG10 (UniProtKB/TrEMBL)

Protein Domains

CCR4-Not complex component Not1 C-terminal CCR4-NOT transcription complex subunit CCR4-NOT transcription complex subunit 1 CAF1- CCR4-NOT transcription complex subunit 1 HEAT CCR4-NOT transcription complex subunit 1 N-terminal CCR4-NOT transcription complex subunit 1 TTP CCR4-NOT transcription complex subunit 1-like NOT1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V7M0-F1-model_v2	AlphaFold	G3V7M0	1-2376	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700922

Promoter ID:

EPDNEW_R11446

Type:

multiple initiation site

Name:

Cnot1_1

Description:

CCR4-NOT transcription complex, subunit 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	9,668,219 - 9,668,279	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308009	AgrOrtholog
BioCyc Gene	G2FUF-6550	BioCyc
Ensembl Genes	ENSRNOG00000012271	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016563	ENTREZGENE
	ENSRNOT00000016563.7	UniProtKB/TrEMBL
	ENSRNOT00000105256.2	UniProtKB/TrEMBL
	ENSRNOT00000118032	ENTREZGENE
	ENSRNOT00000118032.2	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.180	UniProtKB/TrEMBL
	1.25.40.790	UniProtKB/TrEMBL
	1.25.40.800	UniProtKB/TrEMBL
	1.25.40.840	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7107420	IMAGE-MGC_LOAD
InterPro	CCR4-Not_Not1_C	UniProtKB/TrEMBL
	CCR4-Not_Not1su_DUF3819	UniProtKB/TrEMBL
	CNOT1	UniProtKB/TrEMBL
	CNOT1-like_NOT1_connector	UniProtKB/TrEMBL
	CNOT1_1st	UniProtKB/TrEMBL
	CNOT1_CAF1_bind	UniProtKB/TrEMBL
	CNOT1_HEAT	UniProtKB/TrEMBL
	CNOT1_TTP_bind	UniProtKB/TrEMBL
	CNOT1_TTP_bind_sf	UniProtKB/TrEMBL
KEGG Report	rno:291841	UniProtKB/TrEMBL
MGC_CLONE	MGC:105825	IMAGE-MGC_LOAD
NCBI Gene	291841	ENTREZGENE
PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1	UniProtKB/TrEMBL
	PTHR13162	UniProtKB/TrEMBL
Pfam	CNOT1_1st	UniProtKB/TrEMBL
	CNOT1_CAF1_bind	UniProtKB/TrEMBL
	CNOT1_HEAT	UniProtKB/TrEMBL
	CNOT1_TTP_bind	UniProtKB/TrEMBL
	DUF3819	UniProtKB/TrEMBL
	Not1	UniProtKB/TrEMBL
	NOT1_connector	UniProtKB/TrEMBL
PhenoGen	Cnot1	PhenoGen
RatGTEx	ENSRNOG00000012271	RatGTEx
UniProt	A0A8I6ABN6_RAT	UniProtKB/TrEMBL
	A0A8I6AG10	ENTREZGENE, UniProtKB/TrEMBL
	A6JXZ2	ENTREZGENE, UniProtKB/TrEMBL
	G3V7M0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-23	Cnot1	CCR4-NOT transcription complex, subunit 1	RGD1308009	similar to KIAA1007 protein; adrenal gland protein AD-005	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1308009	similar to KIAA1007 protein; adrenal gland protein AD-005	RGD1308009_predicted	similar to KIAA1007 protein; adrenal gland protein AD-005 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1308009_predicted	similar to KIAA1007 protein; adrenal gland protein AD-005 (predicted)	LOC291841_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC291841_predicted	similar to KIAA1007 protein; adrenal gland protein AD-005 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

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RGD Manual Annotations

Imported Annotations - KEGG (archival)