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Gene: Adamts6 (ADAM metallopeptidase with thrombospondin type 1 motif, 6) Rattus norvegicus

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Symbol:

Adamts6

Name:

ADAM metallopeptidase with thrombospondin type 1 motif, 6

RGD ID:

1307678

Description:

Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization and proteolysis. Predicted to act upstream of or within circulatory system development and kidney development. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human ADAMTS6 (ADAM metallopeptidase with thrombospondin type 1 motif 6); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

A disintegrin and metalloproteinase with thrombospondin motifs 6; a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6; a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 6; LOC361886

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	37,155,260 - 37,367,077 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	37,155,288 - 37,367,070 (+)	Ensembl				GRCr8
mRatBN7.2	2	35,421,483 - 35,633,305 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	35,421,510 - 35,633,298 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	42,534,492 - 42,746,841 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	40,593,177 - 40,805,543 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	35,449,532 - 35,662,266 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	34,374,142 - 34,589,676 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	34,374,158 - 34,586,755 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	53,495,958 - 53,716,434 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	35,213,712 - 35,434,336 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	31,397,794 - 31,599,803 (+)	NCBI		Celera
RGSC_v3.1	2	35,133,406 - 35,352,203 (+)	NCBI
Cytogenetic Map	2	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

primary ovarian insufficiency (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

8-Br-cAMP (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dimethylarsinic acid (ISO)

dimethylarsinous acid (ISO)

dorsomorphin (ISO)

epoxiconazole (ISO)

gentamycin (EXP)

malathion (ISO)

methylarsonic acid (ISO)

mono(2-ethylhexyl) phthalate (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

paraquat (EXP)

PD 0325901 (ISO)

pentanal (ISO)

propanal (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

sulforaphane (ISO)

testosterone (EXP)

tetrachloroethene (ISO)

trametinib (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

aorta development (ISO)

cardiac septum development (ISO)

coronary vasculature development (ISO)

extracellular matrix organization (IBA,IEA)

heart development (ISO)

kidney development (ISO)

proteolysis (IBA,IEA)

Cellular Component

extracellular matrix (IBA)

Molecular Function

hydrolase activity (IEA)

metal ion binding (IEA)

metalloendopeptidase activity (IBA,IEA)

metallopeptidase activity (IEA)

peptidase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:25807483	PMID:30361391

Genomics

Comparative Map Data

Adamts6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	37,155,260 - 37,367,077 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	37,155,288 - 37,367,070 (+)	Ensembl				GRCr8
mRatBN7.2	2	35,421,483 - 35,633,305 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	35,421,510 - 35,633,298 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	42,534,492 - 42,746,841 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	40,593,177 - 40,805,543 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	35,449,532 - 35,662,266 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	34,374,142 - 34,589,676 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	34,374,158 - 34,586,755 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	53,495,958 - 53,716,434 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	35,213,712 - 35,434,336 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	31,397,794 - 31,599,803 (+)	NCBI		Celera
RGSC_v3.1	2	35,133,406 - 35,352,203 (+)	NCBI
Cytogenetic Map	2	q13	NCBI

ADAMTS6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	65,148,738 - 65,481,920 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	65,148,738 - 65,481,920 (-)	Ensembl			hg38	GRCh38
GRCh37	5	64,444,565 - 64,777,747 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	64,480,319 - 64,813,460 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	64,480,321 - 64,530,348	NCBI
Celera	5	61,441,460 - 61,776,222 (-)	NCBI		Celera
Cytogenetic Map	5	q12.3	NCBI
HuRef	5	61,399,229 - 61,733,640 (-)	NCBI		HuRef
CHM1_1	5	64,444,425 - 64,777,370 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	65,968,856 - 66,303,685 (-)	NCBI		T2T-CHM13v2.0

Adamts6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	104,423,026 - 104,633,203 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	104,424,343 - 104,633,203 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	104,286,518 - 104,496,695 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	104,287,835 - 104,496,695 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	105,077,953 - 105,284,843 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	105,408,255 - 105,615,145 (+)	NCBI		MGSCv36	mm8
Celera	13	108,683,304 - 108,890,181 (+)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	56.42	NCBI

Adamts6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	3,620,795 - 3,902,829 (+)	Ensembl
ChiLan1.0	NW_004955446	3,620,795 - 3,902,829 (+)	NCBI	ChiLan1.0	ChiLan1.0

ADAMTS6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	48,435,291 - 48,769,826 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	46,596,419 - 46,923,452 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	48,517,814 - 48,854,545 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	50,173,296 - 50,505,528 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	50,181,529 - 50,502,433 (+)	Ensembl			panPan2	panpan1.1

ADAMTS6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	50,955,180 - 51,249,075 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	50,955,481 - 51,236,421 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	47,908,675 - 48,192,053 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	51,443,822 - 51,727,266 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	51,443,823 - 51,735,601 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	48,498,253 - 48,787,512 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	49,293,388 - 49,576,663 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	50,181,510 - 50,468,796 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Adamts6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	194,739,311 - 195,028,741 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	3,675,805 - 3,965,210 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	3,798,044 - 3,965,203 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ADAMTS6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	43,702,521 - 44,019,704 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	43,702,519 - 44,010,820 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	46,987,181 - 47,283,577 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ADAMTS6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	61,339,444 - 61,673,366 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666049	9,980,945 - 10,314,741 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Adamts6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624815	4,427,371 - 4,725,031 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624815	4,427,297 - 4,727,991 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Adamts6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	192,863,348 - 193,081,168 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Adamts6
2078 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	132
Count of miRNA genes:	54
Interacting mature miRNAs:	58
Transcripts:	ENSRNOT00000016997, ENSRNOT00000072577
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	42977529	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1300160	Hrtrt3	Heart rate QTL 3	3.62		heart pumping trait (VT:2000009)	absolute change in heart rate (CMO:0000534)	2	35614083	53462005	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	44538110	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Markers in Region

RH142611

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	35,630,982 - 35,631,116 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,587,358 - 34,587,491	NCBI	Rnor6.0
Rnor_5.0	2	53,714,116 - 53,714,249	UniSTS	Rnor5.0
RGSC_v3.4	2	35,432,437 - 35,432,570	UniSTS	RGSC3.4
Celera	2	31,597,907 - 31,598,040	UniSTS
RH 3.4 Map	2	155.7	UniSTS
Cytogenetic Map	2	q13	UniSTS

RH143095

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	35,509,264 - 35,509,559 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,463,514 - 34,463,808	NCBI	Rnor6.0
Rnor_5.0	2	53,591,654 - 53,591,948	UniSTS	Rnor5.0
RGSC_v3.4	2	35,309,304 - 35,309,598	UniSTS	RGSC3.4
Celera	2	31,475,974 - 31,476,268	UniSTS
RH 3.4 Map	2	150.6	UniSTS
Cytogenetic Map	2	q13	UniSTS

BI301712

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	35,562,185 - 35,562,378 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,518,552 - 34,518,744	NCBI	Rnor6.0
Rnor_5.0	2	53,645,227 - 53,645,419	UniSTS	Rnor5.0
RGSC_v3.4	2	35,363,101 - 35,363,293	UniSTS	RGSC3.4
Celera	2	31,529,256 - 31,529,448	UniSTS
RH 3.4 Map	2	155.5	UniSTS
Cytogenetic Map	2	q13	UniSTS

