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Gene: Zc3h13 (zinc finger CCCH type containing 13) Rattus norvegicus

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Symbol:

Zc3h13

Name:

zinc finger CCCH type containing 13

RGD ID:

1307729

Description:

Predicted to enable zinc ion binding activity. Predicted to be involved in mRNA processing and regulation of stem cell population maintenance. Predicted to be located in nucleoplasm. Predicted to be part of RNA N6-methyladenosine methyltransferase complex. Predicted to be active in nuclear speck. Orthologous to human ZC3H13 (zinc finger CCCH-type containing 13); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-dichloroaniline; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC305955; RGD1307729; similar to KIAA0853 protein; zinc finger CCCH domain-containing protein 13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	57,016,686 - 57,081,201 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	57,016,781 - 57,081,201 (+)	Ensembl				GRCr8
mRatBN7.2	15	50,607,335 - 50,671,802 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	50,607,380 - 50,671,802 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	54,749,591 - 54,814,076 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	55,867,907 - 55,932,392 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	52,699,670 - 52,764,148 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	57,340,522 - 57,405,287 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	57,340,579 - 57,405,287 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	61,051,510 - 61,116,257 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	56,155,138 - 56,219,559 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	50,238,361 - 50,302,781 (+)	NCBI		Celera
RGSC_v3.1	15	56,174,788 - 56,240,891 (+)	NCBI
Cytogenetic Map	15	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

High Myopia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-dichloroaniline (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

Benoxacor (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

carmustine (ISO)

cefaloridine (EXP)

chloroprene (EXP)

chlorpyrifos (ISO)

cisplatin (ISO)

clofibrate (ISO)

coumarin (ISO)

diuron (EXP)

dorsomorphin (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

erythromycin estolate (EXP)

ethanol (EXP,ISO)

ferric oxide (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

methoxychlor (EXP)

nickel sulfate (ISO)

nitrates (ISO)

okadaic acid (ISO)

paracetamol (ISO)

pentanal (ISO)

phenethyl isothiocyanate (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

succimer (ISO)

sulindac (EXP)

temozolomide (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (ISO)

regulation of stem cell population maintenance (IEA,ISO)

Cellular Component

nuclear speck (IBA,IEA,ISO)

nucleoplasm (IEA,ISO)

RNA N6-methyladenosine methyltransferase complex (IEA,ISO)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:22681889	PMID:24100041	PMID:25002582	PMID:29507755	PMID:29547716

Genomics

Comparative Map Data

Zc3h13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	57,016,686 - 57,081,201 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	57,016,781 - 57,081,201 (+)	Ensembl				GRCr8
mRatBN7.2	15	50,607,335 - 50,671,802 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	50,607,380 - 50,671,802 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	54,749,591 - 54,814,076 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	55,867,907 - 55,932,392 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	52,699,670 - 52,764,148 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	57,340,522 - 57,405,287 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	57,340,579 - 57,405,287 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	61,051,510 - 61,116,257 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	56,155,138 - 56,219,559 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	50,238,361 - 50,302,781 (+)	NCBI		Celera
RGSC_v3.1	15	56,174,788 - 56,240,891 (+)	NCBI
Cytogenetic Map	15	q11	NCBI

ZC3H13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	45,954,465 - 46,052,746 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	45,954,364 - 46,052,781 (-)	Ensembl			hg38	GRCh38
GRCh37	13	46,528,600 - 46,626,881 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	45,434,315 - 45,524,895 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	13	45,434,314 - 45,524,895	NCBI
Celera	13	27,591,025 - 27,681,609 (-)	NCBI		Celera
Cytogenetic Map	13	q14.13	NCBI
HuRef	13	27,333,240 - 27,423,859 (-)	NCBI		HuRef
CHM1_1	13	46,505,477 - 46,596,033 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	45,175,847 - 45,274,136 (-)	NCBI		T2T-CHM13v2.0

Zc3h13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	75,521,746 - 75,581,873 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	75,521,813 - 75,581,866 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	75,284,306 - 75,344,433 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	75,284,373 - 75,344,426 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	75,684,180 - 75,744,233 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	74,018,528 - 74,078,581 (+)	NCBI		MGSCv36	mm8
Celera	14	72,786,372 - 72,846,301 (+)	NCBI		Celera
Cytogenetic Map	14	D3	NCBI
cM Map	14	39.8	NCBI

Zc3h13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955518	3,658,723 - 3,731,174 (-)	Ensembl
ChiLan1.0	NW_004955518	3,657,054 - 3,740,176 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZC3H13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	45,339,417 - 45,436,824 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	36,393,624 - 36,491,034 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	26,979,940 - 27,077,345 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ZC3H13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	5,127,094 - 5,219,456 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	5,133,249 - 5,217,908 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	5,113,628 - 5,206,281 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	5,242,468 - 5,334,971 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	5,242,489 - 5,333,535 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	5,024,540 - 5,117,144 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	5,088,004 - 5,180,629 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	5,092,969 - 5,185,595 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zc3h13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	156,072,701 - 156,154,729 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936857	496,344 - 568,250 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936857	495,904 - 576,984 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZC3H13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	21,298,855 - 21,387,968 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	11	21,298,855 - 21,387,557 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	21,758,282 - 21,840,038 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZC3H13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	24,013,592 - 24,109,227 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	24,014,794 - 24,101,969 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666057	19,907,661 - 20,003,619 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zc3h13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	8,937,527 - 9,010,977 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624748	8,928,475 - 9,013,430 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zc3h13
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	49,042,645 - 49,110,374 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zc3h13
434 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	96
Count of miRNA genes:	72
Interacting mature miRNAs:	89
Transcripts:	ENSRNOT00000015467
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	44806773	104695021	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	31855803	92671517	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	43677244	88677244	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28527732	73527732	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	40463152	85463152	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	43677244	88677244	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	43677244	88677244	Rat

Markers in Region

RH139464

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	50,671,379 - 50,671,573 (+)	MAPPER	mRatBN7.2
mRatBN7.2	15	37,033,392 - 37,033,586 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	57,404,865 - 57,405,058	NCBI	Rnor6.0
Rnor_6.0	15	45,958,895 - 45,959,088	NCBI	Rnor6.0
Rnor_5.0	15	61,115,835 - 61,116,028	UniSTS	Rnor5.0
Rnor_5.0	15	49,724,925 - 49,725,118	UniSTS	Rnor5.0
RGSC_v3.4	15	42,042,732 - 42,042,925	UniSTS	RGSC3.4
RGSC_v3.4	15	56,219,137 - 56,219,330	UniSTS	RGSC3.4
Celera	15	50,302,359 - 50,302,552	UniSTS
Celera	15	36,719,511 - 36,719,704	UniSTS
Cytogenetic Map	15	q11	UniSTS

RH143412

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	50,607,450 - 50,607,651 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	57,340,650 - 57,340,850	NCBI	Rnor6.0
Rnor_5.0	15	61,051,620 - 61,051,820	UniSTS	Rnor5.0
RGSC_v3.4	15	56,155,209 - 56,155,409	UniSTS	RGSC3.4
Celera	15	50,238,432 - 50,238,632	UniSTS
Cytogenetic Map	15	q11	UniSTS

RH136779

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	37,033,392 - 37,033,491 (+)	MAPPER	mRatBN7.2
mRatBN7.2	15	50,671,379 - 50,671,478 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	57,404,865 - 57,404,963	NCBI	Rnor6.0
Rnor_6.0	15	45,958,895 - 45,958,993	NCBI	Rnor6.0
Rnor_5.0	15	61,115,835 - 61,115,933	UniSTS	Rnor5.0
Rnor_5.0	15	49,724,925 - 49,725,023	UniSTS	Rnor5.0
RGSC_v3.4	15	42,042,732 - 42,042,830	UniSTS	RGSC3.4
RGSC_v3.4	15	56,219,137 - 56,219,235	UniSTS	RGSC3.4
Celera	15	50,302,359 - 50,302,457	UniSTS
Celera	15	36,719,511 - 36,719,609	UniSTS
Cytogenetic Map	15	q11	UniSTS

AU049533

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	50,640,009 - 50,640,188 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	57,373,495 - 57,373,673	NCBI	Rnor6.0
Rnor_5.0	15	61,084,465 - 61,084,643	UniSTS	Rnor5.0
RGSC_v3.4	15	56,187,767 - 56,187,945	UniSTS	RGSC3.4
Celera	15	50,270,989 - 50,271,167	UniSTS
Cytogenetic Map	15	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001170471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015467 ⟹ ENSRNOP00000015467

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	57,016,781 - 57,081,201 (+)	Ensembl
mRatBN7.2 Ensembl	15	50,607,380 - 50,671,802 (+)	Ensembl
Rnor_6.0 Ensembl	15	57,340,579 - 57,405,287 (+)	Ensembl

RefSeq Acc Id:

NM_001170471 ⟹ NP_001163942

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,016,781 - 57,081,201 (+)	NCBI
mRatBN7.2	15	50,607,380 - 50,671,802 (+)	NCBI
Rnor_6.0	15	57,340,579 - 57,405,287 (+)	NCBI
Rnor_5.0	15	61,051,510 - 61,116,257 (+)	NCBI
RGSC_v3.4	15	56,155,138 - 56,219,559 (+)	RGD
Celera	15	50,238,361 - 50,302,781 (+)	RGD

Sequence:

show sequence

CTTTTAGATGCTTCCTATGTAGAGGCCCGATGGAGTTGCGGGTTTAGCGCGTTGCTCTGCAGCG
GCCTCTGTACGTCTCATCTGGTGTCCGGAGCTCCCTGGAGCTTGGCGAAGATCTGGGCGGCTCC
GCTGCTCTCTGTTCCCGGCGTCCGCCCGGTTGAGGAGAGCGGGCCCCTGGGAGTCGCGCGTGCA
CGTCTTCTCCGTCGTCCTCCCGGGGCGGGGCGCGGGGACAGCGGAGCTGAGGCGTCCGGGACAT
CCTGAAGACTGCGCTTACTAAGGGTGCTTAGAGAGGAGTAGTTCAAAATGTCAAAAATTAGGAG
GAAGGTCACAGTGGAAAACACCAAGACCATATCTGAAAGCACATCCCGAAGACCTAGTGTGTTT
GAGAGGCTTGGACCCAGCACTGGAAGCACAACAGAGACACAGTGCCGTAACTGGCTGAAGACCG
GCAGCTGCCTCTATGGAAACACATGTAGGTTCATACATGGCCCTTCACCTCGTGGGAAAGGTTA
CAGCAGCAATTACAGAAGGTCACCGGAAAGGCCTACAGGTGATCTCAGAGAAAGAATGAAGAAT
AAGCGTCAGGATGTGGATTCTGAATCCCAGAAACGGAACACAGAGGAGTCATCCTCACCTGTTA
GGAAAGAATCTTCAAGAGGGAGACATAGAGACAAGGAAGACATAAAAATTGTTAAAGAGAGAAC
TCCAGAAAGCGAAGAAGAAAACGTAGAATGGGAAACCAACAGAGATGATTCTGACAATGGAGAT
ATTAATTACGATTATGTTCATGAGTTATCATTGGAAATGAAGCGTCAGAAAATACAGAGAGAAT
TAATGAAGTTGGAACAAGAAAACATGGATAAAAGAGAAGAAATTATTATTCAAAAGGAGGTTTC
CCCAGAAGTGGTGAGATCAAAGTTGTCTCCATCACCTCTGAGAAAGTCGAGTAAATCTCCAAAG
CGGAAGTCCAGCCCCAAGGCATCTTCAGCTGGCAAGAAAGAGCGGAAGGCTGCTGTGGTGGCTT
CCCCGCTGCTGGACCAGCAGAGAAATTCAAAAAGCAACCAAAGTAAAAAGAAAGGGCCACGCAC
TCCTAGTCCACCTCCTCCTATACTAGAAGATATCATTCTGGGAAAAAAATACAAAGAAAAGTAT
AAAGTGAAAGACAAGATAGAAGAAAAACCAAGAGATGGAAAGGACAGAGGACGGGATTTTGAAA
GGCAAAGAGAAAAACGAGACAAACCAAGGTCTTCCTCCCCGGGACAGCACCATTCTCCTCTGTC
TTCTAGACATCACTCGTCGTCCTCACAGTCAGGGTCATCTATTCAGAGACATTCTCCCTCTCCT
CGCCGGAAAAGAACTCCTTCCCCATCCTACCAGAGGACTTTAACTCCATCTTTACGACGTTCTG
CATCTCCTTATCCAACCCATTGTCTGTCTTCTCCTCAGAGAAAGCAAAGTCCTCCAAGACATCG
CTCTCCAATGAGAGAGAAAGGGAGGCATGATCATGAACGGACTTCACAGTCACATGATCGGCGT
CATGAAAGGAGGGAAGAAGCTCGAGGCAAAAGGGATAGAGAAAAGGACACCAGAGAAGAGCGAG
AGTCTGAACATGACCACAGGGATGACAGAGAACCGCGAGACAGTCGGGACCGGAGAGACACTAG
AGACCGCAGGGAACTTAGAGACTCCAGAGACATGCGGGACTCCAGAGAGATAAGGGATTATAGC
AGAGACACCAAGGAGAGCCGTGATCCCAGAGATTCCCGGTCAGCTCGGGATGTCCATGACTACA
GGGACCGTGAAGCTCGGGATGCTCATGCTCGAGATGTTCGGGATGTCAGGGATGCTCGAGATGC
TCGAGATGTTCGGGATGTCCGGGATGTCAGGGATGCTCGAGATGTCCGGGATGTTCGGGATGCT
CGAGATGTCCGGGATGCCCGGGATGTCCGGGATGTTCGGGATGTCCGGGATGTCCGGGACACCA
GAGATGCCCGGGATGCCCGGGATGCTCGAGATGGTCATCGAAAGGAGGATGTATACCAGGAAGA
AGCCCGTAGTTATGGCAGAAACCACCTGAGAGAAGAGAGTTCTAGAGTTGAACTAAGGAATGAC
TCTAGAAATGAGTCTCGAAGTGAAATTAGAAATGACCGCATGGGCAGAAGTAGGGGGAGAGGTC
CAGAACTGCCTGAAAAGGGAGGTCGAAGCACAAGAGGTTCCCAAATGGATAGCCACAGTAGTGG
CAGCAACTACCATGACAGCTGGGAAACTCGAAGTAGCTATCCTGAAAGAGACAGATACCCTGAG
AGAGATACCAGAGATCAAGCAAGGGATTCTTCCTTTGAGAGAAGGCATGGAGAAAGAGACCGTC
GGGATAACAGAGAACGAGATCAAAGACCAAGCTCACCTATTCGCCATCAGGGGAGGAGTGAGGA
GCTTGAGCGAGAGGAAAGAAGAGAGGAAAGACGAATAGACAGAGTGGATGAGAGACGAGATGAA
AGGGTCAGAGACAGAGATAGGGAGAGAGAGAGAGAGCGGGAGAGGGAGAGAGATCGGGAACGGG
AGCGGGAGCGGGAAAAGGAAAGAGAAAGAGAACTAGAAAGAGAGAGAGCTAGAGAGCGGGAGAG
AGAGAGAGAGAAAGAGAGGGAGAGAGAGCGAGAAAGAGAAAGAGATCAGAGAGATCGTGACCAT
GATCGAGAGCGAGAAAGAGAGAGGGAGCGAGAGAGGGAAAAAGAACGGGAGCGAGAAGAGAGAG
AGAGGGAGAGAGAAAGGGAAAGGGAACGGGAAAGAGAAAGGGAACGGGAGCGGGAGAGAGAGCG
AGAACGTGAGCGGGAGCGAGAAAGGGCCAGAGAAAGAGAAAAAGAACGAGAGCGGCAAAGAGAA
TGGGAGGATAAAGACAAGGGACGCGATGACCGGAGGGAGAAGCGCGAGGACGTTCATGTTCGAG
AGGACAGGATCCCCAGAGACGGCCACGAGGAGAGAAAGTCCAAGAAACGCTATAGAAATGAAGG
GAGTCCCAGCCCCCGGCAGTCCCCCAAGCGCCGGCGGGAGCATTCTCCTGACAGTGACACCTAC
CACAGTGGGGATGACAAAAATGAAAAGCATAGACTCTTGAGCCAGGTCGTACGGCCACAGGAAT
CTCGTTCTCTCAGCCCGTCCCACCTCACAGAAGACAGGCAGGGTAGATGGAAAGAGGAGGAGCG
TAAATCGGAAAGGAAGGAGAGTTCAAGGCGCTATGAAGAACAAGAACTCAAAGAGAAGCTTTCT
TGTGGCGACAGGCAAAGGGAGCAGACAGAAAGCGTGGACGGCGGCTCGAGAGCGCGCAGCGCGC
AAGACCTGCTCAGCCATCGCCAGGCTGAAGACCGCGACCGAGATGGGTCTGATCGAGCCCATGA
TGAAAAGAAAAAAGCAAAAGCTCCGAAGAAACCCGTAAAGAAAAAGAGGGAGGAGGATGTTGGA
ATAGAGAGGGGCAACCCTGAGACACACGAGGATAGTCAAGTGTTTTCACCAAAAAAAGGACAGA
AAAAGAAAAACATTGAAAAAAAGCGTAAAAGATCCAAGGGGGATTCTGATGTTTCTGACGAAGA
GGCAGCCCCGCAGAGTAAGAAGAAGAGGGGTCCACGCACACCCCCTCTTGCCATCAAGGAGGAG
CTGATTGAGATTTCCACTGACAAGGAAGGCATCCTTGAGGATCCCCTGAAGAAAGAAGATACCG
CCTTTAGTGACTGGTCTGATGAGGATGTGCCTGACCGCACAGACGGCTTGGAAGCTGAGCACAC
TGCAGCCGCGGCCACTCCCGGGAGCACCCCTTCCCCCATGTCGTCTCTTCTCCCTCCCCCGCCC
CCTGTGGCTGCTGCCGGTACTGCAGCCACTGCTCTTGCCGCCTCAGCCATTTCTGCCACCACCT
CTACCACCATTTCAAGCTCTGGTGCCACCTCCAATATCAATGCCAGTGAAGACTCACACAGAAA
ATGCCACAGGGCACGAGGGGAGAAGGTAGAGGTGTCTCATGTGACCCTGGAAGATACACCACAT
CGCAAACTGGTGGATCAAAAGAGAAGCAGCAGCCTGGGAAGCAATCGGAGTCACCGCAGCCATA
CCTCTGGTCGCCTGCGCTCCCCATCTAATGATTCTGCACATCGAAGTGGGGACGATCAGGGTGG
TCGGAAGAGAGTGCTCCACAGTGGCTCCAGAGATAGAGAAAAGACAAAGAGCCTAGAGCTCACA
GGAGAGAGAAAATCTAGGATCGATCAGTTAAAGCGTGGAGAGCCCAGTCGGAGTACTTCTTCAG
ATCGCCAGGATTCCAGAAGCCACAGCTCCAGAAGAAGCTCTCCTGAGTCAGACCGACAGGTTCA
CTCCAGGTCTGGGTCATTTGACAGCAGAGACCGGCTTCAAGAACGAGATAGGTATGAGCATGAC
AGAGAGCGTGAGAGGGAGCGGAGAGATCCCAGACAAAGGGAGTGGGACCGGGAAGCAGACAAAG
AGTGGCCTCGGACCCGAGACCGTGATAGACTTCGGGAACGCGAGAGAGACCGAGACAAAAGGAG
AGACTTGGACAGAGAGAGAGAGAGACTGGTCGCCGACCCCATGGAAAGAGACAGAGAACGAGAT
AGAACTTTTGAGACGTCTCAGTTGGAATCTGTGAAGCGAAGTGAAGTCAAATTGGAGAGTGAAC
ACGACAGAGACCTGGAGGGCAGCTCCCGGGACTCTGTGGCCTTGGACAAAGAAAGGATGGACAG
AGACCTGGGGTCTGCGCAGGGGTTTGAGGATGTGAGTAAAGCGGAGAGAACAGAGAGTCTGGAA
GCAGGAGATGACGAGTCCAAGTTAGATGATGCGCATTCGTTAGGGTCTGGTGCTGGGGAAGGCT
ATGAGCCCATCAGTGACGACGAGCTAGATGAAATTCTGGCAGGGGATGCAGAAAAGAGAGAGGA
CCAGCAGGAAGAGGAGAAGATGCCAGATCCATTAGATGTGATAGATGTGGACTGGTCTGGACTA
ATGCCAAAGCATCGGAAAGAGCCGAGAGAGCCCGGGGCTGCACTCTTAAAGTTCACACCCGGAG
CCGTGCTACTACGAGTTGGGATTTCTAAAAAGTTGGCCGGTTCTGAGCTCTTTACAAAAGTTAA
AGAAACATGTCAACAACTTCTAGAGAAACCCAAAGATGCAGACAGCCTTTTTGAACATGAACTA
GGGGCTCTCAACATGGCTGCTTTACTTCGAAAAGAAGAGCGGGCGAGTCTCCTTAGTGACCTGG
GACCATGTTGTAAAGCATTATGTTTCAGACGGGATTCTGCAATCCGGAAGCAGCTTGTGAAGAA
CGAAAAGGGAACCGTGAAGCAGGCGTACACCAACACTCCGATGGTGGACAACGAGCTGCTTCGG
CTGAGTCTTCGGTTACTCAAGAGGAAGACTTCCTGCCACACCCCTGGGCAGGAAAAGACTGAAG
ATGGGAAATTAGCCCCGTGCAGTGGCCAGCAGGAGCTGTGTGTGTCCTAGGCAGAGATTGAGGA
CGGCCCGTTTGCTCTCTCTTCACAGGAGTGCATAATCTTTCTCAAAGTTTTTTGTTTTGAGACA
TTGCTAATTACAGAGACAGAAGAGTCACCGGCCACATCAGATGTGAAGAACTTCAGTCTTCAGA
GACACCAGTTTTGGTTCATTTAAGATTTTACATTAATTTTTATACAGTAATTGACACTCAGGCA
AAATAATGTGAAAATGTCTAGATTTAGTAATTTCGTCTGTGTCTTCATTAAAATTGAAGATTTT
AAGTAACCAGGTCACCCCTGCTCTTCCAGCCTATGAATACTTCCTATGAAATAAAAGCACTGAT
TTTTATTCTGGATCACCACGCAGAACTGACCGTAGTCAGAAAGGTGTGTCGCTAGAGGCTGCTG
CACAGGCTGCAGTGCCGTGTACAGAGCTCTGAGGTGCGCCGGCCTTGCGAGTGCGCCCGGAGGC
AGTCTTCACAAGGAAACCCCAGTGGGTTTGCTTTTTTCTTTTGAAAATTCTAAAATAAATGACT
CCATGGGATTTTTTTTTACACATGTACATTGCTACATTATATATTGGAAGTCTTTGGACTTTTG
AGTGGGGTTTAATTGTTCATTATCAGAGACTGTGTGCTATTTTATTTTTAATAAATGTACGTTC
CCTTTTCTTGTTGTAGATTTTCCTTGCTCTTTATTAATCAGACTCCAGACACTGA

hide sequence

RefSeq Acc Id:

XM_006252316 ⟹ XP_006252378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,016,732 - 57,081,161 (+)	NCBI
mRatBN7.2	15	50,607,336 - 50,671,762 (+)	NCBI
Rnor_6.0	15	57,340,523 - 57,405,247 (+)	NCBI
Rnor_5.0	15	61,051,510 - 61,116,257 (+)	NCBI

Sequence:

show sequence

CGGCCGGAAGCTGCCTGGCTTGCGAAGGAGTAGGGCAAACTCGTGACTTCCGTCGGCTTTTAGA
TGCTTCCTATGTAGAGGCCCGATGGAGTTGCGGGTTTAGCGCGTTGCTCTGCAGCGGCCTCTGT
ACGTCTCATCTGGTGTCCGGAGCTCCCTGGAGCTTGGCGAAGATCTGGGCGGCTCCGCTGCTCT
CTGTTCCCGGCGTCCGCCCGGTTGAGGAGAGCGGGCCCCTGGGAGTCGCGCGTGCACGTCTTCT
CCGTCGTCCTCCCGGGGCGGGGCGCGGGGACAGCGGAGCTGAGGCGTCCGGGACATCCTGAAGA
CTGCGCTTACTAAGGGTGCTTAGAGAGGAGTTCAAAATGTCAAAAATTAGGAGGAAGGTCACAG
TGGAAAACACCAAGACCATATCTGAAAGCACATCCCGAAGACCTAGTGTGTTTGAGAGGCTTGG
ACCCAGCACTGGAAGCACAACAGAGACACAGTGCCGTAACTGGCTGAAGACCGGCAGCTGCCTC
TATGGAAACACATGTAGGTTCATACATGGCCCTTCACCTCGTGGGAAAGGTTACAGCAGCAATT
ACAGAAGGTCACCGGAAAGGCCTACAGGTGATCTCAGAGAAAGAATGAAGAATAAGCGTCAGGA
TGTGGATTCTGAATCCCAGAAACGGAACACAGAGGAGTCATCCTCACCTGTTAGGAAAGAATCT
TCAAGAGGGAGACATAGAGACAAGGAAGACATAAAAATTGTTAAAGAGAGAACTCCAGAAAGCG
AAGAAGAAAACGTAGAATGGGAAACCAACAGAGATGATTCTGACAATGGAGATATTAATTACGA
TTATGTTCATGAGTTATCATTGGAAATGAAGCGTCAGAAAATACAGAGAGAATTAATGAAGTTG
GAACAAGAAAACATGGATAAAAGAGAAGAAATTATTATTCAAAAGGAGGTTTCCCCAGAAGTGG
TGAGATCAAAGTTGTCTCCATCACCTCTGAGAAAGTCGAGTAAATCTCCAAAGCGGAAGTCCAG
CCCCAAGGCATCTTCAGCTGGCAAGAAAGAGCGGAAGGCTGCTGTGGTGGCTTCCCCGCTGCTG
GACCAGCAGAGAAATTCAAAAAGCAACCAAAGTAAAAAGAAAGGGCCACGCACTCCTAGTCCAC
CTCCTCCTATACTAGAAGATATCATTCTGGGAAAAAAATACAAAGAAAAGTATAAAGTGAAAGA
CAAGATAGAAGAAAAACCAAGAGATGGAAAGGACAGAGGACGGGATTTTGAAAGGCAAAGAGAA
AAACGAGACAAACCAAGGTCTTCCTCCCCGGGACAGCACCATTCTCCTCTGTCTTCTAGACATC
ACTCGTCGTCCTCACAGTCAGGGTCATCTATTCAGAGACATTCTCCCTCTCCTCGCCGGAAAAG
AACTCCTTCCCCATCCTACCAGAGGACTTTAACTCCATCTTTACGACGTTCTGCATCTCCTTAT
CCAACCCATTGTCTGTCTTCTCCTCAGAGAAAGCAAAGTCCTCCAAGACATCGCTCTCCAATGA
GAGAGAAAGGGAGGCATGATCATGAACGGACTTCACAGTCACATGATCGGCGTCATGAAAGGAG
GGAAGAAGCTCGAGGCAAAAGGGATAGAGAAAAGGACACCAGAGAAGAGCGAGAGTCTGAACAT
GACCACAGGGATGACAGAGAACCGCGAGACAGTCGGGACCGGAGAGACACTAGAGACCGCAGGG
AACTTAGAGACTCCAGAGACATGCGGGACTCCAGAGAGATAAGGGATTATAGCAGAGACACCAA
GGAGAGCCGTGATCCCAGAGATTCCCGGTCAGCTCGGGATGTCCATGACTACAGGGACCGTGAA
GCTCGGGATGCTCATGCTCGAGATGTTCGGGATGTCAGGGATGCTCGAGATGCTCGAGATGTTC
GGGATGTCCGGGATGTCAGGGATGCTCGAGATGTCCGGGATGTTCGGGATGCTCGAGATGTCCG
GGATGCCCGGGATGTCCGGGATGTTCGGGATGTCCGGGATGTCCGGGACACCAGAGATGCCCGG
GATGCCCGGGATGCTCGAGATGGTCATCGAAAGGAGGATGTATACCAGGAAGAAGCCCGTAGTT
ATGGCAGAAACCACCTGAGAGAAGAGAGTTCTAGAGTTGAACTAAGGAATGACTCTAGAAATGA
GTCTCGAAGTGAAATTAGAAATGACCGCATGGGCAGAAGTAGGGGGAGAGGTCCAGAACTGCCT
GAAAAGGGAGGTCGAAGCACAAGAGGTTCCCAAATGGATAGCCACAGTAGTGGCAGCAACTACC
ATGACAGCTGGGAAACTCGAAGTAGCTATCCTGAAAGAGACAGATACCCTGAGAGAGATACCAG
AGATCAAGCAAGGGATTCTTCCTTTGAGAGAAGGCATGGAGAAAGAGACCGTCGGGATAACAGA
GAACGAGATCAAAGACCAAGCTCACCTATTCGCCATCAGGGGAGGAGTGAGGAGCTTGAGCGAG
AGGAAAGAAGAGAGGAAAGACGAATAGACAGAGTGGATGAGAGACGAGATGAAAGGGTCAGAGA
CAGAGATAGGGAGAGAGAGAGAGAGCGGGAGAGGGAGAGAGATCGGGAACGGGAGCGGGAGCGG
GAAAAGGAAAGAGAAAGAGAACTAGAAAGAGAGAGAGCTAGAGAGCGGGAGAGAGAGAGAGAGA
AAGAGAGGGAGAGAGAGCGAGAAAGAGAAAGAGATCAGAGAGATCGTGACCATGATCGAGAGCG
AGAAAGAGAGAGGGAGCGAGAGAGGGAAAAAGAACGGGAGCGAGAAGAGAGAGAGAGGGAGAGA
GAAAGGGAAAGGGAACGGGAAAGAGAAAGGGAACGGGAGCGGGAGAGAGAGCGAGAACGTGAGC
GGGAGCGAGAAAGGGCCAGAGAAAGAGAAAAAGAACGAGAGCGGCAAAGAGAATGGGAGGATAA
AGACAAGGGACGCGATGACCGGAGGGAGAAGCGCGAGGACGTTCATGTTCGAGAGGACAGGATC
CCCAGAGACGGCCACGAGGAGAGAAAGTCCAAGAAACGCTATAGAAATGAAGGGAGTCCCAGCC
CCCGGCAGTCCCCCAAGCGCCGGCGGGAGCATTCTCCTGACAGTGACACCTACCACAGTGGGGA
TGACAAAAATGAAAAGCATAGACTCTTGAGCCAGGTCGTACGGCCACAGGAATCTCGTTCTCTC
AGCCCGTCCCACCTCACAGAAGACAGGCAGGGTAGATGGAAAGAGGAGGAGCGTAAATCGGAAA
GGAAGGAGAGTTCAAGGCGCTATGAAGAACAAGAACTCAAAGAGAAGCTTTCTTGTGGCGACAG
GCAAAGGGAGCAGACAGAAAGCGTGGACGGCGGCTCGAGAGCGCGCAGCGCGCAAGACCTGCTC
AGCCATCGCCAGGCTGAAGACCGCGACCGAGATGGGTCTGATCGAGCCCATGATGAAAAGAAAA
AAGCAAAAGCTCCGAAGAAACCCGTAAAGAAAAAGAGGGAGGAGGATGTTGGAATAGAGAGGGG
CAACCCTGAGACACACGAGGATAGTCAAGTGTTTTCACCAAAAAAAGGACAGAAAAAGAAAAAC
ATTGAAAAAAAGCGTAAAAGATCCAAGGGGGATTCTGATGTTTCTGACGAAGAGGCAGCCCCGC
AGAGTAAGAAGAAGAGGGGTCCACGCACACCCCCTCTTGCCATCAAGGAGGAGCTGATTGAGAT
TTCCACTGACAAGGAAGGCATCCTTGAGGATCCCCTGAAGAAAGAAGATACCGCCTTTAGTGAC
TGGTCTGATGAGGATGTGCCTGACCGCACAGACGGCTTGGAAGCTGAGCACACTGCAGCCGCGG
CCACTCCCGGGAGCACCCCTTCCCCCATGTCGTCTCTTCTCCCTCCCCCGCCCCCTGTGGCTGC
TGCCGGTACTGCAGCCACTGCTCTTGCCGCCTCAGCCATTTCTGCCACCACCTCTACCACCATT
TCAAGCTCTGGTGCCACCTCCAATATCAATGCCAGTGAAGACTCACACAGAAAATGCCACAGGG
CACGAGGGGAGAAGGTAGAGGTGTCTCATGTGACCCTGGAAGATACACCACATCGCAAACTGGT
GGATCAAAAGAGAAGCAGCAGCCTGGGAAGCAATCGGAGTCACCGCAGCCATACCTCTGGTCGC
CTGCGCTCCCCATCTAATGATTCTGCACATCGAAGTGGGGACGATCAGGGTGGTCGGAAGAGAG
TGCTCCACAGTGGCTCCAGAGATAGAGAAAAGACAAAGAGCCTAGAGCTCACAGGAGAGAGAAA
ATCTAGGATCGATCAGTTAAAGCGTGGAGAGCCCAGTCGGAGTACTTCTTCAGATCGCCAGGAT
TCCAGAAGCCACAGCTCCAGAAGAAGCTCTCCTGAGTCAGACCGACAGGTTCACTCCAGGTCTG
GGTCATTTGACAGCAGAGACCGGCTTCAAGAACGAGATAGGTATGAGCATGACAGAGAGCGTGA
GAGGGAGCGGAGAGATCCCAGACAAAGGGAGTGGGACCGGGAAGCAGACAAAGAGTGGCCTCGG
ACCCGAGACCGTGATAGACTTCGGGAACGCGAGAGAGACCGAGACAAAAGGAGAGACTTGGACA
GAGAGAGAGAGAGACTGGTCGCCGACCCCATGGAAAGAGACAGAGAACGAGATAGAACTTTTGA
GACGTCTCAGTTGGAATCTGTGAAGCGAAGTGAAGTCAAATTGGAGAGTGAACACGACAGAGAC
CTGGAGGGCAGCTCCCGGGACTCTGTGGCCTTGGACAAAGAAAGGATGGACAGAGACCTGGGGT
CTGCGCAGGGGTTTGAGGATGTGAGTAAAGCGGAGAGAACAGAGAGTCTGGAAGCAGGAGATGA
CGAGTCCAAGTTAGATGATGCGCATTCGTTAGGGTCTGGTGCTGGGGAAGGCTATGAGCCCATC
AGTGACGACGAGCTAGATGAAATTCTGGCAGGGGATGCAGAAAAGAGAGAGGACCAGCAGGAAG
AGGAGAAGATGCCAGATCCATTAGATGTGATAGATGTGGACTGGTCTGGACTAATGCCAAAGCA
TCGGAAAGAGCCGAGAGAGCCCGGGGCTGCACTCTTAAAGTTCACACCCGGAGCCGTGCTACTA
CGAGTTGGGATTTCTAAAAAGTTGGCCGGTTCTGAGCTCTTTACAAAAGTTAAAGAAACATGTC
AACAACTTCTAGAGAAACCCAAAGATGCAGACAGCCTTTTTGAACATGAACTAGGGGCTCTCAA
CATGGCTGCTTTACTTCGAAAAGAAGAGCGGGCGAGTCTCCTTAGTGACCTGGGACCATGTTGT
AAAGCATTATGTTTCAGACGGGATTCTGCAATCCGGAAGCAGCTTGTGAAGAACGAAAAGGGAA
CCGTGAAGCAGGCGTACACCAACACTCCGATGGTGGACAACGAGCTGCTTCGGCTGAGTCTTCG
GTTACTCAAGAGGAAGACTTCCTGCCACACCCCTGGGCAGGAAAAGACTGAAGATGGGAAATTA
GCCCCGTGCAGTGGCCAGCAGGAGCTGTGTGTGTCCTAGGCAGAGATTGAGGACGGCCCGTTTG
CTCTCTCTTCACAGGAGTGCATAATCTTTCTCAAAGTTTTTTGTTTTGAGACATTGCTAATTAC
AGAGACAGAAGAGTCACCGGCCACATCAGATGTGAAGAACTTCAGTCTTCAGAGACACCAGTTT
TGGTTCATTTAAGATTTTACATTAATTTTTATACAGTAATTGACACTCAGGCAAAATAATGTGA
AAATGTCTAGATTTAGTAATTTCGTCTGTGTCTTCATTAAAATTGAAGATTTTAAGTAACCAGG
TCACCCCTGCTCTTCCAGCCTATGAATACTTCCTATGAAATAAAAGCACTGATTTTTATTCTGG
ATCACCACGCAGAACTGACCGTAGTCAGAAAGGTGTGTCGCTAGAGGCTGCTGCACAGGCTGCA
GTGCCGTGTACAGAGCTCTGAGGTGCGCCGGCCTTGCGAGTGCGCCCGGAGGCAGTCTTCACAA
GGAAACCCCAGTGGGTTTGCTTTTTTCTTTTGAAAATTCTAAAATAAATGACTCCATGGGATTT
TTTTTTACACATGTACATTGCTACATTATATATTGGAAGTCTTTGGACTTTTGAGTGGGGTTTA
ATTGTTCATTATCAGAGACTGTGTGCTATTTTATTTTTAATAAATGTACGTTCCCTTTTCTTGT
TGTA

hide sequence

RefSeq Acc Id:

XM_017599690 ⟹ XP_017455179

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,016,732 - 57,081,161 (+)	NCBI
mRatBN7.2	15	50,607,336 - 50,671,762 (+)	NCBI
Rnor_6.0	15	57,340,522 - 57,405,247 (+)	NCBI

Sequence:

show sequence

GCGGCCGGAAGCTGCCTGGCTTGCGAAGGAGTAGGGCAAACTCGTGACTTCCGTCGGCTTTTAG
ATGCTTCCTATGTAGAGGCCCGATGGAGTTGCGGGTTTAGCGCGTTGCTCTGCAGCGGCCTCTG
TACGTCTCATCTGGTGTCCGGAGCTCCCTGGAGCTTGGCGAAGATCTGGGCGGCTCCGCTGCTC
TCTGTTCCCGGCGTCCGCCCGGTTGAGGAGAGCGGGCCCCTGGGAGTCGCGCGTGCACGTCTTC
TCCGTCGTCCTCCCGGGGCGGGGCGCGGGGACAGCGGAGCTGAGGCGTCCGGGACATCCTGAAG
ACTGCGCTTACTAAGGGTGCTTAGAGAGGAGAAAGAATCTTCAAGAGGGAGACATAGAGACAAG
GAAGACATAAAAATTGTTAAAGAGAGAACTCCAGAAAGCGAAGAAGAAAACGTAGAATGGGAAA
CCAACAGAGATGATTCTGACAATGGAGATATTAATTACGATTATGTTCATGAGTTATCATTGGA
AATGAAGCGTCAGAAAATACAGAGAGAATTAATGAAGTTGGAACAAGAAAACATGGATAAAAGA
GAAGAAATTATTATTCAAAAGGAGGTTTCCCCAGAAGTGGTGAGATCAAAGTTGTCTCCATCAC
CTCTGAGAAAGTCGAGTAAATCTCCAAAGCGGAAGTCCAGCCCCAAGGCATCTTCAGCTGGCAA
GAAAGAGCGGAAGGCTGCTGTGGTGGCTTCCCCGCTGCTGGACCAGCAGAGAAATTCAAAAAGC
AACCAAAGTAAAAAGAAAGGGCCACGCACTCCTAGTCCACCTCCTCCTATACTAGAAGATATCA
TTCTGGGAAAAAAATACAAAGAAAAGTATAAAGTGAAAGACAAGATAGAAGAAAAACCAAGAGA
TGGAAAGGACAGAGGACGGGATTTTGAAAGGCAAAGAGAAAAACGAGACAAACCAAGGTCTTCC
TCCCCGGGACAGCACCATTCTCCTCTGTCTTCTAGACATCACTCGTCGTCCTCACAGTCAGGGT
CATCTATTCAGAGACATTCTCCCTCTCCTCGCCGGAAAAGAACTCCTTCCCCATCCTACCAGAG
GACTTTAACTCCATCTTTACGACGTTCTGCATCTCCTTATCCAACCCATTGTCTGTCTTCTCCT
CAGAGAAAGCAAAGTCCTCCAAGACATCGCTCTCCAATGAGAGAGAAAGGGAGGCATGATCATG
AACGGACTTCACAGTCACATGATCGGCGTCATGAAAGGAGGGAAGAAGCTCGAGGCAAAAGGGA
TAGAGAAAAGGACACCAGAGAAGAGCGAGAGTCTGAACATGACCACAGGGATGACAGAGAACCG
CGAGACAGTCGGGACCGGAGAGACACTAGAGACCGCAGGGAACTTAGAGACTCCAGAGACATGC
GGGACTCCAGAGAGATAAGGGATTATAGCAGAGACACCAAGGAGAGCCGTGATCCCAGAGATTC
CCGGTCAGCTCGGGATGTCCATGACTACAGGGACCGTGAAGCTCGGGATGCTCATGCTCGAGAT
GTTCGGGATGTCAGGGATGCTCGAGATGCTCGAGATGTTCGGGATGTCCGGGATGTCAGGGATG
CTCGAGATGTCCGGGATGTTCGGGATGCTCGAGATGTCCGGGATGCCCGGGATGTCCGGGATGT
TCGGGATGTCCGGGATGTCCGGGACACCAGAGATGCCCGGGATGCCCGGGATGCTCGAGATGGT
CATCGAAAGGAGGATGTATACCAGGAAGAAGCCCGTAGTTATGGCAGAAACCACCTGAGAGAAG
AGAGTTCTAGAGTTGAACTAAGGAATGACTCTAGAAATGAGTCTCGAAGTGAAATTAGAAATGA
CCGCATGGGCAGAAGTAGGGGGAGAGGTCCAGAACTGCCTGAAAAGGGAGGTCGAAGCACAAGA
GGTTCCCAAATGGATAGCCACAGTAGTGGCAGCAACTACCATGACAGCTGGGAAACTCGAAGTA
GCTATCCTGAAAGAGACAGATACCCTGAGAGAGATACCAGAGATCAAGCAAGGGATTCTTCCTT
TGAGAGAAGGCATGGAGAAAGAGACCGTCGGGATAACAGAGAACGAGATCAAAGACCAAGCTCA
CCTATTCGCCATCAGGGGAGGAGTGAGGAGCTTGAGCGAGAGGAAAGAAGAGAGGAAAGACGAA
TAGACAGAGTGGATGAGAGACGAGATGAAAGGGTCAGAGACAGAGATAGGGAGAGAGAGAGAGA
GCGGGAGAGGGAGAGAGATCGGGAACGGGAGCGGGAGCGGGAAAAGGAAAGAGAAAGAGAACTA
GAAAGAGAGAGAGCTAGAGAGCGGGAGAGAGAGAGAGAGAAAGAGAGGGAGAGAGAGCGAGAAA
GAGAAAGAGATCAGAGAGATCGTGACCATGATCGAGAGCGAGAAAGAGAGAGGGAGCGAGAGAG
GGAAAAAGAACGGGAGCGAGAAGAGAGAGAGAGGGAGAGAGAAAGGGAAAGGGAACGGGAAAGA
GAAAGGGAACGGGAGCGGGAGAGAGAGCGAGAACGTGAGCGGGAGCGAGAAAGGGCCAGAGAAA
GAGAAAAAGAACGAGAGCGGCAAAGAGAATGGGAGGATAAAGACAAGGGACGCGATGACCGGAG
GGAGAAGCGCGAGGACGTTCATGTTCGAGAGGACAGGATCCCCAGAGACGGCCACGAGGAGAGA
AAGTCCAAGAAACGCTATAGAAATGAAGGGAGTCCCAGCCCCCGGCAGTCCCCCAAGCGCCGGC
GGGAGCATTCTCCTGACAGTGACACCTACCACAGTGGGGATGACAAAAATGAAAAGCATAGACT
CTTGAGCCAGGTCGTACGGCCACAGGAATCTCGTTCTCTCAGCCCGTCCCACCTCACAGAAGAC
AGGCAGGGTAGATGGAAAGAGGAGGAGCGTAAATCGGAAAGGAAGGAGAGTTCAAGGCGCTATG
AAGAACAAGAACTCAAAGAGAAGCTTTCTTGTGGCGACAGGCAAAGGGAGCAGACAGAAAGCGT
GGACGGCGGCTCGAGAGCGCGCAGCGCGCAAGACCTGCTCAGCCATCGCCAGGCTGAAGACCGC
GACCGAGATGGGTCTGATCGAGCCCATGATGAAAAGAAAAAAGCAAAAGCTCCGAAGAAACCCG
TAAAGAAAAAGAGGGAGGAGGATGTTGGAATAGAGAGGGGCAACCCTGAGACACACGAGGATAG
TCAAGTGTTTTCACCAAAAAAAGGACAGAAAAAGAAAAACATTGAAAAAAAGCGTAAAAGATCC
AAGGGGGATTCTGATGTTTCTGACGAAGAGGCAGCCCCGCAGAGTAAGAAGAAGAGGGGTCCAC
GCACACCCCCTCTTGCCATCAAGGAGGAGCTGATTGAGATTTCCACTGACAAGGAAGGCATCCT
TGAGGATCCCCTGAAGAAAGAAGATACCGCCTTTAGTGACTGGTCTGATGAGGATGTGCCTGAC
CGCACAGACGGCTTGGAAGCTGAGCACACTGCAGCCGCGGCCACTCCCGGGAGCACCCCTTCCC
CCATGTCGTCTCTTCTCCCTCCCCCGCCCCCTGTGGCTGCTGCCGGTACTGCAGCCACTGCTCT
TGCCGCCTCAGCCATTTCTGCCACCACCTCTACCACCATTTCAAGCTCTGGTGCCACCTCCAAT
ATCAATGCCAGTGAAGACTCACACAGAAAATGCCACAGGGCACGAGGGGAGAAGGTAGAGGTGT
CTCATGTGACCCTGGAAGATACACCACATCGCAAACTGGTGGATCAAAAGAGAAGCAGCAGCCT
GGGAAGCAATCGGAGTCACCGCAGCCATACCTCTGGTCGCCTGCGCTCCCCATCTAATGATTCT
GCACATCGAAGTGGGGACGATCAGGGTGGTCGGAAGAGAGTGCTCCACAGTGGCTCCAGAGATA
GAGAAAAGACAAAGAGCCTAGAGCTCACAGGAGAGAGAAAATCTAGGATCGATCAGTTAAAGCG
TGGAGAGCCCAGTCGGAGTACTTCTTCAGATCGCCAGGATTCCAGAAGCCACAGCTCCAGAAGA
AGCTCTCCTGAGTCAGACCGACAGGTTCACTCCAGGTCTGGGTCATTTGACAGCAGAGACCGGC
TTCAAGAACGAGATAGGTATGAGCATGACAGAGAGCGTGAGAGGGAGCGGAGAGATCCCAGACA
AAGGGAGTGGGACCGGGAAGCAGACAAAGAGTGGCCTCGGACCCGAGACCGTGATAGACTTCGG
GAACGCGAGAGAGACCGAGACAAAAGGAGAGACTTGGACAGAGAGAGAGAGAGACTGGTCGCCG
ACCCCATGGAAAGAGACAGAGAACGAGATAGAACTTTTGAGACGTCTCAGTTGGAATCTGTGAA
GCGAAGTGAAGTCAAATTGGAGAGTGAACACGACAGAGACCTGGAGGGCAGCTCCCGGGACTCT
GTGGCCTTGGACAAAGAAAGGATGGACAGAGACCTGGGGTCTGCGCAGGGGTTTGAGGATGTGA
GTAAAGCGGAGAGAACAGAGAGTCTGGAAGCAGGAGATGACGAGTCCAAGTTAGATGATGCGCA
TTCGTTAGGGTCTGGTGCTGGGGAAGGCTATGAGCCCATCAGTGACGACGAGCTAGATGAAATT
CTGGCAGGGGATGCAGAAAAGAGAGAGGACCAGCAGGAAGAGGAGAAGATGCCAGATCCATTAG
ATGTGATAGATGTGGACTGGTCTGGACTAATGCCAAAGCATCGGAAAGAGCCGAGAGAGCCCGG
GGCTGCACTCTTAAAGTTCACACCCGGAGCCGTGCTACTACGAGTTGGGATTTCTAAAAAGTTG
GCCGGTTCTGAGCTCTTTACAAAAGTTAAAGAAACATGTCAACAACTTCTAGAGAAACCCAAAG
ATGCAGACAGCCTTTTTGAACATGAACTAGGGGCTCTCAACATGGCTGCTTTACTTCGAAAAGA
AGAGCGGGCGAGTCTCCTTAGTGACCTGGGACCATGTTGTAAAGCATTATGTTTCAGACGGGAT
TCTGCAATCCGGAAGCAGCTTGTGAAGAACGAAAAGGGAACCGTGAAGCAGGCGTACACCAACA
CTCCGATGGTGGACAACGAGCTGCTTCGGCTGAGTCTTCGGTTACTCAAGAGGAAGACTTCCTG
CCACACCCCTGGGCAGGAAAAGACTGAAGATGGGAAATTAGCCCCGTGCAGTGGCCAGCAGGAG
CTGTGTGTGTCCTAGGCAGAGATTGAGGACGGCCCGTTTGCTCTCTCTTCACAGGAGTGCATAA
TCTTTCTCAAAGTTTTTTGTTTTGAGACATTGCTAATTACAGAGACAGAAGAGTCACCGGCCAC
ATCAGATGTGAAGAACTTCAGTCTTCAGAGACACCAGTTTTGGTTCATTTAAGATTTTACATTA
ATTTTTATACAGTAATTGACACTCAGGCAAAATAATGTGAAAATGTCTAGATTTAGTAATTTCG
TCTGTGTCTTCATTAAAATTGAAGATTTTAAGTAACCAGGTCACCCCTGCTCTTCCAGCCTATG
AATACTTCCTATGAAATAAAAGCACTGATTTTTATTCTGGATCACCACGCAGAACTGACCGTAG
TCAGAAAGGTGTGTCGCTAGAGGCTGCTGCACAGGCTGCAGTGCCGTGTACAGAGCTCTGAGGT
GCGCCGGCCTTGCGAGTGCGCCCGGAGGCAGTCTTCACAAGGAAACCCCAGTGGGTTTGCTTTT
TTCTTTTGAAAATTCTAAAATAAATGACTCCATGGGATTTTTTTTTACACATGTACATTGCTAC
ATTATATATTGGAAGTCTTTGGACTTTTGAGTGGGGTTTAATTGTTCATTATCAGAGACTGTGT
GCTATTTTATTTTTAATAAATGTACGTTCCCTTTTCTTGTTGTA

hide sequence

RefSeq Acc Id:

XM_063274280 ⟹ XP_063130350

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,016,686 - 57,081,161 (+)	NCBI

RefSeq Acc Id:

XM_063274281 ⟹ XP_063130351

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	57,016,686 - 57,081,161 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001163942	(Get FASTA)	NCBI Sequence Viewer
	XP_006252378	(Get FASTA)	NCBI Sequence Viewer
	XP_017455179	(Get FASTA)	NCBI Sequence Viewer
	XP_063130350	(Get FASTA)	NCBI Sequence Viewer
	XP_063130351	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58718	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015467
	ENSRNOP00000015467.5

RefSeq Acc Id:

NP_001163942 ⟸ NM_001170471

- UniProtKB:

E9PSN4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSKIRRKVTVENTKTISESTSRRPSVFERLGPSTGSTTETQCRNWLKTGSCLYGNTCRFIHGPS
PRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDSESQKRNTEESSSPVRKESSRGRHRDKEDIK
IVKERTPESEEENVEWETNRDDSDNGDINYDYVHELSLEMKRQKIQRELMKLEQENMDKREEII
IQKEVSPEVVRSKLSPSPLRKSSKSPKRKSSPKASSAGKKERKAAVVASPLLDQQRNSKSNQSK
KKGPRTPSPPPPILEDIILGKKYKEKYKVKDKIEEKPRDGKDRGRDFERQREKRDKPRSSSPGQ
HHSPLSSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQRTLTPSLRRSASPYPTHCLSSPQRKQ
SPPRHRSPMREKGRHDHERTSQSHDRRHERREEARGKRDREKDTREERESEHDHRDDREPRDSR
DRRDTRDRRELRDSRDMRDSREIRDYSRDTKESRDPRDSRSARDVHDYRDREARDAHARDVRDV
RDARDARDVRDVRDVRDARDVRDVRDARDVRDARDVRDVRDVRDVRDTRDARDARDARDGHRKE
DVYQEEARSYGRNHLREESSRVELRNDSRNESRSEIRNDRMGRSRGRGPELPEKGGRSTRGSQM
DSHSSGSNYHDSWETRSSYPERDRYPERDTRDQARDSSFERRHGERDRRDNRERDQRPSSPIRH
QGRSEELEREERREERRIDRVDERRDERVRDRDRERERERERERDREREREREKERERELERER
AREREREREKERERERERERDQRDRDHDREREREREREREKEREREERERERERERERERERER
ERERERERERERERAREREKERERQREWEDKDKGRDDRREKREDVHVREDRIPRDGHEERKSKK
RYRNEGSPSPRQSPKRRREHSPDSDTYHSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGR
WKEEERKSERKESSRRYEEQELKEKLSCGDRQREQTESVDGGSRARSAQDLLSHRQAEDRDRDG
SDRAHDEKKKAKAPKKPVKKKREEDVGIERGNPETHEDSQVFSPKKGQKKKNIEKKRKRSKGDS
DVSDEEAAPQSKKKRGPRTPPLAIKEELIEISTDKEGILEDPLKKEDTAFSDWSDEDVPDRTDG
LEAEHTAAAATPGSTPSPMSSLLPPPPPVAAAGTAATALAASAISATTSTTISSSGATSNINAS
EDSHRKCHRARGEKVEVSHVTLEDTPHRKLVDQKRSSSLGSNRSHRSHTSGRLRSPSNDSAHRS
GDDQGGRKRVLHSGSRDREKTKSLELTGERKSRIDQLKRGEPSRSTSSDRQDSRSHSSRRSSPE
SDRQVHSRSGSFDSRDRLQERDRYEHDRERERERRDPRQREWDREADKEWPRTRDRDRLRERER
DRDKRRDLDRERERLVADPMERDRERDRTFETSQLESVKRSEVKLESEHDRDLEGSSRDSVALD
KERMDRDLGSAQGFEDVSKAERTESLEAGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGD
AEKREDQQEEEKMPDPLDVIDVDWSGLMPKHRKEPREPGAALLKFTPGAVLLRVGISKKLAGSE
LFTKVKETCQQLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDSAIR
KQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLLKRKTSCHTPGQEKTEDGKLAPCSGQQELCVS

hide sequence

RefSeq Acc Id:	XP_006252378 ⟸ XM_006252316
- Peptide Label:	isoform X1
- UniProtKB:	E9PSN4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSKIRRKVTVENTKTISESTSRRPSVFERLGPSTGSTTETQCRNWLKTGSCLYGNTCRFIHGPS PRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDSESQKRNTEESSSPVRKESSRGRHRDKEDIK IVKERTPESEEENVEWETNRDDSDNGDINYDYVHELSLEMKRQKIQRELMKLEQENMDKREEII IQKEVSPEVVRSKLSPSPLRKSSKSPKRKSSPKASSAGKKERKAAVVASPLLDQQRNSKSNQSK KKGPRTPSPPPPILEDIILGKKYKEKYKVKDKIEEKPRDGKDRGRDFERQREKRDKPRSSSPGQ HHSPLSSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQRTLTPSLRRSASPYPTHCLSSPQRKQ SPPRHRSPMREKGRHDHERTSQSHDRRHERREEARGKRDREKDTREERESEHDHRDDREPRDSR DRRDTRDRRELRDSRDMRDSREIRDYSRDTKESRDPRDSRSARDVHDYRDREARDAHARDVRDV RDARDARDVRDVRDVRDARDVRDVRDARDVRDARDVRDVRDVRDVRDTRDARDARDARDGHRKE DVYQEEARSYGRNHLREESSRVELRNDSRNESRSEIRNDRMGRSRGRGPELPEKGGRSTRGSQM DSHSSGSNYHDSWETRSSYPERDRYPERDTRDQARDSSFERRHGERDRRDNRERDQRPSSPIRH QGRSEELEREERREERRIDRVDERRDERVRDRDRERERERERERDREREREREKERERELERER AREREREREKERERERERERDQRDRDHDREREREREREREKEREREERERERERERERERERER ERERERERERERERAREREKERERQREWEDKDKGRDDRREKREDVHVREDRIPRDGHEERKSKK RYRNEGSPSPRQSPKRRREHSPDSDTYHSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGR WKEEERKSERKESSRRYEEQELKEKLSCGDRQREQTESVDGGSRARSAQDLLSHRQAEDRDRDG SDRAHDEKKKAKAPKKPVKKKREEDVGIERGNPETHEDSQVFSPKKGQKKKNIEKKRKRSKGDS DVSDEEAAPQSKKKRGPRTPPLAIKEELIEISTDKEGILEDPLKKEDTAFSDWSDEDVPDRTDG LEAEHTAAAATPGSTPSPMSSLLPPPPPVAAAGTAATALAASAISATTSTTISSSGATSNINAS EDSHRKCHRARGEKVEVSHVTLEDTPHRKLVDQKRSSSLGSNRSHRSHTSGRLRSPSNDSAHRS GDDQGGRKRVLHSGSRDREKTKSLELTGERKSRIDQLKRGEPSRSTSSDRQDSRSHSSRRSSPE SDRQVHSRSGSFDSRDRLQERDRYEHDRERERERRDPRQREWDREADKEWPRTRDRDRLRERER DRDKRRDLDRERERLVADPMERDRERDRTFETSQLESVKRSEVKLESEHDRDLEGSSRDSVALD KERMDRDLGSAQGFEDVSKAERTESLEAGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGD AEKREDQQEEEKMPDPLDVIDVDWSGLMPKHRKEPREPGAALLKFTPGAVLLRVGISKKLAGSE LFTKVKETCQQLLEKPKDADSLFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDSAIR KQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLLKRKTSCHTPGQEKTEDGKLAPCSGQQELCVS hide sequence

RefSeq Acc Id:

XP_017455179 ⟸ XM_017599690

- Peptide Label:

isoform X4

- Sequence:

show sequence

MKRQKIQRELMKLEQENMDKREEIIIQKEVSPEVVRSKLSPSPLRKSSKSPKRKSSPKASSAGK
KERKAAVVASPLLDQQRNSKSNQSKKKGPRTPSPPPPILEDIILGKKYKEKYKVKDKIEEKPRD
GKDRGRDFERQREKRDKPRSSSPGQHHSPLSSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQR
TLTPSLRRSASPYPTHCLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHERREEARGKRD
REKDTREERESEHDHRDDREPRDSRDRRDTRDRRELRDSRDMRDSREIRDYSRDTKESRDPRDS
RSARDVHDYRDREARDAHARDVRDVRDARDARDVRDVRDVRDARDVRDVRDARDVRDARDVRDV
RDVRDVRDTRDARDARDARDGHRKEDVYQEEARSYGRNHLREESSRVELRNDSRNESRSEIRND
RMGRSRGRGPELPEKGGRSTRGSQMDSHSSGSNYHDSWETRSSYPERDRYPERDTRDQARDSSF
ERRHGERDRRDNRERDQRPSSPIRHQGRSEELEREERREERRIDRVDERRDERVRDRDRERERE
RERERDREREREREKERERELERERAREREREREKERERERERERDQRDRDHDRERERERERER
EKEREREERERERERERERERERERERERERERERERERAREREKERERQREWEDKDKGRDDRR
EKREDVHVREDRIPRDGHEERKSKKRYRNEGSPSPRQSPKRRREHSPDSDTYHSGDDKNEKHRL
LSQVVRPQESRSLSPSHLTEDRQGRWKEEERKSERKESSRRYEEQELKEKLSCGDRQREQTESV
DGGSRARSAQDLLSHRQAEDRDRDGSDRAHDEKKKAKAPKKPVKKKREEDVGIERGNPETHEDS
QVFSPKKGQKKKNIEKKRKRSKGDSDVSDEEAAPQSKKKRGPRTPPLAIKEELIEISTDKEGIL
EDPLKKEDTAFSDWSDEDVPDRTDGLEAEHTAAAATPGSTPSPMSSLLPPPPPVAAAGTAATAL
AASAISATTSTTISSSGATSNINASEDSHRKCHRARGEKVEVSHVTLEDTPHRKLVDQKRSSSL
GSNRSHRSHTSGRLRSPSNDSAHRSGDDQGGRKRVLHSGSRDREKTKSLELTGERKSRIDQLKR
GEPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERERERRDPRQ
REWDREADKEWPRTRDRDRLRERERDRDKRRDLDRERERLVADPMERDRERDRTFETSQLESVK
RSEVKLESEHDRDLEGSSRDSVALDKERMDRDLGSAQGFEDVSKAERTESLEAGDDESKLDDAH
SLGSGAGEGYEPISDDELDEILAGDAEKREDQQEEEKMPDPLDVIDVDWSGLMPKHRKEPREPG
AALLKFTPGAVLLRVGISKKLAGSELFTKVKETCQQLLEKPKDADSLFEHELGALNMAALLRKE
ERASLLSDLGPCCKALCFRRDSAIRKQLVKNEKGTVKQAYTNTPMVDNELLRLSLRLLKRKTSC
HTPGQEKTEDGKLAPCSGQQELCVS

hide sequence

Ensembl Acc Id:

ENSRNOP00000015467 ⟸ ENSRNOT00000015467

RefSeq Acc Id:	XP_063130350 ⟸ XM_063274280
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063130351 ⟸ XM_063274281
- Peptide Label:	isoform X3

Protein Domains

C3H1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PSN4-F1-model_v2	AlphaFold	E9PSN4	1-1728	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699830

Promoter ID:

EPDNEW_R10354

Type:

initiation region

Name:

Zc3h13_1

Description:

zinc finger CCCH type containing 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	57,340,584 - 57,340,644	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307729	AgrOrtholog
BioCyc Gene	G2FUF-13127	BioCyc
Ensembl Genes	ENSRNOG00000011237	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015467	ENTREZGENE
	ENSRNOT00000015467.7	UniProtKB/TrEMBL
Gene3D-CATH	Zinc finger, CCCH-type	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9089272	IMAGE-MGC_LOAD
InterPro	m6A_RNA_Methylation_Regulator	UniProtKB/TrEMBL
	Znf_CCCH	UniProtKB/TrEMBL
	Znf_CCCH_sf	UniProtKB/TrEMBL
KEGG Report	rno:305955	UniProtKB/TrEMBL
MGC_CLONE	MGC:187860	IMAGE-MGC_LOAD
NCBI Gene	305955	ENTREZGENE
PANTHER	CHASCON, ISOFORM D-RELATED	UniProtKB/TrEMBL
	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 13	UniProtKB/TrEMBL
Pfam	zf-CCCH	UniProtKB/TrEMBL
PhenoGen	Zc3h13	PhenoGen
PROSITE	ZF_C3H1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011237	RatGTEx
SMART	ZnF_C3H1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF90229	UniProtKB/TrEMBL
UniProt	B0BN80_RAT	UniProtKB/TrEMBL
	E9PSN4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Zc3h13	zinc finger CCCH type containing 13	RGD1307729_predicted	similar to KIAA0853 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1307729_predicted	similar to KIAA0853 protein (predicted)	LOC305955_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305955_predicted	similar to KIAA0853 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar