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Gene: Cnnm3 (cyclin and CBS domain divalent metal cation transport mediator 3) Rattus norvegicus

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Symbol:

Cnnm3

Name:

cyclin and CBS domain divalent metal cation transport mediator 3

RGD ID:

1307926

Description:

Predicted to enable transmembrane transporter activity. Predicted to be involved in magnesium ion homeostasis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human CNNM3 (cyclin and CBS domain divalent metal cation transport mediator 3); INTERACTS WITH atrazine; bisphenol A; Cuprizon.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cyclin M3; LOC301345; metal transporter CNNM3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	46,251,252 - 46,266,613 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	46,251,265 - 46,266,613 (+)	Ensembl				GRCr8
mRatBN7.2	9	38,755,374 - 38,770,740 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	38,755,390 - 38,770,740 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	47,258,950 - 47,274,330 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	52,374,192 - 52,389,539 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	50,656,092 - 50,671,440 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	43,093,120 - 43,108,486 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	43,093,138 - 43,108,486 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	42,747,044 - 42,762,392 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	35,454,856 - 35,470,211 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	36,521,842 - 36,537,115 (+)	NCBI		Celera
RGSC_v3.1	9	35,463,650 - 35,468,785 (+)	NCBI
Cytogenetic Map	9	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

choline (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

GW 4064 (ISO)

hydralazine (ISO)

isoflurane (ISO)

L-methionine (ISO)

lead diacetate (ISO)

methapyrilene (ISO)

monosodium L-glutamate (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctanoic acid (ISO)

selenomethionine (ISO)

sevoflurane (ISO)

silicon dioxide (ISO)

sodium fluoride (ISO)

succimer (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

magnesium ion homeostasis (IBA,IEA)

monoatomic ion transport (IEA)

transmembrane transport (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IBA,IEA)

Molecular Function

protein binding (ISO)

transmembrane transporter activity (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19946888

Genomics

Comparative Map Data

Cnnm3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	46,251,252 - 46,266,613 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	46,251,265 - 46,266,613 (+)	Ensembl				GRCr8
mRatBN7.2	9	38,755,374 - 38,770,740 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	38,755,390 - 38,770,740 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	47,258,950 - 47,274,330 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	52,374,192 - 52,389,539 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	50,656,092 - 50,671,440 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	43,093,120 - 43,108,486 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	43,093,138 - 43,108,486 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	42,747,044 - 42,762,392 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	35,454,856 - 35,470,211 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	36,521,842 - 36,537,115 (+)	NCBI		Celera
RGSC_v3.1	9	35,463,650 - 35,468,785 (+)	NCBI
Cytogenetic Map	9	q21	NCBI

CNNM3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	96,816,268 - 96,837,466 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	96,816,245 - 96,835,382 (+)	Ensembl			hg38	GRCh38
GRCh37	2	97,482,005 - 97,501,119 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	96,845,718 - 96,864,848 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	91,921,772 - 91,941,256 (+)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	91,442,362 - 91,461,491 (+)	NCBI		HuRef
CHM1_1	2	97,486,917 - 97,506,047 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	97,322,898 - 97,344,098 (+)	NCBI		T2T-CHM13v2.0

Cnnm3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	36,550,948 - 36,567,318 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	36,550,948 - 36,567,318 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	36,511,867 - 36,528,237 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	36,511,867 - 36,528,237 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	36,568,721 - 36,585,082 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	36,456,422 - 36,472,783 (+)	NCBI		MGSCv36	mm8
Celera	1	36,298,687 - 36,315,048 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	15.3	NCBI

Cnnm3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	4,180,831 - 4,194,069 (+)	Ensembl
ChiLan1.0	NW_004955470	4,179,932 - 4,193,609 (+)	NCBI	ChiLan1.0	ChiLan1.0

CNNM3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	31,473,258 - 31,494,678 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	31,476,019 - 31,495,312 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	102,481,027 - 102,498,801 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	97,736,428 - 97,753,254 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

CNNM3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	45,136,239 - 45,154,769 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	45,147,339 - 45,154,744 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	45,062,850 - 45,080,935 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	46,012,176 - 46,030,322 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	46,016,731 - 46,030,322 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	45,723,705 - 45,741,772 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	46,010,130 - 46,028,293 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	46,193,751 - 46,211,854 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cnnm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	83,505,707 - 83,518,051 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936744	758,650 - 771,829 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CNNM3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	56,792,391 - 56,811,789 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	56,792,389 - 56,812,116 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	59,447,568 - 59,468,481 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CNNM3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	1,141,972 - 1,160,386 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	1,142,057 - 1,159,085 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	168,577,368 - 168,596,964 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cnnm3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	2,704,307 - 2,717,964 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	2,704,273 - 2,717,968 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cnnm3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	112,735,850 - 112,751,028 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cnnm3
75 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	626
Count of miRNA genes:	263
Interacting mature miRNAs:	336
Transcripts:	ENSRNOT00000021592
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	31250432	68875676	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	31250432	65651574	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	31456061	57460683	Rat

Markers in Region

RH144563

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	38,768,152 - 38,768,306 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	43,105,899 - 43,106,052	NCBI	Rnor6.0
Rnor_5.0	9	42,759,805 - 42,759,958	UniSTS	Rnor5.0
RGSC_v3.4	9	35,467,628 - 35,467,781	UniSTS	RGSC3.4
Celera	9	36,534,528 - 36,534,681	UniSTS
RH 3.4 Map	9	359.9	UniSTS
Cytogenetic Map	9	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021592 ⟹ ENSRNOP00000021591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	46,251,265 - 46,266,613 (+)	Ensembl
mRatBN7.2 Ensembl	9	38,755,390 - 38,770,740 (+)	Ensembl
Rnor_6.0 Ensembl	9	43,093,138 - 43,108,486 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115166 ⟹ ENSRNOP00000086110

