Mrpl50 (mitochondrial ribosomal protein L50) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Mrpl50 (mitochondrial ribosomal protein L50) Rattus norvegicus
Analyze
Symbol: Mrpl50
Name: mitochondrial ribosomal protein L50
RGD ID: 1308008
Description: Predicted to be located in cytosol; mitochondrion; and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL50 (mitochondrial ribosomal protein L50); INTERACTS WITH alpha-Zearalanol; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 39S ribosomal protein L50, mitochondrial; large ribosomal subunit protein mL50; LOC362517
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8568,662,933 - 68,668,087 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl568,662,939 - 68,669,748 (-)EnsemblGRCr8
mRatBN7.2563,867,437 - 63,872,591 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx565,798,163 - 65,803,310 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0567,617,495 - 67,622,642 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0567,586,875 - 67,592,022 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0564,784,164 - 64,789,318 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl564,784,170 - 64,789,318 (-)Ensemblrn6Rnor6.0
Rnor_5.0569,275,573 - 69,280,730 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4566,261,553 - 66,266,710 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera563,735,392 - 63,740,545 (+)NCBICelera
RGSC_v3.1566,267,116 - 66,271,803 (-)NCBI
Cytogenetic Map5q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dimethyl sulfoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
leflunomide  (EXP)
lipopolysaccharide  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
resorcinol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
thimerosal  (ISO)
thiram  (ISO)
topotecan  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14651853   PMID:18614015   PMID:25278503   PMID:28892042  


Genomics

Comparative Map Data
Mrpl50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8568,662,933 - 68,668,087 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl568,662,939 - 68,669,748 (-)EnsemblGRCr8
mRatBN7.2563,867,437 - 63,872,591 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx565,798,163 - 65,803,310 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0567,617,495 - 67,622,642 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0567,586,875 - 67,592,022 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0564,784,164 - 64,789,318 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl564,784,170 - 64,789,318 (-)Ensemblrn6Rnor6.0
Rnor_5.0569,275,573 - 69,280,730 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4566,261,553 - 66,266,710 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera563,735,392 - 63,740,545 (+)NCBICelera
RGSC_v3.1566,267,116 - 66,271,803 (-)NCBI
Cytogenetic Map5q22NCBI
MRPL50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389101,387,633 - 101,398,618 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9101,387,633 - 101,398,618 (-)Ensemblhg38GRCh38
GRCh379104,149,915 - 104,160,900 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369103,192,070 - 103,200,717 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349101,231,803 - 101,240,451NCBI
Celera974,665,854 - 74,674,524 (-)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef973,751,699 - 73,760,369 (-)NCBIHuRef
CHM1_19104,298,663 - 104,307,332 (-)NCBICHM1_1
T2T-CHM13v2.09113,559,613 - 113,570,593 (-)NCBIT2T-CHM13v2.0
Mrpl50
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39449,512,597 - 49,521,083 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl449,512,596 - 49,521,093 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38449,512,597 - 49,521,083 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl449,512,596 - 49,521,093 (-)Ensemblmm10GRCm38
MGSCv37449,525,469 - 49,533,955 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36449,533,697 - 49,542,183 (-)NCBIMGSCv36mm8
Celera449,540,851 - 49,549,337 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.54NCBI
Mrpl50
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541924,416,556 - 24,425,288 (+)Ensembl
ChiLan1.0NW_00495541924,416,556 - 24,425,288 (+)NCBIChiLan1.0ChiLan1.0
MRPL50
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21137,963,998 - 37,974,042 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1937,966,381 - 37,976,417 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0972,598,030 - 72,607,297 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19100,592,607 - 100,601,435 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9100,592,607 - 100,601,435 (-)EnsemblpanPan2panpan1.1
MRPL50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11158,126,242 - 58,129,171 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1158,126,547 - 58,129,123 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1156,571,953 - 56,574,915 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01159,263,004 - 59,265,966 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1159,263,072 - 59,265,911 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11157,772,750 - 57,775,710 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01157,785,796 - 57,788,783 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01158,483,375 - 58,486,338 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mrpl50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947173,010,718 - 173,016,859 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365249,558,835 - 9,564,452 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365249,558,298 - 9,564,414 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1243,100,372 - 243,107,084 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11243,100,365 - 243,106,831 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21271,655,691 - 271,660,590 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11238,042,285 - 38,050,896 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1238,042,317 - 38,050,527 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660354,503,857 - 4,511,616 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247589,901,143 - 9,916,504 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247589,901,076 - 9,915,639 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mrpl50
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1757,369,291 - 57,373,983 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mrpl50
47 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:313
Count of miRNA genes:188
Interacting mature miRNAs:211
Transcripts:ENSRNOT00000009678
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat

Markers in Region
RH127654  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2751,209,874 - 51,210,093 (+)MAPPERmRatBN7.2
mRatBN7.2563,867,959 - 63,868,161 (+)MAPPERmRatBN7.2
Rnor_6.0564,784,687 - 64,784,888NCBIRnor6.0
Rnor_6.0758,576,579 - 58,576,797NCBIRnor6.0
Rnor_5.0758,585,045 - 58,585,263UniSTSRnor5.0
Rnor_5.0569,276,096 - 69,276,300UniSTSRnor5.0
RGSC_v3.4566,262,076 - 66,262,280UniSTSRGSC3.4
RGSC_v3.4754,862,074 - 54,862,292UniSTSRGSC3.4
Celera747,998,278 - 47,998,496UniSTS
Celera563,739,822 - 63,740,023UniSTS
RH 3.4 Map5563.39UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map5q22UniSTS
RH137145  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2751,210,570 - 51,210,778 (+)MAPPERmRatBN7.2
mRatBN7.2563,868,653 - 63,868,861 (+)MAPPERmRatBN7.2
Rnor_6.0564,785,381 - 64,785,588NCBIRnor6.0
Rnor_6.0758,577,275 - 58,577,482NCBIRnor6.0
Rnor_5.0758,585,741 - 58,585,948UniSTSRnor5.0
Rnor_5.0569,276,793 - 69,277,000UniSTSRnor5.0
RGSC_v3.4566,262,773 - 66,262,980UniSTSRGSC3.4
RGSC_v3.4754,862,770 - 54,862,977UniSTSRGSC3.4
Celera747,998,974 - 47,999,181UniSTS
Celera563,739,122 - 63,739,329UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000078957   ⟹   ENSRNOP00000071446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl564,784,170 - 64,789,318 (-)Ensembl
RefSeq Acc Id: NM_001108665   ⟹   NP_001102135
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8568,662,933 - 68,668,087 (-)NCBI
mRatBN7.2563,867,437 - 63,872,591 (-)NCBI
Rnor_6.0564,784,164 - 64,789,318 (-)NCBI
Rnor_5.0569,275,573 - 69,280,730 (-)NCBI
RGSC_v3.4566,261,553 - 66,266,710 (-)RGD
Celera563,735,392 - 63,740,545 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102135 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL78182 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000091379.1
  ENSRNOP00000109930.1
  ENSRNOP00000112685
  ENSRNOP00000112685.1
RefSeq Acc Id: NP_001102135   ⟸   NM_001108665
- UniProtKB: A6KJE4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071446   ⟸   ENSRNOT00000078957

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZYL4-F1-model_v2 AlphaFold D3ZYL4 1-159 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693729
Promoter ID:EPDNEW_R4254
Type:multiple initiation site
Name:Mrpl50_1
Description:mitochondrial ribosomal protein L50
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0564,789,296 - 64,789,356EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308008 AgrOrtholog
BioCyc Gene G2FUF-41328 BioCyc
Ensembl Genes ENSRNOG00000053615 Ensembl
  ENSRNOG00000068816 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000097036.2 UniProtKB/TrEMBL
  ENSRNOT00000133940.1 UniProtKB/TrEMBL
  ENSRNOT00000134806 ENTREZGENE
  ENSRNOT00000134806.1 UniProtKB/TrEMBL
InterPro Ribosomal_L50_mt UniProtKB/TrEMBL
KEGG Report rno:362517 UniProtKB/TrEMBL
NCBI Gene 362517 ENTREZGENE
PANTHER 39A RIBOSOMAL PROTEIN L50, MITOCHONDRIAL UniProtKB/TrEMBL
  39S RIBOSOMAL PROTEIN L50, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Ribosomal_L50 UniProtKB/TrEMBL
PhenoGen Mrpl50 PhenoGen
RatGTEx ENSRNOG00000053615 RatGTEx
  ENSRNOG00000068816 RatGTEx
UniProt A0A8I6AF38_RAT UniProtKB/TrEMBL
  A0ABK0LNU0_RAT UniProtKB/TrEMBL
  A0ABK0LUL5_RAT UniProtKB/TrEMBL
  A6KJE4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mrpl50  mitochondrial ribosomal protein L50   Mrpl50_predicted  mitochondrial ribosomal protein L50 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mrpl50_predicted  mitochondrial ribosomal protein L50 (predicted)      Symbol and Name status set to approved 70820 APPROVED