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Gene: Rbms1 (RNA binding motif, single stranded interacting protein 1) Rattus norvegicus

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Symbol:

Rbms1

Name:

RNA binding motif, single stranded interacting protein 1

RGD ID:

1307777

Description:

Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be involved in DNA replication. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol and nucleus. Orthologous to human RBMS1 (RNA binding motif single stranded interacting protein 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC362138; RNA-binding motif, single-stranded-interacting protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	65,604,475 - 65,829,072 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	65,606,358 - 65,829,013 (-)	Ensembl				GRCr8
mRatBN7.2	3	45,195,828 - 45,420,406 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	45,197,972 - 45,420,376 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	48,554,606 - 48,776,212 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	57,138,175 - 57,359,771 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	54,908,213 - 55,130,173 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	46,802,870 - 47,025,178 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	46,803,355 - 47,025,128 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	51,910,791 - 52,132,833 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	42,438,537 - 42,663,729 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	44,893,977 - 45,114,533 (-)	NCBI		Celera
RGSC_v3.1	3	42,334,916 - 42,560,101 (-)	NCBI
Cytogenetic Map	3	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

choline (ISO)

ciglitazone (ISO)

ciguatoxin CTX1B (ISO)

clothianidin (ISO)

cobalt dichloride (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

diethylstilbestrol (ISO)

dimethyl sulfoxide (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

Enterolactone (ISO)

entinostat (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

genistein (EXP)

hydrogen peroxide (ISO)

inulin (ISO)

irinotecan (ISO)

isobutanol (ISO)

ketamine (EXP)

L-methionine (ISO)

lead(0) (ISO)

menadione (ISO)

methapyrilene (EXP)

methotrexate (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

potassium chromate (ISO)

propiconazole (ISO)

quercetin (ISO)

resveratrol (EXP,ISO)

rimonabant (ISO)

SB 431542 (ISO)

selenium atom (ISO)

serpentine asbestos (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

tetrachloromethane (EXP,ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA replication (IEA)

Cellular Component

cytosol (IBA,IEA,ISO)

nucleus (IBA,IEA)

ribonucleoprotein complex (IBA,IEA)

Molecular Function

DNA binding (IEA)

mRNA 3'-UTR binding (IBA)

nucleic acid binding (IEA)

poly(A) binding (IBA)

poly(U) RNA binding (IBA)

protein binding (ISO)

RNA binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Rbms1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	65,604,475 - 65,829,072 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	65,606,358 - 65,829,013 (-)	Ensembl				GRCr8
mRatBN7.2	3	45,195,828 - 45,420,406 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	45,197,972 - 45,420,376 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	48,554,606 - 48,776,212 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	57,138,175 - 57,359,771 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	54,908,213 - 55,130,173 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	46,802,870 - 47,025,178 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	46,803,355 - 47,025,128 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	51,910,791 - 52,132,833 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	42,438,537 - 42,663,729 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	44,893,977 - 45,114,533 (-)	NCBI		Celera
RGSC_v3.1	3	42,334,916 - 42,560,101 (-)	NCBI
Cytogenetic Map	3	q21	NCBI

RBMS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	160,272,151 - 160,493,807 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	160,272,151 - 160,494,100 (-)	Ensembl			hg38	GRCh38
GRCh37	2	161,128,662 - 161,350,318 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	160,838,758 - 161,058,551 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	160,956,021 - 161,175,812	NCBI
Celera	2	154,740,148 - 154,834,898 (-)	NCBI		Celera
Cytogenetic Map	2	q24.2	NCBI
HuRef	2	153,011,878 - 153,233,434 (-)	NCBI		HuRef
CHM1_1	2	161,134,996 - 161,230,229 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	160,729,618 - 160,951,341 (-)	NCBI		T2T-CHM13v2.0

Rbms1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	60,580,537 - 60,794,224 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	60,580,537 - 60,793,536 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	60,750,193 - 60,963,880 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	60,750,193 - 60,963,192 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	60,590,010 - 60,801,261 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	60,553,561 - 60,763,759 (-)	NCBI		MGSCv36	mm8
Celera	2	62,449,205 - 62,660,675 (-)	NCBI		Celera
Cytogenetic Map	2	C1.2	NCBI
cM Map	2	34.95	NCBI

Rbms1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	13,164,401 - 13,370,494 (+)	Ensembl
ChiLan1.0	NW_004955449	13,164,306 - 13,368,011 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBMS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	62,966,726 - 63,186,931 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	62,981,697 - 63,200,950 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	47,568,438 - 47,787,601 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	164,939,363 - 165,158,106 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	164,939,363 - 165,038,851 (-)	Ensembl			panPan2	panpan1.1

RBMS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	5,978,146 - 6,118,409 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	5,980,665 - 6,192,286 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	6,116,486 - 6,330,625 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	6,102,152 - 6,316,323 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	6,104,490 - 6,316,744 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	6,119,175 - 6,333,075 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	6,162,584 - 6,376,460 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	6,271,685 - 6,485,660 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rbms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	123,112,008 - 123,316,749 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	18,300,760 - 18,505,729 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	18,300,984 - 18,505,712 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBMS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	67,194,072 - 67,409,413 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	67,192,880 - 67,409,427 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	74,418,814 - 74,617,798 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBMS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	45,668,578 - 45,887,590 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	45,672,007 - 45,887,163 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	153,687,022 - 153,904,075 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbms1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	5,104,081 - 5,319,372 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624732	5,104,411 - 5,319,372 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rbms1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	38,393,248 - 38,608,607 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rbms1
1746 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	246
Count of miRNA genes:	170
Interacting mature miRNAs:	193
Transcripts:	ENSRNOT00000011682
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	47904172	92904172	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	48657744	93657744	Rat
10450816	Scl75	Serum cholesterol level QTL 75	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	58601291	71157804	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	37796919	82796919	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	3	47904172	70710963	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	38708931	67641995	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	38708931	67641995	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	38708931	67641995	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	38708931	67641995	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	38708931	67641995	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	47904172	70710963	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	38708931	67641995	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	67641995	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	48657744	93657744	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
10450852	Stl33	Serum triglyceride level QTL 33	3.4	0.05	blood LDL triglyceride amount (VT:0010699)	blood lipoprotein triglyceride level (CMO:0002685)	3	58601291	71157804	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
4889975	Bmd81	Bone mineral density QTL 81	4.3		tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	59119402	70710963	Rat
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
634317	Bw117	Body weight QTL 117	3.58		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	59863663	73704481	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	59863663	87321459	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	53651826	98651826	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	48876619	93876619	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	48876619	93876619	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	87321459	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	47904172	70710963	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
10450813	Scl74	Serum cholesterol level QTL 74	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	58601291	71157804	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	83358329	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	48657744	93657744	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	50766145	95766145	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	50766145	95766145	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	83708931	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	48657744	93657744	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	37363734	82363734	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	48657744	93657744	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat

Markers in Region

D3Rat103

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	45,390,714 - 45,390,886 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	45,390,714 - 45,390,751 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	46,995,471 - 46,995,642	NCBI	Rnor6.0
Rnor_6.0	3	46,995,471 - 46,995,507	NCBI	Rnor6.0
Rnor_5.0	3	52,103,176 - 52,103,212	UniSTS	Rnor5.0
Rnor_5.0	3	52,103,176 - 52,103,347	UniSTS	Rnor5.0
RGSC_v3.4	3	42,634,072 - 42,634,108	UniSTS	RGSC3.4
RGSC_v3.4	3	42,634,071 - 42,634,243	RGD	RGSC3.4
RGSC_v3.4	3	42,634,072 - 42,634,243	UniSTS	RGSC3.4
Celera	3	45,084,876 - 45,085,045	UniSTS
Celera	3	45,084,876 - 45,084,912	UniSTS
RGSC_v3.1	3	42,530,430 - 42,530,820	RGD
RH 2.0 Map	3	364.0	RGD
SHRSP x BN Map	3	32.8199	RGD
FHH x ACI Map	3	31.65	RGD
Cytogenetic Map	3	q21	UniSTS

D3Rat83

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	45,391,621 - 45,391,731 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	46,996,378 - 46,996,487	NCBI	Rnor6.0
Rnor_5.0	3	52,104,083 - 52,104,192	UniSTS	Rnor5.0
RGSC_v3.4	3	42,634,979 - 42,635,088	UniSTS	RGSC3.4
RGSC_v3.4	3	42,634,978 - 42,635,088	RGD	RGSC3.4
Celera	3	45,085,785 - 45,085,894	UniSTS
RGSC_v3.1	3	42,531,351 - 42,531,460	RGD
RH 3.4 Map	3	600.83	RGD
RH 3.4 Map	3	600.83	UniSTS
RH 2.0 Map	3	360.8	RGD
SHRSP x BN Map	3	32.8199	RGD
Cytogenetic Map	3	q21	UniSTS

D3Got309

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	65,663,897 - 65,664,047 (+)	Marker Load Pipeline
mRatBN7.2	3	45,255,252 - 45,255,402 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	46,860,146 - 46,860,295	NCBI	Rnor6.0
Rnor_5.0	3	51,968,067 - 51,968,216	UniSTS	Rnor5.0
RGSC_v3.4	3	42,495,342 - 42,495,491	UniSTS	RGSC3.4
Celera	3	44,950,798 - 44,950,947	UniSTS
Cytogenetic Map	3	q21	UniSTS