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	46,251,265 - 46,266,609 (+)	Ensembl
mRatBN7.2 Ensembl	9	38,755,390 - 38,769,871 (+)	Ensembl

RefSeq Acc Id:

NM_001106901 ⟹ NP_001100371

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,251,265 - 46,266,613 (+)	NCBI
mRatBN7.2	9	38,755,390 - 38,770,740 (+)	NCBI
Rnor_6.0	9	43,093,138 - 43,108,486 (+)	NCBI
Rnor_5.0	9	42,747,044 - 42,762,392 (+)	NCBI
RGSC_v3.4	9	35,454,856 - 35,470,211 (+)	RGD
Celera	9	36,521,842 - 36,537,115 (+)	NCBI

Sequence:

show sequence

AGGCTGCGCCCGAGGCCCAGAAGGGGTAGCAGGCCATGGCGGCGGCTGCTGCGGCTGTGGCGGG
TTGGTTGGGCTGGGTGCTTGCTGCGTTCTGTCTGGGCAGCACCGCAGGGGAGGCGGCGCCGGGC
GCGGGACTGCTGAGCTTCTGCACGGAGGAGGACGGTGCTCCGGGCGCGGGCTCCCTACGCGGAA
GGGCAGCGCCGGAGGCCACTTTGTGCTTGCGACTCTTCTGCCCAGGCTTGGCCAACAGTTCCTG
GACCTGGGTAGCCCCGGAGGGCGCAGGCTGCCCCGAGGGCGGGCGGGCCACGGAGCCCTCGGAG
GCGGCCGCCCCCACGGGCGAGTGGCGCGCGCTGCTGCGCCTGCGCGCCGAGGCCGGCCACCCGC
GCTCCGCGCTGCTGGCAGTGCGCGTGGAGCCGGGCGGCGGGGCAGCTGAGGAGGCGGCGGCGCC
CTGGGCGCTGGGGCTGGGGGCGGCCGGGCTGCTGGCTCTGGCGGCTGTGGCTCGCGGCCTGCAG
CTGAGCGCGCTGGCGCTGGCGCCGGCCGAGGTGCAGGTGCTGCGCGAGAGCGGCTCGGAGGCGG
AGCGCGCGGCTGCGCGGCGCCTGGAACCCGCACGGCGCTGGGCCGGCTGCGCCCTGGGCGCGCT
GCTGCTTCTGGCCAGCCTGGCACAGGCGGCACTGGCGGTGCTGCTGTACGGGGCGGTGGGCCAG
CGCGCCGTTCCCGCCGTGCTGGGCTGCGCGGGGCTGGTGTTCCTGGTAGGTGAGGTGCTGCCGG
CCGCCGTGAGCGGACGCTGGGCTCTGGCGCTGGCGCCGCGCGCGCTGGGCCTCAGCCGCCTGGC
GGTGCTACTCACCTTGCCGGTGGCGCTGCCCGTCGGGCAGCTGCTGGAGCTGGCAGCGCGGCCC
GGGCGTCTGCGGGAGCGCGTGCTAGAGCTGGCGCGCGGCGGTGGCGACCCCTACAGCGACCTCA
GCAAGGGAGTGCTGCGCTACCGGACCGTGGAGGACGTGCTCACGCCGCTCGAAGACTGCTTTAT
GCTGGACTCCGGCACTGTCCTGGACTTCAGCGTCCTCGCAAGCATCATGCAGAGCGGCCACACG
CGCATCCCAGTGTTTGAGGAGGAGCGCTCCAACATCGTGGACATGCTGTACCTCAAAGACCTGG
CCTTCGTGGACCCCGAGGACTGCACGCCGCTCAGCACCATCACCCGATTCTACAACCATCCACT
CCACTTTGTCTTCAACGACACCAAACTGGACGCCGTCCTGGAGGAGTTCAAGAGAGGCAAGTCC
CACCTGGCCATCGTTCAGAAGGTGAACAATGAGGGCGAGGGCGATCCCTTCTATGAGGTGCTGG
GCCTGGTCACCCTGGAGGACGTCATCGAGGAGATCATCAGGTCTGAGATCCTGGATGAGTCTGA
AGACTACTCAGACACAAAGGTGAAGAAGAAGGCCGTCACCCTGGGCGCCCCTCTCAAGCGGAAG
GAGGAATTCTCCTTATTCAAGGTGTCTGATGATGAATATAAAGTAAAAATCTCGCCTCAGCTGC
TCCTGGCCACCCAGCGCTTCCTTTCCCGAGAGGTGGATGTGTTCAGCCCATTGCGAATCTCTGA
GAAAGTCTTGCTGCACCTGCTGAAGCATCCCAGTGTCAACCAGGAGGTGAAGTTTGACGAGAGC
AACCGCTTGGCCACACACCATTATTTGTACCAGCGCAGCCAGCCAGTAGATTACTTCATTCTCA
TCCTGCAGGGCAGGGTCGAGGTGGAAATCGGGAAAGAGGGCCTGAAGTTCGAGAACGGGGCCTT
CACATACTATGGCGTGTCCGCCCTGACAGCTCCATCTTCAGCTCATCAGTCCCCAGTGTCTTCA
CGCCAGCTCATCCGCCATGACTTGCAGCCTGAACCAGCGGACAGTACCCGCTCCTGCACGTACT