BM392312

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	35,622,363 - 35,622,528 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	34,578,739 - 34,578,903	NCBI	Rnor6.0
Rnor_5.0	2	53,705,497 - 53,705,661	UniSTS	Rnor5.0
RGSC_v3.4	2	35,423,818 - 35,423,982	UniSTS	RGSC3.4
Celera	2	31,589,288 - 31,589,452	UniSTS
RH 3.4 Map	2	155.7	UniSTS
Cytogenetic Map	2	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	87	59	6	350	187	11	140	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005500311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CN542748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016997 ⟹ ENSRNOP00000016997

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	37,155,288 - 37,367,070 (+)	Ensembl
mRatBN7.2 Ensembl	2	35,421,510 - 35,633,298 (+)	Ensembl
Rnor_6.0 Ensembl	2	34,374,158 - 34,586,755 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000072577 ⟹ ENSRNOP00000064275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	34,546,988 - 34,586,755 (+)	Ensembl

RefSeq Acc Id:

NM_001108544 ⟹ NP_001102014

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,155,288 - 37,367,073 (+)	NCBI
mRatBN7.2	2	35,421,510 - 35,633,301 (+)	NCBI

RefSeq Acc Id:

XM_017591186 ⟹ XP_017446675

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,183,676 - 37,367,077 (+)	NCBI
mRatBN7.2	2	35,449,909 - 35,633,305 (+)	NCBI
Rnor_6.0	2	34,403,071 - 34,589,676 (+)	NCBI

Sequence:

show sequence

CTAGTAGTGGCAGACAAAATGATGGTGGGCTACCATGGCCGTAAAGACATTGAACATTATATTT
TGAGCGTGATGAATATTGTCAGGTTGCCAAACTTTACCGTGACTCCAGTCTAGGAAACGTTGTG
AATATTATAGTGGCCCGCTTAATTGTTCTCACAGAAGATCAGATATGACATCTGCACTTATAAA
AATAAGCCCTGTGGAACACTGGGCTTGGCCTCTGTGGCTGGAATGTGCGAGCCTGAAAGGAGCT
GCAGCATTAATGAAGACATTGGCCTGGGGTCGGCCTTTACCATTGCACATGAGATTGGTCACAA
TTTTGGTATGAACCATGATGGAATTGGAAATTCTTGTGGGACGAAAGGTCATGAGGCAGCAAAA
CTTATGGCAGCTCATATCACAGCAAATACCAATCCCTTCTCCTGGTCTGCCTGCAGCAGAGACT
ACATCACCAGCTTTCTAGATTCAGGCCGTGGTACTTGCCTTGATAATGAGCCTCCAAAGCGTGA
CTTTCTTTACCCAGCTGTGGCCCCAGGTCAGGTGTATGATGCTGACGAACAGTGCCGTTTCCAG
TACGGAGCAACGTCCCGCCAATGCAAATATGGGGAAGTGTGTAGAGAGCTCTGGTGTCTCAGCA
AAAGCAACCGCTGTGTCACCAACAGTATTCCAGCTGCTGAGGGGACCCTGTGCCAGACGGGGAA
CATTGAAAAGGGGTGGTGTTATCAGGGAGATTGTGTTCCTTTTGGCACTTGGCCCCAGAGCATA
GATGGGGGCTGGGGTTCCTGGTCCCTGTGGGGCGAGTGCAGCAGGACCTGTGGAGGAGGAGTCT
CTTCATCCCTCAGACACTGTGACAGCCCAGCACCTTCTGGAGGTGGAAAATATTGCCTTGGGGA
AAGGAAACGCTACCGCTCTTGCAACACAGATCCATGCCCTTTGGGTTCCCGAGATTTTCGAGAA
AAACAGTGTGCAGACTTTGACAGTATGCCTTTCCGGGGAAAGCATTATAACTGGAAACCCTATA
CTGGAGGTGGGGTAAAACCTTGTGCATTAAACTGCCTGGCTGAAGGCTACAATTTCTACACGGA
GCGAGCCCCTGCTGTGATAGATGGGACCCAGTGCAATGCGGACTCACTGGACATCTGTATCAAC
GGAGAGTGCAAGCACGTAGGTTGTGATAATATTTTGGGATCTGATGCTAGGGAAGATAGGTGCC
GAGTCTGTGGTGGGGACGGAAGCACCTGTGATGCCATTGAAGGGTTCTTCAATGACTCATTGCC
CAGAGGAGGTTATTTGGAAGTGGTTCAGATACCAAGAGGCTCTGTTCACATTGAAGTAAGAGAA
GTTTCCATGTCAAAAAATTACATTGCTTTAAAATCTGAAGGGGATGATTACTATATTAATGGTG
CCTGGACTATTGACTGGCCTAGGAAATTTGATGTTTCTGGGACAGCTTTTCACTACAAGAGACC
AACAGATGAACCAGAATCCTTGGAAGCTCTGGGACCCACCTCTGAGAACCTCATTGTAATGGTT
CTCCTCCAAGAACAGAATTTGGGAATTAGGTACAAGTTCAATGTTCCCATCGTTCGTACTGGCA
GTGGAGATAATGAAGTTGGCTTCATGTGGACTCACCAGCCCTGGGCCGAGTGCTCTGCTACTTG
TGCTGGAGGTGTCCAAAAACAAGAAGTGGTCTGTAAAAGATTGGATGACAACTCCATTGTCCAG
AACAATTTCTGTGACCCTGACAGTAAACCACCGGAAAATCAAAGAGCCTGCAGCACTGAGCCTT
GCCCACCTGAATGGTTCATTGGTGACTGGCTAGAGTGCAGCAAGACTTGTGATGGTGGGATGCG
CACAAGGGCCGTGCTCTGCATCAGGAAAGTTGGACCTTCTGAGGAGGAAACACTGGACTACAGT
GACTGTTTAACACACCGGCCTGTGGAGAAAGAGTCCTGCAACAACCAGTCATGTCCACCTCAGT
GGGTAGCTTTGGACTGGTCTGAATGTACTCCAAAATGTGGTTCAGGATTCAAGCATCGGATTGT
TCTGTGCAAGAGCAGTGACCTTTCTAAAACGTTCCCAGCTGCGCAATGTCCAGAGGAGAGCAAG
CCTCCTGCTCGCATCCGCTGTAGTCTGGGCCGCTGCCCTCCTCCCCGCTGGGTGACAGGAGACT
GGGGCCAGTGCTCTGCTCAGTGCGGCCTTGGACAGCAGATGCGCACTGTCCAGTGCCTCTCCTA
TACTGGACAGGCATCTGTTGACTGCCCAGAAGCTGTTCGGCCTCCATCCATGCAGCAGTGTGAC
AGCAAATGTGATAGCACCCCTCTCTCCAGTACTGAAGAGTGCAAAGATGTGAACAAAGTGGCAT
ATTGCCCACTGGTGCTGAAGTTCAAGTTCTGCAGCCGCGCATACTTCAGACAGATGTGTTGTAA
GACCTGCCAAGGACACTGACCCGCAGAGAGCCAGACAGTCCTGTCATTTCATCATGGAAACCCG
TCCGTCAACGAGAGCCACCCAGAGGAAGCGGATGGATGTTCTTACAAAAGCATTACCCTGTGGA
AAATGTAACCACTGGTCAGCCCCAGCTGACAGGATTTCAATATTATTTTAACTTCTGTGAAGTG
GGATTTATTGATCCAAAGTGCTGGACACGGTATCAGGAGGGAGATCTGAGAGATCCAAACAACA
CAGGAAACTCACTTACTGTGGAACGTTTGTGTTCTTTCGAGTAAATCTAACAGCCTGTTTACCT
CCTTGGACCATTAAGATAATTTTTATTATGGACTTAGCAATGACACTGAATCCATTTGTATTTA
AGACTGTTTAAAATGTAGTTATTATGACTTGGTTAACTATGAAAGTAGAAGAGAGTCAGAATTC
TTAAGTCATAGCTTAAAAATATTTACTACCCTTTATCGCACCACAATAGCACCAAACTTAAATT
ATAAAATGGGCTTTAAACTGTAATTTAAGAAACAACTATAAATCAAAAGTAATGAAAGTTTGTA
TTATTTTTCTCTGTCCCACTTACTTTCCTTAGGAGTAACCCCTGTTCTGAACACTGCTGTGAGC
CCTGTATAAACTCCAGTAACAGTGAGGGCTTGGCTTGAAGCCGCGCAGCCATTGCTGCAGCTGC
GCATGTCTATAAACTCAGTGGCCAGCTTGCCGTCGTGCAAGTGAAGCTGAGATTTCCATTAAAA
CTTTAAGAGAGAAACATTTCAATTTCATGCAGAAGCCAGACCTAGGCTATGGCAGAGACTGAAG
CACCATGCCCTTTGCAGCCATCACGTGGGGTGCCGTACTCGAGTCACCCGGACTCCTTAGTGTT
TACATCCCCACCAGCCACAGATCAGCTTCTGCCCTACTGGGCTGTTGCATGCATGGTAAGCTCA
TGGCGACAATGCCATGGGAAAGATAAGCTCGCTCAGTAACAGCCACTTGCTGACAGCACGATGG
GTTCCAGATGTCCCTTCTTTGATATGGTAGAAGGGCATTTATTTATATGAGAGCAAGTGTATAC
GTGTGTGTATGTGTGTGTGTGTGCAGACACTCCTGAGTGGGGGAAACAGGTGAGTTTGCTTGCA
TATAAATGTGCTGTTTCTGTGAGTTTTAAAGTCGGGGAGGATAACAACCAAAGAAGAAAAGCTC
CACGAAGAGAGATCACAATATAAATTTAAAAGTCACTTGACCACATCATTTTTACAGATAGTCT
CAATGGCAATTAAATGTGAAACCCAGTTTCCTGGGCGTGTCAGGTTCTAAAAATCACACTTTAC
TGAACTGAAATGACTAGCCTGGGTCTTCCCATCTCCAAGCTTCACAAGTTGCCATCAAAAGATT
CGACAAGTAGATTTTTAAGGGTACTTGCTTACGCTAATACTTCGTACTTGAACATTTGTAATTT
GTAGTAGGTTGTTGGTGAATGTGCTTTCTGTCGAGCACACCTCCTTAGTCCTTCACATGTGTGC
CCCATACACACAGCATCGTCTAAAACAAACTAAACACCTACATGGTAACAAAGAGAATATTTTC
ATTTAAGAGCATGTCTCACTTATCTACCACTGTGCTCTGAAGATAGATTTTGGTGTGTCACCTA
TGTGGTGACCTTAGAAAGGCTGTCACCAAAGGCCTCCTCGGCTTCTTACTTGCTATGTACAGTT
GGCCTGGATGCTAGCCCACAGTCCAGTGTGACCAGCCATATCTCATTCCCTGCTTCTTCCTCAG
TATCATCCCCACGTTTTCCAGAGGAGGCCAACACCTCCATATAACTGCCCTGAGAAGACCAGCC
TGAGTGCCATCACCGCCATTCCAGTAAAGTAAGGCAACACATGGGAGCCTGGCCCAGACTTGAA
TTCCCTTGGTCCTTTTCAAAGGACAGTTAACTTGGTGCTAATGTGCCTGGTAAAATATAGGAAG
ACTGGCGATCGCCGAGGCAGTTTACACATAGGCTTGCTATCCAGATCTGATATTTTTTAATCAA
CTTTAATACTAACTCATGCTTATATTCCAAGAAGATTTCCTACAGTACTTGTAGAAAGCTGTAT
TTACCTCACTTGGAAGCTAACACCGCAAGGGCTGACTCCCAGGTACTGTGCTTAGCTAGGATAA
GAGATCAGCCTGAGCTCTCCACAGGAAGTGCATTGGCATTGCTGACAGGCTACTGCCAGGGGCA
GCACAGCCTTCCTTCTGTGGGGGAAGCAAAGCATGGGTATAACAGGATTCAACATTCTCAAGGA
GACCCTGAACTTAATCCTGAGCAGGTTACACAGAGCAGAGAGCATCTTCCATAGCACAGCACAC
CACCACTGCTACTGCAGCCATCTCTGTCCTACAAGGTGGCAGGGATCAGCAGCGGAGGCCGGGC
TGCCTTGGCAAGCACTCCAAGTGTTATGAGCTGTATTGACTACTTAGGGTACCAGGGTACCCAT
GGTTAGGAGCAGTGTCTGCCACTGGCATAAAGGCCTCCCAAAAAAAGGAATGTTAAATATACCC
AAATGATTGAACCCCTAAAGGCAGGTATGACTTCCCAATAGTCCATTTAATTAGGAATTTATGT
ATTTGAGTGAATGTCTTATAGGTATCGTTAATAATACAGAACAAAATTACCTTTGTATTATTGT
GACTAGTTGTTGCTTATTATTTTATACTCGGTATTAATGTGGTACACTGTTACTATTTTTGCTT
TTGTAAATTATATTCTAATTTATTGCCATGTTTCCTAACACCTGTCCTTTATTCATTCTCCTGC
TCGTAATGGAAATGAAAGTCATTGCAACACTTGATGGAGTGAAATTTCATACCAGGCACAGATG
TTTTTTAACATAGATAATTCAGTAAATAATAAAATCTTCAGCTTGTAAAAGTGATGCAGA

hide sequence

RefSeq Acc Id:

XM_017591187 ⟹ XP_017446676

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,241,978 - 37,367,077 (+)	NCBI
mRatBN7.2	2	35,508,204 - 35,633,305 (+)	NCBI
Rnor_6.0	2	34,463,886 - 34,589,676 (+)	NCBI

Sequence:

show sequence

AAAAAAAAGAGAAAAAGGAAAAAAACAAAAACAAAAACAAAAATCAAAAGATGAAATTCGAAAA
TAGACCTTAAAAATGTATTAGTACAGTCACTCAATTTGGAATTCATTTCAAAATGTGGTCCTGA
ACACCTATATTATGGACTAACAATTTTTAATCTTAGTAGGAAAACATCGTATTATACTTACCTT
GTGCTAGAATGAGAGAAGTGCTATAAATAGACAATCAAGAATTTATTTGACATGTTCAGTAATT
TTTAAAACAAAGCACTGATCATATCATTTTAAGGATAGTTTAGGATGAATTCATTTACATAAGT
TATAAACACTATTGAAGTTCTCCTCTTGTAGAAACCTGACCAGACCTGAAATTTCTCTTATCTT
AGCATTTGTTTTCAGATTAAAATCTTAATCTCTATCAACATAAAGACATATTGTATAAGATGCT
CAGTATTTGTGTGTATTTTCAATGGCAGTCCTCATGAATCTTCCTCTTTGTATTCTGTTTCTAT
CCTACTGGTGATTGTCTAGCTGTTTAGCTAGTACTGGCTCTATGTACTAAATGCCAGGAGTAAG
CCAAATGAATGCAACAAATTTCGTGTTTTTTATGTACTAAAAACCATACAGAAGCAAAGACACG
TGGACTAATTTTGAACTTCTGTCAAGTCTTCTGTAGTTGGAATTGTATTGTGGCTGTTAAAACA
CTATAAAAGGGACTCTCTAGGTTGCTAGTAATATACAGTGAAATGATCACTGGTTTGTGAGAGA
TGAAGAACTATTAATATTTGCATTGTAGCAAATATTAATTGTTTTAATAAAAACAATTCAAAGG
CATTATTTAATCTTCATTGCTTTTCTGTATTTTGTACATAAAAGAAAAATAAGTATTGACAGGA
TTCTAATGGGCTTATTTATCCTATATTTTATAACAAGGGTTCCTTTGTATATTCTCATGAAAAT
GCCCTAAGTTAAAACCACTAGGAAATGGATAAATATTAAAAAAGAAAGAAAGAACAAAAGAAGA
AAAAGAAAGACTTGAGATAACTATCAGGTCTACCTCTCTAATAATAAACTAAATAACTAAATCT
TATTATAATTTGTCCAATCAATAAAGGATTTTAAACACTAGCCTCATTAAAAAAAAAAAACACT
TCACTGGAGCACAAAGATAAAATCGTTACTGTAAAAAGTCTTTGTTCTATTTCCTGTTCAATGA
GCTTAATTGTTTTAACAACTATGAGTGAGATATCTATATCTGTTTCTGTGTCTATATTTAAATC
CAGAAACATTTTGCACTTTGATAAATGATTACGTTTACATCTATGTTTTGTAGTTGACTCAAAA
GTTTCATAGGACTTTATTTTAGTTTTTCTTTTCAAGAAAAAGAATCCTTGAAAGAATTAACTGT
TAAGGAACTGTTACCCAGCCAACAAAATACATATCTTCCTCTACTTAGAGAGTGCATAGGACAA
GGGTGATGGAGGCATTAACAATGAGCTTCTATGATTTATAGAAATCCATGATTCACTGTTTTAA
CTGGAAATACAAAAAGACATGGCCCTAAAATGCCACTAGAATAATCTCTCTTGTCATTCTGCAA
CACTAGGTGTTATTGATCAGTCAGGAGATGGTGTTTACCAACTCCCAATATTTTTTTTCAGATT
TCTTAAACTCGGTGATTCAATAAGTGGTTCATGAATCGCCCAGAAGCCGTCCCGATTAAATAAT
AAAGAACCCATTTCCGTTAAAATGGACGTGTTATGCCAGCTTCTGATGTTTTCCGACGACGGCT
TTGCAGTTCAGGCCGTGGTACTTGCCTTGATAATGAGCCTCCAAAGCGTGACTTTCTTTACCCA
GCTGTGGCCCCAGGTCAGGTGTATGATGCTGACGAACAGTGCCGTTTCCAGTACGGAGCAACGT
CCCGCCAATGCAAATATGGGGAAGTGTGTAGAGAGCTCTGGTGTCTCAGCAAAAGCAACCGCTG
TGTCACCAACAGTATTCCAGCTGCTGAGGGGACCCTGTGCCAGACGGGGAACATTGAAAAGGGG
TGGTGTTATCAGGGAGATTGTGTTCCTTTTGGCACTTGGCCCCAGAGCATAGATGGGGGCTGGG
GTTCCTGGTCCCTGTGGGGCGAGTGCAGCAGGACCTGTGGAGGAGGAGTCTCTTCATCCCTCAG
ACACTGTGACAGCCCAGCACCTTCTGGAGGTGGAAAATATTGCCTTGGGGAAAGGAAACGCTAC
CGCTCTTGCAACACAGATCCATGCCCTTTGGGTTCCCGAGATTTTCGAGAAAAACAGTGTGCAG
ACTTTGACAGTATGCCTTTCCGGGGAAAGCATTATAACTGGAAACCCTATACTGGAGGTGGGGT
AAAACCTTGTGCATTAAACTGCCTGGCTGAAGGCTACAATTTCTACACGGAGCGAGCCCCTGCT
GTGATAGATGGGACCCAGTGCAATGCGGACTCACTGGACATCTGTATCAACGGAGAGTGCAAGC
ACGTAGGTTGTGATAATATTTTGGGATCTGATGCTAGGGAAGATAGGTGCCGAGTCTGTGGTGG
GGACGGAAGCACCTGTGATGCCATTGAAGGGTTCTTCAATGACTCATTGCCCAGAGGAGGTTAT
TTGGAAGTGGTTCAGATACCAAGAGGCTCTGTTCACATTGAAGTAAGAGAAGTTTCCATGTCAA
AAAATTACATTGCTTTAAAATCTGAAGGGGATGATTACTATATTAATGGTGCCTGGACTATTGA
CTGGCCTAGGAAATTTGATGTTTCTGGGACAGCTTTTCACTACAAGAGACCAACAGATGAACCA
GAATCCTTGGAAGCTCTGGGACCCACCTCTGAGAACCTCATTGTAATGGTTCTCCTCCAAGAAC
AGAATTTGGGAATTAGGTACAAGTTCAATGTTCCCATCGTTCGTACTGGCAGTGGAGATAATGA
AGTTGGCTTCATGTGGACTCACCAGCCCTGGGCCGAGTGCTCTGCTACTTGTGCTGGAGGTGTC
CAAAAACAAGAAGTGGTCTGTAAAAGATTGGATGACAACTCCATTGTCCAGAACAATTTCTGTG
ACCCTGACAGTAAACCACCGGAAAATCAAAGAGCCTGCAGCACTGAGCCTTGCCCACCTGAATG
GTTCATTGGTGACTGGCTAGAGTGCAGCAAGACTTGTGATGGTGGGATGCGCACAAGGGCCGTG
CTCTGCATCAGGAAAGTTGGACCTTCTGAGGAGGAAACACTGGACTACAGTGACTGTTTAACAC
ACCGGCCTGTGGAGAAAGAGTCCTGCAACAACCAGTCATGTCCACCTCAGTGGGTAGCTTTGGA
CTGGTCTGAATGTACTCCAAAATGTGGTTCAGGATTCAAGCATCGGATTGTTCTGTGCAAGAGC
AGTGACCTTTCTAAAACGTTCCCAGCTGCGCAATGTCCAGAGGAGAGCAAGCCTCCTGCTCGCA
TCCGCTGTAGTCTGGGCCGCTGCCCTCCTCCCCGCTGGGTGACAGGAGACTGGGGCCAGTGCTC
TGCTCAGTGCGGCCTTGGACAGCAGATGCGCACTGTCCAGTGCCTCTCCTATACTGGACAGGCA
TCTGTTGACTGCCCAGAAGCTGTTCGGCCTCCATCCATGCAGCAGTGTGACAGCAAATGTGATA
GCACCCCTCTCTCCAGTACTGAAGAGTGCAAAGATGTGAACAAAGTGGCATATTGCCCACTGGT
GCTGAAGTTCAAGTTCTGCAGCCGCGCATACTTCAGACAGATGTGTTGTAAGACCTGCCAAGGA
CACTGACCCGCAGAGAGCCAGACAGTCCTGTCATTTCATCATGGAAACCCGTCCGTCAACGAGA
GCCACCCAGAGGAAGCGGATGGATGTTCTTACAAAAGCATTACCCTGTGGAAAATGTAACCACT
GGTCAGCCCCAGCTGACAGGATTTCAATATTATTTTAACTTCTGTGAAGTGGGATTTATTGATC
CAAAGTGCTGGACACGGTATCAGGAGGGAGATCTGAGAGATCCAAACAACACAGGAAACTCACT
TACTGTGGAACGTTTGTGTTCTTTCGAGTAAATCTAACAGCCTGTTTACCTCCTTGGACCATTA
AGATAATTTTTATTATGGACTTAGCAATGACACTGAATCCATTTGTATTTAAGACTGTTTAAAA
TGTAGTTATTATGACTTGGTTAACTATGAAAGTAGAAGAGAGTCAGAATTCTTAAGTCATAGCT
TAAAAATATTTACTACCCTTTATCGCACCACAATAGCACCAAACTTAAATTATAAAATGGGCTT
TAAACTGTAATTTAAGAAACAACTATAAATCAAAAGTAATGAAAGTTTGTATTATTTTTCTCTG
TCCCACTTACTTTCCTTAGGAGTAACCCCTGTTCTGAACACTGCTGTGAGCCCTGTATAAACTC
CAGTAACAGTGAGGGCTTGGCTTGAAGCCGCGCAGCCATTGCTGCAGCTGCGCATGTCTATAAA
CTCAGTGGCCAGCTTGCCGTCGTGCAAGTGAAGCTGAGATTTCCATTAAAACTTTAAGAGAGAA
ACATTTCAATTTCATGCAGAAGCCAGACCTAGGCTATGGCAGAGACTGAAGCACCATGCCCTTT
GCAGCCATCACGTGGGGTGCCGTACTCGAGTCACCCGGACTCCTTAGTGTTTACATCCCCACCA
GCCACAGATCAGCTTCTGCCCTACTGGGCTGTTGCATGCATGGTAAGCTCATGGCGACAATGCC
ATGGGAAAGATAAGCTCGCTCAGTAACAGCCACTTGCTGACAGCACGATGGGTTCCAGATGTCC
CTTCTTTGATATGGTAGAAGGGCATTTATTTATATGAGAGCAAGTGTATACGTGTGTGTATGTG
TGTGTGTGTGCAGACACTCCTGAGTGGGGGAAACAGGTGAGTTTGCTTGCATATAAATGTGCTG
TTTCTGTGAGTTTTAAAGTCGGGGAGGATAACAACCAAAGAAGAAAAGCTCCACGAAGAGAGAT
CACAATATAAATTTAAAAGTCACTTGACCACATCATTTTTACAGATAGTCTCAATGGCAATTAA
ATGTGAAACCCAGTTTCCTGGGCGTGTCAGGTTCTAAAAATCACACTTTACTGAACTGAAATGA
CTAGCCTGGGTCTTCCCATCTCCAAGCTTCACAAGTTGCCATCAAAAGATTCGACAAGTAGATT
TTTAAGGGTACTTGCTTACGCTAATACTTCGTACTTGAACATTTGTAATTTGTAGTAGGTTGTT
GGTGAATGTGCTTTCTGTCGAGCACACCTCCTTAGTCCTTCACATGTGTGCCCCATACACACAG
CATCGTCTAAAACAAACTAAACACCTACATGGTAACAAAGAGAATATTTTCATTTAAGAGCATG
TCTCACTTATCTACCACTGTGCTCTGAAGATAGATTTTGGTGTGTCACCTATGTGGTGACCTTA
GAAAGGCTGTCACCAAAGGCCTCCTCGGCTTCTTACTTGCTATGTACAGTTGGCCTGGATGCTA
GCCCACAGTCCAGTGTGACCAGCCATATCTCATTCCCTGCTTCTTCCTCAGTATCATCCCCACG
TTTTCCAGAGGAGGCCAACACCTCCATATAACTGCCCTGAGAAGACCAGCCTGAGTGCCATCAC
CGCCATTCCAGTAAAGTAAGGCAACACATGGGAGCCTGGCCCAGACTTGAATTCCCTTGGTCCT
TTTCAAAGGACAGTTAACTTGGTGCTAATGTGCCTGGTAAAATATAGGAAGACTGGCGATCGCC
GAGGCAGTTTACACATAGGCTTGCTATCCAGATCTGATATTTTTTAATCAACTTTAATACTAAC
TCATGCTTATATTCCAAGAAGATTTCCTACAGTACTTGTAGAAAGCTGTATTTACCTCACTTGG
AAGCTAACACCGCAAGGGCTGACTCCCAGGTACTGTGCTTAGCTAGGATAAGAGATCAGCCTGA
GCTCTCCACAGGAAGTGCATTGGCATTGCTGACAGGCTACTGCCAGGGGCAGCACAGCCTTCCT
TCTGTGGGGGAAGCAAAGCATGGGTATAACAGGATTCAACATTCTCAAGGAGACCCTGAACTTA
ATCCTGAGCAGGTTACACAGAGCAGAGAGCATCTTCCATAGCACAGCACACCACCACTGCTACT
GCAGCCATCTCTGTCCTACAAGGTGGCAGGGATCAGCAGCGGAGGCCGGGCTGCCTTGGCAAGC
ACTCCAAGTGTTATGAGCTGTATTGACTACTTAGGGTACCAGGGTACCCATGGTTAGGAGCAGT
GTCTGCCACTGGCATAAAGGCCTCCCAAAAAAAGGAATGTTAAATATACCCAAATGATTGAACC
CCTAAAGGCAGGTATGACTTCCCAATAGTCCATTTAATTAGGAATTTATGTATTTGAGTGAATG
TCTTATAGGTATCGTTAATAATACAGAACAAAATTACCTTTGTATTATTGTGACTAGTTGTTGC
TTATTATTTTATACTCGGTATTAATGTGGTACACTGTTACTATTTTTGCTTTTGTAAATTATAT
TCTAATTTATTGCCATGTTTCCTAACACCTGTCCTTTATTCATTCTCCTGCTCGTAATGGAAAT
GAAAGTCATTGCAACACTTGATGGAGTGAAATTTCATACCAGGCACAGATGTTTTTTAACATAG
ATAATTCAGTAAATAATAAAATCTTCAGCTTGTAAAAGTGATGCAGA

hide sequence

RefSeq Acc Id:

XM_017591188 ⟹ XP_017446677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,255,056 - 37,367,077 (+)	NCBI
mRatBN7.2	2	35,521,282 - 35,633,305 (+)	NCBI
Rnor_6.0	2	34,476,116 - 34,589,676 (+)	NCBI

Sequence:

show sequence

CAAAGCGTGACTTTCTTTACCCAGCTGTGGCCCCAGGTCAGGTGTATGATGCTGACGAACAGTG
CCGTTTCCAGTACGGAGCAACGTCCCGCCAATGCAAATATGGGTGTGTAGAGAGCTCTGGTGTC
TCAGCAAAAGCAACCGCTGTGTCACCAACAGTATTCCAGCTGCTGAGGGGACCCTGTGCCAGAC
GGGGAACATTGAAAAGGGGTGGTGTTATCAGGGAGATTGTGTTCCTTTTGGCACTTGGCCCCAG
AGCATAGATGGGGGCTGGGGTTCCTGGTCCCTGTGGGGCGAGTGCAGCAGGACCTGTGGAGGAG
GAGTCTCTTCATCCCTCAGACACTGTGACAGCCCAGCACCTTCTGGAGGTGGAAAATATTGCCT
TGGGGAAAGGAAACGCTACCGCTCTTGCAACACAGATCCATGCCCTTTGGGTTCCCGAGATTTT
CGAGAAAAACAGTGTGCAGACTTTGACAGTATGCCTTTCCGGGGAAAGCATTATAACTGGAAAC
CCTATACTGGAGGTGGGGTAAAACCTTGTGCATTAAACTGCCTGGCTGAAGGCTACAATTTCTA
CACGGAGCGAGCCCCTGCTGTGATAGATGGGACCCAGTGCAATGCGGACTCACTGGACATCTGT
ATCAACGGAGAGTGCAAGCACGTAGGTTGTGATAATATTTTGGGATCTGATGCTAGGGAAGATA
GGTGCCGAGTCTGTGGTGGGGACGGAAGCACCTGTGATGCCATTGAAGGGTTCTTCAATGACTC
ATTGCCCAGAGGAGGTTATTTGGAAGTGGTTCAGATACCAAGAGGCTCTGTTCACATTGAAGTA
AGAGAAGTTTCCATGTCAAAAAATTACATTGCTTTAAAATCTGAAGGGGATGATTACTATATTA
ATGGTGCCTGGACTATTGACTGGCCTAGGAAATTTGATGTTTCTGGGACAGCTTTTCACTACAA
GAGACCAACAGATGAACCAGAATCCTTGGAAGCTCTGGGACCCACCTCTGAGAACCTCATTGTA
ATGGTTCTCCTCCAAGAACAGAATTTGGGAATTAGGTACAAGTTCAATGTTCCCATCGTTCGTA
CTGGCAGTGGAGATAATGAAGTTGGCTTCATGTGGACTCACCAGCCCTGGGCCGAGTGCTCTGC
TACTTGTGCTGGAGGTGTCCAAAAACAAGAAGTGGTCTGTAAAAGATTGGATGACAACTCCATT
GTCCAGAACAATTTCTGTGACCCTGACAGTAAACCACCGGAAAATCAAAGAGCCTGCAGCACTG
AGCCTTGCCCACCTGAATGGTTCATTGGTGACTGGCTAGAGTGCAGCAAGACTTGTGATGGTGG
GATGCGCACAAGGGCCGTGCTCTGCATCAGGAAAGTTGGACCTTCTGAGGAGGAAACACTGGAC
TACAGTGACTGTTTAACACACCGGCCTGTGGAGAAAGAGTCCTGCAACAACCAGTCATGTCCAC
CTCAGTGGGTAGCTTTGGACTGGTCTGAATGTACTCCAAAATGTGGTTCAGGATTCAAGCATCG
GATTGTTCTGTGCAAGAGCAGTGACCTTTCTAAAACGTTCCCAGCTGCGCAATGTCCAGAGGAG
AGCAAGCCTCCTGCTCGCATCCGCTGTAGTCTGGGCCGCTGCCCTCCTCCCCGCTGGGTGACAG
GAGACTGGGGCCAGTGCTCTGCTCAGTGCGGCCTTGGACAGCAGATGCGCACTGTCCAGTGCCT
CTCCTATACTGGACAGGCATCTGTTGACTGCCCAGAAGCTGTTCGGCCTCCATCCATGCAGCAG
TGTGACAGCAAATGTGATAGCACCCCTCTCTCCAGTACTGAAGAGTGCAAAGATGTGAACAAAG
TGGCATATTGCCCACTGGTGCTGAAGTTCAAGTTCTGCAGCCGCGCATACTTCAGACAGATGTG
TTGTAAGACCTGCCAAGGACACTGACCCGCAGAGAGCCAGACAGTCCTGTCATTTCATCATGGA
AACCCGTCCGTCAACGAGAGCCACCCAGAGGAAGCGGATGGATGTTCTTACAAAAGCATTACCC
TGTGGAAAATGTAACCACTGGTCAGCCCCAGCTGACAGGATTTCAATATTATTTTAACTTCTGT
GAAGTGGGATTTATTGATCCAAAGTGCTGGACACGGTATCAGGAGGGAGATCTGAGAGATCCAA
ACAACACAGGAAACTCACTTACTGTGGAACGTTTGTGTTCTTTCGAGTAAATCTAACAGCCTGT
TTACCTCCTTGGACCATTAAGATAATTTTTATTATGGACTTAGCAATGACACTGAATCCATTTG
TATTTAAGACTGTTTAAAATGTAGTTATTATGACTTGGTTAACTATGAAAGTAGAAGAGAGTCA
GAATTCTTAAGTCATAGCTTAAAAATATTTACTACCCTTTATCGCACCACAATAGCACCAAACT
TAAATTATAAAATGGGCTTTAAACTGTAATTTAAGAAACAACTATAAATCAAAAGTAATGAAAG
TTTGTATTATTTTTCTCTGTCCCACTTACTTTCCTTAGGAGTAACCCCTGTTCTGAACACTGCT
GTGAGCCCTGTATAAACTCCAGTAACAGTGAGGGCTTGGCTTGAAGCCGCGCAGCCATTGCTGC
AGCTGCGCATGTCTATAAACTCAGTGGCCAGCTTGCCGTCGTGCAAGTGAAGCTGAGATTTCCA
TTAAAACTTTAAGAGAGAAACATTTCAATTTCATGCAGAAGCCAGACCTAGGCTATGGCAGAGA
CTGAAGCACCATGCCCTTTGCAGCCATCACGTGGGGTGCCGTACTCGAGTCACCCGGACTCCTT
AGTGTTTACATCCCCACCAGCCACAGATCAGCTTCTGCCCTACTGGGCTGTTGCATGCATGGTA
AGCTCATGGCGACAATGCCATGGGAAAGATAAGCTCGCTCAGTAACAGCCACTTGCTGACAGCA
CGATGGGTTCCAGATGTCCCTTCTTTGATATGGTAGAAGGGCATTTATTTATATGAGAGCAAGT
GTATACGTGTGTGTATGTGTGTGTGTGTGCAGACACTCCTGAGTGGGGGAAACAGGTGAGTTTG
CTTGCATATAAATGTGCTGTTTCTGTGAGTTTTAAAGTCGGGGAGGATAACAACCAAAGAAGAA
AAGCTCCACGAAGAGAGATCACAATATAAATTTAAAAGTCACTTGACCACATCATTTTTACAGA
TAGTCTCAATGGCAATTAAATGTGAAACCCAGTTTCCTGGGCGTGTCAGGTTCTAAAAATCACA
CTTTACTGAACTGAAATGACTAGCCTGGGTCTTCCCATCTCCAAGCTTCACAAGTTGCCATCAA
AAGATTCGACAAGTAGATTTTTAAGGGTACTTGCTTACGCTAATACTTCGTACTTGAACATTTG
TAATTTGTAGTAGGTTGTTGGTGAATGTGCTTTCTGTCGAGCACACCTCCTTAGTCCTTCACAT
GTGTGCCCCATACACACAGCATCGTCTAAAACAAACTAAACACCTACATGGTAACAAAGAGAAT
ATTTTCATTTAAGAGCATGTCTCACTTATCTACCACTGTGCTCTGAAGATAGATTTTGGTGTGT
CACCTATGTGGTGACCTTAGAAAGGCTGTCACCAAAGGCCTCCTCGGCTTCTTACTTGCTATGT
ACAGTTGGCCTGGATGCTAGCCCACAGTCCAGTGTGACCAGCCATATCTCATTCCCTGCTTCTT
CCTCAGTATCATCCCCACGTTTTCCAGAGGAGGCCAACACCTCCATATAACTGCCCTGAGAAGA
CCAGCCTGAGTGCCATCACCGCCATTCCAGTAAAGTAAGGCAACACATGGGAGCCTGGCCCAGA
CTTGAATTCCCTTGGTCCTTTTCAAAGGACAGTTAACTTGGTGCTAATGTGCCTGGTAAAATAT
AGGAAGACTGGCGATCGCCGAGGCAGTTTACACATAGGCTTGCTATCCAGATCTGATATTTTTT
AATCAACTTTAATACTAACTCATGCTTATATTCCAAGAAGATTTCCTACAGTACTTGTAGAAAG
CTGTATTTACCTCACTTGGAAGCTAACACCGCAAGGGCTGACTCCCAGGTACTGTGCTTAGCTA
GGATAAGAGATCAGCCTGAGCTCTCCACAGGAAGTGCATTGGCATTGCTGACAGGCTACTGCCA
GGGGCAGCACAGCCTTCCTTCTGTGGGGGAAGCAAAGCATGGGTATAACAGGATTCAACATTCT
CAAGGAGACCCTGAACTTAATCCTGAGCAGGTTACACAGAGCAGAGAGCATCTTCCATAGCACA
GCACACCACCACTGCTACTGCAGCCATCTCTGTCCTACAAGGTGGCAGGGATCAGCAGCGGAGG
CCGGGCTGCCTTGGCAAGCACTCCAAGTGTTATGAGCTGTATTGACTACTTAGGGTACCAGGGT
ACCCATGGTTAGGAGCAGTGTCTGCCACTGGCATAAAGGCCTCCCAAAAAAAGGAATGTTAAAT
ATACCCAAATGATTGAACCCCTAAAGGCAGGTATGACTTCCCAATAGTCCATTTAATTAGGAAT
TTATGTATTTGAGTGAATGTCTTATAGGTATCGTTAATAATACAGAACAAAATTACCTTTGTAT
TATTGTGACTAGTTGTTGCTTATTATTTTATACTCGGTATTAATGTGGTACACTGTTACTATTT
TTGCTTTTGTAAATTATATTCTAATTTATTGCCATGTTTCCTAACACCTGTCCTTTATTCATTC
TCCTGCTCGTAATGGAAATGAAAGTCATTGCAACACTTGATGGAGTGAAATTTCATACCAGGCA
CAGATGTTTTTTAACATAGATAATTCAGTAAATAATAAAATCTTCAGCTTGTAAAAGTGATGCA
GA

hide sequence

RefSeq Acc Id:

XM_039102547 ⟹ XP_038958475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,155,260 - 37,345,642 (+)	NCBI
mRatBN7.2	2	35,421,483 - 35,611,875 (+)	NCBI

RefSeq Acc Id:

XM_039102548 ⟹ XP_038958476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,155,260 - 37,324,391 (+)	NCBI
mRatBN7.2	2	35,421,483 - 35,590,609 (+)	NCBI

RefSeq Acc Id:

XM_039102549 ⟹ XP_038958477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,183,676 - 37,367,077 (+)	NCBI
mRatBN7.2	2	35,449,909 - 35,633,305 (+)	NCBI

RefSeq Acc Id:

XM_039102550 ⟹ XP_038958478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,183,758 - 37,367,077 (+)	NCBI
mRatBN7.2	2	35,449,982 - 35,633,305 (+)	NCBI

RefSeq Acc Id:

XM_039102551 ⟹ XP_038958479

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,183,676 - 37,367,077 (+)	NCBI
mRatBN7.2	2	35,449,909 - 35,633,305 (+)	NCBI

RefSeq Acc Id:

XM_039102552 ⟹ XP_038958480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,241,983 - 37,367,077 (+)	NCBI
mRatBN7.2	2	35,508,209 - 35,633,305 (+)	NCBI

RefSeq Acc Id:

XM_039102553 ⟹ XP_038958481

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,155,260 - 37,308,841 (+)	NCBI
mRatBN7.2	2	35,421,483 - 35,575,064 (+)	NCBI

RefSeq Acc Id:

XM_063282029 ⟹ XP_063138099

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,215,447 - 37,367,077 (+)	NCBI

RefSeq Acc Id:

XR_005500311

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	37,155,260 - 37,336,708 (+)	NCBI
mRatBN7.2	2	35,421,483 - 35,602,936 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102014	(Get FASTA)	NCBI Sequence Viewer
	XP_017446675	(Get FASTA)	NCBI Sequence Viewer
	XP_017446676	(Get FASTA)	NCBI Sequence Viewer
	XP_017446677	(Get FASTA)	NCBI Sequence Viewer
	XP_038958475	(Get FASTA)	NCBI Sequence Viewer
	XP_038958476	(Get FASTA)	NCBI Sequence Viewer
	XP_038958477	(Get FASTA)	NCBI Sequence Viewer
	XP_038958478	(Get FASTA)	NCBI Sequence Viewer
	XP_038958479	(Get FASTA)	NCBI Sequence Viewer
	XP_038958480	(Get FASTA)	NCBI Sequence Viewer
	XP_038958481	(Get FASTA)	NCBI Sequence Viewer
	XP_063138099	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM10267	(Get FASTA)	NCBI Sequence Viewer
	EDM10268	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016997
	ENSRNOP00000016997.4

RefSeq Acc Id:

XP_017446675 ⟸ XM_017591186

- Peptide Label:

isoform X5

- Sequence:

show sequence

MCEPERSCSINEDIGLGSAFTIAHEIGHNFGMNHDGIGNSCGTKGHEAAKLMAAHITANTNPFS
WSACSRDYITSFLDSGRGTCLDNEPPKRDFLYPAVAPGQVYDADEQCRFQYGATSRQCKYGEVC
RELWCLSKSNRCVTNSIPAAEGTLCQTGNIEKGWCYQGDCVPFGTWPQSIDGGWGSWSLWGECS
RTCGGGVSSSLRHCDSPAPSGGGKYCLGERKRYRSCNTDPCPLGSRDFREKQCADFDSMPFRGK
HYNWKPYTGGGVKPCALNCLAEGYNFYTERAPAVIDGTQCNADSLDICINGECKHVGCDNILGS
DAREDRCRVCGGDGSTCDAIEGFFNDSLPRGGYLEVVQIPRGSVHIEVREVSMSKNYIALKSEG
DDYYINGAWTIDWPRKFDVSGTAFHYKRPTDEPESLEALGPTSENLIVMVLLQEQNLGIRYKFN
VPIVRTGSGDNEVGFMWTHQPWAECSATCAGGVQKQEVVCKRLDDNSIVQNNFCDPDSKPPENQ
RACSTEPCPPEWFIGDWLECSKTCDGGMRTRAVLCIRKVGPSEEETLDYSDCLTHRPVEKESCN
NQSCPPQWVALDWSECTPKCGSGFKHRIVLCKSSDLSKTFPAAQCPEESKPPARIRCSLGRCPP
PRWVTGDWGQCSAQCGLGQQMRTVQCLSYTGQASVDCPEAVRPPSMQQCDSKCDSTPLSSTEEC
KDVNKVAYCPLVLKFKFCSRAYFRQMCCKTCQGH

hide sequence

RefSeq Acc Id:

XP_017446676 ⟸ XM_017591187

- Peptide Label:

isoform X7

- Sequence:

show sequence

MPASDVFRRRLCSSGRGTCLDNEPPKRDFLYPAVAPGQVYDADEQCRFQYGATSRQCKYGEVCR
ELWCLSKSNRCVTNSIPAAEGTLCQTGNIEKGWCYQGDCVPFGTWPQSIDGGWGSWSLWGECSR
TCGGGVSSSLRHCDSPAPSGGGKYCLGERKRYRSCNTDPCPLGSRDFREKQCADFDSMPFRGKH
YNWKPYTGGGVKPCALNCLAEGYNFYTERAPAVIDGTQCNADSLDICINGECKHVGCDNILGSD
AREDRCRVCGGDGSTCDAIEGFFNDSLPRGGYLEVVQIPRGSVHIEVREVSMSKNYIALKSEGD
DYYINGAWTIDWPRKFDVSGTAFHYKRPTDEPESLEALGPTSENLIVMVLLQEQNLGIRYKFNV
PIVRTGSGDNEVGFMWTHQPWAECSATCAGGVQKQEVVCKRLDDNSIVQNNFCDPDSKPPENQR
ACSTEPCPPEWFIGDWLECSKTCDGGMRTRAVLCIRKVGPSEEETLDYSDCLTHRPVEKESCNN
QSCPPQWVALDWSECTPKCGSGFKHRIVLCKSSDLSKTFPAAQCPEESKPPARIRCSLGRCPPP
RWVTGDWGQCSAQCGLGQQMRTVQCLSYTGQASVDCPEAVRPPSMQQCDSKCDSTPLSSTEECK
DVNKVAYCPLVLKFKFCSRAYFRQMCCKTCQGH

hide sequence

RefSeq Acc Id:

XP_017446677 ⟸ XM_017591188

- Peptide Label:

isoform X8

- Sequence:

show sequence

MQIWVCRELWCLSKSNRCVTNSIPAAEGTLCQTGNIEKGWCYQGDCVPFGTWPQSIDGGWGSWS
LWGECSRTCGGGVSSSLRHCDSPAPSGGGKYCLGERKRYRSCNTDPCPLGSRDFREKQCADFDS
MPFRGKHYNWKPYTGGGVKPCALNCLAEGYNFYTERAPAVIDGTQCNADSLDICINGECKHVGC
DNILGSDAREDRCRVCGGDGSTCDAIEGFFNDSLPRGGYLEVVQIPRGSVHIEVREVSMSKNYI
ALKSEGDDYYINGAWTIDWPRKFDVSGTAFHYKRPTDEPESLEALGPTSENLIVMVLLQEQNLG
IRYKFNVPIVRTGSGDNEVGFMWTHQPWAECSATCAGGVQKQEVVCKRLDDNSIVQNNFCDPDS
KPPENQRACSTEPCPPEWFIGDWLECSKTCDGGMRTRAVLCIRKVGPSEEETLDYSDCLTHRPV
EKESCNNQSCPPQWVALDWSECTPKCGSGFKHRIVLCKSSDLSKTFPAAQCPEESKPPARIRCS
LGRCPPPRWVTGDWGQCSAQCGLGQQMRTVQCLSYTGQASVDCPEAVRPPSMQQCDSKCDSTPL
SSTEECKDVNKVAYCPLVLKFKFCSRAYFRQMCCKTCQGH

hide sequence

Ensembl Acc Id:

ENSRNOP00000064275 ⟸ ENSRNOT00000072577

Ensembl Acc Id:

ENSRNOP00000016997 ⟸ ENSRNOT00000016997

RefSeq Acc Id:	XP_038958475 ⟸ XM_039102547
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958476 ⟸ XM_039102548
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038958481 ⟸ XM_039102553
- Peptide Label:	isoform X9

RefSeq Acc Id:	NP_001102014 ⟸ NM_001108544
- UniProtKB:	D4A065 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038958477 ⟸ XM_039102549
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038958479 ⟸ XM_039102551
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038958478 ⟸ XM_039102550
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038958480 ⟸ XM_039102552
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063138099 ⟸ XM_063282029
- Peptide Label:	isoform X6

Protein Domains

Peptidase M12B PLAC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A065-F1-model_v2	AlphaFold	D4A065	1-1117	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307678	AgrOrtholog
BioCyc Gene	G2FUF-54551	BioCyc
Ensembl Genes	ENSRNOG00000012655	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016997	ENTREZGENE
	ENSRNOT00000016997.9	UniProtKB/TrEMBL
Gene3D-CATH	2.20.100.10	UniProtKB/TrEMBL
	2.60.120.830	UniProtKB/TrEMBL
	3.40.1620.60	UniProtKB/TrEMBL
	3.40.390.10	UniProtKB/TrEMBL
InterPro	ADAM_CR_2	UniProtKB/TrEMBL
	ADAM_spacer1	UniProtKB/TrEMBL
	ADAMTS/ADAMTS-like	UniProtKB/TrEMBL
	ADAMTS_ADAMTS-like	UniProtKB/TrEMBL
	ADAMTS_CR_3	UniProtKB/TrEMBL
	MetalloPept_cat_dom	UniProtKB/TrEMBL
	Peptidase_M12B	UniProtKB/TrEMBL
	Peptidase_M12B_N	UniProtKB/TrEMBL
	PLAC	UniProtKB/TrEMBL
	Thrombospondin_1_rpt	UniProtKB/TrEMBL
	TSP1_rpt_sf	UniProtKB/TrEMBL
NCBI Gene	361886	ENTREZGENE
PANTHER	A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 6	UniProtKB/TrEMBL
	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	UniProtKB/TrEMBL
Pfam	ADAM_CR_2	UniProtKB/TrEMBL
	ADAM_CR_3	UniProtKB/TrEMBL
	ADAM_spacer1	UniProtKB/TrEMBL
	Pep_M12B_propep	UniProtKB/TrEMBL
	PLAC	UniProtKB/TrEMBL
	Reprolysin	UniProtKB/TrEMBL
	TSP1_ADAMTS	UniProtKB/TrEMBL
	TSP_1	UniProtKB/TrEMBL
PhenoGen	Adamts6	PhenoGen
PRINTS	ADAMTSFAMILY	UniProtKB/TrEMBL
PROSITE	ADAM_MEPRO	UniProtKB/TrEMBL
	PLAC	UniProtKB/TrEMBL
	TSP1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012655	RatGTEx
SMART	TSP1	UniProtKB/TrEMBL
Superfamily-SCOP	Metalloproteases ('zincins'), catalytic domain	UniProtKB/TrEMBL
	TSP1	UniProtKB/TrEMBL
UniProt	D4A065	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-18	Adamts6	ADAM metallopeptidase with thrombospondin type 1 motif, 6	Adamts6	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-10	Adamts6	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	Adamts6	a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-26	Adamts6	a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 6	Adamts6_predicted	a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 6 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Adamts6_predicted	a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 6 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar