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Gene: Pkp4 (plakophilin 4) Rattus norvegicus

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Symbol:

Pkp4

Name:

plakophilin 4

RGD ID:

1307840

Description:

Predicted to enable cadherin binding activity. Predicted to be involved in several processes, including cell-cell junction assembly; positive regulation of cytokinesis; and regulation of Rho protein signal transduction. Predicted to be located in several cellular components, including cell-cell contact zone; postsynaptic density; and spindle. Predicted to be active in several cellular components, including adherens junction; nucleus; and plasma membrane. Orthologous to human PKP4 (plakophilin 4); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC295625; plakophilin-4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PKP4 (plakophilin 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pkp4 (plakophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pkp4 (plakophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PKP4 (plakophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PKP4 (plakophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pkp4 (plakophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PKP4 (plakophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PKP4 (plakophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pkp4 (plakophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pkp4 (plakophilin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CTNND2 (catenin delta 2)	HGNC	OrthoDB
Homo sapiens (human):	PRSS16 (serine protease 16)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PKP4 (plakophilin 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pkp4 (plakophilin 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pkp4 (plakophilin 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	jac-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	jac-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	p120ctn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	p120ctn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pkp4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pkp4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	64,040,995 - 64,244,586 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	64,141,771 - 64,244,586 (+)	Ensembl				GRCr8
mRatBN7.2	3	43,632,364 - 43,835,834 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	43,631,880 - 43,835,474 (+)	Ensembl				mRatBN7.2
Rnor_6.0	3	45,211,097 - 45,414,524 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	45,277,348 - 45,414,613 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	50,328,374 - 50,531,152 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	40,859,032 - 41,062,477 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	41,682,689 - 41,884,590 (+)	NCBI		Celera
RGSC_v3.1	3	40,785,055 - 40,958,851 (+)	NCBI
Cytogenetic Map	3	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (EXP,ISO)

DDT (EXP)

dibutyl phthalate (EXP)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

glafenine (EXP)

indometacin (ISO)

levonorgestrel (ISO)

methidathion (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

oxaliplatin (EXP)

ozone (ISO)

p-toluidine (EXP)

paracetamol (EXP,ISO)

phenobarbital (ISO)

phenylarsine oxide (ISO)

phenylephrine (EXP)

quercetin (ISO)

rotenone (EXP)

SB 431542 (ISO)

sirolimus (EXP)

sodium arsenate (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

tacrolimus hydrate (EXP)

tamibarotene (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

testosterone undecanoate (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triptonide (ISO)

troglitazone (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cell adhesion (IEA)

cell-cell adhesion (IEA)

cell-cell junction assembly (IEA,ISO)

positive regulation of cytokinesis (IEA,ISO)

regulation of Rho protein signal transduction (IEA,ISO)

Cellular Component

anchoring junction (IEA)

cell junction (IEA,ISO)

cell-cell contact zone (IEA,ISO)

cell-cell junction (IEA,ISO)

cytoplasm (IEA,ISO)

cytoplasmic side of plasma membrane (IEA,ISO)

cytoskeleton (IEA,ISO)

desmosome (IEA,ISO)

midbody (IEA,ISO)

mitotic spindle (IEA,ISO)

perinuclear region of cytoplasm (IEA,ISO)

plasma membrane (IEA,ISO)

postsynaptic density (IEA,ISO)

spindle midzone (IEA,ISO)

spindle pole (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:8937994	PMID:17114649	PMID:17115030	PMID:22965878

Genomics

Comparative Map Data

Pkp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	64,040,995 - 64,244,586 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	64,141,771 - 64,244,586 (+)	Ensembl				GRCr8
mRatBN7.2	3	43,632,364 - 43,835,834 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	43,631,880 - 43,835,474 (+)	Ensembl				mRatBN7.2
Rnor_6.0	3	45,211,097 - 45,414,524 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	45,277,348 - 45,414,613 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	50,328,374 - 50,531,152 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	40,859,032 - 41,062,477 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	41,682,689 - 41,884,590 (+)	NCBI		Celera
RGSC_v3.1	3	40,785,055 - 40,958,851 (+)	NCBI
Cytogenetic Map	3	q21	NCBI

PKP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	158,456,952 - 158,681,429 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	158,456,900 - 158,682,879 (+)	Ensembl			hg38	GRCh38
GRCh37	2	159,313,464 - 159,537,941 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	159,021,722 - 159,246,187 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	159,138,983 - 159,363,445	NCBI
Celera	2	152,930,251 - 153,154,736 (+)	NCBI		Celera
Cytogenetic Map	2	q24.1	NCBI
HuRef	2	151,277,855 - 151,426,157 (+)	NCBI		HuRef
CHM1_1	2	159,319,662 - 159,544,088 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	158,913,757 - 159,138,252 (+)	NCBI		T2T-CHM13v2.0

Pkp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	58,991,123 - 59,185,549 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	58,991,194 - 59,185,552 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	59,160,850 - 59,355,205 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	59,160,850 - 59,355,208 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	58,998,907 - 59,193,262 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	58,961,859 - 59,156,042 (+)	NCBI		MGSCv36	mm8
Celera	2	60,907,299 - 61,046,531 (+)	NCBI		Celera
Cytogenetic Map	2	C1.1	NCBI
cM Map	2	33.52	NCBI

Pkp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	14,833,945 - 15,051,007 (-)	Ensembl
ChiLan1.0	NW_004955449	14,835,423 - 15,050,237 (-)	NCBI	ChiLan1.0	ChiLan1.0

PKP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	61,132,065 - 61,359,242 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	61,147,039 - 61,374,216 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	45,726,315 - 45,953,602 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	162,965,884 - 163,192,565 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	162,986,256 - 163,192,565 (+)	Ensembl			panPan2	panpan1.1

PKP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	4,342,715 - 4,575,672 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	4,342,688 - 4,575,016 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	4,483,224 - 4,715,761 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	4,465,991 - 4,698,991 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	4,465,724 - 4,698,989 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	4,466,783 - 4,706,254 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	4,526,814 - 4,759,926 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	4,569,772 - 4,802,204 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pkp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	121,497,043 - 121,739,971 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	19,875,542 - 20,120,677 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	19,877,749 - 20,120,677 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PKP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	65,431,111 - 65,680,887 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	65,431,173 - 65,680,891 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	72,627,850 - 72,886,964 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PKP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	43,859,446 - 44,089,751 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	43,930,975 - 44,091,291 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	155,487,919 - 155,718,334 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pkp4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624732	6,970,728 - 7,208,842 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pkp4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	36,844,479 - 37,047,033 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pkp4
1350 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	96
Count of miRNA genes:	44
Interacting mature miRNAs:	48
Transcripts:	ENSRNOT00000007531, ENSRNOT00000059246
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	47904172	92904172	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	48657744	93657744	Rat
10450816	Scl75	Serum cholesterol level QTL 75	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	58601291	71157804	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	37796919	82796919	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	3	47904172	70710963	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	38708931	67641995	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	38708931	67641995	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	38708931	67641995	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	38708931	67641995	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	38708931	67641995	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	47904172	70710963	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	38708931	67641995	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	67641995	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	48657744	93657744	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
10450852	Stl33	Serum triglyceride level QTL 33	3.4	0.05	blood LDL triglyceride amount (VT:0010699)	blood lipoprotein triglyceride level (CMO:0002685)	3	58601291	71157804	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
4889975	Bmd81	Bone mineral density QTL 81	4.3		tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	59119402	70710963	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
634317	Bw117	Body weight QTL 117	3.58		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	59863663	73704481	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	59863663	87321459	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	53651826	98651826	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	48876619	93876619	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	48876619	93876619	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	87321459	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	47904172	70710963	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
10450813	Scl74	Serum cholesterol level QTL 74	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	58601291	71157804	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	83358329	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	48657744	93657744	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	50766145	95766145	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	50766145	95766145	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	83708931	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	48657744	93657744	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	37363734	82363734	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	48657744	93657744	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat

Markers in Region

D3Rat186

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	64,058,960 - 64,059,113 (+)	Marker Load Pipeline
mRatBN7.2	3	43,650,198 - 43,650,351 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	45,228,240 - 45,228,392	NCBI	Rnor6.0
Rnor_5.0	3	50,344,849 - 50,345,001	UniSTS	Rnor5.0
RGSC_v3.4	3	40,876,097 - 40,876,433	RGD	RGSC3.4
RGSC_v3.4	3	40,876,100 - 40,876,252	UniSTS	RGSC3.4
Celera	3	41,700,202 - 41,700,354	UniSTS
RGSC_v3.1	3	40,772,472 - 40,772,624	RGD
RH 3.4 Map	3	561.6	UniSTS
RH 3.4 Map	3	561.6	RGD
RH 2.0 Map	3	340.9	RGD
SHRSP x BN Map	3	31.7599	RGD
Cytogenetic Map	3	q21	UniSTS

D3Rat227

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	43,827,364 - 43,827,511 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	45,406,058 - 45,406,204	NCBI	Rnor6.0
Rnor_5.0	3	50,522,686 - 50,522,832	UniSTS	Rnor5.0
RGSC_v3.4	3	41,054,013 - 41,054,159	UniSTS	RGSC3.4
RGSC_v3.4	3	41,054,012 - 41,054,159	RGD	RGSC3.4
Celera	3	41,876,124 - 41,876,270	UniSTS
RGSC_v3.1	3	40,950,385 - 40,950,531	RGD
RH 3.4 Map	3	562.6	RGD
RH 3.4 Map	3	562.6	UniSTS
RH 2.0 Map	3	341.5	RGD
SHRSP x BN Map	3	30.1998	RGD
Cytogenetic Map	3	q21	UniSTS

D18Mco1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	3,287,248 - 3,287,445 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	43,706,366 - 43,706,533 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	3,524,613 - 3,524,807	NCBI	Rnor6.0
Rnor_6.0	3	45,284,413 - 45,284,579	NCBI	Rnor6.0
Rnor_5.0	18	3,534,088 - 3,534,282	UniSTS	Rnor5.0
Rnor_5.0	3	50,401,022 - 50,401,188	UniSTS	Rnor5.0
RGSC_v3.4	18	3,632,387 - 3,632,581	UniSTS	RGSC3.4
RGSC_v3.4	3	40,932,267 - 40,932,433	UniSTS	RGSC3.4
Celera	3	41,756,534 - 41,756,700	UniSTS
Celera	18	3,147,855 - 3,148,061	UniSTS
RGSC_v3.1	3	61,403,992 - 61,404,152	RGD
Cytogenetic Map	18	p13	UniSTS
Cytogenetic Map	3	q21	UniSTS

RH133858

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	43,818,495 - 43,819,732 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	45,397,189 - 45,398,425	NCBI	Rnor6.0
Rnor_5.0	3	50,513,817 - 50,515,053	UniSTS	Rnor5.0
RGSC_v3.4	3	41,045,144 - 41,046,380	UniSTS	RGSC3.4
Celera	3	41,867,255 - 41,868,491	UniSTS
RH 3.4 Map	3	560.2	UniSTS
Cytogenetic Map	3	q21	UniSTS

RH137757

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	43,749,849 - 43,750,016 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	45,327,871 - 45,328,037	NCBI	Rnor6.0
Rnor_5.0	3	50,444,528 - 50,444,694	UniSTS	Rnor5.0
RGSC_v3.4	3	40,976,062 - 40,976,228	UniSTS	RGSC3.4
Celera	3	41,799,531 - 41,799,697	UniSTS
Cytogenetic Map	3	q21	UniSTS

RH129057

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	43,835,668 - 43,835,830 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	45,414,362 - 45,414,523	NCBI	Rnor6.0
Rnor_5.0	3	50,530,990 - 50,531,151	UniSTS	Rnor5.0
RGSC_v3.4	3	41,062,317 - 41,062,478	UniSTS	RGSC3.4
Celera	3	41,884,428 - 41,884,589	UniSTS
RH 3.4 Map	3	560.7	UniSTS
Cytogenetic Map	3	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003749475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003753725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003753726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059246 ⟹ ENSRNOP00000056013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	64,141,771 - 64,244,586 (+)	Ensembl
mRatBN7.2 Ensembl	3	43,632,409 - 43,835,445 (+)	Ensembl
Rnor_6.0 Ensembl	3	45,277,348 - 45,414,613 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093790 ⟹ ENSRNOP00000081746

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	43,631,880 - 43,835,081 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111282 ⟹ ENSRNOP00000080285

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	43,684,832 - 43,835,445 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117979 ⟹ ENSRNOP00000087918

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	43,631,880 - 43,835,474 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118961 ⟹ ENSRNOP00000086370

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	43,631,880 - 43,835,474 (+)	Ensembl

RefSeq Acc Id:

NM_001427440 ⟹ NP_001414369

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,040,995 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_006234216 ⟹ XP_006234278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,636 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,633,242 - 43,835,834 (+)	NCBI
Rnor_6.0	3	45,211,098 - 45,414,524 (+)	NCBI
Rnor_5.0	3	50,328,374 - 50,531,152 (+)	NCBI

Sequence:

show sequence

CCCCGCCGCGTGCTCCGCCATCCCGCCCGCCTCTCCCCTCCCCCCCGGCGGCGCACAACTTTGC
TCCGCACAGCTCAGCTCGGCCGCTTTTCCTCCCGCACCGCGCCACCGCTTCTCGAACTTGAGCC
CCGCGGCTCCCGCGCGCCGTCGTGCCCGGGGCCCGCCGTCTGTGGGTCCATCCCTCGCTCCACC
GAAGCAACCGCCTACCGTGCCTCCCACGCTCGCTCGGCGTGTCGCCTCGGCCCCCAGAGCCTCA
CTGGTGTGCGTGGCGACCGCCCGGAGGGTTCAGGGCTCCCAGCTCGCGGCTGCAAACCTCACGC
TCCTCCCTTGCGGGCGCCCCAGCCTTAAGGCTCCGGGCTGCCTTCCCGCGCCTCCCAACCTCCT
CGCGCTGCCAGGAGTTGGAGCGAGCAGCTTCACCCATCGGAGGATCGTGGGTCCCTGTCCTCCC
TTACTCCTTGGGAAACGAGAGGACGAGCAGCAGGGCCGGGATTTGGCGGCGTGGTGACTGAGTG
CGACACCCGGCGAGCGCGGGCAGCGGAGGCGCCACGGTTGCTCGGGGCGCCGCGATAGGCAGGT
GTGTGTGTCCAACGGGCGACGCGCGCTGCCAGCTAGTAGACTGGCGACAGATTGTGCTGGAATG
CAAGGAATGCACCAGGGACAGAGTCCGCACGGGCCCCGGCCGCACTAGCGCCTTCCCGGCCCTG
TTCTCGCTGTGTAGCCAGAGGTCACGGCGCATCTTCAGAGCTGGAGGAATGCCCGCCCCTGAAC
AGGCCTCACTGGTGGAGGAGGGGCAACCACAGACCCACCAGGAAGCTGTCTCCACTGGCCCAGG
CATGGAACCCGAGACCACAGCCACCACTATTCTAGCTTCCGTGAAGGAGCAGGAGCTTCAGTTT
CAACGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTA
GGCTTGGAGCAGAATCGCCCAGCATCGCCAGCACCAGGTACAGGGCCAGCGGCTCTATCTTCAT
GCACCCGAATTATGTGTCAGACTCAACTGAAAAGTCATTTCCTTGGAGATCAACAGATGTGCCA
AATACTGGTGTAAGCAAACCTAGAGTTTCTGACACTGTTCATCCCAACAACTATCTCATCAGGA
CGGAGCCAGAGCAAGGGGCCCTCTACTCACCAGAGCAGACGTCTCTCCATGAAAGTGAGGGATC
GTTGGGAAACTCAAGAAGTTCAACACAGATGAATTCTTACTCTGACAGTGGATACCAGGAAGCA
GGGAGTTTCCACAACAGCCAGACCGTGAACAAGGCAGACAGTAGACAGCATCCATTCACGGGAT
CAACAAGCAACCATGTGGTGAGGAATTCGAGAGCAGAAGGACAAACACTGGTTCAGCCATCAGT
AGCCAATCGGGCCATGCGAAGAGTTAGTTCAGTTCCATCTAGAGCACAGTCTCCTTCTTATGTT
ACCAGCACAGGCGTGTCTCCTTCAAGGGGGTCACTGAGAACTTCTCTGGGTAGTGGATTTGGCT
CTCCATCAGTGACGGACTCCCGACCTCTCAACCCCAGTACTTACTCCTCCAGCACGCTCCCTGC
TCAGCGGGCCGCCTCTCCGTACTCACAGAGACCCGCCTCCCCGACAGCCGTGCGCCGGGTCGGG
TCCGTCACCTCCCGACAGACCTCCAATCCCAACGGACCAGTCCCTCAGTACCAGACCACCACCA
GGGTGGGGTCCCCACTGACCCTGACTGATGCCCAGACTCGAGTAGCTTCCCCATCCCAAGGCCA
AGTGGGGTCATCGTCCCCGAAACGCTCTGGGATGACCGCCGTACCACAGCATCTGGGACCTTCA
CTGCAAAGGACTGTTCATGACATGGACCAATTCGGACAGCAGCAGTATGATATTTACGAGAGGA
TGGTTCCACCACGGCCAGACAGCCTGACAGGCTTACGGAGTTCCTATGCCAGTCAGCATAGTCA
GCTTGGACAAGATCTTCGTTCAGCTGTGTCTCCTGACTTGCACATCACTCCTATATATGAAGGG
AGGACCTACTACAGTCCAGTGTACCGCAGCCCAAACCACGGGACCGTGGAACTCCAAGGATCAC
AGACAGCACTGTACCGCACAGGCTCAGTAGGCATTGGGAATCTACAAAGGACTTCCAGCCAGAG
AAGCACCCTTACATACCAAAGAAATAACTATGCTCTGAACACAGCAGCTACCTATGCGGAGCCC
TACAGGCCTGTACAGTACCGAGTCCAAGAGTGCAGCTATAACCGGCTGCCACACACAGGGCCGG
CTGACGATGGTGCCACGAGATCCCCATCAATAGACAGCATTCAGAAGGACCCCAGTACTTTTAA
AGGTGTTATTCATTGTCTTCAGACATCTGTTGTGTTTTGGGAGTTTGCCTGGCGTGACCCTGAG
CTGCCAGAAGTCATTCACATGCTGCAACACCAGTTCCCGTCCGTGCAGGCGAATGCCGCGGCCT
ACCTGCAGCACCTGTGCTTTGGCGACAACAAAGTGAAGATGGAGGTGTACAGGCTAGGGGGAAT
CAAGCATCTGGTTGACCTATTGGACCACAGGGTGTTGGAAGTTCAGAAGAATGCTTGTGGTGCC
CTGCGAAACCTTGTGTTTGGCAAGTCTACAGATGAAAATAAAATAGCAATGAAGAATGTCGGTG
GCATCCCTGCCTTGCTGCGACTGTTGAGAAAGTCCATTGATGCAGAAGTAAGGGAGCTTGTTAC
AGGGGTTCTTTGGAATTTATCCTCATGTGACGCTGTAAAGATGACAATCATTCGAGATGCTCTC
TCAACCTTAACCAACACTGTGATAGTTCCACATTCTGGGTGGAATGACTCTTCCTTTGATGATG
ATCATAAAATTAAATTTCAGACCTCGCTGGTTCTGCGGAACACGACAGGTTGCCTGAGGAACCT
CAGCTCTGCCGGGGAGGAAGCCCGCAAGCAAATGCGGTCCTGTGAGGGGCTGGTAGACTCATTG
TTGTATGTGATCCACACGTGTGTGAACACTTCTGACTACGACAGCAAGACAGTGGAGAACTGCG
TGTGTACCCTGAGGAACCTATCATACCGGCTGGAACTAGAAGTCCCTCAGGCCCGGCTGCTCGG
ACTGAATGAACTAGATGACTTACTAGGAAAAGAGTCTCCCAGCAAAGACTCGGAACCAAGCTGC
TGGGGGAAGAAGAAGAAGAAGAAAAAGAGAACGCCACAAGAAGATCAATGGGATGGAGTCGGGC
CTATCCCTGGACTGTCCAAGTCCCCCAAAGGAGTCGAGATGCTCTGGCACCCGTCAGTGGTAAA
ACCGTATCTGACTCTTTTAGCAGAAAGTTCCAACCCAGCCACCTTGGAAGGCTCTGCCGGATCT
CTCCAGAACCTCTCTGCTGGCAACTGGAAGTTTGCAGCATATATCCGGGCAGCTGTCCGGAAGG
AAAAAGGGCTTCCTATCCTTGTTGAGCTTCTAAGGATGGATAATGACAGAGTCGTCTCTTCTGT
GGCCACTGCCTTGAGGAACATGGCGCTGGACGTTCGCAACAAGGAGCTCATAGGTAAATACGCC
ATGCGAGACCTGGTCAACAGGCTTCCCGGTGGCAACGGCCCCAGCATCCTGTCCGATGAGACTG
TGGCAGCCATCTGCTGTGCTCTGCATGAGGTCACCAGCAAAAACATGGAGAACGCCAAAGCTCT
GGCTGACTCGGGAGGTATAGAGAAGCTGGTGAACATAACCAAAGGCAGAGGAGACAGATCCTCT
CTGAAAGTGGTGAAGGCGGCAGCCCAGGTCTTGAATACATTGTGGCAGTATCGGGACCTCCGGA
GCATTTACAAAAAGGATGGGTGGAATCAGAACCATTTTATTACACCTGTGTCCACGCTAGAGCG
AGACCGATTCAAATCACACCCTTCTCTGTCCACCACCAACCAACAGATGTCACCCGTCATTCAG
TCAGTTGGCAGCACCTCCTCCTCACCAGCACTGTTAGGAATCAGAGAGCCTCGCTCTGAATACG
ATAGGACCCAGCCACCTATGCAGTATTACAATAGCCAAGGGGACACCACACATAAAGGCCTGTA
CCCTGGCTCCAGCAAACCTTCACCAATATACATCAGTTCCTATTCCTCACCAGCAAGAGAACAA
AACAGACGGCTACAGCACCAACAGCTGTACTATCAAGATGACTCCACCAGGAAGACCTTGGATG
CTTACAGACTGTACCTGCAGTCTCCTCGCAGCTATGAAGACCCTTACGGTGATGACCGAGTTCA
CTTCCCAGCTTCTACTGATTACTCAACGCAGTATGGACTGAAATCAACCACAAATTACGTAGAC
TTTTACTCCACTAAACGACCTTCTTATAGAGCCGAACAGTACCCTGGGTCCCCGGACTCCTGGG
TGTAGCATCAAGACGGCTGCCTGCCGAGGGCCGATTTTCTTCTGACTCTGCTTGGACTGAGGGG
AGTCCGTCTTGCTGATGATGGTGACCGTGAAAGTGAAGTGGAAGGGATGAGTGAAGAGGTTTTG
TTTGTTTTTTTTTTTTCTTTTTTGAGGAATTTTCAGGGAAGTGAAGAAACCCTTGGGAGAGGAC
TTTCTACGCTCTGTGTAGGTGTTAGATCTAATTACTTGTAGATTCTAGTGGTGAAGGTGTGGGT
GACGTGCTGAGAGGCTTGAGAAGTGGGTGAGATGAGAGGGGTATGTGTAGGTCAAATCAAATGA
CAGATGATTTTTTTAATGTGAATAAAGTTATGTTCAGATAGTTTGTACAGAAAAAAATAATAAT
AAAATGGATGCCCTTCATGTTTTATTGCTATTACTAAATGTCAAGATTGTATGCTATTATGTCT
TGTAAAAATTCCTTCTGTTGGTGTAAATATGGAAATGCCACATTGGTTAAGTGCCATCAATTGT
AATGCAGTGTGTCATTTGAAAAGAGATTTGAAGAACTGACAGCTTAAAGCCCAAACGGGAAGCC
TGAGGAACTGTTAACAGTTGACAACACACTCTGACGCCCTGTTTTCAGTGAGTAGTGAACTCTG
GAAGCACAAAGTCCAGCGTGACAGCAGCGCCATGCTCATCCCCCCTTTCACAGGACACTTCACT
GCCATTTTCTATGCACATGGAAGAAGAATAAATGTGGGATTTCATCCTGGA

hide sequence

RefSeq Acc Id:

XM_017592152 ⟹ XP_017447641

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,699,306 - 43,835,081 (+)	NCBI
Rnor_6.0	3	45,211,098 - 45,414,524 (+)	NCBI

Sequence:

show sequence

CCCCGCCGCGTGCTCCGCCATCCCGCCCGCCTCTCCCCTCCCCCCCGGCGGCGCACAACTTTGC
TCCGCACAGCTCAGCTCGGCCGCTTTTCCTCCCGCACCGCGCCACCGCTTCTCGAACTTGAGCC
CCGCGGCTCCCGCGCGCCGTCGTGCCCGGGGCCCGCCGTCTGTGGGTCCATCCCTCGCTCCACC
GAAGCAACCGCCTACCGTGCCTCCCACGCTCGCTCGGCGTGTCGCCTCGGCCCCCAGAGCCTCA
CTGGTGTGCGTGGCGACCGCCCGGAGGGTTCAGGGCTCCCAGCTCGCGGCTGCAAACCTCACGC
TCCTCCCTTGCGGGCGCCCCAGCCTTAAGGCTCCGGGCTGCCTTCCCGCGCCTCCCAACCTCCT
CGCGCTGCCAGGAGTTGGAGCGAGCAGCTTCACCCATCGGAGGATCGTGGGTCCCTGTCCTCCC
TTACTCCTTGGGAAACGAGAGGACGAGCAGCAGGGCCGGGATTTGGCGGCGTGGTGACTGAGTG
CGACACCCGGCGAGCGCGGGCAGCGGAGGCGCCACGGTTGCTCGGGGCGCCGCGATAGGCAGGT
GTGTGTGTCCAACGGGCGACGCGCGCTGCCAGCTAGTAGACTGGCGACAGATTGTGCTGGAATG
CAAGGAATGCACCAGGGACAGAGTCCGCACGGGCCCCGGCCGCACTAGCGCCTTCCCGGCCCTG
TTCTCGCTGTGTAGCCAGAGGTCACGGCGCATCTTCAGAGCTGGAGGAATGCCCGCCCCTGAAC
AGGCCTCACTGGTGGAGGAGGGGCAACCACAGACCCACCAGGAAGCTGTCTCCACTGGCCCAGG
CATGGAACCCGAGACCACAGCCACCACTATTCTAGCTTCCGTGAAGGAGCAGGAGCTTCAGTTT
CAACGACTCACCCGAGAACTGGAAGTGGAAAGGCAGATTGTTGCCAGTCAGCTAGAAAGATGTA
GGCTTGGAGCAGAATCGCCCAGCATCGCCAGCACCAGCTCAACTGAAAAGTCATTTCCTTGGAG
ATCAACAGATGTGCCAAATACTGGTGTAAGCAAACCTAGAGTTTCTGACACTGTTCATCCCAAC
AACTATCTCATCAGGACGGAGCCAGAGCAAGGGGCCCTCTACTCACCAGAGCAGACGTCTCTCC
ATGAAAGTGAGGGATCGTTGGGAAACTCAAGAAGTTCAACACAGATGAATTCTTACTCTGACAG
TGGATACCAGGAAGCAGGGAGTTTCCACAACAGCCAGACCGTGAACAAGGCAGACAGTAGACAG
CATCCATTCACGGGATCAACAAGCAACCATGTGGTGAGGAATTCGAGAGCAGAAGGACAAACAC
TGGTTCAGCCATCAGTAGCCAATCGGGCCATGCGAAGAGTTAGTTCAGTTCCATCTAGAGCACA
GTCTCCTTCTTATGTTACCAGCACAGGCGTGTCTCCTTCAAGGGGGTCACTGAGAACTTCTCTG
GGTAGTGGATTTGGCTCTCCATCAGTGACGGACTCCCGACCTCTCAACCCCAGTACTTACTCCT
CCAGCACGCTCCCTGCTCAGCGGGCCGCCTCTCCGTACTCACAGAGACCCGCCTCCCCGACAGC
CGTGCGCCGGGTCGGGTCCGTCACCTCCCGACAGACCTCCAATCCCAACGGACCAGTCCCTCAG
TACCAGACCACCACCAGGGTGGGGTCCCCACTGACCCTGACTGATGCCCAGACTCGAGTAGCTT
CCCCATCCCAAGGCCAAGTGGGGTCATCGTCCCCGAAACGCTCTGGGATGACCGCCGTACCACA
GCATCTGGGACCTTCACTGCAAAGGACTGTTCATGACATGGACCAATTCGGACAGCAGCAGTAT
GATATTTACGAGAGGATGGTTCCACCACGGCCAGACAGCCTGACAGGCTTACGGAGTTCCTATG
CCAGTCAGCATAGTCAGCTTGGACAAGATCTTCGTTCAGCTGTGTCTCCTGACTTGCACATCAC
TCCTATATATGAAGGGAGGACCTACTACAGTCCAGTGTACCGCAGCCCAAACCACGGGACCGTG
GAACTCCAAGGATCACAGACAGCACTGTACCGCACAGGCTCAGGCATTGGGAATCTACAAAGGA
CTTCCAGCCAGAGAAGCACCCTTACATACCAAAGAAATAACTATGCTCTGAACACAGCAGCTAC
CTATGCGGAGCCCTACAGGCCTGTACAGTACCGAGTCCAAGAGTGCAGCTATAACCGGCTGCCA
CACACAGGGCCGGCTGACGATGGTGCCACGAGATCCCCATCAATAGACAGCATTCAGAAGGACC
CCAGGGAGTTTGCCTGGCGTGACCCTGAGCTGCCAGAAGTCATTCACATGCTGCAACACCAGTT
CCCGTCCGTGCAGGCGAATGCCGCGGCCTACCTGCAGCACCTGTGCTTTGGCGACAACAAAGTG
AAGATGGAGGTGTACAGGCTAGGGGGAATCAAGCATCTGGTTGACCTATTGGACCACAGGGTGT
TGGAAGTTCAGAAGAATGCTTGTGGTGCCCTGCGAAACCTTGTGTTTGGCAAGTCTACAGATGA
AAATAAAATAGCAATGAAGAATGTCGGTGGCATCCCTGCCTTGCTGCGACTGTTGAGAAAGTCC
ATTGATGCAGAAGTAAGGGAGCTTGTTACAGGGGTTCTTTGGAATTTATCCTCATGTGACGCTG
TAAAGATGACAATCATTCGAGATGCTCTCTCAACCTTAACCAACACTGTGATAGTTCCACATTC
TGGGTGGAATGACTCTTCCTTTGATGATGATCATAAAATTAAATTTCAGACCTCGCTGGTTCTG
CGGAACACGACAGGTTGCCTGAGGAACCTCAGCTCTGCCGGGGAGGAAGCCCGCAAGCAAATGC
GGTCCTGTGAGGGGCTGGTAGACTCATTGTTGTATGTGATCCACACGTGTGTGAACACTTCTGA
CTACGACAGCAAGACAGTGGAGAACTGCGTGTGTACCCTGAGGAACCTATCATACCGGCTGGAA
CTAGAAGTCCCTCAGGCCCGGCTGCTCGGACTGAATGAACTAGATGACTTACTAGGAAAAGAGT
CTCCCAGCAAAGACTCGGAACCAAGCTGCTGGGGGAAGAAGAAGAAGAAGAAAAAGAGAACGCC
ACAAGAAGATCAATGGGATGGAGTCGGGCCTATCCCTGGACTGTCCAAGTCCCCCAAAGGAGTC
GAGATGCTCTGGCACCCGTCAGTGGTAAAACCGTATCTGACTCTTTTAGCAGAAAGTTCCAACC
CAGCCACCTTGGAAGGCTCTGCCGGATCTCTCCAGAACCTCTCTGCTGGCAACTGGAAGTTTGC
AGCATATATCCGGGCAGCTGTCCGGAAGGAAAAAGGGCTTCCTATCCTTGTTGAGCTTCTAAGG
ATGGATAATGACAGAGTCGTCTCTTCTGTGGCCACTGCCTTGAGGAACATGGCGCTGGACGTTC
GCAACAAGGAGCTCATAGGTAAATACGCCATGCGAGACCTGGTCAACAGGCTTCCCGGTGGCAA
CGGCCCCAGCATCCTGTCCGATGAGACTGTGGCAGCCATCTGCTGTGCTCTGCATGAGGTCACC
AGCAAAAACATGGAGAACGCCAAAGCTCTGGCTGACTCGGGAGGTATAGAGAAGCTGGTGAACA
TAACCAAAGGCAGAGGAGACAGATCCTCTCTGAAAGTGGTGAAGGCGGCAGCCCAGGTCTTGAA
TACATTGTGGCAGTATCGGGACCTCCGGAGCATTTACAAAAAGGATGGGTGGAATCAGAACCAT
TTTATTACACCTGTGTCCACGCTAGAGCGAGACCGATTCAAATCACACCCTTCTCTGTCCACCA
CCAACCAACAGATGTCACCCGTCATTCAGTCAGTTGGCAGCACCTCCTCCTCACCAGCACTGTT
AGGAATCAGAGAGCCTCGCTCTGAATACGATAGGACCCAGCCACCTATGCAGTATTACAATAGC
CAAGGGGACACCACACATAAAGGCCTGTACCCTGGCTCCAGCAAACCTTCACCAATATACATCA
GTTCCTATTCCTCACCAGCAAGAGAACAAAACAGACGGCTACAGCACCAACAGCTGTACTATCA
AGATGACTCCACCAGGAAGACCTTGGATGCTTACAGACTGTACCTGCAGTCTCCTCGCAGCTAT
GAAGACCCTTACGGTGATGACCGAGTTCACTTCCCAGCTTCTACTGATTACTCAACGCAGTATG
GACTGAAATCAACCACAAATTACGTAGACTTTTACTCCACTAAACGACCTTCTTATAGAGCCGA
ACAGTACCCTGGGTCCCCGGACTCCTGGGTGTAGCATCAAGACGGCTGCCTGCCGAGGGCCGAT
TTTCTTCTGACTCTGCTTGGACTGAGGGGAGTCCGTCTTGCTGATGATGGTGACCGTGAAAGTG
AAGTGGAAGGGATGAGTGAAGAGGTTTTGTTTGTTTTTTTTTTTTCTTTTTTGAGGAATTTTCA
GGGAAGTGAAGAAACCCTTGGGAGAGGACTTTCTACGCTCTGTGTAGGTGTTAGATCTAATTAC
TTGTAGATTCTAGTGGTGAAGGTGTGGGTGACGTGCTGAGAGGCTTGAGAAGTGGGTGAGATGA
GAGGGGTATGTGTAGGTCAAATCAAATGACAGATGATTTTTTTAATGTGAATAAAGTTATGTTC
AGATAGTTTGTACAGAAAAAAATAATAATAAAATGGATGCCCTTCATGTTTTATTGCTATTACT
AAATGTCAAGATTGTATGCTATTATGTCTTGTAAAAATTCCTTCTGTTGGTGTAAATATGGAAA
TGCCACATTGGTTAAGTGCCATCAATTGTAATGCAGTGTGTCATTTGAAAAGAGATTTGAAGAA
CTGACAGCTTAAAGCCCAAACGGGAAGCCTGAGGAACTGTTAACAGTTGACAACACACTCTGAC
GCCCTGTTTTCAGTGAGTAGTGAACTCTGGAAGCACAAAGTCCAGCGTGACAGCAGCGCCATGC
TCATCCCCCCTTTCACAGGACACTTCACTGCCATTTTCTATGCACATGGAAGAAGAATAAATGT
GGGATTTCATCCTGGA

hide sequence

RefSeq Acc Id:

XM_039106305 ⟹ XP_038962233

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,632,364 - 43,835,834 (+)	NCBI

RefSeq Acc Id:

XM_039106306 ⟹ XP_038962234

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,092,812 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,684,032 - 43,835,834 (+)	NCBI

RefSeq Acc Id:

XM_039106307 ⟹ XP_038962235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,632,364 - 43,835,834 (+)	NCBI

RefSeq Acc Id:

XM_039106308 ⟹ XP_038962236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,632,364 - 43,835,834 (+)	NCBI

RefSeq Acc Id:

XM_039106309 ⟹ XP_038962237

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,632,364 - 43,835,834 (+)	NCBI

RefSeq Acc Id:

XM_039106310 ⟹ XP_038962238

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,632,364 - 43,835,081 (+)	NCBI

RefSeq Acc Id:

XM_039106311 ⟹ XP_038962239

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,632,364 - 43,835,081 (+)	NCBI

RefSeq Acc Id:

XM_039106314 ⟹ XP_038962242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,699,306 - 43,835,081 (+)	NCBI

RefSeq Acc Id:

XM_039106315 ⟹ XP_038962243

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,699,306 - 43,835,081 (+)	NCBI

RefSeq Acc Id:

XM_039106316 ⟹ XP_038962244

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,632,364 - 43,835,453 (+)	NCBI

RefSeq Acc Id:

XM_039106317 ⟹ XP_038962245

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,699,306 - 43,835,453 (+)	NCBI

RefSeq Acc Id:

XM_039106318 ⟹ XP_038962246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,699,306 - 43,835,453 (+)	NCBI

RefSeq Acc Id:

XM_039106321 ⟹ XP_038962249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,123 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,632,374 - 43,835,834 (+)	NCBI

RefSeq Acc Id:

XM_039106322 ⟹ XP_038962250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,108,062 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,632,381 - 43,835,834 (+)	NCBI

RefSeq Acc Id:

XM_039106324 ⟹ XP_038962252

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,108,062 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,699,320 - 43,835,834 (+)	NCBI

RefSeq Acc Id:

XM_039106325 ⟹ XP_038962253

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,157,759 - 64,244,586 (+)	NCBI
mRatBN7.2	3	43,748,995 - 43,835,834 (+)	NCBI

RefSeq Acc Id:

XM_063283250 ⟹ XP_063139320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,092,844 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283251 ⟹ XP_063139321

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283252 ⟹ XP_063139322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283253 ⟹ XP_063139323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283254 ⟹ XP_063139324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,092,845 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283255 ⟹ XP_063139325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283256 ⟹ XP_063139326

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283257 ⟹ XP_063139327

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283258 ⟹ XP_063139328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283259 ⟹ XP_063139329

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,041,122 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283260 ⟹ XP_063139330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,108,062 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283261 ⟹ XP_063139331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,108,062 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283262 ⟹ XP_063139332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,108,062 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283263 ⟹ XP_063139333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,108,062 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283264 ⟹ XP_063139334

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,108,062 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283265 ⟹ XP_063139335

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,108,062 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283266 ⟹ XP_063139336

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,108,062 - 64,244,586 (+)	NCBI

RefSeq Acc Id:

XM_063283267 ⟹ XP_063139337

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	64,108,062 - 64,244,586 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414369	(Get FASTA)	NCBI Sequence Viewer
	XP_006234278	(Get FASTA)	NCBI Sequence Viewer
	XP_017447641	(Get FASTA)	NCBI Sequence Viewer
	XP_038962233	(Get FASTA)	NCBI Sequence Viewer
	XP_038962234	(Get FASTA)	NCBI Sequence Viewer
	XP_038962235	(Get FASTA)	NCBI Sequence Viewer
	XP_038962236	(Get FASTA)	NCBI Sequence Viewer
	XP_038962237	(Get FASTA)	NCBI Sequence Viewer
	XP_038962238	(Get FASTA)	NCBI Sequence Viewer
	XP_038962239	(Get FASTA)	NCBI Sequence Viewer
	XP_038962242	(Get FASTA)	NCBI Sequence Viewer
	XP_038962243	(Get FASTA)	NCBI Sequence Viewer
	XP_038962244	(Get FASTA)	NCBI Sequence Viewer
	XP_038962245	(Get FASTA)	NCBI Sequence Viewer
	XP_038962246	(Get FASTA)	NCBI Sequence Viewer
	XP_038962249	(Get FASTA)	NCBI Sequence Viewer
	XP_038962250	(Get FASTA)	NCBI Sequence Viewer
	XP_038962252	(Get FASTA)	NCBI Sequence Viewer
	XP_038962253	(Get FASTA)	NCBI Sequence Viewer
	XP_063139320	(Get FASTA)	NCBI Sequence Viewer
	XP_063139321	(Get FASTA)	NCBI Sequence Viewer
	XP_063139322	(Get FASTA)	NCBI Sequence Viewer
	XP_063139323	(Get FASTA)	NCBI Sequence Viewer
	XP_063139324	(Get FASTA)	NCBI Sequence Viewer
	XP_063139325	(Get FASTA)	NCBI Sequence Viewer
	XP_063139326	(Get FASTA)	NCBI Sequence Viewer
	XP_063139327	(Get FASTA)	NCBI Sequence Viewer
	XP_063139328	(Get FASTA)	NCBI Sequence Viewer
	XP_063139329	(Get FASTA)	NCBI Sequence Viewer
	XP_063139330	(Get FASTA)	NCBI Sequence Viewer
	XP_063139331	(Get FASTA)	NCBI Sequence Viewer
	XP_063139332	(Get FASTA)	NCBI Sequence Viewer
	XP_063139333	(Get FASTA)	NCBI Sequence Viewer
	XP_063139334	(Get FASTA)	NCBI Sequence Viewer
	XP_063139335	(Get FASTA)	NCBI Sequence Viewer
	XP_063139336	(Get FASTA)	NCBI Sequence Viewer
	XP_063139337	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM00397	(Get FASTA)	NCBI Sequence Viewer
	EDM00398	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056013
	ENSRNOP00000056013.5

RefSeq Acc Id:	XP_006234278 ⟸ XM_006234216
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPAPEQASLVEEGQPQTHQEAVSTGPGMEPETTATTILASVKEQELQFQRLTRELEVERQIVAS QLERCRLGAESPSIASTRYRASGSIFMHPNYVSDSTEKSFPWRSTDVPNTGVSKPRVSDTVHPN NYLIRTEPEQGALYSPEQTSLHESEGSLGNSRSSTQMNSYSDSGYQEAGSFHNSQTVNKADSRQ HPFTGSTSNHVVRNSRAEGQTLVQPSVANRAMRRVSSVPSRAQSPSYVTSTGVSPSRGSLRTSL GSGFGSPSVTDSRPLNPSTYSSSTLPAQRAASPYSQRPASPTAVRRVGSVTSRQTSNPNGPVPQ YQTTTRVGSPLTLTDAQTRVASPSQGQVGSSSPKRSGMTAVPQHLGPSLQRTVHDMDQFGQQQY DIYERMVPPRPDSLTGLRSSYASQHSQLGQDLRSAVSPDLHITPIYEGRTYYSPVYRSPNHGTV ELQGSQTALYRTGSVGIGNLQRTSSQRSTLTYQRNNYALNTAATYAEPYRPVQYRVQECSYNRL PHTGPADDGATRSPSIDSIQKDPSTFKGVIHCLQTSVVFWEFAWRDPELPEVIHMLQHQFPSVQ ANAAAYLQHLCFGDNKVKMEVYRLGGIKHLVDLLDHRVLEVQKNACGALRNLVFGKSTDENKIA MKNVGGIPALLRLLRKSIDAEVRELVTGVLWNLSSCDAVKMTIIRDALSTLTNTVIVPHSGWND SSFDDDHKIKFQTSLVLRNTTGCLRNLSSAGEEARKQMRSCEGLVDSLLYVIHTCVNTSDYDSK TVENCVCTLRNLSYRLELEVPQARLLGLNELDDLLGKESPSKDSEPSCWGKKKKKKKRTPQEDQ WDGVGPIPGLSKSPKGVEMLWHPSVVKPYLTLLAESSNPATLEGSAGSLQNLSAGNWKFAAYIR AAVRKEKGLPILVELLRMDNDRVVSSVATALRNMALDVRNKELIGKYAMRDLVNRLPGGNGPSI LSDETVAAICCALHEVTSKNMENAKALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQ YRDLRSIYKKDGWNQNHFITPVSTLERDRFKSHPSLSTTNQQMSPVIQSVGSTSSSPALLGIRE PRSEYDRTQPPMQYYNSQGDTTHKGLYPGSSKPSPIYISSYSSPAREQNRRLQHQQLYYQDDST RKTLDAYRLYLQSPRSYEDPYGDDRVHFPASTDYSTQYGLKSTTNYVDFYSTKRPSYRAEQYPG SPDSWV hide sequence

RefSeq Acc Id:	XP_017447641 ⟸ XM_017592152
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPAPEQASLVEEGQPQTHQEAVSTGPGMEPETTATTILASVKEQELQFQRLTRELEVERQIVAS QLERCRLGAESPSIASTSSTEKSFPWRSTDVPNTGVSKPRVSDTVHPNNYLIRTEPEQGALYSP EQTSLHESEGSLGNSRSSTQMNSYSDSGYQEAGSFHNSQTVNKADSRQHPFTGSTSNHVVRNSR AEGQTLVQPSVANRAMRRVSSVPSRAQSPSYVTSTGVSPSRGSLRTSLGSGFGSPSVTDSRPLN PSTYSSSTLPAQRAASPYSQRPASPTAVRRVGSVTSRQTSNPNGPVPQYQTTTRVGSPLTLTDA QTRVASPSQGQVGSSSPKRSGMTAVPQHLGPSLQRTVHDMDQFGQQQYDIYERMVPPRPDSLTG LRSSYASQHSQLGQDLRSAVSPDLHITPIYEGRTYYSPVYRSPNHGTVELQGSQTALYRTGSGI GNLQRTSSQRSTLTYQRNNYALNTAATYAEPYRPVQYRVQECSYNRLPHTGPADDGATRSPSID SIQKDPREFAWRDPELPEVIHMLQHQFPSVQANAAAYLQHLCFGDNKVKMEVYRLGGIKHLVDL LDHRVLEVQKNACGALRNLVFGKSTDENKIAMKNVGGIPALLRLLRKSIDAEVRELVTGVLWNL SSCDAVKMTIIRDALSTLTNTVIVPHSGWNDSSFDDDHKIKFQTSLVLRNTTGCLRNLSSAGEE ARKQMRSCEGLVDSLLYVIHTCVNTSDYDSKTVENCVCTLRNLSYRLELEVPQARLLGLNELDD LLGKESPSKDSEPSCWGKKKKKKKRTPQEDQWDGVGPIPGLSKSPKGVEMLWHPSVVKPYLTLL AESSNPATLEGSAGSLQNLSAGNWKFAAYIRAAVRKEKGLPILVELLRMDNDRVVSSVATALRN MALDVRNKELIGKYAMRDLVNRLPGGNGPSILSDETVAAICCALHEVTSKNMENAKALADSGGI EKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFITPVSTLERDRFKSH PSLSTTNQQMSPVIQSVGSTSSSPALLGIREPRSEYDRTQPPMQYYNSQGDTTHKGLYPGSSKP SPIYISSYSSPAREQNRRLQHQQLYYQDDSTRKTLDAYRLYLQSPRSYEDPYGDDRVHFPASTD YSTQYGLKSTTNYVDFYSTKRPSYRAEQYPGSPDSWV hide sequence

Ensembl Acc Id:

ENSRNOP00000056013 ⟸ ENSRNOT00000059246

RefSeq Acc Id:	XP_038962233 ⟸ XM_039106305
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962235 ⟸ XM_039106307
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962236 ⟸ XM_039106308
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962237 ⟸ XM_039106309
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962244 ⟸ XM_039106316
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962238 ⟸ XM_039106310
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962239 ⟸ XM_039106311
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962249 ⟸ XM_039106321
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962250 ⟸ XM_039106322
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962234 ⟸ XM_039106306
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962245 ⟸ XM_039106317
- Peptide Label:	isoform X18
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962246 ⟸ XM_039106318
- Peptide Label:	isoform X20
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962242 ⟸ XM_039106314
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962243 ⟸ XM_039106315
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962252 ⟸ XM_039106324
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962253 ⟸ XM_039106325
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000086370 ⟸ ENSRNOT00000118961

Ensembl Acc Id:

ENSRNOP00000080285 ⟸ ENSRNOT00000111282

Ensembl Acc Id:

ENSRNOP00000087918 ⟸ ENSRNOT00000117979

Ensembl Acc Id:

ENSRNOP00000081746 ⟸ ENSRNOT00000093790

RefSeq Acc Id:	NP_001414369 ⟸ NM_001427440
- UniProtKB:	A0A8I6A880 (UniProtKB/TrEMBL), A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139327 ⟸ XM_063283257
- Peptide Label:	isoform X16
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139325 ⟸ XM_063283255
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139322 ⟸ XM_063283252
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139326 ⟸ XM_063283256
- Peptide Label:	isoform X15
- UniProtKB:	A0A8I6A222 (UniProtKB/TrEMBL), A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139328 ⟸ XM_063283258
- Peptide Label:	isoform X17
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139321 ⟸ XM_063283251
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139323 ⟸ XM_063283253
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139329 ⟸ XM_063283259
- Peptide Label:	isoform X19
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139320 ⟸ XM_063283250
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139324 ⟸ XM_063283254
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139331 ⟸ XM_063283261
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139333 ⟸ XM_063283263
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139335 ⟸ XM_063283265
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139332 ⟸ XM_063283262
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139330 ⟸ XM_063283260
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139337 ⟸ XM_063283267
- Peptide Label:	isoform X22
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139336 ⟸ XM_063283266
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139334 ⟸ XM_063283264
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I5ZTQ8 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M2K6-F1-model_v2	AlphaFold	F1M2K6	1-1190	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307840	AgrOrtholog
BioCyc Gene	G2FUF-49643	BioCyc
Ensembl Genes	ENSRNOG00000005504	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000059246	ENTREZGENE
	ENSRNOT00000059246.7	UniProtKB/TrEMBL
NCBI Gene	295625	ENTREZGENE
PhenoGen	Pkp4	PhenoGen
RatGTEx	ENSRNOG00000005504	RatGTEx
UniProt	A0A8I5ZTQ8	ENTREZGENE
	A0A8I6A222	ENTREZGENE
	A0A8I6A880	ENTREZGENE
	F1M2K6_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Pkp4	plakophilin 4	Pkp4_predicted	plakophilin 4 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Pkp4_predicted	plakophilin 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar