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Gene: Mdh1b (malate dehydrogenase 1B) Rattus norvegicus

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Symbol:

Mdh1b

Name:

malate dehydrogenase 1B

RGD ID:

1307874

Description:

Predicted to enable L-malate dehydrogenase (NAD+) activity. Predicted to be involved in NAD+ metabolic process; dicarboxylic acid metabolic process; and tricarboxylic acid cycle. Orthologous to human MDH1B (malate dehydrogenase 1B); INTERACTS WITH bisphenol A; bromobenzene; decabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC316444; malate dehydrogenase 1B, NAD (soluble); putative malate dehydrogenase 1B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MDH1B (malate dehydrogenase 1B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Mdh1b (malate dehydrogenase 1B, NAD (soluble))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mdh1b (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MDH1B (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MDH1B (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mdh1b (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MDH1B (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MDH1B (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mdh1b (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Mdh1b (malate dehydrogenase 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	IQCK (IQ motif containing K)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MDH1B (malate dehydrogenase 1B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MDH1B (malate dehydrogenase 1B)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mdh1b (malate dehydrogenase 1B, NAD (soluble))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mdh1b (malate dehydrogenase 1B, NAD (soluble))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mdh1b (malate dehydrogenase 1B, NAD (soluble))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mdh1b (malate dehydrogenase 1B, NAD (soluble))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mdh1b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mdh1b	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	72,614,185 - 72,661,820 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	72,613,340 - 72,661,745 (-)	Ensembl				GRCr8
mRatBN7.2	9	65,120,370 - 65,168,008 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	65,119,029 - 65,167,933 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	73,617,360 - 73,674,383 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	78,770,729 - 78,818,072 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	77,162,001 - 77,209,549 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	70,403,612 - 70,450,204 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	70,404,093 - 70,450,170 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	72,123,041 - 72,169,621 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	62,368,173 - 62,418,212 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	62,531,570 - 62,578,420 (-)	NCBI		Celera
RGSC_v3.1	9	62,555,822 - 62,565,152 (-)	NCBI
Cytogenetic Map	9	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bromobenzene (EXP)

butanal (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

choline (ISO)

cisplatin (ISO)

decabromodiphenyl ether (EXP)

folic acid (ISO)

furan (EXP)

gold atom (ISO)

gold(0) (ISO)

L-methionine (ISO)

methylmercury chloride (ISO)

okadaic acid (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

malate metabolic process (IBA,IEA)

NAD+ metabolic process (IBA)

oxaloacetate metabolic process (IBA)

tricarboxylic acid cycle (IBA,IEA)

Molecular Function

catalytic activity (IEA)

L-malate dehydrogenase (NAD+) activity (IBA)

malate dehydrogenase activity (IEA)

oxidoreductase activity (IEA)

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Mdh1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	72,614,185 - 72,661,820 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	72,613,340 - 72,661,745 (-)	Ensembl				GRCr8
mRatBN7.2	9	65,120,370 - 65,168,008 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	65,119,029 - 65,167,933 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	73,617,360 - 73,674,383 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	78,770,729 - 78,818,072 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	77,162,001 - 77,209,549 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	70,403,612 - 70,450,204 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	70,404,093 - 70,450,170 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	72,123,041 - 72,169,621 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	62,368,173 - 62,418,212 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	62,531,570 - 62,578,420 (-)	NCBI		Celera
RGSC_v3.1	9	62,555,822 - 62,565,152 (-)	NCBI
Cytogenetic Map	9	q32	NCBI

MDH1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	206,737,763 - 206,765,328 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	206,737,763 - 206,765,328 (-)	Ensembl			hg38	GRCh38
GRCh37	2	207,602,487 - 207,630,052 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	207,310,732 - 207,338,295 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	201,363,918 - 201,391,481 (-)	NCBI		Celera
Cytogenetic Map	2	q33.3	NCBI
HuRef	2	199,451,956 - 199,479,592 (-)	NCBI		HuRef
CHM1_1	2	207,608,333 - 207,635,912 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	207,219,869 - 207,247,441 (-)	NCBI		T2T-CHM13v2.0

Mdh1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	63,726,732 - 63,769,707 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	63,737,978 - 63,769,477 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	63,698,827 - 63,730,318 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	63,698,819 - 63,730,318 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	63,745,401 - 63,776,892 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	63,633,103 - 63,664,594 (-)	NCBI		MGSCv36	mm8
Celera	1	64,225,205 - 64,256,797 (-)	NCBI		Celera
Cytogenetic Map	1	C2	NCBI
cM Map	1	32.31	NCBI

Mdh1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	8,212,523 - 8,243,877 (+)	Ensembl
ChiLan1.0	NW_004955457	8,213,271 - 8,268,350 (+)	NCBI	ChiLan1.0	ChiLan1.0

MDH1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	109,346,030 - 109,373,975 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	109,361,035 - 109,388,954 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	93,972,114 - 93,999,996 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	212,100,285 - 212,128,079 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

MDH1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	15,255,894 - 15,287,374 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	15,256,507 - 15,287,341 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	16,139,898 - 16,171,502 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	15,192,510 - 15,224,134 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	15,193,125 - 15,224,083 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	15,144,755 - 15,170,047 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	15,117,799 - 15,143,071 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	15,121,968 - 15,147,265 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mdh1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	163,415,512 - 163,439,578 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936631	3,057,345 - 3,074,350 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936631	3,050,689 - 3,074,396 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MDH1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	109,990,050 - 110,021,416 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	109,989,095 - 110,021,237 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	121,598,070 - 121,617,709 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MDH1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	92,511,706 - 92,550,302 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	92,510,429 - 92,550,598 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	106,813,216 - 106,851,632 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mdh1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624765	9,209,923 - 9,247,753 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624765	9,209,653 - 9,247,651 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mdh1b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	137,650,864 - 137,690,355 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Mdh1b
253 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	32
Count of miRNA genes:	31
Interacting mature miRNAs:	32
Transcripts:	ENSRNOT00000017207
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1598849	Memor17	Memory QTL 17	2.2		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	57460497	78547958	Rat
1578659	Tspe1	Trichinella spiralis expulsion QTL 1	4.8		parasite quantity (VT:0010441)	logarithm of the intestinal adult Trichinella spiralis count (CMO:0002024)	9	68875497	73185088	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat

Markers in Region

D1Mit466

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	65,106,068 - 65,106,285 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	70,389,799 - 70,390,015	NCBI	Rnor6.0
Rnor_5.0	9	72,183,229 - 72,183,445	UniSTS	Rnor5.0
RGSC_v3.4	9	62,352,255 - 62,352,471	UniSTS	RGSC3.4
Celera	9	62,517,680 - 62,517,896	UniSTS
Cytogenetic Map	9	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	4	21	154	91	90	59	29	59	6	229	74	6	137	77	92	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017207 ⟹ ENSRNOP00000017207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	72,614,195 - 72,661,745 (-)	Ensembl
mRatBN7.2 Ensembl	9	65,120,375 - 65,167,933 (-)	Ensembl
Rnor_6.0 Ensembl	9	70,404,093 - 70,450,170 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086391 ⟹ ENSRNOP00000069626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	72,613,340 - 72,661,745 (-)	Ensembl
mRatBN7.2 Ensembl	9	65,119,029 - 65,167,933 (-)	Ensembl
Rnor_6.0 Ensembl	9	70,404,094 - 70,449,796 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097252 ⟹ ENSRNOP00000077547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	72,613,340 - 72,660,849 (-)	Ensembl
mRatBN7.2 Ensembl	9	65,119,029 - 65,167,933 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000171413 ⟹ ENSRNOP00000106292

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	72,614,365 - 72,661,745 (-)	Ensembl

RefSeq Acc Id:

NM_001108221 ⟹ NP_001101691

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,195 - 72,661,745 (-)	NCBI
mRatBN7.2	9	65,120,375 - 65,167,933 (-)	NCBI
Rnor_6.0	9	70,404,093 - 70,450,170 (-)	NCBI
Rnor_5.0	9	72,123,041 - 72,169,621 (+)	NCBI
RGSC_v3.4	9	62,368,173 - 62,418,212 (-)	RGD
Celera	9	62,531,570 - 62,578,420 (-)	RGD

Sequence:

show sequence

TGGAAACCGTGACGCCCGGGTTTCAGTTTCTAGGTCTTGCTAGAAATCATGGCCAAATTTGTGA
TCGCCGGTAAAGCAAACTGCCCATATTATGCTAAGGCAGAACTTCTGGCAGACTATTTACAAAA
GAATCTTCCTGACTTTCGGATTTTTAAGATCACGAAACATCCTGACGAGTGGGAGGAGTGGCTG
GAAGATGTCTGTGAAAGGAATATGTGGGACCACAGAATCTCCCCCATTATCTGGAGAGAGTTGC
TGGATCGTGGAGGCAAGGGCTTGCTTTTGGGAGGATACAATGAGTTTCTGGAACATGCCCAGCT
TTACTATGGCATCACTTCCAGCATGACGACAGAGCTGATGATGATCATCGCCCAAGAAAACATG
GAGACACATACAGAACAAGAGTTAGATAAAGAAAACTTGAAAGACCTCATCAGTCCCTTGCAGG
TCTGGATTACCAGTGCAGGTTCTCGTGTGTGCTGCCACTTAATTCCCCTCTTGCTAAGTGGGGA
AGTGTTCGGGATGCAGGCAGAGATCAGCCTGACCCTGTTTGACCAGGAGCAGAGGAGGGAATGC
CTCAGTAACATAGTGATGGAAACTGAGAATCTGGCCTCCCCAGTCCTGCGCACTGTCTCCTTCT
GCACGACGGTAAAGGATGCCTTCCTTCAGGCTGAAGTCATCATCATCCTGGATGACAGCACGGA
CGAGGAAGTGTACAACATGGAGAGCTGCCTTCGAAGCAGGGTACCACTGTGCCGCCTCTATGGT
TACCTGATAGAGAAAAATGCTCACAAATCTGTCAAAGTCATCGTGGGAGGGAAAAGCTTTCTGA
ATCTGAAAACAACTTTGCTCATACAATATGCACCTAGCCTCGCAAGCAACATCATCGCAGTGGC
TCTGGGGTTAGAAGGCCAAGCAAAAGCAGTACTGGCCCGAAAGATGAAAACAATTCCATCCAGA
ATCAAAGATGTGATAATTTGGGGTAATATCACTGGAAATAACTACGTTGATCTGAGGAAAGCAA
AAGTTTACAACTATGAGAGTGCTATTAGGGGACCTCCTGGATATTACCACTCTGTGTTAAGCTT
GATTTTTGACAGAGAGTGGATAACAAAAGAGTTTGTGAGGACGCTTAAAGACTTGAGCAGCACT
GGAAAACAATTTGGAGGCATTTTGGCAGCACACAGCATAGCCACCACCCTGAAGTACTGGTACT
ATGGCTCACCACCTGGAGAGATCGTTTCCTTGGGTGTAATGAGTGAAGGCCAGTTCGGCATTCC
TGAAGGGATTGTCTTTTCTATGCCAGTGAAATTTGAGAATGGAACTTGGGTGGTCCTTACTGAT
TTGGAAGACCTTTCGCTCAGCGAGAAGATAATAAACAGGCTCACAGGTGATCTGATTCAGGAGA
AACTTGTTGCATCTGGAGACTTATTAACTTTTCAACCAATTGAAGAAGACTCTGATGTAAAACA
TGGGGACCGTGAAAAGCTTCAACCAGAACAAACATGACGGAAAGACAGAAAGACTGGCGAGTGT
CTGCACTTAGGGAAAAGCAATTAAATGAAACAGGCCCCAAACCTGGTAGAGTCACATCCTACCA
CTTTTGCCAATTACTGTATGTCCTCAAAAACAAATGAACACAAACCACTGTTTTA

hide sequence

RefSeq Acc Id:

XM_017596470 ⟹ XP_017451959

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,661,723 (-)	NCBI
mRatBN7.2	9	65,120,370 - 65,167,610 (-)	NCBI
Rnor_6.0	9	70,403,614 - 70,449,042 (-)	NCBI

Sequence:

show sequence

AATTTAGCCGTGGATAATAGGGAGTAGAGCTGGAGTGCGCTTATAAAGACCATATATGGTTGTG
ACTGGAAACTCAAAGCCTTCAGGTAAAGCAAACTGCCCATATTATGCTAAGGCAGAACTTCTGG
CAGACTATTTACAAAAGAATCTTCCTGACTTTCGGATTTTTAAGATCACGAAACATCCTGACGA
GTGGGAGGAGTGGCTGGAAGATGTCTGTGAAAGGAATATGTGGGACCACAGAATCTCCCCCATT
ATCTGGAGAGAGTTGCTGGATCGTGGAGGCAAGGGCTTGCTTTTGGGAGGATACAATGAGTTTC
TGGAACATGCCCAGCTTTACTATGGCATCACTTCCAGCATGACGACAGAGCTGATGATGATCAT
CGCCCAAGAAAACATGGAGACACATACAGAACAAGAGTTAGATAAAGAAAACTTGAAAGACCTC
ATCAGTCCCTTGCAGGTCTGGATTACCAGTGCAGGTTCTCGTGTGTGCTGCCACTTAATTCCCC
TCTTGCTAAGTGGGGAAGTGTTCGGGATGCAGGCAGAGATCAGCCTGACCCTGTTTGACCAGGA
GCAGAGGAGGGAATGCCTCAGTAACATAGTGATGGAAACTGAGAATCTGGCCTCCCCAGTCCTG
CGCACTGTCTCCTTCTGCACGACGGTAAAGGATGCCTTCCTTCAGGCTGAAGTCATCATCATCC
TGGATGACAGCACGGACGAGGAAGTGTACAACATGGAGAGCTGCCTTCGAAGCAGGGTACCACT
GTGCCGCCTCTATGGTTACCTGATAGAGAAAAATGCTCACAAATCTGTCAAAGTCATCGTGGGA
GGGAAAAGCTTTCTGAATCTGAAAACAACTTTGCTCATACAATATGCACCTAGCCTCGCAAGCA
ACATCATCGCAGTGGCTCTGGGGTTAGAAGGCCAAGCAAAAGCAGTACTGGCCCGAAAGATGAA
AACAATTCCATCCAGAATCAAAGATGTGATAATTTGGGGTAATATCACTGGAAATAACTACGTT
GATCTGAGGAAAGCAAAAGTTTACAACTATGAGAGTGCTATTAGGGGACCTCCTGGATATTACC
ACTCTGTGTTAAGCTTGATTTTTGACAGAGAGTGGATAACAAAAGAGTTTGTGAGGACGCTTAA
AGACTTGAGCAGCACTGGAAAACAATTTGGAGGCATTTTGGCAGCACACAGCATAGCCACCACC
CTGAAGTACTGGTACTATGGCTCACCACCTGGAGAGATCGTTTCCTTGGGTGTAATGAGTGAAG
GCCAGTTCGGCATTCCTGAAGGGATTGTCTTTTCTATGCCAGTGAAATTTGAGAATGGAACTTG
GGTGGTCCTTACTGATTTGGAAGACCTTTCGCTCAGCGAGAAGATAATAAACAGGCTCACAGGT
GATCTGATTCAGGAGAAACTTGTTGCATCTGGAGACTTATTAACTTTTCAACCAATTGAAGAAG
ATCCCAAAGATAACACGCCTTCTCCTACAGGCCTGAATGAAGAAAAGGAACAAGCTGAGTCTGA
CAGTCCCCTTTCAGTCACTGAACCAAACCAAATGCAGGAAGCCTGGCTGGAGGAAGAGGGGAAC
AAAGACTCTGATGTAAAACATGGGGACCGTGAAAAGCTTCAACCAGAACAAACATGACGGAAAG
ACAGAAAGACTGGCGAGTGTCTGCACTTAGGGAAAAGCAATTAAATGAAACAGGCCCCAAACCT
GGTAGAGTCACATCCTACCACTTTTGCCAATTACTGTATGTCCTCAAAAACAAATGAACACAAA
CCACTGTTTTAAAGACTTTAACATAGTGTTGTCAATCATTGCATCTTTGCCTGGATGTCACCTA
TCTCCTACCTGACATTCTTTTAAAAAAAATTTTTTTTTGAGACAGGGTTTCACTGTGTAGCTTA
TGAATTCACTATTGGCTCAAGCTAGCCTCAGACTCACAGAGATCCACCTGCCTCTGCTCCGAAG
TACTGACTTCCACCTGCTACTCTTTTTTATTTTTATTTTATGTATCTATTCTCTCATATCTTAC
ATCCAACCCCAATTTCCCCTCCCTCCTCTCCGCCCATAGTCCCCCTCTCCTCTTTCCACCAATC
CATTCCTCCTTCTGTATCCCCGTTACTAGGAGTCTTAGGTCACCCTTATAGATTCCTGGGAGTT
TCCATCACATTAAGTTTCCACCTCATCCCCCTAAATCCTCCTCCCAATTCCAGGGAAAAGGGCA
GGCCTCCCAGGGATATCATCCAGACATGGCATATTAAGTTGC

hide sequence

RefSeq Acc Id:

XM_017596471 ⟹ XP_017451960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,661,805 (-)	NCBI
mRatBN7.2	9	65,120,370 - 65,168,008 (-)	NCBI
Rnor_6.0	9	70,403,614 - 70,450,204 (-)	NCBI

Sequence:

show sequence

GCCTGCGCCAGCTTTAGTAGGCGCCGCGGTTGCCTGGAAACCGTGACGCCCGGGTTTCAGTTTC
TAGGTCTTGCTAGAAATCATGGCCAAATTTGTGATCGCCGGTAAAGCAAACTGCCCATATTATG
CTAAGGCAGAACTTCTGGCAGACTATTTACAAAAGAATCTTCCTGACTTTCGGATTTTTAAGAT
CACGAAACATCCTGACGAGTGGGAGGAGTGGCTGGAAGATGTCTGTGAAAGGAATATGTGGGAC
CACAGAATCTCCCCCATTATCTGGAGAGAGTTGCTGGATCGTGGAGGCAAGGGCTTGCTTTTGG
GAGGATACAATGAGTTTCTGGAACATGCCCAGCTTTACTATGGCATCACTTCCAGCATGACGAC
AGAGCTGATGATGATCATCGCCCAAGAAAACATGGAGACACATACAGAACAAGAGTTAGATAAA
GAAAACTTGAAAGACCTCATCAGTCCCTTGCAGGTCTGGATTACCAGTGCAGGTTCTCGTGTGT
GCTGCCACTTAATTCCCCTCTTGCTAAGTGGGGAAGTGTTCGGGATGCAGGCAGAGATCAGCCT
GACCCTGTTTGACCAGGAGCAGAGGAGGGAATGCCTCAGTAACATAGTGATGGAAACTGAGAAT
CTGGCCTCCCCAGTCCTGCGCACTGTCTCCTTCTGCACGACGGTAAAGGATGCCTTCCTTCAGG
CTGAAGTCATCATCATCCTGGATGACAGCACGGACGAGGAAGTGTACAACATGGAGAGCTGCCT
TCGAAGCAGGGTACCACTGTGCCGCCTCTATGGTTACCTGATAGAGAAAAATGCTCACAAATCT
GTCAAAGTCATCGTGGGAGGGAAAAGCTTTCTGAATCTGAAAACAACTTTGCTCATACAATATG
CACCTAGCCTCGCAAGCAACATCATCGCAGTGGCTCTGGGGTTAGAAGGCCAAGCAAAAGCAGT
ACTGGCCCGAAAGATGAAAACAATTCCATCCAGAATCAAAGATGTGATAATTTGGGGTAATATC
ACTGGAAATAACTACGTTGATCTGAGGAAAGCAAAAGTTTACAACTATGAGAGTGCTATTAGGG
GACCTCCTGGATATTACCACTCTGTGTTAAGCTTGATTTTTGACAGAGAGTGGATAACAAAAGA
GTTTGTGAGGACGCTTAAAGACTTGAGCAGCACTGGAAAACAATTTGGAGGCATTTTGGCAGCA
CACAGCATAGCCACCACCCTGAAGTACTGGTACTATGGCTCACCACCTGGAGAGATCGTTTCCT
TGGGTGTAATGAGTGAAGGCCAGTTCGGCATTCCTGAAGGGATTGTCTTTTCTATGCCAGTGAA
ATTTGAGAATGGAACTTGGGTGGTCCTTACTGATTTGGAAGACCTTTCGCTCAGCGAGAAGATA
ATAAACAGGCTCACAGGTGATCTGATTCAGGAGAAACTTGTTGCATCTGGAGACTTATTAACTT
TTCAACCAATTGAAGAAGATCCCAAAGATAACACGCCTTCTCCTACAGGCCTGAATGAAGAAAA
GGAACAAGCTGAGTCTGACAGTCCCCTTTCAGTCACTGAACCAAACCAAATGCAGGAAGCCTGG
CTGGAGGAAGAGGGGAACAAAGACTCTGATGTAAAACATGGGGACCGTGAAAAGCTTCAACCAG
AACAAACATGACGGAAAGACAGAAAGACTGGCGAGTGTCTGCACTTAGGGAAAAGCAATTAAAT
GAAACAGGCCCCAAACCTGGTAGAGTCACATCCTACCACTTTTGCCAATTACTGTATGTCCTCA
AAAACAAATGAACACAAACCACTGTTTTAAAGACTTTAACATAGTGTTGTCAATCATTGCATCT
TTGCCTGGATGTCACCTATCTCCTACCTGACATTCTTTTAAAAAAAATTTTTTTTTGAGACAGG
GTTTCACTGTGTAGCTTATGAATTCACTATTGGCTCAAGCTAGCCTCAGACTCACAGAGATCCA
CCTGCCTCTGCTCCGAAGTACTGACTTCCACCTGCTACTCTTTTTTATTTTTATTTTATGTATC
TATTCTCTCATATCTTACATCCAACCCCAATTTCCCCTCCCTCCTCTCCGCCCATAGTCCCCCT
CTCCTCTTTCCACCAATCCATTCCTCCTTCTGTATCCCCGTTACTAGGAGTCTTAGGTCACCCT
TATAGATTCCTGGGAGTTTCCATCACATTAAGTTTCCACCTCATCCCCCTAAATCCTCCTCCCA
ATTCCAGGGAAAAGGGCAGGCCTCCCAGGGATATCATCCAGACATGGCATATTAAGTTGC

hide sequence

RefSeq Acc Id:

XM_017596472 ⟹ XP_017451961

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,661,736 (-)	NCBI
mRatBN7.2	9	65,120,370 - 65,167,914 (-)	NCBI
Rnor_6.0	9	70,403,614 - 70,450,175 (-)	NCBI

Sequence:

show sequence

TTGCCTGGAAACCGTGACGCCCGGGTTTCAGTTTCTAGGTCTTGCTAGAAATCATGGCCAAATT
TGTGATCGCCGGAGTGGCTGGAAGATGTCTGTGAAAGGAATATGTGGGACCACAGAATCTCCCC
CATTATCTGGAGAGAGTTGCTGGATCGTGGAGGCAAGGGCTTGCTTTTGGGAGGATACAATGAG
TTTCTGGAACATGCCCAGCTTTACTATGGCATCACTTCCAGCATGACGACAGAGCTGATGATGA
TCATCGCCCAAGAAAACATGGAGACACATACAGAACAAGAGTTAGATAAAGAAAACTTGAAAGA
CCTCATCAGTCCCTTGCAGGTCTGGATTACCAGTGCAGGTTCTCGTGTGTGCTGCCACTTAATT
CCCCTCTTGCTAAGTGGGGAAGTGTTCGGGATGCAGGCAGAGATCAGCCTGACCCTGTTTGACC
AGGAGCAGAGGAGGGAATGCCTCAGTAACATAGTGATGGAAACTGAGAATCTGGCCTCCCCAGT
CCTGCGCACTGTCTCCTTCTGCACGACGGTAAAGGATGCCTTCCTTCAGGCTGAAGTCATCATC
ATCCTGGATGACAGCACGGACGAGGAAGTGTACAACATGGAGAGCTGCCTTCGAAGCAGGGTAC
CACTGTGCCGCCTCTATGGTTACCTGATAGAGAAAAATGCTCACAAATCTGTCAAAGTCATCGT
GGGAGGGAAAAGCTTTCTGAATCTGAAAACAACTTTGCTCATACAATATGCACCTAGCCTCGCA
AGCAACATCATCGCAGTGGCTCTGGGGTTAGAAGGCCAAGCAAAAGCAGTACTGGCCCGAAAGA
TGAAAACAATTCCATCCAGAATCAAAGATGTGATAATTTGGGGTAATATCACTGGAAATAACTA
CGTTGATCTGAGGAAAGCAAAAGTTTACAACTATGAGAGTGCTATTAGGGGACCTCCTGGATAT
TACCACTCTGTGTTAAGCTTGATTTTTGACAGAGAGTGGATAACAAAAGAGTTTGTGAGGACGC
TTAAAGACTTGAGCAGCACTGGAAAACAATTTGGAGGCATTTTGGCAGCACACAGCATAGCCAC
CACCCTGAAGTACTGGTACTATGGCTCACCACCTGGAGAGATCGTTTCCTTGGGTGTAATGAGT
GAAGGCCAGTTCGGCATTCCTGAAGGGATTGTCTTTTCTATGCCAGTGAAATTTGAGAATGGAA
CTTGGGTGGTCCTTACTGATTTGGAAGACCTTTCGCTCAGCGAGAAGATAATAAACAGGCTCAC
AGGTGATCTGATTCAGGAGAAACTTGTTGCATCTGGAGACTTATTAACTTTTCAACCAATTGAA
GAAGATCCCAAAGATAACACGCCTTCTCCTACAGGCCTGAATGAAGAAAAGGAACAAGCTGAGT
CTGACAGTCCCCTTTCAGTCACTGAACCAAACCAAATGCAGGAAGCCTGGCTGGAGGAAGAGGG
GAACAAAGACTCTGATGTAAAACATGGGGACCGTGAAAAGCTTCAACCAGAACAAACATGACGG
AAAGACAGAAAGACTGGCGAGTGTCTGCACTTAGGGAAAAGCAATTAAATGAAACAGGCCCCAA
ACCTGGTAGAGTCACATCCTACCACTTTTGCCAATTACTGTATGTCCTCAAAAACAAATGAACA
CAAACCACTGTTTTAAAGACTTTAACATAGTGTTGTCAATCATTGCATCTTTGCCTGGATGTCA
CCTATCTCCTACCTGACATTCTTTTAAAAAAAATTTTTTTTTGAGACAGGGTTTCACTGTGTAG
CTTATGAATTCACTATTGGCTCAAGCTAGCCTCAGACTCACAGAGATCCACCTGCCTCTGCTCC
GAAGTACTGACTTCCACCTGCTACTCTTTTTTATTTTTATTTTATGTATCTATTCTCTCATATC
TTACATCCAACCCCAATTTCCCCTCCCTCCTCTCCGCCCATAGTCCCCCTCTCCTCTTTCCACC
AATCCATTCCTCCTTCTGTATCCCCGTTACTAGGAGTCTTAGGTCACCCTTATAGATTCCTGGG
AGTTTCCATCACATTAAGTTTCCACCTCATCCCCCTAAATCCTCCTCCCAATTCCAGGGAAAAG
GGCAGGCCTCCCAGGGATATCATCCAGACATGGCATATTAAGTTGC

hide sequence

RefSeq Acc Id:

XM_039083649 ⟹ XP_038939577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,659,852 (-)	NCBI
mRatBN7.2	9	65,120,370 - 65,165,206 (-)	NCBI

RefSeq Acc Id:

XM_039083650 ⟹ XP_038939578

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,661,742 (-)	NCBI
mRatBN7.2	9	65,120,370 - 65,167,936 (-)	NCBI

RefSeq Acc Id:

XM_039083652 ⟹ XP_038939580

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,658,693 (-)	NCBI
mRatBN7.2	9	65,120,370 - 65,164,880 (-)	NCBI

RefSeq Acc Id:

XM_039083653 ⟹ XP_038939581

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,661,805 (-)	NCBI
mRatBN7.2	9	65,120,370 - 65,167,997 (-)	NCBI

RefSeq Acc Id:

XM_039083654 ⟹ XP_038939582

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,661,420 (-)	NCBI
mRatBN7.2	9	65,120,370 - 65,167,610 (-)	NCBI

RefSeq Acc Id:

XM_039083655 ⟹ XP_038939583

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,658,661 (-)	NCBI
mRatBN7.2	9	65,120,370 - 65,164,840 (-)	NCBI

RefSeq Acc Id:

XM_039083657 ⟹ XP_038939585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,658,704 (-)	NCBI
mRatBN7.2	9	65,120,370 - 65,164,903 (-)	NCBI

RefSeq Acc Id:

XM_039083658 ⟹ XP_038939586

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,647,717 - 72,658,704 (-)	NCBI
mRatBN7.2	9	65,153,926 - 65,164,903 (-)	NCBI

RefSeq Acc Id:

XM_063267213 ⟹ XP_063123283

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,661,466 (-)	NCBI

RefSeq Acc Id:

XM_063267214 ⟹ XP_063123284

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,659,852 (-)	NCBI

RefSeq Acc Id:

XM_063267215 ⟹ XP_063123285

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,659,852 (-)	NCBI

RefSeq Acc Id:

XM_063267216 ⟹ XP_063123286

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,661,783 (-)	NCBI

RefSeq Acc Id:

XM_063267217 ⟹ XP_063123287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,614,185 - 72,661,820 (-)	NCBI

RefSeq Acc Id:

XR_005488912

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	72,643,603 - 72,658,704 (-)	NCBI
mRatBN7.2	9	65,149,787 - 65,164,903 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101691	(Get FASTA)	NCBI Sequence Viewer
	NP_001419662	(Get FASTA)	NCBI Sequence Viewer
	XP_017451959	(Get FASTA)	NCBI Sequence Viewer
	XP_017451960	(Get FASTA)	NCBI Sequence Viewer
	XP_017451961	(Get FASTA)	NCBI Sequence Viewer
	XP_038939577	(Get FASTA)	NCBI Sequence Viewer
	XP_038939578	(Get FASTA)	NCBI Sequence Viewer
	XP_038939580	(Get FASTA)	NCBI Sequence Viewer
	XP_038939581	(Get FASTA)	NCBI Sequence Viewer
	XP_038939582	(Get FASTA)	NCBI Sequence Viewer
	XP_038939583	(Get FASTA)	NCBI Sequence Viewer
	XP_038939585	(Get FASTA)	NCBI Sequence Viewer
	XP_038939586	(Get FASTA)	NCBI Sequence Viewer
	XP_063123283	(Get FASTA)	NCBI Sequence Viewer
	XP_063123284	(Get FASTA)	NCBI Sequence Viewer
	XP_063123285	(Get FASTA)	NCBI Sequence Viewer
	XP_063123286	(Get FASTA)	NCBI Sequence Viewer
	XP_063123287	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98891	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017207
	ENSRNOP00000017207.4
	ENSRNOP00000069626
	ENSRNOP00000069626.2
	ENSRNOP00000077547
	ENSRNOP00000077547.2
	ENSRNOP00000106292.1

RefSeq Acc Id:

NP_001101691 ⟸ NM_001108221

- UniProtKB:

A0A0G2JVU8 (UniProtKB/TrEMBL), A0A8I5XW88 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAKFVIAGKANCPYYAKAELLADYLQKNLPDFRIFKITKHPDEWEEWLEDVCERNMWDHRISPI
IWRELLDRGGKGLLLGGYNEFLEHAQLYYGITSSMTTELMMIIAQENMETHTEQELDKENLKDL
ISPLQVWITSAGSRVCCHLIPLLLSGEVFGMQAEISLTLFDQEQRRECLSNIVMETENLASPVL
RTVSFCTTVKDAFLQAEVIIILDDSTDEEVYNMESCLRSRVPLCRLYGYLIEKNAHKSVKVIVG
GKSFLNLKTTLLIQYAPSLASNIIAVALGLEGQAKAVLARKMKTIPSRIKDVIIWGNITGNNYV
DLRKAKVYNYESAIRGPPGYYHSVLSLIFDREWITKEFVRTLKDLSSTGKQFGGILAAHSIATT
LKYWYYGSPPGEIVSLGVMSEGQFGIPEGIVFSMPVKFENGTWVVLTDLEDLSLSEKIINRLTG
DLIQEKLVASGDLLTFQPIEEDSDVKHGDREKLQPEQT

hide sequence

RefSeq Acc Id:

XP_017451960 ⟸ XM_017596471

- Peptide Label:

isoform X5

- Sequence:

show sequence

MAKFVIAGKANCPYYAKAELLADYLQKNLPDFRIFKITKHPDEWEEWLEDVCERNMWDHRISPI
IWRELLDRGGKGLLLGGYNEFLEHAQLYYGITSSMTTELMMIIAQENMETHTEQELDKENLKDL
ISPLQVWITSAGSRVCCHLIPLLLSGEVFGMQAEISLTLFDQEQRRECLSNIVMETENLASPVL
RTVSFCTTVKDAFLQAEVIIILDDSTDEEVYNMESCLRSRVPLCRLYGYLIEKNAHKSVKVIVG
GKSFLNLKTTLLIQYAPSLASNIIAVALGLEGQAKAVLARKMKTIPSRIKDVIIWGNITGNNYV
DLRKAKVYNYESAIRGPPGYYHSVLSLIFDREWITKEFVRTLKDLSSTGKQFGGILAAHSIATT
LKYWYYGSPPGEIVSLGVMSEGQFGIPEGIVFSMPVKFENGTWVVLTDLEDLSLSEKIINRLTG
DLIQEKLVASGDLLTFQPIEEDPKDNTPSPTGLNEEKEQAESDSPLSVTEPNQMQEAWLEEEGN
KDSDVKHGDREKLQPEQT

hide sequence

RefSeq Acc Id:	XP_017451961 ⟸ XM_017596472
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWDHRISPIIWRELLDRGGKGLLLGGYNEFLEHAQLYYGITSSMTTELMMIIAQENMETHTEQE LDKENLKDLISPLQVWITSAGSRVCCHLIPLLLSGEVFGMQAEISLTLFDQEQRRECLSNIVME TENLASPVLRTVSFCTTVKDAFLQAEVIIILDDSTDEEVYNMESCLRSRVPLCRLYGYLIEKNA HKSVKVIVGGKSFLNLKTTLLIQYAPSLASNIIAVALGLEGQAKAVLARKMKTIPSRIKDVIIW GNITGNNYVDLRKAKVYNYESAIRGPPGYYHSVLSLIFDREWITKEFVRTLKDLSSTGKQFGGI LAAHSIATTLKYWYYGSPPGEIVSLGVMSEGQFGIPEGIVFSMPVKFENGTWVVLTDLEDLSLS EKIINRLTGDLIQEKLVASGDLLTFQPIEEDPKDNTPSPTGLNEEKEQAESDSPLSVTEPNQMQ EAWLEEEGNKDSDVKHGDREKLQPEQT hide sequence

RefSeq Acc Id:	XP_017451959 ⟸ XM_017596470
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVVTGNSKPSGKANCPYYAKAELLADYLQKNLPDFRIFKITKHPDEWEEWLEDVCERNMWDHRI SPIIWRELLDRGGKGLLLGGYNEFLEHAQLYYGITSSMTTELMMIIAQENMETHTEQELDKENL KDLISPLQVWITSAGSRVCCHLIPLLLSGEVFGMQAEISLTLFDQEQRRECLSNIVMETENLAS PVLRTVSFCTTVKDAFLQAEVIIILDDSTDEEVYNMESCLRSRVPLCRLYGYLIEKNAHKSVKV IVGGKSFLNLKTTLLIQYAPSLASNIIAVALGLEGQAKAVLARKMKTIPSRIKDVIIWGNITGN NYVDLRKAKVYNYESAIRGPPGYYHSVLSLIFDREWITKEFVRTLKDLSSTGKQFGGILAAHSI ATTLKYWYYGSPPGEIVSLGVMSEGQFGIPEGIVFSMPVKFENGTWVVLTDLEDLSLSEKIINR LTGDLIQEKLVASGDLLTFQPIEEDPKDNTPSPTGLNEEKEQAESDSPLSVTEPNQMQEAWLEE EGNKDSDVKHGDREKLQPEQT hide sequence

Ensembl Acc Id:

ENSRNOP00000017207 ⟸ ENSRNOT00000017207

Ensembl Acc Id:

ENSRNOP00000069626 ⟸ ENSRNOT00000086391

RefSeq Acc Id:	XP_038939581 ⟸ XM_039083653
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939578 ⟸ XM_039083650
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939582 ⟸ XM_039083654
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939577 ⟸ XM_039083649
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939585 ⟸ XM_039083657
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038939580 ⟸ XM_039083652
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939583 ⟸ XM_039083655
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939586 ⟸ XM_039083658
- Peptide Label:	isoform X10

Ensembl Acc Id:

ENSRNOP00000077547 ⟸ ENSRNOT00000097252

RefSeq Acc Id:	XP_063123287 ⟸ XM_063267217
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063123286 ⟸ XM_063267216
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123283 ⟸ XM_063267213
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123284 ⟸ XM_063267214
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123285 ⟸ XM_063267215
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5XW88 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000106292 ⟸ ENSRNOT00000171413

Protein Domains

Lactate/malate dehydrogenase C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JVU8-F1-model_v2	AlphaFold	A0A0G2JVU8	1-533	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696714

Promoter ID:

EPDNEW_R7238

Type:

single initiation site

Name:

Mdh1b_1

Description:

malate dehydrogenase 1B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	70,450,146 - 70,450,206	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307874	AgrOrtholog
BioCyc Gene	G2FUF-27339	BioCyc
BioCyc Pathway	MALATE-ASPARTATE-SHUTTLE-PWY [malate/L-aspartate shuttle pathway]	BioCyc
	PWY-5690 [TCA cycle II (plants and fungi)]	BioCyc
	PWY66-399 [gluconeogenesis III]	BioCyc
BioCyc Pathway Image	MALATE-ASPARTATE-SHUTTLE-PWY	BioCyc
	PWY-5690	BioCyc
	PWY66-399	BioCyc
Ensembl Genes	ENSRNOG00000012891	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017207	ENTREZGENE
	ENSRNOT00000017207.7	UniProtKB/TrEMBL
	ENSRNOT00000086391	ENTREZGENE
	ENSRNOT00000086391.3	UniProtKB/TrEMBL
	ENSRNOT00000097252	ENTREZGENE
	ENSRNOT00000097252.2	UniProtKB/TrEMBL
	ENSRNOT00000171413.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.110.10	UniProtKB/TrEMBL
	NAD(P)-binding Rossmann-like Domain	UniProtKB/TrEMBL
InterPro	Lactate/malate_DH_C	UniProtKB/TrEMBL
	Lactate_DH/Glyco_Ohase_4_C	UniProtKB/TrEMBL
	Malate_DH_SF1	UniProtKB/TrEMBL
	NAD(P)-bd_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:316444	UniProtKB/TrEMBL
NCBI Gene	316444	ENTREZGENE
PANTHER	MDH_SF1	UniProtKB/TrEMBL
Pfam	Ldh_1_C	UniProtKB/TrEMBL
PhenoGen	Mdh1b	PhenoGen
RatGTEx	ENSRNOG00000012891	RatGTEx
Superfamily-SCOP	Lactate_DH/Glyco_hydro_4_C	UniProtKB/TrEMBL
	SSF51735	UniProtKB/TrEMBL
UniProt	A0A0G2JVU8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5XW88	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LVK5_RAT	UniProtKB/TrEMBL
	A6IPG9_RAT	UniProtKB/TrEMBL
	D3Z861_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-19	Mdh1b	malate dehydrogenase 1B	Mdh1b	malate dehydrogenase 1B, NAD (soluble)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Mdh1b	malate dehydrogenase 1B, NAD (soluble)	Mdh1b_predicted	malate dehydrogenase 1B, NAD (soluble) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mdh1b_predicted	malate dehydrogenase 1B, NAD (soluble) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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