GTCCTGACTACACTGTGAGGGCCCTTTCTGACCTGCAGCTCATTAAGGTCACACGGCTGCAGTA
CCTTAATGCACTCCTGGCTACCCGAGCCCAGAGCTTACCTCCATCTCCAGAGAACGCTGAGCTC
CAGGCCATCCCGGGCAGCCAGACCAGGCTCCTTGGTGACAAATCCAGAGAGACAGCAGGGCCCA
GCAGCAGCAGACGCAGCATCCCAGTGGAGGAGAGCCCTGGGCGGAACCCAGGAGTGTAACTGCT
TGCCACTCAGCCCCGAGCTGGGAATGGACAAGCTCGTGGGGAGCTGGGACAGCCAAGCAGGAGC
TTCATACCAGCCCATCCCCACCTATCCTGGCCACGTTTTAGATGGCCCTTAGAAGCTGTGGGTC
CTGGGCCTCCTCAGTGCCAGAGCCTCCAGCCCCTCTGTTGTCCTTGAGGAGATGGGATTAACAG
AGCAACCCTCCAGAAGCCTGTTTCTGAGGGGACAAAAGAAACAGCATCATCTCTAGTCCCGAAG
ACCCAGTGCTGTAACAGCACAGTGTGTGTGTCTCCCTGAGCCCAGTGCCTTCACATGGCCTGGG
CCTGTGCTCATTTTGCTTTTGATTAGCCTGTCACTGGCACTACTCTGAGCAAACCAGGAGTGCT
GGCTTTAGATGAAAGTGTTCAAATCCATGGCCCTGCCATGTACTTTTTGGCTTCTCTTACAATG
CTGTATTTTGATTCATGAACCCCAGTTTTTTCTGTGTGCCAAATCTAAGAGCAGAGCTCCCCAA
TAAGTTGGTGCCCCGGTTCTGCTCCCTCCTGTGGAGGAAGCTCCTCTGACTCATAAGCAGGCTG
GCCCAGGGTCAGCTTGCATTTCCTCCCCACTTGGGGAAGCCATAACGGTATTGTCGGTTTCTGT
TTGAGGTCGTGTGGAAGGCTAAAGGCGGATGCTGACCGCCTGTTGTACCTGTCTTGTGCTTTTG
CCCTGAGCATCCAGGAAGATGTACAGCTGTAATGTCGGGAGCATCAGTCAGTTAGGGTCGGTTG
TGAGCCTGCTACGTCCTCGTCGCTTGCTAAGAAGTCAAGGTTTTCTTGTATCTCAGAAATATTC
AAATCCTTTGCACTTTTCTGTTTCCAGTGATGTTTTAGAGACACAGGAATGGGAAGACATTGTC
TTTTTATTTTAGTTTACCTGTACTTTCTTTCCACAGTTTCGGCTCTGGGACCATAGATTGGGGT
GGGAAGGAAGGATTTCTGGAACCTTCCTTAAAAGAATGCAGGCCCTTGTGAGACTCGGAGGCCC
GAGAAAAATAAATTCTAATGGAATATGCTCTAAGAACAAACCCAGGTCAGACACAAATAAAATT
TTCCTGTCTCCAAAACAGAATTCTAAATTTTGGCTGAACCTCAGAATCAAATTAGAACCTTGGT
TACCTGTGCTCACCTTGAACCGGCAGAGCTGTGGTCTTGAAGTAGTTTTAACTTCCTCCTAGAA
GAGTTCCCTATGCCTTTTGCCAGCTTCTCCTGATGTTAACATGTTAATTAACCTTGTTACATAT
ATCAAAACTAAAGTGTTAACACTGGAGTACTCTTAACTGTGGCCTTCATTTAGATTTTACTTTT
TCTTTGATTTCTGGTAACTGGGTTCCAGGGTAGGATGCCAGGATGCACTTGGAGCCATTGTTTC
TTTTGCTCTGACTTTGTCTTCTACAGTAATTGCAGATTCATAGGATATGGCAAAGACACAGAGC
CCACGCACCTTCATCTGGCTTCCCCCAGTGTTCCCATCTCATAAACTATGTAGTGGGCAGAACT
ATGGAGTTCTGCATCCCCGCCACCTCTGTGTAGACCTGAGTTCTGCTACCTTGGAAGACTAACC
CACTGTCCTGGCACTACCAGGGTACCCCCTGGACCGCCCTCAGAGCCACCTGCCCTGGCCCTAA
GCCCCGGGACCACTAGACTTTCCTCAGCTCTGTCACTTTGTCACTTCAAGAATGTCATAAGGGG
CCGAGCGGTGTGCATCCTTTGGGATTGACTCCTCCATTCATCGTAGTGCTCTGGAGACTGTTCC
AGGTCAGTGTGTCATGGCGTGTTCCTCCCCCTTGCCAAATGGTGTCCCATGGTGTATTCATTGT
CCTGTCAGAGGACATCTGGGTTGTTTCCAGTTCTTGGCCTTTTCAAAATAAAGCTGCTATGAAC
ATTCACGTACA

hide sequence

RefSeq Acc Id:

XM_006244756 ⟹ XP_006244818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,251,255 - 46,266,613 (+)	NCBI
mRatBN7.2	9	38,755,375 - 38,770,740 (+)	NCBI
Rnor_6.0	9	43,093,120 - 43,108,486 (+)	NCBI
Rnor_5.0	9	42,747,044 - 42,762,392 (+)	NCBI

Sequence:

show sequence

GGCGCGGGTGAGTGGGGTAGGCTGCGCCCGAGGCCCAGAAGGGGTAGCAGGCCATGGCGGCGGC
TGCTGCGGCTGTGGCGGGTTGGTTGGGCTGGGTGCTTGCTGCGTTCTGTCTGGGCAGCACCGCA
GGGGAGGCGGCGCCGGGCGCGGGACTGCTGAGCTTCTGCACGGAGGAGGACGGTGCTCCGGGCG
CGGGCTCCCTACGCGGAAGGGCAGCGCCGGAGGCCACTTTGTGCTTGCGACTCTTCTGCCCAGG
CTTGGCCAACAGTTCCTGGACCTGGGTAGCCCCGGAGGGCGCAGGCTGCCCCGAGGGCGGGCGG
GCCACGGAGCCCTCGGAGGCGGCCGCCCCCACGGGCGAGTGGCGCGCGCTGCTGCGCCTGCGCG
CCGAGGCCGGCCACCCGCGCTCCGCGCTGCTGGCAGTGCGCGTGGAGCCGGGCGGCGGGGCAGC
TGAGGAGGCGGCGGCGCCCTGGGCGCTGGGGCTGGGGGCGGCCGGGCTGCTGGCTCTGGCGGCT
GTGGCTCGCGGCCTGCAGCTGAGCGCGCTGGCGCTGGCGCCGGCCGAGGTGCAGGTGCTGCGCG
AGAGCGGCTCGGAGGCGGAGCGCGCGGCTGCGCGGCGCCTGGAACCCGCACGGCGCTGGGCCGG
CTGCGCCCTGGGCGCGCTGCTGCTTCTGGCCAGCCTGGCACAGGCGGCACTGGCGGTGCTGCTG
TACGGGGCGGTGGGCCAGCGCGCCGTTCCCGCCGTGCTGGGCTGCGCGGGGCTGGTGTTCCTGG
TAGGTGAGGTGCTGCCGGCCGCCGTGAGCGGACGCTGGGCTCTGGCGCTGGCGCCGCGCGCGCT
GGGCCTCAGCCGCCTGGCGGTGCTACTCACCTTGCCGGTGGCGCTGCCCGTCGGGCAGCTGCTG
GAGCTGGCAGCGCGGCCCGGGCGTCTGCGGGAGCGCGTGCTAGAGCTGGCGCGCGGCGGTGGCG
ACCCCTACAGCGACCTCAGCAAGGGAGTGCTGCGCTACCGGACCGTGGAGGACGTGCTCACGCC
GCTCGAAGACTGCTTTATGCTGGACTCCGGCACTGTCCTGGACTTCAGCGTCCTCGCAAGCATC
ATGCAGAGCGGCCACACGCGCATCCCAGTGTTTGAGGAGGAGCGCTCCAACATCGTGGACATGC
TGTACCTCAAAGACCTGGCCTTCGTGGACCCCGAGGACTGCACGCCGCTCAGCACCATCACCCG
ATTCTACAACCATCCACTCCACTTTGTCTTCAACGACACCAAACTGGACGCCGTCCTGGAGGAG
TTCAAGAGAGGCAAGTCCCACCTGGCCATCGTTCAGAAGGTGAACAATGAGGGCGAGGGCGATC
CCTTCTATGAGGTGCTGGGCCTGGTCACCCTGGAGGACGTCATCGAGGAGATCATCAGGTCTGA
GATCCTGGATGAGTCTGAAGACTACTACACAAAGGTGAAGAAGAAGGCCGTCACCCTGGGCGCC
CCTCTCAAGCGGAAGGAGGAATTCTCCTTATTCAAGGTGTCTGATGATGAATATAAAGTAAAAA
TCTCGCCTCAGCTGCTCCTGGCCACCCAGCGCTTCCTTTCCCGAGAGGTGGATGTGTTCAGCCC
ATTGCGAATCTCTGAGAAAGTCTTGCTGCACCTGCTGAAGCATCCCAGTGTCAACCAGGAGGTG
AAGTTTGACGAGAGCAACCGCTTGGCCACACACCATTATTTGTACCAGCGCAGCCAGCCAGTAG
ATTACTTCATTCTCATCCTGCAGGGCAGGGTCGAGGTGGAAATCGGGAAAGAGGGCCTGAAGTT
CGAGAACGGGGCCTTCACATACTATGGCGTGTCCGCCCTGACAGCTCCATCTTCAGCTCATCAG
TCCCCAGTGTCTTCACGCCAGCTCATCCGCCATGACTTGCAGCCTGAACCAGCGGACAGTACCC
GCTCCTGCACGTACTGTCCTGACTACACTGTGAGGGCCCTTTCTGACCTGCAGCTCATTAAGGT
CACACGGCTGCAGTACCTTAATGCACTCCTGGCTACCCGAGCCCAGAGCTTACCTCCATCTCCA
GAGAACGCTGAGCTCCAGGCCATCCCGGGCAGCCAGACCAGGCTCCTTGGTGACAAATCCAGAG
AGACAGCAGGGCCCAGCAGCAGCAGACGCAGCATCCCAGTGGAGGAGAGCCCTGGGCGGAACCC
AGGAGTGTAACTGCTTGCCACTCAGCCCCGAGCTGGGAATGGACAAGCTCGTGGGGAGCTGGGA
CAGCCAAGCAGGAGCTTCATACCAGCCCATCCCCACCTATCCTGGCCACGTTTTAGATGGCCCT
TAGAAGCTGTGGGTCCTGGGCCTCCTCAGTGCCAGAGCCTCCAGCCCCTCTGTTGTCCTTGAGG
AGATGGGATTAACAGAGCAACCCTCCAGAAGCCTGTTTCTGAGGGGACAAAAGAAACAGCATCA
TCTCTAGTCCCGAAGACCCAGTGCTGTAACAGCACAGTGTGTGTGTCTCCCTGAGCCCAGTGCC
TTCACATGGCCTGGGCCTGTGCTCATTTTGCTTTTGATTAGCCTGTCACTGGCACTACTCTGAG
CAAACCAGGAGTGCTGGCTTTAGATGAAAGTGTTCAAATCCATGGCCCTGCCATGTACTTTTTG
GCTTCTCTTACAATGCTGTATTTTGATTCATGAACCCCAGTTTTTTCTGTGTGCCAAATCTAAG
AGCAGAGCTCCCCAATAAGTTGGTGCCCCGGTTCTGCTCCCTCCTGTGGAGGAAGCTCCTCTGA
CTCATAAGCAGGCTGGCCCAGGGTCAGCTTGCATTTCCTCCCCACTTGGGGAAGCCATAACGGT
ATTGTCGGTTTCTGTTTGAGGTCGTGTGGAAGGCTAAAGGCGGATGCTGACCGCCTGTTGTACC
TGTCTTGTGCTTTTGCCCTGAGCATCCAGGAAGATGTACAGCTGTAATGTCGGGAGCATCAGTC
AGTTAGGGTCGGTTGTGAGCCTGCTACGTCCTCGTCGCTTGCTAAGAAGTCAAGGTTTTCTTGT
ATCTCAGAAATATTCAAATCCTTTGCACTTTTCTGTTTCCAGTGATGTTTTAGAGACACAGGAA
TGGGAAGACATTGTCTTTTTATTTTAGTTTACCTGTACTTTCTTTCCACAGTTTCGGCTCTGGG
ACCATAGATTGGGGTGGGAAGGAAGGATTTCTGGAACCTTCCTTAAAAGAATGCAGGCCCTTGT
GAGACTCGGAGGCCCGAGAAAAATAAATTCTAATGGAATATGCTCTAAGAACAAACCCAGGTCA
GACACAAATAAAATTTTCCTGTCTCCAAAACAGAATTCTAAATTTTGGCTGAACCTCAGAATCA
AATTAGAACCTTGGTTACCTGTGCTCACCTTGAACCGGCAGAGCTGTGGTCTTGAAGTAGTTTT
AACTTCCTCCTAGAAGAGTTCCCTATGCCTTTTGCCAGCTTCTCCTGATGTTAACATGTTAATT
AACCTTGTTACATATATCAAAACTAAAGTGTTAACACTGGAGTACTCTTAACTGTGGCCTTCAT
TTAGATTTTACTTTTTCTTTGATTTCTGGTAACTGGGTTCCAGGGTAGGATGCCAGGATGCACT
TGGAGCCATTGTTTCTTTTGCTCTGACTTTGTCTTCTACAGTAATTGCAGATTCATAGGATATG
GCAAAGACACAGAGCCCACGCACCTTCATCTGGCTTCCCCCAGTGTTCCCATCTCATAAACTAT
GTAGTGGGCAGAACTATGGAGTTCTGCATCCCCGCCACCTCTGTGTAGACCTGAGTTCTGCTAC
CTTGGAAGACTAACCCACTGTCCTGGCACTACCAGGGTACCCCCTGGACCGCCCTCAGAGCCAC
CTGCCCTGGCCCTAAGCCCCGGGACCACTAGACTTTCCTCAGCTCTGTCACTTTGTCACTTCAA
GAATGTCATAAGGGGCCGAGCGGTGTGCATCCTTTGGGATTGACTCCTCCATTCATCGTAGTGC
TCTGGAGACTGTTCCAGGTCAGTGTGTCATGGCGTGTTCCTCCCCCTTGCCAAATGGTGTCCCA
TGGTGTATTCATTGTCCTGTCAGAGGACATCTGGGTTGTTTCCAGTTCTTGGCCTTTTCAAAAT
AAAGCTGCTATGAACATTCACGTACA

hide sequence

RefSeq Acc Id:

XM_006244757 ⟹ XP_006244819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,251,255 - 46,264,751 (+)	NCBI
mRatBN7.2	9	38,755,375 - 38,770,740 (+)	NCBI
Rnor_6.0	9	43,093,120 - 43,108,486 (+)	NCBI
Rnor_5.0	9	42,747,044 - 42,762,392 (+)	NCBI

Sequence:

show sequence

GGCGCGGGTGAGTGGGGTAGGCTGCGCCCGAGGCCCAGAAGGGGTAGCAGGCCATGGCGGCGGC
TGCTGCGGCTGTGGCGGGTTGGTTGGGCTGGGTGCTTGCTGCGTTCTGTCTGGGCAGCACCGCA
GGGGAGGCGGCGCCGGGCGCGGGACTGCTGAGCTTCTGCACGGAGGAGGACGGTGCTCCGGGCG
CGGGCTCCCTACGCGGAAGGGCAGCGCCGGAGGCCACTTTGTGCTTGCGACTCTTCTGCCCAGG
CTTGGCCAACAGTTCCTGGACCTGGGTAGCCCCGGAGGGCGCAGGCTGCCCCGAGGGCGGGCGG
GCCACGGAGCCCTCGGAGGCGGCCGCCCCCACGGGCGAGTGGCGCGCGCTGCTGCGCCTGCGCG
CCGAGGCCGGCCACCCGCGCTCCGCGCTGCTGGCAGTGCGCGTGGAGCCGGGCGGCGGGGCAGC
TGAGGAGGCGGCGGCGCCCTGGGCGCTGGGGCTGGGGGCGGCCGGGCTGCTGGCTCTGGCGGCT
GTGGCTCGCGGCCTGCAGCTGAGCGCGCTGGCGCTGGCGCCGGCCGAGGTGCAGGTGCTGCGCG
AGAGCGGCTCGGAGGCGGAGCGCGCGGCTGCGCGGCGCCTGGAACCCGCACGGCGCTGGGCCGG
CTGCGCCCTGGGCGCGCTGCTGCTTCTGGCCAGCCTGGCACAGGCGGCACTGGCGGTGCTGCTG
TACGGGGCGGTGGGCCAGCGCGCCGTTCCCGCCGTGCTGGGCTGCGCGGGGCTGGTGTTCCTGG
TAGGTGAGGTGCTGCCGGCCGCCGTGAGCGGACGCTGGGCTCTGGCGCTGGCGCCGCGCGCGCT
GGGCCTCAGCCGCCTGGCGGTGCTACTCACCTTGCCGGTGGCGCTGCCCGTCGGGCAGCTGCTG
GAGCTGGCAGCGCGGCCCGGGCGTCTGCGGGAGCGCGTGCTAGAGCTGGCGCGCGGCGGTGGCG
ACCCCTACAGCGACCTCAGCAAGGGAGTGCTGCGCTACCGGACCGTGGAGGACGTGCTCACGCC
GCTCGAAGACTGCTTTATGCTGGACTCCGGCACTGTCCTGGACTTCAGCGTCCTCGCAAGCATC
ATGCAGAGCGGCCACACGCGCATCCCAGTGTTTGAGGAGGAGCGCTCCAACATCGTGGACATGC
TGTACCTCAAAGACCTGGCCTTCGTGGACCCCGAGGACTGCACGCCGCTCAGCACCATCACCCG
ATTCTACAACCATCCACTCCACTTTGTCTTCAACGACACCAAACTGGACGCCGTCCTGGAGGAG
TTCAAGAGAGGCAAGTCCCACCTGGCCATCGTTCAGAAGGTGAACAATGAGGGCGAGGGCGATC
CCTTCTATGAGGTGCTGGGCCTGGTCACCCTGGAGGACGTCATCGAGGAGATCATCAGGTCTGA
GATCCTGGATGAGTCTGAAGACTACTCAGACACAAAGGTGAAGAAGAAGGCCGTCACCCTGGGC
GCCCCTCTCAAGCGGAAGGAGGAATTCTCCTTATTCAAGGTGTCTGATGATGAATATAAAGTAA
AAATCTCGCCTCAGCTGCTCCTGGCCACCCAGCGCTTCCTTTCCCGAGAGGTGGATGTGTTCAG
CCCATTGCGAATCTCTGAGAAAGTCTTGCTGCACCTGCTGAAGCATCCCAGTGTCAACCAGGAG
GTGAAGTTTGACGAGAGCAACCGCTTGGCCACACACCATTATTTGTACCAGCGCAGCCAGCCAG
TAGATTACTTCATTCTCATCCTGCAGGGCAGGGTCGAGGTGGAAATCGGGAAAGAGGGCCTGAA
GTTCGAGAACGGGGCCTTCACATACTATGGCGTGTCCGCCCTGACAGCTCCATCTTCAGCTCAT
CAGTCCCCAGTGTCTTCACGCCAGCTCATCCGCCATGACTTGCAGCCTGAACCAGCGGACAGTA
CCCGCTCCTGCACGTACTGTCCTGACTACACTGTGAGGGCCCTTTCTGACCTGCAGCTCATTAA
GGTCACACGGCTGCAGTACCTTAATGCACTCCTGGCTACCCGAGCCCAGAGCTTACCTCCATCT
CCAGAGAACGCTGAGCTCCAGGCCATCCCGGGCAGCCAGACCAGGCTCCTTGGTGACAAATCCA
GAGAGACAGCAGCCTTCCCAGTTCACCTTCCCCTCTTTGGCACACTTGGAAACTGCAGTTGATA
AATGACTGTGGACTAGTGAGCATTTTTTGTTTTAAGAGAACACCAAGGGCCCAGCAGCAGCAGA
CGCAGCATCCCAGTGGAGGAGAGCCCTGGGCGGAACCCAGGAGTGTAACTGCTTGCCACTCAGC
CCCGAGCTGGGAATGGACAAGCTCGTGGGGAGCTGGGACAGCCAAGCAGGAGCTTCATACCAGC
CCATCCCCACCTATCCTGGCCACGTTTTAGATGGCCCTTAGAAGCTGTGGGTCCTGGGCCTCCT
CAGTGCCAGAGCCTCCAGCCCCTCTGTTGTCCTTGAGGAGATGGGATTAACAGAGCAACCCTCC
AGAAGCCTGTTTCTGAGGGGACAAAAGAAACAGCATCATCTCTAGTCCCGAAGACCCAGTGCTG
TAACAGCACAGTGTGTGTGTCTCCCTGAGCCCAGTGCCTTCACATGGCCTGGGCCTGTGCTCAT
TTTGCTTTTGATTAGCCTGTCACTGGCACTACTCTGAGCAAACCAGGAGTGCTGGCTTTAGATG
AAAGTGTTCAAATCCATGGCCCTGCCATGTACTTTTTGGCTTCTCTTACAATGCTGTATTTTGA
TTCATGAACCCCAGTTTTTTCTGTGTGCCAAATCTAAGAGCAGAGCTCCCCAATAAGTTGGTGC
CCCGGTTCTGCTCCCTCCTGTGGAGGAAGCTCCTCTGACTCATAAGCAGGCTGGCCCAGGGTCA
GCTTGCATTTCCTCCCCACTTGGGGAAGCCATAACGGTATTGTCGGTTTCTGTTTGAGGTCGTG
TGGAAGGCTAAAGGCGGATGCTGACCGCCTGTTGTACCTGTCTTGTGCTTTTGCCCTGAGCATC
CAGGAAGATGTACAGCTGTAATGTCGGGAGCATCAGTCAGTTAGGGTCGGTTGTGAGCCTGCTA
CGTCCTCGTCGCTTGCTAAGAAGTCAAGGTTTTCTTGTATCTCAGAAATATTCAAATCCTTTGC
ACTTTTCTGTTTCCAGTGATGTTTTAGAGACACAGGAATGGGAAGACATTGTCTTTTTATTTTA
GTTTACCTGTACTTTCTTTCCACAGTTTCGGCTCTGGGACCATAGATTGGGGTGGGAAGGAAGG
ATTTCTGGAACCTTCCTTAAAAGAATGCAGGCCCTTGTGAGACTCGGAGGCCCGAGAAAAATAA
ATTCTAATGGAATATGCTCTAAGAACAAACCCAGGTCAGACACAAATAAAATTTTCCTGTCTCC
AAAACAGAATTCTAAATTTTGGCTGAACCTCAGAATCAAATTAGAACCTTGGTTACCTGTGCTC
ACCTTGAACCGGCAGAGCTGTGGTCTTGAAGTAGTTTTAACTTCCTCCTAGAAGAGTTCCCTAT
GCCTTTTGCCAGCTTCTCCTGATGTTAACATGTTAATTAACCTTGTTACATATATCAAAACTAA
AGTGTTAACACTGGAGTACTCTTAACTGTGGCCTTCATTTAGATTTTACTTTTTCTTTGATTTC
TGGTAACTGGGTTCCAGGGTAGGATGCCAGGATGCACTTGGAGCCATTGTTTCTTTTGCTCTGA
CTTTGTCTTCTACAGTAATTGCAGATTCATAGGATATGGCAAAGACACAGAGCCCACGCACCTT
CATCTGGCTTCCCCCAGTGTTCCCATCTCATAAACTATGTAGTGGGCAGAACTATGGAGTTCTG
CATCCCCGCCACCTCTGTGTAGACCTGAGTTCTGCTACCTTGGAAGACTAACCCACTGTCCTGG
CACTACCAGGGTACCCCCTGGACCGCCCTCAGAGCCACCTGCCCTGGCCCTAAGCCCCGGGACC
ACTAGACTTTCCTCAGCTCTGTCACTTTGTCACTTCAAGAATGTCATAAGGGGCCGAGCGGTGT
GCATCCTTTGGGATTGACTCCTCCATTCATCGTAGTGCTCTGGAGACTGTTCCAGGTCAGTGTG
TCATGGCGTGTTCCTCCCCCTTGCCAAATGGTGTCCCATGGTGTATTCATTGTCCTGTCAGAGG
ACATCTGGGTTGTTTCCAGTTCTTGGCCTTTTCAAAATAAAGCTGCTATGAACATTCACGTACA

hide sequence

RefSeq Acc Id:

XM_039083219 ⟹ XP_038939147

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,251,252 - 46,260,297 (+)	NCBI
mRatBN7.2	9	38,755,374 - 38,764,319 (+)	NCBI

RefSeq Acc Id:

XM_063266893 ⟹ XP_063122963

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,251,255 - 46,264,751 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100371	(Get FASTA)	NCBI Sequence Viewer
	XP_006244818	(Get FASTA)	NCBI Sequence Viewer
	XP_006244819	(Get FASTA)	NCBI Sequence Viewer
	XP_038939147	(Get FASTA)	NCBI Sequence Viewer
	XP_063122963	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL99273	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021591
	ENSRNOP00000021591.4
	ENSRNOP00000086110
	ENSRNOP00000086110.1

RefSeq Acc Id:	NP_001100371 ⟸ NM_001106901
- Peptide Label:	precursor
- UniProtKB:	D4ACK7 (UniProtKB/TrEMBL), A6IND7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAAAAVAGWLGWVLAAFCLGSTAGEAAPGAGLLSFCTEEDGAPGAGSLRGRAAPEATLCLRL FCPGLANSSWTWVAPEGAGCPEGGRATEPSEAAAPTGEWRALLRLRAEAGHPRSALLAVRVEPG GGAAEEAAAPWALGLGAAGLLALAAVARGLQLSALALAPAEVQVLRESGSEAERAAARRLEPAR RWAGCALGALLLLASLAQAALAVLLYGAVGQRAVPAVLGCAGLVFLVGEVLPAAVSGRWALALA PRALGLSRLAVLLTLPVALPVGQLLELAARPGRLRERVLELARGGGDPYSDLSKGVLRYRTVED VLTPLEDCFMLDSGTVLDFSVLASIMQSGHTRIPVFEEERSNIVDMLYLKDLAFVDPEDCTPLS TITRFYNHPLHFVFNDTKLDAVLEEFKRGKSHLAIVQKVNNEGEGDPFYEVLGLVTLEDVIEEI IRSEILDESEDYSDTKVKKKAVTLGAPLKRKEEFSLFKVSDDEYKVKISPQLLLATQRFLSREV DVFSPLRISEKVLLHLLKHPSVNQEVKFDESNRLATHHYLYQRSQPVDYFILILQGRVEVEIGK EGLKFENGAFTYYGVSALTAPSSAHQSPVSSRQLIRHDLQPEPADSTRSCTYCPDYTVRALSDL QLIKVTRLQYLNALLATRAQSLPPSPENAELQAIPGSQTRLLGDKSRETAGPSSSRRSIPVEES PGRNPGV hide sequence

RefSeq Acc Id:	XP_006244819 ⟸ XM_006244757
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A1K3 (UniProtKB/TrEMBL), A6IND7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAAAAVAGWLGWVLAAFCLGSTAGEAAPGAGLLSFCTEEDGAPGAGSLRGRAAPEATLCLRL FCPGLANSSWTWVAPEGAGCPEGGRATEPSEAAAPTGEWRALLRLRAEAGHPRSALLAVRVEPG GGAAEEAAAPWALGLGAAGLLALAAVARGLQLSALALAPAEVQVLRESGSEAERAAARRLEPAR RWAGCALGALLLLASLAQAALAVLLYGAVGQRAVPAVLGCAGLVFLVGEVLPAAVSGRWALALA PRALGLSRLAVLLTLPVALPVGQLLELAARPGRLRERVLELARGGGDPYSDLSKGVLRYRTVED VLTPLEDCFMLDSGTVLDFSVLASIMQSGHTRIPVFEEERSNIVDMLYLKDLAFVDPEDCTPLS TITRFYNHPLHFVFNDTKLDAVLEEFKRGKSHLAIVQKVNNEGEGDPFYEVLGLVTLEDVIEEI IRSEILDESEDYSDTKVKKKAVTLGAPLKRKEEFSLFKVSDDEYKVKISPQLLLATQRFLSREV DVFSPLRISEKVLLHLLKHPSVNQEVKFDESNRLATHHYLYQRSQPVDYFILILQGRVEVEIGK EGLKFENGAFTYYGVSALTAPSSAHQSPVSSRQLIRHDLQPEPADSTRSCTYCPDYTVRALSDL QLIKVTRLQYLNALLATRAQSLPPSPENAELQAIPGSQTRLLGDKSRETAAFPVHLPLFGTLGN CS hide sequence

RefSeq Acc Id:	XP_006244818 ⟸ XM_006244756
- Peptide Label:	isoform X1
- UniProtKB:	A6IND7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAAAAVAGWLGWVLAAFCLGSTAGEAAPGAGLLSFCTEEDGAPGAGSLRGRAAPEATLCLRL FCPGLANSSWTWVAPEGAGCPEGGRATEPSEAAAPTGEWRALLRLRAEAGHPRSALLAVRVEPG GGAAEEAAAPWALGLGAAGLLALAAVARGLQLSALALAPAEVQVLRESGSEAERAAARRLEPAR RWAGCALGALLLLASLAQAALAVLLYGAVGQRAVPAVLGCAGLVFLVGEVLPAAVSGRWALALA PRALGLSRLAVLLTLPVALPVGQLLELAARPGRLRERVLELARGGGDPYSDLSKGVLRYRTVED VLTPLEDCFMLDSGTVLDFSVLASIMQSGHTRIPVFEEERSNIVDMLYLKDLAFVDPEDCTPLS TITRFYNHPLHFVFNDTKLDAVLEEFKRGKSHLAIVQKVNNEGEGDPFYEVLGLVTLEDVIEEI IRSEILDESEDYYTKVKKKAVTLGAPLKRKEEFSLFKVSDDEYKVKISPQLLLATQRFLSREVD VFSPLRISEKVLLHLLKHPSVNQEVKFDESNRLATHHYLYQRSQPVDYFILILQGRVEVEIGKE GLKFENGAFTYYGVSALTAPSSAHQSPVSSRQLIRHDLQPEPADSTRSCTYCPDYTVRALSDLQ LIKVTRLQYLNALLATRAQSLPPSPENAELQAIPGSQTRLLGDKSRETAGPSSSRRSIPVEESP GRNPGV hide sequence

Ensembl Acc Id:

ENSRNOP00000021591 ⟸ ENSRNOT00000021592

RefSeq Acc Id:	XP_038939147 ⟸ XM_039083219
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000086110 ⟸ ENSRNOT00000115166

RefSeq Acc Id:	XP_063122963 ⟸ XM_063266893
- Peptide Label:	isoform X3
- UniProtKB:	A6IND7 (UniProtKB/TrEMBL)

Protein Domains

CBS CNNM transmembrane

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACK7-F1-model_v2	AlphaFold	D4ACK7	1-711	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696603

Promoter ID:

EPDNEW_R7128

Type:

initiation region

Name:

Cnnm3_1

Description:

cyclin and CBS domain divalent metal cation transport mediator3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	43,093,138 - 43,093,198	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307926	AgrOrtholog
BioCyc Gene	G2FUF-27809	BioCyc
Ensembl Genes	ENSRNOG00000016032	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021592	ENTREZGENE
	ENSRNOT00000021592.8	UniProtKB/TrEMBL
	ENSRNOT00000115166	ENTREZGENE
	ENSRNOT00000115166.2	UniProtKB/TrEMBL
Gene3D-CATH	3.10.580.10	UniProtKB/TrEMBL
InterPro	ACDP	UniProtKB/TrEMBL
	CBS_dom_sf	UniProtKB/TrEMBL
	CNNM	UniProtKB/TrEMBL
	Cysta_beta_synth_core	UniProtKB/TrEMBL
	Ion_transp-like_CBS	UniProtKB/TrEMBL
KEGG Report	rno:301345	UniProtKB/TrEMBL
NCBI Gene	301345	ENTREZGENE
PANTHER	METAL TRANSPORTER CNNM3	UniProtKB/TrEMBL
	PTHR12064	UniProtKB/TrEMBL
Pfam	CBS	UniProtKB/TrEMBL
	CNBH_CNNM2_C	UniProtKB/TrEMBL
PhenoGen	Cnnm3	PhenoGen
PROSITE	CBS	UniProtKB/TrEMBL
	CNNM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016032	RatGTEx
Superfamily-SCOP	SSF54631	UniProtKB/TrEMBL
UniProt	A0A8I6A1K3	ENTREZGENE, UniProtKB/TrEMBL
	A6IND7	ENTREZGENE, UniProtKB/TrEMBL
	D4ACK7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-08-13	Cnnm3	cyclin and CBS domain divalent metal cation transport mediator 3	Cnnm3	cyclin M3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Cnnm3	cyclin M3	Cnnm3_predicted	cyclin M3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cnnm3_predicted	cyclin M3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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