RH80872

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	45,198,563 - 45,198,720 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	46,803,461 - 46,803,617	NCBI	Rnor6.0
Rnor_5.0	3	51,911,382 - 51,911,538	UniSTS	Rnor5.0
RGSC_v3.4	3	42,438,657 - 42,438,813	UniSTS	RGSC3.4
Celera	3	44,894,097 - 44,894,253	UniSTS
Cytogenetic Map	3	q21	UniSTS

RH80864

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	45,198,563 - 45,198,733 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	46,803,461 - 46,803,630	NCBI	Rnor6.0
Rnor_5.0	3	51,911,382 - 51,911,551	UniSTS	Rnor5.0
RGSC_v3.4	3	42,438,657 - 42,438,826	UniSTS	RGSC3.4
Celera	3	44,894,097 - 44,894,266	UniSTS
Cytogenetic Map	3	q21	UniSTS

RH136033

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	45,198,205 - 45,198,407 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	46,803,103 - 46,803,304	NCBI	Rnor6.0
Rnor_5.0	3	51,911,024 - 51,911,225	UniSTS	Rnor5.0
RGSC_v3.4	3	42,438,299 - 42,438,500	UniSTS	RGSC3.4
Celera	3	44,893,739 - 44,893,940	UniSTS
Cytogenetic Map	3	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC087094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011682 ⟹ ENSRNOP00000011682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	65,606,358 - 65,739,222 (-)	Ensembl
mRatBN7.2 Ensembl	3	45,197,981 - 45,338,927 (-)	Ensembl
Rnor_6.0 Ensembl	3	46,803,355 - 47,025,128 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087439 ⟹ ENSRNOP00000073145

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	65,607,107 - 65,747,686 (-)	Ensembl
mRatBN7.2 Ensembl	3	45,198,449 - 45,330,465 (-)	Ensembl
Rnor_6.0 Ensembl	3	46,803,356 - 46,942,966 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099437 ⟹ ENSRNOP00000095266

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	65,607,107 - 65,829,013 (-)	Ensembl
mRatBN7.2 Ensembl	3	45,197,981 - 45,420,074 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101661 ⟹ ENSRNOP00000094484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	65,607,107 - 65,747,686 (-)	Ensembl
mRatBN7.2 Ensembl	3	45,197,981 - 45,338,927 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112740 ⟹ ENSRNOP00000077414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	65,607,107 - 65,829,013 (-)	Ensembl
mRatBN7.2 Ensembl	3	45,200,636 - 45,420,376 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114670 ⟹ ENSRNOP00000078893

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	65,606,358 - 65,829,013 (-)	Ensembl
mRatBN7.2 Ensembl	3	45,197,972 - 45,420,071 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115982 ⟹ ENSRNOP00000082356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	65,607,107 - 65,747,686 (-)	Ensembl
mRatBN7.2 Ensembl	3	45,197,979 - 45,291,119 (-)	Ensembl

RefSeq Acc Id:

NM_001012184 ⟹ NP_001012184

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,093 - 65,829,013 (-)	NCBI
mRatBN7.2	3	45,198,444 - 45,420,376 (-)	NCBI
Rnor_6.0	3	46,803,341 - 47,025,128 (-)	NCBI
Rnor_5.0	3	51,910,791 - 52,132,833 (-)	NCBI
RGSC_v3.4	3	42,438,537 - 42,663,729 (-)	RGD
Celera	3	44,893,977 - 45,114,533 (-)	RGD

Sequence:

show sequence

GATGCCGCCTGGCACCAAGCGCAGCCGCCGCCGCCGCCGTACTTTCCACTTGTATTGATCACTC
GTAGCTGGGCTCAGCCTGCTCCCGGAGCGCAGCGCGGCCAGAGCGCCAGCCCTTGGCAGCTCGG
GCACAGTCGGGCTCCCAGAGGAAACTCCTTGGGAGCGCCCTGTCCGGGGTGTCCTCTGCGCTCT
GCAGTGTCTTTCTGTCTGCCTGGAAGGAGGAGGAGGAGAAGGAGGAGGAGGAAGAGCAGAAGGA
GGAGGAGGAGGTGGAGGAGGAGGACGTCGTCTGGTCCCGGTTGGGAGGTGGAGCAGTGGCAGCA
GCAGCCGCCGAGGCAGCCGCCGCCGCCGCCTCCGGAAAGGGAGAGGCAGGAGAAAGAGATCGGG
ACTTGGAAAACCTAAAGTGTCTTCGACCCTGCACGGCAGGCTTCCTTCCAGCTTCATGGGCAAA
GTGTGGAAACAACAGATGTACCCTCAGTACGCCACCTATTACTACCCCCAGTATCTGCAAGCCA
AGCAGTCTCTGGTCCCAGCGCACCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCAGTAATAA
CAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTGAGTAAGACGAACCTCTACATCCGA
GGCCTGCCCCCCAACACCACTGATCAAGACCTGGTGAAGCTCTGTCAACCATACGGGAAGATTG
TCTCCACGAAGGCGATTTTGGATAAGGCAACCAACAAGTGCAAAGGTTATGGATTTGTTGACTT
TGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTCCGCCCTGAAGGCGAGTGGAGTCCAGGCTCAG
ATGGCAAAGCAACAGGAACAAGATCCTACCAACCTGTACATTTCTAACCTGCCACTGTCCATGG
ATGAACAAGAACTTGAAAATATGCTCAAACCCTTTGGACAAGTTATTTCTACAAGGGTCCTGCG
TGATTCCAGTGGTACCAGCCGTGGTGTTGGCTTTGCCAGGATGGAATCAACGGAAAAATGCGAA
GCTGTAATTGGTCATTTTAATGGAAAATTCATCAAGACCCCACCAGGAGTTTCTGCTCCTACAG
AACCTTTACTGTGCAAGTTTGCGGATGGAGGACAGAAGAAGAGACAGAACCCAAACAAGTACAT
CCCTAATGGGCGGCCATGGCCCAGAGAAGGAGAGGCCGGAATGACACTCACTTACGACCCGACT
ACAGCTGCTCTACACAACGGATTTTATCCTTCACCATACAGTATTGCCACAAACCGAATGATCA
CTCAAACTTCTCTTACACCCTATATTGCATCTCCTGTATCTGCCTACCAGGTGCAGAGTCCTTC
CTGGATGCAGCCTCAACCATACATTCTGCAGCATCCTGGTGCCGTGTTAACTCCCTCCATGGAA
CACACCATGTCACTACAACCTGCTTCTATGATCAGCCCTCTGGCCCAGCAGATGAGTCACCTGT
CACTAGGCAGCACCGGAACATACATGCCTGCAACGTCAGCCATGCAAGGAGCCTACTTACCACA
GTACACACACATGCAGACTGCGACGGTTCCCGTTGAGGAAGCAAGTGGCCAGCAGCAGGTGACT
GTGGAGACGTCTAATGACCATTCTCCATATACCTTTCCACCCAATAAGTAACTGTGAGATGTAC
CGAAGGGAGTTCTTACATGAAGAAGGGTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAAT
TGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAAATC
AACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGTAGC
TGTTCCCCTGAACAGGTTTATTTTAGTAAAAAACAAAAACAAAACGGAAAAAAAAAAGGAAAAA
AAAAGTCAAAAGATTTTTATCAAATATAATGATGCAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234234 ⟹ XP_006234296

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,747,502 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,338,856 (-)	NCBI
Rnor_6.0	3	46,802,870 - 46,944,581 (-)	NCBI
Rnor_5.0	3	51,910,791 - 52,132,833 (-)	NCBI

Sequence:

show sequence

TGTATGTATGTATGTATGTATGTATGTATATATGTATTCAGCTTGCCATTCATGCAGCCACCCA
AACCTCCTAGATGCCAGACTGTATGTTAAGTAAGCAATCAAGAGGATCTATATACTACCTAGGC
AATCCTCGAAGGTTGAGGAGACCCACAAAGATGGCTACGCTCCACTTTTGGGGGCTATAGAACA
CAGAAGAATTTAGCATCATTCTCCAGAGGACATAGATTCTCACCCTGGAGTAGGATTGATGGTT
CCAGAGGCTATTTAACCAAGAAGTTTGTGATAAATGTGGCAACTATAGAGAGATGGGAGGCATT
TATCATTGGCCAGTGTGCCCAAGGAGAAAGAGCAGTGCTCCTTCAATTATTGAAGTGCCTGTCG
AGGGCTTGCGTGATGGCTCATAAGATAAAGATGCTTGTCACTAAGCCTGATGACCTCCTCAGGA
CCCACGGTGTGAGAGGACCAACTTCTACAAGTTGTCCTCTGATGTCTACATGAAGACATGCACA
TGTCTCTCCCACCCCCCCAAAAAAGTAATAATATAGTTCTAGCTTTATTTTTAAAAATACTCCT
TGCATGATTATTGTATATGCTGGACACAGGGACTGACCCTCATGTAATTACCCTCTGACCTTGA
AATTCTGTATTTTTGGCCTTCATAATTTTTGGCAAGTTGCCTAACCTACCTTCTTGCAGGGTAG
CATGGACGCATCTGCCCTGCCTTTAAGTCTCTTAGTCTTTAAGGGGATAATAAAGTGTTTCTAT
AGATGGTAACGTGTTAATGCATGTATTATAGCTATGAGAGAGACAGAGAGAGACGACAGAGGGA
CAGAGGGACAGAGAGAGATAGTAAAATACTCCAATGTCTTCTGAGAGTCTGGATTTTTATAAGA
ACCCTGTCTTTTACCTATCATTCTTTCTGCCACTGTACTTAAGGTAAGGTTGGGGGTTGGTATG
TTCAGGGGTGGGAATGTGCTTAATATAGCTTGAGTGTTCTGGGAGTGTCCTTACAGTTTGGAAT
TAGGAATTGCTGATGTCATGATCAGCCATATTGTCACGACAACCCTAGAATTTCCTCACGTGCC
TTCTTCTTGCCTTGGGAGTATCGATTTGCCACAGCAGTCTCTGGTCCCAGCGCACCCCATGGCC
CCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGG
ATCAGCTGAGTAAGACGAACCTCTACATCCGAGGCCTGCCCCCCAACACCACTGATCAAGACCT
GGTGAAGCTCTGTCAACCATACGGGAAGATTGTCTCCACGAAGGCGATTTTGGATAAGGCAACC
AACAAGTGCAAAGGTTATGGATTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCT
CCGCCCTGAAGGCGAGTGGAGTCCAGGCTCAGATGGCAAAGCAACAGGAACAAGATCCTACCAA
CCTGTACATTTCTAACCTGCCACTGTCCATGGATGAACAAGAACTTGAAAATATGCTCAAACCC
TTTGGACAAGTTATTTCTACAAGGGTCCTGCGTGATTCCAGTGGTACCAGCCGTGGTGTTGGCT
TTGCCAGGATGGAATCAACGGAAAAATGCGAAGCTGTAATTGGTCATTTTAATGGAAAATTCAT
CAAGACCCCACCAGGAGTTTCTGCTCCTACAGAACCTTTACTGTGCAAGTTTGCGGATGGAGGA
CAGAAGAAGAGACAGAACCCAAACAAGTACATCCCTAATGGGCGGCCATGGCCCAGAGAAGGAG
AGGCCGGAATGACACTCACTTACGACCCGACTACAGCTGCTCTACACAACGGATTTTATCCTTC
ACCATACAGTATTGCCACAAACCGAATGATCACTCAAACTTCTCTTACACCCTATATTGCATCT
CCTGTATCTGCCTACCAGGTGGCAAAGGAAACCAGAGAGAAAAAGTATCGGGGCCCTGCTCTCA
AGGTGCAGAGTCCTTCCTGGATGCAGCCTCAACCATACATTCTGCAGCATCCTGGTGCCGTGTT
AACTCCCTCCATGGAACACACCATGTCACTACAACCTGCTTCTATGATCAGCCCTCTGGCCCAG
CAGATGAGTCACCTGTCACTAGGCAGCACCGGAACATACATGCCTGCAACGTCAGCCATGCAAG
GAGCCTACTTACCACAGTACACACACATGCAGACTGCGACGGTTCCCGTTGAGGAAGCAAGTGG
CCAGCAGCAGGTGACTGTGGAGACGTCTAATGACCATTCTCCATATACCTTTCCACCCAATAAG
TAACTGTGAGATGTACCGAAGGGAGTTCTTACATGAAGAAGGGTGTGAAGGCTGAACAATCATG
GATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGT
TATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTT
AAATTCATCTAGTAGCTGTTCCCCTGAACAGGTTTATTTTAGTAAAAAACAAAAACAAAACGGA
AAAAAAAAAGGAAAAAAAAAGTCAAAAGATTTTTATCAAATATAATGATGCAAAAAAAAAAAAA
AGAAAAAAAAAAGAGAGAAAAAGAAAACTTCAATTTTCTGGGTATGCACAAAGACCACGAAGAC
TTATCCAAGTGCATGACCGGATTTTTGCAGTTTTGTTCATTTTGTGTTTAATTTGTCCCCTTTT
TTTTCAGCTGTATGAAATGGGCTTTCTGAAGTCTTCACTTGTCCAACTTTACCCATGGTGTTCT
GTGCTTGCAAGGGTTGCTGTAACTCAGTGTTGGCCTCACTGTCTTTACTTAGCCTTCCATTTTC
CTTTGGATGTAGTGTGAAGTGTCTTATCCTTTTCTATGAATTCCAATTTGCCTTAAACTCTTTT
GATGCTGTAGCTGTTTCAGTAAAGTTAGTTCAACCTAATGATGTAGAATGCTTTGACCAAATGG
GCTGGTCTATTACGCCTTGTAAAGCAGCAGCATAGGGCTTTTAAAAGGTAGTCAATAAAAGTTG
CTGAAATTTTGGCTTTTTTAAATA

hide sequence

RefSeq Acc Id:

XM_006234235 ⟹ XP_006234297

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,829,036 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,420,405 (-)	NCBI
Rnor_6.0	3	46,802,870 - 47,025,178 (-)	NCBI
Rnor_5.0	3	51,910,791 - 52,132,833 (-)	NCBI

Sequence:

show sequence

CCTCGGCAGCCAGCCCCTCTCCCCTCTCGCTGTCGGGCGCACCCACCCCAGATGCCGCCTGGCA
CCAAGCGCAGCCGCCGCCGCCGCCGTACTTTCCACTTGTATTGATCACTCGTAGCTGGGCTCAG
CCTGCTCCCGGAGCGCAGCGCGGCCAGAGCGCCAGCCCTTGGCAGCTCGGGCACAGTCGGGCTC
CCAGAGGAAACTCCTTGGGAGCGCCCTGTCCGGGGTGTCCTCTGCGCTCTGCAGTGTCTTTCTG
TCTGCCTGGAAGGAGGAGGAGGAGAAGGAGGAGGAGGAAGAGCAGAAGGAGGAGGAGGAGGTGG
AGGAGGAGGACGTCGTCTGGTCCCGGTTGGGAGGTGGAGCAGTGGCAGCAGCAGCCGCCGAGGC
AGCCGCCGCCGCCGCCTCCGGAAAGGGAGAGGCAGGAGAAAGAGATCGGGACTTGGAAAACCTA
AAGTGTCTTCGACCCTGCACGGCAGGCTTCCTTCCAGCTTCATGGGCAAAGTGTGGAAACAACA
GATGTACCCTCAGTACGCCACCTATTACTACCCCCAGTATCTGCAAGCCAAGCAGTCTCTGGTC
CCAGCGCACCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCA
GTAGCAACTCAGGATGGGATCAGCTGAGTAAGACGAACCTCTACATCCGAGGCCTGCCCCCCAA
CACCACTGATCAAGACCTGGTGAAGCTCTGTCAACCATACGGGAAGATTGTCTCCACGAAGGCG
ATTTTGGATAAGGCAACCAACAAGTGCAAAGGTTATGGATTTGTTGACTTTGACAGTCCTGCAG
CAGCCCAGAAAGCTGTCTCCGCCCTGAAGGCGAGTGGAGTCCAGGCTCAGATGGCAAAGCAACA
GGAACAAGATCCTACCAACCTGTACATTTCTAACCTGCCACTGTCCATGGATGAACAAGAACTT
GAAAATATGCTCAAACCCTTTGGACAAGTTATTTCTACAAGGGTCCTGCGTGATTCCAGTGGTA
CCAGCCGTGGTGTTGGCTTTGCCAGGATGGAATCAACGGAAAAATGCGAAGCTGTAATTGGTCA
TTTTAATGGAAAATTCATCAAGACCCCACCAGGAGTTTCTGCTCCTACAGAACCTTTACTGTGC
AAGTTTGCGGATGGAGGACAGAAGAAGAGACAGAACCCAAACAAGTACATCCCTAATGGGCGGC
CATGGCCCAGAGAAGGAGAGGCCGGAATGACACTCACTTACGACCCGACTACAGCTGCTCTACA
CAACGGATTTTATCCTTCACCATACAGTATTGCCACAAACCGAATGATCACTCAAACTTCTCTT
ACACCCTATATTGCATCTCCTGTATCTGCCTACCAGGTGGCAAAGGAAACCAGAGAGAAAAAGT
ATCGGGGCCCTGCTCTCAAGGTGCAGAGTCCTTCCTGGATGCAGCCTCAACCATACATTCTGCA
GCATCCTGGTGCCGTGTTAACTCCCTCCATGGAACACACCATGTCACTACAACCTGCTTCTATG
ATCAGCCCTCTGGCCCAGCAGATGAGTCACCTGTCACTAGGCAGCACCGGAACATACATGCCTG
CAACGTCAGCCATGCAAGGAGCCTACTTACCACAGTACACACACATGCAGACTGCGACGGTTCC
CGTTGAGGAAGCAAGTGGCCAGCAGCAGGTGACTGTGGAGACGTCTAATGACCATTCTCCATAT
ACCTTTCCACCCAATAAGTAACTGTGAGATGTACCGAAGGGAGTTCTTACATGAAGAAGGGTGT
GAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGC
ACAGGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTAT
AAGGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCTGAACAGGTTTATTTTAGTAAA
AAACAAAAACAAAACGGAAAAAAAAAAGGAAAAAAAAAGTCAAAAGATTTTTATCAAATATAAT
GATGCAAAAAAAAAAAAAAGAAAAAAAAAAGAGAGAAAAAGAAAACTTCAATTTTCTGGGTATG
CACAAAGACCACGAAGACTTATCCAAGTGCATGACCGGATTTTTGCAGTTTTGTTCATTTTGTG
TTTAATTTGTCCCCTTTTTTTTCAGCTGTATGAAATGGGCTTTCTGAAGTCTTCACTTGTCCAA
CTTTACCCATGGTGTTCTGTGCTTGCAAGGGTTGCTGTAACTCAGTGTTGGCCTCACTGTCTTT
ACTTAGCCTTCCATTTTCCTTTGGATGTAGTGTGAAGTGTCTTATCCTTTTCTATGAATTCCAA
TTTGCCTTAAACTCTTTTGATGCTGTAGCTGTTTCAGTAAAGTTAGTTCAACCTAATGATGTAG
AATGCTTTGACCAAATGGGCTGGTCTATTACGCCTTGTAAAGCAGCAGCATAGGGCTTTTAAAA
GGTAGTCAATAAAAGTTGCTGAAATTTTGGCTTTTTTAAATA

hide sequence

RefSeq Acc Id:

XM_006234236 ⟹ XP_006234298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,739,306 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,330,639 (-)	NCBI
Rnor_6.0	3	46,802,870 - 46,935,368 (-)	NCBI
Rnor_5.0	3	51,910,791 - 52,132,833 (-)	NCBI

Sequence:

show sequence

GCCGGCGCGCTCTCGGGGCGGTGGTTGAGGCGGCGGGAGGTGGGGACGCGGCGGCGCTGCTCGT
CCGCTGCCGCCGGCTCCGCGCGCGAACTCCGGTCCATGGCACGCAGGGCGGCGGCCCCCGGAGC
TGCTCGAGAGTCGCCGGCCGCGCGCGTCGCGCCGCACTTTTAGGGCGGGAGCCGCGAGCCAGTC
CCCGGCCGCATCCTCCCTCCGCCGTCCCGGACGGGCGAGAGAGGGAGTTCCCGGAGCGCCGCGG
CCCGCGTTGCCTCAGCTCCCCGCGCCCGAGATGATCTTCCCCAGCGGCAGCGGCCACCCCGGCG
CCGCCGGCGGCTGCAGGACGCCCTACCGCAAGCAGCAGTCTCTGGTCCCAGCGCACCCCATGGC
CCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGG
GATCAGCTGAGTAAGACGAACCTCTACATCCGAGGCCTGCCCCCCAACACCACTGATCAAGACC
TGGTGAAGCTCTGTCAACCATACGGGAAGATTGTCTCCACGAAGGCGATTTTGGATAAGGCAAC
CAACAAGTGCAAAGGTTATGGATTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTC
TCCGCCCTGAAGGCGAGTGGAGTCCAGGCTCAGATGGCAAAGCAACAGGAACAAGATCCTACCA
ACCTGTACATTTCTAACCTGCCACTGTCCATGGATGAACAAGAACTTGAAAATATGCTCAAACC
CTTTGGACAAGTTATTTCTACAAGGGTCCTGCGTGATTCCAGTGGTACCAGCCGTGGTGTTGGC
TTTGCCAGGATGGAATCAACGGAAAAATGCGAAGCTGTAATTGGTCATTTTAATGGAAAATTCA
TCAAGACCCCACCAGGAGTTTCTGCTCCTACAGAACCTTTACTGTGCAAGTTTGCGGATGGAGG
ACAGAAGAAGAGACAGAACCCAAACAAGTACATCCCTAATGGGCGGCCATGGCCCAGAGAAGGA
GAGGCCGGAATGACACTCACTTACGACCCGACTACAGCTGCTCTACACAACGGATTTTATCCTT
CACCATACAGTATTGCCACAAACCGAATGATCACTCAAACTTCTCTTACACCCTATATTGCATC
TCCTGTATCTGCCTACCAGGTGGCAAAGGAAACCAGAGAGAAAAAGTATCGGGGCCCTGCTCTC
AAGGTGCAGAGTCCTTCCTGGATGCAGCCTCAACCATACATTCTGCAGCATCCTGGTGCCGTGT
TAACTCCCTCCATGGAACACACCATGTCACTACAACCTGCTTCTATGATCAGCCCTCTGGCCCA
GCAGATGAGTCACCTGTCACTAGGCAGCACCGGAACATACATGCCTGCAACGTCAGCCATGCAA
GGAGCCTACTTACCACAGTACACACACATGCAGACTGCGACGGTTCCCGTTGAGGAAGCAAGTG
GCCAGCAGCAGGTGACTGTGGAGACGTCTAATGACCATTCTCCATATACCTTTCCACCCAATAA
GTAACTGTGAGATGTACCGAAGGGAGTTCTTACATGAAGAAGGGTGTGAAGGCTGAACAATCAT
GGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACG
TTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCT
TAAATTCATCTAGTAGCTGTTCCCCTGAACAGGTTTATTTTAGTAAAAAACAAAAACAAAACGG
AAAAAAAAAAGGAAAAAAAAAGTCAAAAGATTTTTATCAAATATAATGATGCAAAAAAAAAAAA
AAGAAAAAAAAAAGAGAGAAAAAGAAAACTTCAATTTTCTGGGTATGCACAAAGACCACGAAGA
CTTATCCAAGTGCATGACCGGATTTTTGCAGTTTTGTTCATTTTGTGTTTAATTTGTCCCCTTT
TTTTTCAGCTGTATGAAATGGGCTTTCTGAAGTCTTCACTTGTCCAACTTTACCCATGGTGTTC
TGTGCTTGCAAGGGTTGCTGTAACTCAGTGTTGGCCTCACTGTCTTTACTTAGCCTTCCATTTT
CCTTTGGATGTAGTGTGAAGTGTCTTATCCTTTTCTATGAATTCCAATTTGCCTTAAACTCTTT
TGATGCTGTAGCTGTTTCAGTAAAGTTAGTTCAACCTAATGATGTAGAATGCTTTGACCAAATG
GGCTGGTCTATTACGCCTTGTAAAGCAGCAGCATAGGGCTTTTAAAAGGTAGTCAATAAAAGTT
GCTGAAATTTTGGCTTTTTTAAATA

hide sequence

RefSeq Acc Id:

XM_006234237 ⟹ XP_006234299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,604,475 - 65,747,502 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,338,856 (-)	NCBI
Rnor_6.0	3	46,802,870 - 46,944,582 (-)	NCBI
Rnor_5.0	3	51,910,791 - 52,132,833 (-)	NCBI

Sequence:

show sequence

ATGTATGTATGTATGTATGTATGTATGTATATATGTATTCAGCTTGCCATTCATGCAGCCACCC
AAACCTCCTAGATGCCAGACTGTATGTTAAGTAAGCAATCAAGAGGATCTATATACTACCTAGG
CAATCCTCGAAGGTTGAGGAGACCCACAAAGATGGCTACGCTCCACTTTTGGGGGCTATAGAAC
ACAGAAGAATTTAGCATCATTCTCCAGAGGACATAGATTCTCACCCTGGAGTAGGATTGATGGT
TCCAGAGGCTATTTAACCAAGAAGTTTGTGATAAATGTGGCAACTATAGAGAGATGGGAGGCAT
TTATCATTGGCCAGTGTGCCCAAGGAGAAAGAGCAGTGCTCCTTCAATTATTGAAGTGCCTGTC
GAGGGCTTGCGTGATGGCTCATAAGATAAAGATGCTTGTCACTAAGCCTGATGACCTCCTCAGG
ACCCACGGTGTGAGAGGACCAACTTCTACAAGTTGTCCTCTGATGTCTACATGAAGACATGCAC
ATGTCTCTCCCACCCCCCCAAAAAAGTAATAATATAGTTCTAGCTTTATTTTTAAAAATACTCC
TTGCATGATTATTGTATATGCTGGACACAGGGACTGACCCTCATGTAATTACCCTCTGACCTTG
AAATTCTGTATTTTTGGCCTTCATAATTTTTGGCAAGTTGCCTAACCTACCTTCTTGCAGGGTA
GCATGGACGCATCTGCCCTGCCTTTAAGTCTCTTAGTCTTTAAGGGGATAATAAAGTGTTTCTA
TAGATGGTAACGTGTTAATGCATGTATTATAGCTATGAGAGAGACAGAGAGAGACGACAGAGGG
ACAGAGGGACAGAGAGAGATAGTAAAATACTCCAATGTCTTCTGAGAGTCTGGATTTTTATAAG
AACCCTGTCTTTTACCTATCATTCTTTCTGCCACTGTACTTAAGGTAAGGTTGGGGGTTGGTAT
GTTCAGGGGTGGGAATGTGCTTAATATAGCTTGAGTGTTCTGGGAGTGTCCTTACAGTTTGGAA
TTAGGAATTGCTGATGTCATGATCAGCCATATTGTCACGACAACCCTAGAATTTCCTCACGTGC
CTTCTTCTTGCCTTGGGAGTATCGATTTGCCACAGCAGTCTCTGGTCCCAGCGCACCCCATGGC
CCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGG
GATCAGCTGAGTAAGACGAACCTCTACATCCGAGGCCTGCCCCCCAACACCACTGATCAAGACC
TGGTGAAGCTCTGTCAACCATACGGGAAGATTGTCTCCACGAAGGCGATTTTGGATAAGGCAAC
CAACAAGTGCAAAGGTTATGGATTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTC
TCCGCCCTGAAGGCGAGTGGAGTCCAGGCTCAGATGGCAAAGCAACAGGAACAAGATCCTACCA
ACCTGTACATTTCTAACCTGCCACTGTCCATGGATGAACAAGAACTTGAAAATATGCTCAAACC
CTTTGGACAAGTTATTTCTACAAGGGTCCTGCGTGATTCCAGTGGTACCAGCCGTGGTGTTGGC
TTTGCCAGGATGGAATCAACGGAAAAATGCGAAGCTGTAATTGGTCATTTTAATGGAAAATTCA
TCAAGACCCCACCAGGAGTTTCTGCTCCTACAGAACCTTTACTGTGCAAGTTTGCGGATGGAGG
ACAGAAGAAGAGACAGAACCCAAACAAGTACATCCCTAATGGGCGGCCATGGCCCAGAGAAGGA
GAGGCCGGAATGACACTCACTTACGACCCGACTACAGCTGCTCTACACAACGGATTTTATCCTT
CACCATACAGTATTGCCACAAACCGAATGATCACTCAAACTTCTCTTACACCCTATATTGCATC
TCCTGTATCTGCCTACCAGGTGGCAAAGGAAACCAGAGAGAAAAAGTATCGGGGCCCTGCTCTC
AAGGTGCAGAGTCCTTCCTGGATGCAGCCTCAACCATACATTCTGCAGCATCCTGGTGCCGTGT
TAACTCCCTCCATGGAACACACCATGTCACTACAACCTGCTTCTATGATCAGCCCTCTGGCCCA
GCAGATGAGTCACCTGTCACTAGGCAGCACCGGAACATACATGCCTGCAACGTCAGCCATGCAA
GGAGCCTACTTACCACAGTACACACACATGCAGACTGCGACGGTTCCCGTTGAGATGTACCGAA
GGGAGTTCTTACATGAAGAAGGGTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTG
CTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAAATCAACT
AAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTT
CCCCTGAACAGGTTTATTTTAGTAAAAAACAAAAACAAAACGGAAAAAAAAAAGGAAAAAAAAA
GTCAAAAGATTTTTATCAAATATAATGATGCAAAAAAAAAAAAAAGAAAAAAAAAAGAGAGAAA
AAGAAAACTTCAATTTTCTGGGTATGCACAAAGACCACGAAGACTTATCCAAGTGCATGACCGG
ATTTTTGCAGTTTTGTTCATTTTGTGTTTAATTTGTCCCCTTTTTTTTCAGCTGTATGAAATGG
GCTTTCTGAAGTCTTCACTTGTCCAACTTTACCCATGGTGTTCTGTGCTTGCAAGGGTTGCTGT
AACTCAGTGTTGGCCTCACTGTCTTTACTTAGCCTTCCATTTTCCTTTGGATGTAGTGTGAAGT
GTCTTATCCTTTTCTATGAATTCCAATTTGCCTTAAACTCTTTTGATGCTGTAGCTGTTTCAGT
AAAGTTAGTTCAACCTAATGATGTAGAATGCTTTGACCAAATGGGCTGGTCTATTACGCCTTGT
AAAGCAGCAGCATAGGGCTTTTAAAAGGTAGTCAATAAAAGTTGCTGAAATTTTGGCTTTTTTA
AATA

hide sequence

RefSeq Acc Id:

XM_006234238 ⟹ XP_006234300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,747,502 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,338,856 (-)	NCBI
Rnor_6.0	3	46,802,870 - 46,944,581 (-)	NCBI
Rnor_5.0	3	51,910,791 - 52,132,833 (-)	NCBI

Sequence:

show sequence

TGTATGTATGTATGTATGTATGTATGTATATATGTATTCAGCTTGCCATTCATGCAGCCACCCA
AACCTCCTAGATGCCAGACTGTATGTTAAGTAAGCAATCAAGAGGATCTATATACTACCTAGGC
AATCCTCGAAGGTTGAGGAGACCCACAAAGATGGCTACGCTCCACTTTTGGGGGCTATAGAACA
CAGAAGAATTTAGCATCATTCTCCAGAGGACATAGATTCTCACCCTGGAGTAGGATTGATGGTT
CCAGAGGCTATTTAACCAAGAAGTTTGTGATAAATGTGGCAACTATAGAGAGATGGGAGGCATT
TATCATTGGCCAGTGTGCCCAAGGAGAAAGAGCAGTGCTCCTTCAATTATTGAAGTGCCTGTCG
AGGGCTTGCGTGATGGCTCATAAGATAAAGATGCTTGTCACTAAGCCTGATGACCTCCTCAGGA
CCCACGGTGTGAGAGGACCAACTTCTACAAGTTGTCCTCTGATGTCTACATGAAGACATGCACA
TGTCTCTCCCACCCCCCCAAAAAAGTAATAATATAGTTCTAGCTTTATTTTTAAAAATACTCCT
TGCATGATTATTGTATATGCTGGACACAGGGACTGACCCTCATGTAATTACCCTCTGACCTTGA
AATTCTGTATTTTTGGCCTTCATAATTTTTGGCAAGTTGCCTAACCTACCTTCTTGCAGGGTAG
CATGGACGCATCTGCCCTGCCTTTAAGTCTCTTAGTCTTTAAGGGGATAATAAAGTGTTTCTAT
AGATGGTAACGTGTTAATGCATGTATTATAGCTATGAGAGAGACAGAGAGAGACGACAGAGGGA
CAGAGGGACAGAGAGAGATAGTAAAATACTCCAATGTCTTCTGAGAGTCTGGATTTTTATAAGA
ACCCTGTCTTTTACCTATCATTCTTTCTGCCACTGTACTTAAGGTAAGGTTGGGGGTTGGTATG
TTCAGGGGTGGGAATGTGCTTAATATAGCTTGAGTGTTCTGGGAGTGTCCTTACAGTTTGGAAT
TAGGAATTGCTGATGTCATGATCAGCCATATTGTCACGACAACCCTAGAATTTCCTCACGTGCC
TTCTTCTTGCCTTGGGAGTATCGATTTGCCACAGCAGTCTCTGGTCCCAGCGCACCCCATGGCC
CCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGG
ATCAGCTGAGTAAGACGAACCTCTACATCCGAGGCCTGCCCCCCAACACCACTGATCAAGACCT
GGTGAAGCTCTGTCAACCATACGGGAAGATTGTCTCCACGAAGGCGATTTTGGATAAGGCAACC
AACAAGTGCAAAGGTTATGGATTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCT
CCGCCCTGAAGGCGAGTGGAGTCCAGGCTCAGATGGCAAAGCAACAGGAACAAGATCCTACCAA
CCTGTACATTTCTAACCTGCCACTGTCCATGGATGAACAAGAACTTGAAAATATGCTCAAACCC
TTTGGACAAGTTATTTCTACAAGGGTCCTGCGTGATTCCAGTGGTACCAGCCGTGGTGTTGGCT
TTGCCAGGATGGAATCAACGGAAAAATGCGAAGCTGTAATTGGTCATTTTAATGGAAAATTCAT
CAAGACCCCACCAGGAGTTTCTGCTCCTACAGAACCTTTACTGTGCAAGTTTGCGGATGGAGGA
CAGAAGAAGAGACAGAACCCAAACAAGTACATCCCTAATGGGCGGCCATGGCCCAGAGAAGGAG
AGGCCGGAATGACACTCACTTACGACCCGACTACAGCTGCTCTACACAACGGATTTTATCCTTC
ACCATACAGTATTGCCACAAACCGAATGATCACTCAAACTTCTCTTACACCCTATATTGCATCT
CCTGTATCTGCCTACCAGGTGCAGAGTCCTTCCTGGATGCAGCCTCAACCATACATTCTGCAGC
ATCCTGGTGCCGTGTTAACTCCCTCCATGGAACACACCATGTCACTACAACCTGCTTCTATGAT
CAGCCCTCTGGCCCAGCAGATGAGTCACCTGTCACTAGGCAGCACCGGAACATACATGCCTGCA
ACGTCAGCCATGCAAGGAGCCTACTTACCACAGTACACACACATGCAGACTGCGACGGTTCCCG
TTGAGGAAGCAAGTGGCCAGCAGCAGGTGACTGTGGAGACGTCTAATGACCATTCTCCATATAC
CTTTCCACCCAATAAGTAACTGTGAGATGTACCGAAGGGAGTTCTTACATGAAGAAGGGTGTGA
AGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCAC
AGGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAA
GGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCTGAACAGGTTTATTTTAGTAAAAA
ACAAAAACAAAACGGAAAAAAAAAAGGAAAAAAAAAGTCAAAAGATTTTTATCAAATATAATGA
TGCAAAAAAAAAAAAAAGAAAAAAAAAAGAGAGAAAAAGAAAACTTCAATTTTCTGGGTATGCA
CAAAGACCACGAAGACTTATCCAAGTGCATGACCGGATTTTTGCAGTTTTGTTCATTTTGTGTT
TAATTTGTCCCCTTTTTTTTCAGCTGTATGAAATGGGCTTTCTGAAGTCTTCACTTGTCCAACT
TTACCCATGGTGTTCTGTGCTTGCAAGGGTTGCTGTAACTCAGTGTTGGCCTCACTGTCTTTAC
TTAGCCTTCCATTTTCCTTTGGATGTAGTGTGAAGTGTCTTATCCTTTTCTATGAATTCCAATT
TGCCTTAAACTCTTTTGATGCTGTAGCTGTTTCAGTAAAGTTAGTTCAACCTAATGATGTAGAA
TGCTTTGACCAAATGGGCTGGTCTATTACGCCTTGTAAAGCAGCAGCATAGGGCTTTTAAAAGG
TAGTCAATAAAAGTTGCTGAAATTTTGGCTTTTTTAAATA

hide sequence

RefSeq Acc Id:

XM_006234239 ⟹ XP_006234301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,746,917 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,338,271 (-)	NCBI
Rnor_6.0	3	46,802,870 - 46,943,553 (-)	NCBI
Rnor_5.0	3	51,910,791 - 52,132,833 (-)	NCBI

Sequence:

show sequence

AATTGCTGATGTCATGATCAGCCATATTGTCACGACAACCCTAGAATTTCCTCACGTGCCTTCT
TCTTGCCTTGGGAGTATCGATTTGCCACAGGTCTGACGTCAGTATACCCCGTGTGTTAAATGTG
TTAGGTAACCCAGAACTTGTCATTCTTACAAACACTTAGGGTGGGGCGTTTGTATAAGCTTCTG
AGGTATCCGTCCTATTTCAGGATTCTCAGCTACATATCCTAACGTTGGAAAGTTTGCCTTCATG
CATATTCAACTGAATCGAAATCCACTTGTAATTCTGTTTATTCTTGTTTGAACTTTATAATTCA
GTAGAGAATGAGAAACTCATCTTCATTCTCATTTCCATAAAGGAAGCCATTAATTATTCGAGCA
TCTCCCTCTTCAGGTGAAATAGACCTAATTTAATAATGATCTTAGTAACTGAAGAGACAAGAAA
CTTTTTATTGGTTTCCTTTCCTTTTTTGGAATGCCTTGAGCTGAACTCCTGTTAAGGACCTGCC
CCAACATTTAGCATTTGTGTTTTAACAACCTTATTACTGTTCTCAGCTGACGAGGGGTTTGTTT
GTCCCAGGTACAGTTTGCTGTGCACTCTCAAAGTTGTCATTCACCTAATTGAATTTTACTCATG
GAAAGGAGGTGGTTATTCCAGATGCTGTAGCAGAGAGGAGGGTGCAATTAGCAGTTTTCCAGCC
TTGCTTTCCCGAGCTGTTGTTCTTACCCCAGTTCACACATGGACAGATGATTATGCTACTTCTA
GCTCCCCAGCAGTCTCTGGTCCCAGCGCACCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCA
GTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTGAGTAAGACGAACCTCTA
CATCCGAGGCCTGCCCCCCAACACCACTGATCAAGACCTGGTGAAGCTCTGTCAACCATACGGG
AAGATTGTCTCCACGAAGGCGATTTTGGATAAGGCAACCAACAAGTGCAAAGGTTATGGATTTG
TTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTCCGCCCTGAAGGCGAGTGGAGTCCA
GGCTCAGATGGCAAAGCAACAGGAACAAGATCCTACCAACCTGTACATTTCTAACCTGCCACTG
TCCATGGATGAACAAGAACTTGAAAATATGCTCAAACCCTTTGGACAAGTTATTTCTACAAGGG
TCCTGCGTGATTCCAGTGGTACCAGCCGTGGTGTTGGCTTTGCCAGGATGGAATCAACGGAAAA
ATGCGAAGCTGTAATTGGTCATTTTAATGGAAAATTCATCAAGACCCCACCAGGAGTTTCTGCT
CCTACAGAACCTTTACTGTGCAAGTTTGCGGATGGAGGACAGAAGAAGAGACAGAACCCAAACA
AGTACATCCCTAATGGGCGGCCATGGCCCAGAGAAGGAGAGGCCGGAATGACACTCACTTACGA
CCCGACTACAGCTGCTCTACACAACGGATTTTATCCTTCACCATACAGTATTGCCACAAACCGA
ATGATCACTCAAACTTCTCTTACACCCTATATTGCATCTCCTGTATCTGCCTACCAGGTGGCAA
AGGAAACCAGAGAGAAAAAGTATCGGGGCCCTGCTCTCAAGGTGCAGAGTCCTTCCTGGATGCA
GCCTCAACCATACATTCTGCAGCATCCTGGTGCCGTGTTAACTCCCTCCATGGAACACACCATG
TCACTACAACCTGCTTCTATGATCAGCCCTCTGGCCCAGCAGATGAGTCACCTGTCACTAGGCA
GCACCGGAACATACATGCCTGCAACGTCAGCCATGCAAGGAGCCTACTTACCACAGTACACACA
CATGCAGACTGCGACGGTTCCCGTTGAGGAAGCAAGTGGCCAGCAGCAGGTGACTGTGGAGACG
TCTAATGACCATTCTCCATATACCTTTCCACCCAATAAGTAACTGTGAGATGTACCGAAGGGAG
TTCTTACATGAAGAAGGGTGTGAAGGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTA
GGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAAC
TATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCT
GAACAGGTTTATTTTAGTAAAAAACAAAAACAAAACGGAAAAAAAAAAGGAAAAAAAAAGTCAA
AAGATTTTTATCAAATATAATGATGCAAAAAAAAAAAAAAGAAAAAAAAAAGAGAGAAAAAGAA
AACTTCAATTTTCTGGGTATGCACAAAGACCACGAAGACTTATCCAAGTGCATGACCGGATTTT
TGCAGTTTTGTTCATTTTGTGTTTAATTTGTCCCCTTTTTTTTCAGCTGTATGAAATGGGCTTT
CTGAAGTCTTCACTTGTCCAACTTTACCCATGGTGTTCTGTGCTTGCAAGGGTTGCTGTAACTC
AGTGTTGGCCTCACTGTCTTTACTTAGCCTTCCATTTTCCTTTGGATGTAGTGTGAAGTGTCTT
ATCCTTTTCTATGAATTCCAATTTGCCTTAAACTCTTTTGATGCTGTAGCTGTTTCAGTAAAGT
TAGTTCAACCTAATGATGTAGAATGCTTTGACCAAATGGGCTGGTCTATTACGCCTTGTAAAGC
AGCAGCATAGGGCTTTTAAAAGGTAGTCAATAAAAGTTGCTGAAATTTTGGCTTTTTTAAATA

hide sequence

RefSeq Acc Id:

XM_006234241 ⟹ XP_006234303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,739,306 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,330,637 (-)	NCBI
Rnor_6.0	3	46,802,870 - 46,935,366 (-)	NCBI
Rnor_5.0	3	51,910,791 - 52,132,833 (-)	NCBI

Sequence:

show sequence

CGGCGCGCTCTCGGGGCGGTGGTTGAGGCGGCGGGAGGTGGGGACGCGGCGGCGCTGCTCGTCC
GCTGCCGCCGGCTCCGCGCGCGAACTCCGGTCCATGGCACGCAGGGCGGCGGCCCCCGGAGCTG
CTCGAGAGTCGCCGGCCGCGCGCGTCGCGCCGCACTTTTAGGGCGGGAGCCGCGAGCCAGTCCC
CGGCCGCATCCTCCCTCCGCCGTCCCGGACGGGCGAGAGAGGGAGTTCCCGGAGCGCCGCGGCC
CGCGTTGCCTCAGCTCCCCGCGCCCGAGATGATCTTCCCCAGCGGCAGCGGCCACCCCGGCGCC
GCCGGCGGCTGCAGGACGCCCTACCGCAAGCAGCAGTCTCTGGTCCCAGCGCACCCCATGGCCC
CTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGA
TCAGCTGAGTAAGACGAACCTCTACATCCGAGGCCTGCCCCCCAACACCACTGATCAAGACCTG
GTGAAGCTCTGTCAACCATACGGGAAGATTGTCTCCACGAAGGCGATTTTGGATAAGGCAACCA
ACAAGTGCAAAGGTTATGGATTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTC
CGCCCTGAAGGCGAGTGGAGTCCAGGCTCAGATGGCAAAGCAACAGGAACAAGATCCTACCAAC
CTGTACATTTCTAACCTGCCACTGTCCATGGATGAACAAGAACTTGAAAATATGCTCAAACCCT
TTGGACAAGTTATTTCTACAAGGGTCCTGCGTGATTCCAGTGGTACCAGCCGTGGTGTTGGCTT
TGCCAGGATGGAATCAACGGAAAAATGCGAAGCTGTAATTGGTCATTTTAATGGAAAATTCATC
AAGACCCCACCAGGAGTTTCTGCTCCTACAGAACCTTTACTGTGCAAGTTTGCGGATGGAGGAC
AGAAGAAGAGACAGAACCCAAACAAGTACATCCCTAATGGGCGGCCATGGCCCAGAGAAGGAGA
GGCCGGAATGACACTCACTTACGACCCGACTACAGCTGCTCTACACAACGGATTTTATCCTTCA
CCATACAGTATTGCCACAAACCGAATGATCACTCAAACTTCTCTTACACCCTATATTGCATCTC
CTGTATCTGCCTACCAGGTGCAGAGTCCTTCCTGGATGCAGCCTCAACCATACATTCTGCAGCA
TCCTGGTGCCGTGTTAACTCCCTCCATGGAACACACCATGTCACTACAACCTGCTTCTATGATC
AGCCCTCTGGCCCAGCAGATGAGTCACCTGTCACTAGGCAGCACCGGAACATACATGCCTGCAA
CGTCAGCCATGCAAGGAGCCTACTTACCACAGTACACACACATGCAGACTGCGACGGTTCCCGT
TGAGGAAGCAAGTGGCCAGCAGCAGGTGACTGTGGAGACGTCTAATGACCATTCTCCATATACC
TTTCCACCCAATAAGTAACTGTGAGATGTACCGAAGGGAGTTCTTACATGAAGAAGGGTGTGAA
GGCTGAACAATCATGGATTTTTCTGATCAATTGTGCTTTAGGAAATTATTGACAGTTTTGCACA
GGTTCTTGAAAACGTTATTTATAATGAAATCAACTAAAACTATTTTTGCTATAAGTTCTATAAG
GTGCATAAAACCCTTAAATTCATCTAGTAGCTGTTCCCCTGAACAGGTTTATTTTAGTAAAAAA
CAAAAACAAAACGGAAAAAAAAAAGGAAAAAAAAAGTCAAAAGATTTTTATCAAATATAATGAT
GCAAAAAAAAAAAAAAGAAAAAAAAAAGAGAGAAAAAGAAAACTTCAATTTTCTGGGTATGCAC
AAAGACCACGAAGACTTATCCAAGTGCATGACCGGATTTTTGCAGTTTTGTTCATTTTGTGTTT
AATTTGTCCCCTTTTTTTTCAGCTGTATGAAATGGGCTTTCTGAAGTCTTCACTTGTCCAACTT
TACCCATGGTGTTCTGTGCTTGCAAGGGTTGCTGTAACTCAGTGTTGGCCTCACTGTCTTTACT
TAGCCTTCCATTTTCCTTTGGATGTAGTGTGAAGTGTCTTATCCTTTTCTATGAATTCCAATTT
GCCTTAAACTCTTTTGATGCTGTAGCTGTTTCAGTAAAGTTAGTTCAACCTAATGATGTAGAAT
GCTTTGACCAAATGGGCTGGTCTATTACGCCTTGTAAAGCAGCAGCATAGGGCTTTTAAAAGGT
AGTCAATAAAAGTTGCTGAAATTTTGGCTTTTTTAAATA

hide sequence

RefSeq Acc Id:

XM_017591893 ⟹ XP_017447382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,746,920 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,338,252 (-)	NCBI
Rnor_6.0	3	46,802,870 - 46,943,553 (-)	NCBI

Sequence:

show sequence

AATTGCTGATGTCATGATCAGCCATATTGTCACGACAACCCTAGAATTTCCTCACGTGCCTTCT
TCTTGCCTTGGGAGTATCGATTTGCCACAGGTCTGACGTCAGTATACCCCGTGTGTTAAATGTG
TTAGGTAACCCAGAACTTGTCATTCTTACAAACACTTAGGGTGGGGCGTTTGTATAAGCTTCTG
AGGTATCCGTCCTATTTCAGGATTCTCAGCTACATATCCTAACGTTGGAAAGTTTGCCTTCATG
CATATTCAACTGAATCGAAATCCACTTGTAATTCTGTTTATTCTTGTTTGAACTTTATAATTCA
GTAGAGAATGAGAAACTCATCTTCATTCTCATTTCCATAAAGGAAGCCATTAATTATTCGAGCA
TCTCCCTCTTCAGGTGAAATAGACCTAATTTAATAATGATCTTAGTAACTGAAGAGACAAGAAA
CTTTTTATTGGTTTCCTTTCCTTTTTTGGAATGCCTTGAGCTGAACTCCTGTTAAGGACCTGCC
CCAACATTTAGCATTTGTGTTTTAACAACCTTATTACTGTTCTCAGCTGACGAGGGGTTTGTTT
GTCCCAGGTACAGTTTGCTGTGCACTCTCAAAGTTGTCATTCACCTAATTGAATTTTACTCATG
GAAAGGAGGTGGTTATTCCAGCAGTCTCTGGTCCCAGCGCACCCCATGGCCCCTCCCAGTCCCA
GCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTGAGTAA
GACGAACCTCTACATCCGAGGCCTGCCCCCCAACACCACTGATCAAGACCTGGTGAAGCTCTGT
CAACCATACGGGAAGATTGTCTCCACGAAGGCGATTTTGGATAAGGCAACCAACAAGTGCAAAG
GTTATGGATTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTCCGCCCTGAAGGC
GAGTGGAGTCCAGGCTCAGATGGCAAAGCAACAGGAACAAGATCCTACCAACCTGTACATTTCT
AACCTGCCACTGTCCATGGATGAACAAGAACTTGAAAATATGCTCAAACCCTTTGGACAAGTTA
TTTCTACAAGGGTCCTGCGTGATTCCAGTGGTACCAGCCGTGGTGTTGGCTTTGCCAGGATGGA
ATCAACGGAAAAATGCGAAGCTGTAATTGGTCATTTTAATGGAAAATTCATCAAGACCCCACCA
GGAGTTTCTGCTCCTACAGAACCTTTACTGTGCAAGTTTGCGGATGGAGGACAGAAGAAGAGAC
AGAACCCAAACAAGTACATCCCTAATGGGCGGCCATGGCCCAGAGAAGGAGAGGCCGGAATGAC
ACTCACTTACGACCCGACTACAGCTGCTCTACACAACGGATTTTATCCTTCACCATACAGTATT
GCCACAAACCGAATGATCACTCAAACTTCTCTTACACCCTATATTGCATCTCCTGTATCTGCCT
ACCAGGTGGCAAAGGAAACCAGAGAGAAAAAGTATCGGGGCCCTGCTCTCAAGGTGCAGAGTCC
TTCCTGGATGCAGCCTCAACCATACATTCTGCAGCATCCTGGTGCCGTGTTAACTCCCTCCATG
GAACACACCATGTCACTACAACCTGCTTCTATGATCAGCCCTCTGGCCCAGCAGATGAGTCACC
TGTCACTAGGCAGCACCGGAACATACATGCCTGCAACGTCAGCCATGCAAGGAGCCTACTTACC
ACAGTACACACACATGCAGACTGCGACGGTTCCCGTTGAGGAAGCAAGTGGCCAGCAGCAGGTG
ACTGTGGAGACGTCTAATGACCATTCTCCATATACCTTTCCACCCAATAAGTAACTGTGAGATG
TACCGAAGGGAGTTCTTACATGAAGAAGGGTGTGAAGGCTGAACAATCATGGATTTTTCTGATC
AATTGTGCTTTAGGAAATTATTGACAGTTTTGCACAGGTTCTTGAAAACGTTATTTATAATGAA
ATCAACTAAAACTATTTTTGCTATAAGTTCTATAAGGTGCATAAAACCCTTAAATTCATCTAGT
AGCTGTTCCCCTGAACAGGTTTATTTTAGTAAAAAACAAAAACAAAACGGAAAAAAAAAAGGAA
AAAAAAAGTCAAAAGATTTTTATCAAATATAATGATGCAAAAAAAAAAAAAAGAAAAAAAAAAG
AGAGAAAAAGAAAACTTCAATTTTCTGGGTATGCACAAAGACCACGAAGACTTATCCAAGTGCA
TGACCGGATTTTTGCAGTTTTGTTCATTTTGTGTTTAATTTGTCCCCTTTTTTTTCAGCTGTAT
GAAATGGGCTTTCTGAAGTCTTCACTTGTCCAACTTTACCCATGGTGTTCTGTGCTTGCAAGGG
TTGCTGTAACTCAGTGTTGGCCTCACTGTCTTTACTTAGCCTTCCATTTTCCTTTGGATGTAGT
GTGAAGTGTCTTATCCTTTTCTATGAATTCCAATTTGCCTTAAACTCTTTTGATGCTGTAGCTG
TTTCAGTAAAGTTAGTTCAACCTAATGATGTAGAATGCTTTGACCAAATGGGCTGGTCTATTAC
GCCTTGTAAAGCAGCAGCATAGGGCTTTTAAAAGGTAGTCAATAAAAGTTGCTGAAATTTTGGC
TTTTTTAAATA

hide sequence

RefSeq Acc Id:

XM_039105393 ⟹ XP_038961321

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,829,038 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,420,406 (-)	NCBI

RefSeq Acc Id:

XM_039105394 ⟹ XP_038961322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,739,284 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,330,640 (-)	NCBI

RefSeq Acc Id:

XM_039105397 ⟹ XP_038961325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,747,436 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,338,784 (-)	NCBI

RefSeq Acc Id:

XM_039105398 ⟹ XP_038961326

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,635,535 (-)	NCBI
mRatBN7.2	3	45,195,828 - 45,226,890 (-)	NCBI

RefSeq Acc Id:

XM_063284113 ⟹ XP_063140183

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,604,475 - 65,829,038 (-)	NCBI

RefSeq Acc Id:

XM_063284114 ⟹ XP_063140184

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,604,475 - 65,747,502 (-)	NCBI

RefSeq Acc Id:

XM_063284115 ⟹ XP_063140185

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,604,475 - 65,829,072 (-)	NCBI

RefSeq Acc Id:

XM_063284116 ⟹ XP_063140186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,604,475 - 65,739,311 (-)	NCBI

RefSeq Acc Id:

XM_063284117 ⟹ XP_063140187

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	65,607,259 - 65,747,442 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012184	(Get FASTA)	NCBI Sequence Viewer
	XP_006234296	(Get FASTA)	NCBI Sequence Viewer
	XP_006234297	(Get FASTA)	NCBI Sequence Viewer
	XP_006234298	(Get FASTA)	NCBI Sequence Viewer
	XP_006234299	(Get FASTA)	NCBI Sequence Viewer
	XP_006234300	(Get FASTA)	NCBI Sequence Viewer
	XP_006234301	(Get FASTA)	NCBI Sequence Viewer
	XP_006234303	(Get FASTA)	NCBI Sequence Viewer
	XP_017447382	(Get FASTA)	NCBI Sequence Viewer
	XP_038961321	(Get FASTA)	NCBI Sequence Viewer
	XP_038961322	(Get FASTA)	NCBI Sequence Viewer
	XP_038961325	(Get FASTA)	NCBI Sequence Viewer
	XP_038961326	(Get FASTA)	NCBI Sequence Viewer
	XP_063140183	(Get FASTA)	NCBI Sequence Viewer
	XP_063140184	(Get FASTA)	NCBI Sequence Viewer
	XP_063140185	(Get FASTA)	NCBI Sequence Viewer
	XP_063140186	(Get FASTA)	NCBI Sequence Viewer
	XP_063140187	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87094	(Get FASTA)	NCBI Sequence Viewer
	EDL78986	(Get FASTA)	NCBI Sequence Viewer
	EDL78989	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011682
	ENSRNOP00000073145
	ENSRNOP00000077414
	ENSRNOP00000078893
	ENSRNOP00000082356
	ENSRNOP00000094484
	ENSRNOP00000095266
GenBank Protein	Q5PQP1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012184 ⟸ NM_001012184

- UniProtKB:

Q5PQP1 (UniProtKB/Swiss-Prot), A6HLT5 (UniProtKB/TrEMBL), A0A8L2Q545 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNL
YIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGV
QAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTE
KCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTLTY
DPTTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTP
SMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTATVPVEEASGQQ
QVTVETSNDHSPYTFPPNK

hide sequence

RefSeq Acc Id:	XP_006234297 ⟸ XM_006234235
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2Q545 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNL YIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGV QAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTE KCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTLTY DPTTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQVAKETREKKYRGPALKVQSPSWM QPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYT HMQTATVPVEEASGQQQVTVETSNDHSPYTFPPNK hide sequence

RefSeq Acc Id:	XP_006234300 ⟸ XM_006234238
- Peptide Label:	isoform X8
- UniProtKB:	A0A8L2Q545 (UniProtKB/TrEMBL)
- Sequence:	show sequence MISHIVTTTLEFPHVPSSCLGSIDLPQQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKT NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKAS GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMES TEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTL TYDPTTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQVQSPSWMQPQPYILQHPGAVL TPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTATVPVEEASG QQQVTVETSNDHSPYTFPPNK hide sequence

RefSeq Acc Id:	XP_006234299 ⟸ XM_006234237
- Peptide Label:	isoform X6
- UniProtKB:	A0A8L2Q545 (UniProtKB/TrEMBL)
- Sequence:	show sequence MISHIVTTTLEFPHVPSSCLGSIDLPQQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKT NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKAS GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMES TEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTL TYDPTTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQVAKETREKKYRGPALKVQSPS WMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQ YTHMQTATVPVEMYRREFLHEEGCEG hide sequence

RefSeq Acc Id:	XP_006234296 ⟸ XM_006234234
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2Q545 (UniProtKB/TrEMBL)
- Sequence:	show sequence MISHIVTTTLEFPHVPSSCLGSIDLPQQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKT NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKAS GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMES TEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTL TYDPTTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQVAKETREKKYRGPALKVQSPS WMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQ YTHMQTATVPVEEASGQQQVTVETSNDHSPYTFPPNK hide sequence

RefSeq Acc Id:	XP_006234301 ⟸ XM_006234239
- Peptide Label:	isoform X9
- UniProtKB:	A0A8L2Q545 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIMLLLAPQQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVK LCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLY ISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT PPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTLTYDPTTAALHNGFYPSPY SIATNRMITQTSLTPYIASPVSAYQVAKETREKKYRGPALKVQSPSWMQPQPYILQHPGAVLTP SMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTATVPVEEASGQQ QVTVETSNDHSPYTFPPNK hide sequence

RefSeq Acc Id:	XP_006234298 ⟸ XM_006234236
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K4R7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIFPSGSGHPGAAGGCRTPYRKQQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYI RGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQA QMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKC EAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTLTYDP TTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQVAKETREKKYRGPALKVQSPSWMQP QPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHM QTATVPVEEASGQQQVTVETSNDHSPYTFPPNK hide sequence

RefSeq Acc Id:	XP_006234303 ⟸ XM_006234241
- Peptide Label:	isoform X11
- UniProtKB:	A6HLT7 (UniProtKB/TrEMBL), A0A0G2K4R7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIFPSGSGHPGAAGGCRTPYRKQQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYI RGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQA QMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKC EAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTLTYDP TTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSM EHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTATVPVEEASGQQQV TVETSNDHSPYTFPPNK hide sequence

RefSeq Acc Id:	XP_017447382 ⟸ XM_017591893
- Peptide Label:	isoform X10
- UniProtKB:	A0A8L2Q545 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERRWLFQQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKL CQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYI SNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP PGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTLTYDPTTAALHNGFYPSPYS IATNRMITQTSLTPYIASPVSAYQVAKETREKKYRGPALKVQSPSWMQPQPYILQHPGAVLTPS MEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTATVPVEEASGQQQ VTVETSNDHSPYTFPPNK hide sequence

Ensembl Acc Id:

ENSRNOP00000011682 ⟸ ENSRNOT00000011682

Ensembl Acc Id:

ENSRNOP00000073145 ⟸ ENSRNOT00000087439

RefSeq Acc Id:	XP_038961321 ⟸ XM_039105393
- Peptide Label:	isoform X3
- UniProtKB:	A6HLT6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961325 ⟸ XM_039105397
- Peptide Label:	isoform X16
- UniProtKB:	A6HLT8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961322 ⟸ XM_039105394
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K4R7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961326 ⟸ XM_039105398
- Peptide Label:	isoform X17

Ensembl Acc Id:

ENSRNOP00000094484 ⟸ ENSRNOT00000101661

Ensembl Acc Id:

ENSRNOP00000078893 ⟸ ENSRNOT00000114670

Ensembl Acc Id:

ENSRNOP00000077414 ⟸ ENSRNOT00000112740

Ensembl Acc Id:

ENSRNOP00000082356 ⟸ ENSRNOT00000115982

Ensembl Acc Id:

ENSRNOP00000095266 ⟸ ENSRNOT00000099437

RefSeq Acc Id:	XP_063140185 ⟸ XM_063284115
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I5ZLN8 (UniProtKB/TrEMBL), A0A8I5Y9I4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140183 ⟸ XM_063284113
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5Y9I4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140184 ⟸ XM_063284114
- Peptide Label:	isoform X12
- UniProtKB:	A0A8L2Q545 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140186 ⟸ XM_063284116
- Peptide Label:	isoform X14
- UniProtKB:	A0A8L2Q545 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140187 ⟸ XM_063284117
- Peptide Label:	isoform X15
- UniProtKB:	A0A8I6AJP2 (UniProtKB/TrEMBL), A0A8L2Q545 (UniProtKB/TrEMBL)

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQP1-F1-model_v2	AlphaFold	Q5PQP1	1-403	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692093

Promoter ID:

EPDNEW_R2618

Type:

multiple initiation site

Name:

Rbms1_2

Description:

RNA binding motif, single stranded interacting protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2619

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	47,024,818 - 47,024,878	EPDNEW

RGD ID:

13692094

Promoter ID:

EPDNEW_R2619

Type:

initiation region

Name:

Rbms1_1

Description:

RNA binding motif, single stranded interacting protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2618

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	47,025,129 - 47,025,189	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307777	AgrOrtholog
BioCyc Gene	G2FUF-49613	BioCyc
Ensembl Genes	ENSRNOG00000008482	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000011682	ENTREZGENE
	ENSRNOT00000087439	ENTREZGENE
	ENSRNOT00000099437	ENTREZGENE
	ENSRNOT00000101661	ENTREZGENE
	ENSRNOT00000112740	ENTREZGENE
	ENSRNOT00000114670	ENTREZGENE
	ENSRNOT00000115982	ENTREZGENE
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7191334	IMAGE-MGC_LOAD
InterPro	Hud_Sxl_RNA	UniProtKB/Swiss-Prot
	MSSP1_RRM1	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:362138	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94632	IMAGE-MGC_LOAD
NCBI Gene	362138	ENTREZGENE
PANTHER	RNA BINDING PROTEIN	UniProtKB/Swiss-Prot
Pfam	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Rbms1	PhenoGen
PRINTS	HUDSXLRNA	UniProtKB/Swiss-Prot
PROSITE	RRM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000008482	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	A0A0G2K4R7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y9I4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZLN8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AJP2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B2A8_RAT	UniProtKB/TrEMBL
	A0A8I6G7B3_RAT	UniProtKB/TrEMBL
	A0A8L2Q545	ENTREZGENE, UniProtKB/TrEMBL
	A6HLT5	ENTREZGENE, UniProtKB/TrEMBL
	A6HLT6	ENTREZGENE, UniProtKB/TrEMBL
	A6HLT7	ENTREZGENE, UniProtKB/TrEMBL
	A6HLT8	ENTREZGENE, UniProtKB/TrEMBL
	Q5PQP1	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Rbms1	RNA binding motif, single stranded interacting protein 1	Rbms1_predicted	RNA binding motif, single stranded interacting protein 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Rbms1_predicted	RNA binding motif, single stranded interacting protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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