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Gene: Sytl2 (synaptotagmin-like 2) Rattus norvegicus

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Symbol:

Sytl2

Name:

synaptotagmin-like 2

RGD ID:

1307647

Description:

Predicted to enable neurexin family protein binding activity; phosphatase binding activity; and phospholipid binding activity. Predicted to be involved in positive regulation of mucus secretion and vesicle docking involved in exocytosis. Predicted to act upstream of or within protein localization to plasma membrane. Predicted to be located in melanosome and membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL2 (synaptotagmin like 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC361604; MGC189337; synaptotagmin-like protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYTL2 (synaptotagmin like 2)	RGD	RGD
Mus musculus (house mouse):	Sytl2 (synaptotagmin-like 2)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Sytl2 (synaptotagmin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SYTL2 (synaptotagmin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYTL2 (synaptotagmin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sytl2 (synaptotagmin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYTL2 (synaptotagmin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SYTL2 (synaptotagmin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sytl2 (synaptotagmin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sytl2 (synaptotagmin like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SYTL2 (synaptotagmin like 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SYTL2 (synaptotagmin like 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sytl2 (synaptotagmin-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sytl2 (synaptotagmin-like 2)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sytl2b (synaptotagmin-like 2b)	Alliance	DIOPT (OrthoFinder\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sytl2a (synaptotagmin-like 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Danio rerio (zebrafish):	sytl2a (synaptotagmin-like 2a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sytl2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sytl2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	153,685,403 - 153,791,758 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	153,665,327 - 153,791,756 (+)	Ensembl				GRCr8
mRatBN7.2	1	144,272,870 - 144,379,310 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	144,273,360 - 144,379,222 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	152,196,100 - 152,302,039 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	159,372,674 - 159,480,256 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	152,246,593 - 152,354,171 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	156,334,298 - 156,440,327 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0	1	154,536,592 - 154,599,515 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	156,335,279 - 156,354,353 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	1	154,579,949 - 154,599,430 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	160,800,567 - 160,863,654 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	146,977,959 - 147,084,664 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	142,493,600 - 142,599,739 (+)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

angioedema (ISO)

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP,ISO)

dioxygen (ISO)

diuron (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

entinostat (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

genistein (ISO)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

ketamine (EXP)

L-methionine (ISO)

leflunomide (EXP)

methylmercury chloride (ISO)

mitoxantrone (ISO)

N-methyl-4-phenylpyridinium (EXP)

nickel sulfate (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

panobinostat (ISO)

paracetamol (EXP,ISO)

PCB138 (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

propanal (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (EXP)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

sotorasib (ISO)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trametinib (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

exocytosis (IBA,IEA,ISO)

intracellular protein transport (IEA)

positive regulation of mucus secretion (ISO)

protein localization to plasma membrane (ISO)

vesicle docking involved in exocytosis (ISO)

Cellular Component

cytoplasm (ISO)

cytoplasmic vesicle (IEA)

exocytic vesicle (IBA,ISO)

melanosome (ISO)

membrane (IEA,ISO)

plasma membrane (IBA,IEA,ISO)

Molecular Function

neurexin family protein binding (IBA,ISO)

phosphatase binding (ISO)

phosphatidylinositol-4,5-bisphosphate binding (ISO)

phosphatidylserine binding (ISO)

protein binding (ISO)

small GTPase binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:11243866	PMID:11773082	PMID:12477932	PMID:16716193	PMID:17182843	PMID:18266782	PMID:18812475	PMID:19389623	PMID:24284068

Genomics

Comparative Map Data

Sytl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	153,685,403 - 153,791,758 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	153,665,327 - 153,791,756 (+)	Ensembl				GRCr8
mRatBN7.2	1	144,272,870 - 144,379,310 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	144,273,360 - 144,379,222 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	152,196,100 - 152,302,039 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	159,372,674 - 159,480,256 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	152,246,593 - 152,354,171 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	156,334,298 - 156,440,327 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0	1	154,536,592 - 154,599,515 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	156,335,279 - 156,354,353 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	1	154,579,949 - 154,599,430 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	160,800,567 - 160,863,654 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	146,977,959 - 147,084,664 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	142,493,600 - 142,599,739 (+)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

SYTL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	85,694,229 - 85,854,870 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	85,694,224 - 85,811,182 (-)	Ensembl			hg38	GRCh38
GRCh37	11	85,405,272 - 85,565,913 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	85,082,912 - 85,146,692 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	85,082,914 - 85,107,859	NCBI
Celera	11	82,714,568 - 82,831,481 (-)	NCBI		Celera
Cytogenetic Map	11	q14.1	NCBI
HuRef	11	81,702,610 - 81,819,526 (-)	NCBI		HuRef
CHM1_1	11	85,290,075 - 85,406,976 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	85,630,917 - 85,791,555 (-)	NCBI		T2T-CHM13v2.0

Sytl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	89,951,421 - 90,059,927 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	89,951,460 - 90,059,927 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	90,302,211 - 90,410,719 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	90,302,252 - 90,410,719 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	97,497,209 - 97,558,949 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	90,223,891 - 90,285,897 (+)	NCBI		MGSCv36	mm8
Celera	7	87,675,751 - 87,737,560 (+)	NCBI		Celera
Cytogenetic Map	7	E1	NCBI
cM Map	7	50.54	NCBI

Sytl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	7,104,268 - 7,174,001 (+)	Ensembl
ChiLan1.0	NW_004955414	7,104,239 - 7,172,791 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYTL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	86,616,996 - 86,773,315 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	87,664,954 - 87,823,384 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	80,749,861 - 80,866,479 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	84,358,095 - 84,474,422 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	84,358,155 - 84,421,509 (-)	Ensembl			panPan2	panpan1.1

SYTL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	13,639,054 - 13,756,332 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	13,688,338 - 13,755,414 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	13,505,757 - 13,623,017 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	13,819,767 - 13,937,016 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	13,819,798 - 13,937,013 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	13,608,437 - 13,725,706 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	13,680,690 - 13,797,966 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	13,733,418 - 13,850,744 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sytl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	71,978,205 - 72,082,188 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936498	13,577,795 - 13,681,808 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936498	13,577,839 - 13,681,782 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYTL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	19,617,293 - 19,734,633 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	19,617,287 - 19,763,439 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	21,887,423 - 22,023,108 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYTL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	76,937,076 - 77,061,895 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666043	48,660,500 - 48,785,835 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sytl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624845	4,092,206 - 4,220,599 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sytl2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	110,767,209 - 110,830,250 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sytl2
690 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	507
Count of miRNA genes:	222
Interacting mature miRNAs:	283
Transcripts:	ENSRNOT00000042163, ENSRNOT00000045048
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61442	Strs1	Sensitivity to stroke QTL 1	7.4		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	1	131179947	176179947	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	137611478	182611478	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	153679879	198679879	Rat
1598866	Bp287	Blood pressure QTL 287	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	130419227	175419227	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	132760429	191848948	Rat
631684	Bp117	Blood pressure QTL 117	8.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	120082258	165082258	Rat
9590300	Scort16	Serum corticosterone level QTL 16	4.39	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	112521556	157521556	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	153679879	205813246	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
8694166	Bw147	Body weight QTL 147	6.83	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	1	153788989	198788989	Rat
631199	Cm23	Cardiac mass QTL 23	4.6	0.0004	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	142582336	182383862	Rat
1598850	Bp297	Blood pressure QTL 297	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	130419227	175419227	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	139442053	223964440	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
152025232	Bw192	Body weight QTL 192	3.93		body mass (VT:0001259)		1	127329268	206393015	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	99645382	182701046	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	109493780	193400781	Rat
2317833	Alcrsp19	Alcohol response QTL 19	12.4	0.001	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	110389869	155389869	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
631202	Gluco13	Glucose level QTL 13		0.0001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	141173126	169168317	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
631206	Niddm40	Non-insulin dependent diabetes mellitus QTL 40			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	140833106	185833106	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	153679879	232414077	Rat
1641897	Alcrsp1	Alcohol response QTL 1			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	110389869	155389869	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	116099376	191260518	Rat
2293140	Bp313	Blood pressure QTL 313			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	131243790	176243790	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat
737974	Bp161	Blood pressure QTL 161		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	129182274	174182274	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	132760429	191848948	Rat
631496	Bp97	Blood pressure QTL 97	3.08		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	115183611	176289080	Rat
634315	Niddm45	Non-insulin dependent diabetes mellitus QTL 45	7.16		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	153680016	182383862	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
61379	Bp44	Blood pressure QTL 44	19.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	153680016	183564652	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	102780511	182384005	Rat
6893347	Bw98	Body weight QTL 98	0.2	0.53	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	111949780	210707719	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	128019551	173019551	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
6893361	Bw104	Body weight QTL 104	0.59	0.27	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	139442053	223964440	Rat
738006	Anxrr14	Anxiety related response QTL 14	4	0.00035	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	140048073	185048073	Rat
1558645	Bw55	Body weight QTL 55	3.2	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	111949780	210707719	Rat
634348	Bp138	Blood pressure QTL 138			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	135021436	178317588	Rat
8694370	Bw154	Body weight QTL 154	8.91	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	1	112521556	157521556	Rat
738028	Anxrr12	Anxiety related response QTL 12	4.9	0.00001	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	140048073	185048073	Rat
1354623	Rf46	Renal function QTL 46	3.8		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	1	111949780	160574007	Rat
1576310	Schws2	Schwannoma susceptibility QTL 2		0.029	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	1	153788989	198788989	Rat
631654	Bp107	Blood pressure QTL 107			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	135021436	180021436	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	132760429	191190115	Rat
152025212	Bw190	Body weight QTL 190	5.7		body mass (VT:0001259)		1	132966869	206393015	Rat
631548	Bp88	Blood pressure QTL 88	5	0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	140915717	185915717	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	132760429	191848948	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	111949780	228180370	Rat
7411599	Foco11	Food consumption QTL 11	18.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	1	153788989	198788989	Rat

Markers in Region

D1Mit21

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	144,314,913 - 144,315,053 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	144,314,913 - 144,315,053 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	154,535,070 - 154,535,209	NCBI	Rnor6.0
Rnor_6.0	1	156,399,063 - 156,399,202	NCBI	Rnor6.0
Rnor_5.0	1	162,645,185 - 162,645,324	UniSTS	Rnor5.0
Rnor_5.0	1	160,799,045 - 160,799,184	UniSTS	Rnor5.0
RGSC_v3.4	1	147,020,341 - 147,020,480	UniSTS	RGSC3.4
RGSC_v3.4	1	147,020,340 - 147,020,480	RGD	RGSC3.4
Celera	1	142,535,144 - 142,535,283	UniSTS
RGSC_v3.1	1	147,098,747 - 147,098,886	RGD
RH 3.4 Map	1	1125.8	RGD
RH 3.4 Map	1	1125.8	UniSTS
Cytogenetic Map	1	q32	UniSTS

RH140314

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	144,378,823 - 144,378,964 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	144,378,823 - 144,378,964 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	156,334,640 - 156,334,780	NCBI	Rnor6.0
Rnor_6.0	1	154,599,033 - 154,599,173	NCBI	Rnor6.0
Rnor_5.0	1	160,863,008 - 160,863,148	UniSTS	Rnor5.0
Rnor_5.0	1	162,580,762 - 162,580,902	UniSTS	Rnor5.0
RGSC_v3.4	1	147,084,260 - 147,084,400	UniSTS	RGSC3.4
Celera	1	142,599,257 - 142,599,397	UniSTS
RH 3.4 Map	1	1129.0	UniSTS
Cytogenetic Map	1	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
24	12	74	198	125	123	77	98	77	12	418	217	11	165	92	112	46	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003753316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003753317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003753318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006223409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK842035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000042163 ⟹ ENSRNOP00000039142

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	156,335,279 - 156,354,353 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000045048 ⟹ ENSRNOP00000048585

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	153,774,648 - 153,791,756 (+)	Ensembl
mRatBN7.2 Ensembl	1	144,362,125 - 144,379,222 (+)	Ensembl
Rnor_6.0 Ensembl	1	154,579,949 - 154,599,430 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103814 ⟹ ENSRNOP00000077270

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	153,685,978 - 153,791,755 (+)	Ensembl
mRatBN7.2 Ensembl	1	144,273,360 - 144,379,221 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114461 ⟹ ENSRNOP00000096638

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	153,685,886 - 153,791,755 (+)	Ensembl
mRatBN7.2 Ensembl	1	144,273,360 - 144,379,221 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137733 ⟹ ENSRNOP00000110457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	153,665,327 - 153,791,755 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153378 ⟹ ENSRNOP00000103847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	153,685,886 - 153,791,755 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163984 ⟹ ENSRNOP00000108929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	153,665,327 - 153,791,755 (+)	Ensembl

RefSeq Acc Id:

NM_001108492 ⟹ NP_001101962

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,685,886 - 153,791,758 (+)	NCBI
mRatBN7.2	1	144,273,360 - 144,379,224 (+)	NCBI

RefSeq Acc Id:

XM_008759651 ⟹ XP_008757873

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,685,406 - 153,791,758 (+)	NCBI
mRatBN7.2	1	144,272,872 - 144,379,310 (+)	NCBI
Rnor_6.0	1	156,334,298 - 156,440,326 (-)	NCBI

Sequence:

show sequence

GGCGAGCCCTGTGCTCCGGGAAGGTCCTGCGCTGCCCTCCCCTCCGCCCTCCCCAAACAGCAGC
GGGTGACACCTGGGCGGCGCAACAGGCTGCCAGCGCCGGGCGGCAGAGAGAGGCTGGCAGCTCC
AAGGAGGTCGAGGATGCACCAAGGAGTCTGCTGCTCAAGATGGTGATGAGCATGGAGAGAGACT
GTGTCTAAGACAGGTCCAGAGAGGGTGCACTGAAGAAATTCTGCTGAAGGCGTATACAAGGCAT
GCAGCATCCTCCTGAGACCTGTTCATCCCATAGACCACTGCTACCTCAAGGAACCTTGCTCTTA
TGATTTTGATGTCATCTGCCTAAAACTTTTGTGGATTCCAGTCAAGACTTTTACTACCAAATAA
GATACCATTTAATTTTGCATCCTGTAATCATCCTGGCTGTGGTCTCAGCTCTTTTTCCCTGAGA
ACCTCAAGCTACATTTGTTTGTTACAATTGTTCCTTTTGTGTAAATTGTGCTCCAAAATGATCG
ACTTAAGTTTCCTGACAGAGGAGGAACAAGATGCCATCTTAAAGGTTCTGCAGAGGGATGCTGC
CCTGAAGAGGGCTGAAGAGGAGAGGGTCAGACACTTGCCTGAAAAAATTAAGGATGACCAACAA
CTAAAGAACATGAGTGGCCAATGGTTTTATGAAGCTAAGGCAAAAAGACACAAGGACAAAATCC
ATGGTGCTGACATCATCAGAGCATCCATGAGAAGGAAGAGACTCCCAGCGGCAGCTGAGCAGAA
GAAGGACACAGCAATGAGGACAAAGGAGAGCTGGGTGAATAATGTCAACAAAGACGCTTCCCTT
CCCCCAGAGCTAGCTGTTGTGGAAGAGCCAGCAGATGACACAGGTCCAGCAGGCCCAAGTTCCA
GTGTGGTGGATCCAGCTTCCAGTGCGATTGAAAGGTCCCAGGAAAATACGAGGACTCCAGCTGT
GTCTCTGCCCAAGCAAAGGAAGAATCCATTCGACAGCCTCGAGACGCCAGAAGATCTCTCATCG
CAACAAACCAAAACCAAGCAGTCAAAAACTGGAAAAGCTGGTTTATTTCAGATTTCAAAAGAGG
GTGGGTTGTCAGAATCAAAAGAAAAGCCATCTATTCCAGATATGTCATGTCAAAAGTCAGAGAA
ACCAAAGCAACCTGTATCCATGGAGACAGAAAATGCGTCTCTTATCAAAGCTCCAATCCCCAAA
GCCAGAAAACTGATCTACAAATCAAATGACTTAAAGAACGACGATTACCTGTCTTTTGCTGGAC
AAAGGAGGGACTCCCTGAATGCGAGAGGGACTCCAAGAGGGATCCTAAAGCGCAACTCCAGTTC
CAGTAGCACGGACTCAGAGACTCTCCGTTTAAATTACAACTTGGATCCGAAAAGCAAAATCCTA
TCACCTGGCCTCACCATCCATGAGAGAATTTCTGAAAAGGAACATTCTTTAGATGATGACTCTT
GCACAAACTCACTTGAGCCCTTAAAGCATGTGAGATTCTCTGCCGTGAAGAATGACCTTCCACA
GAGTCCTAGACCTGTCCTTGGCCAGGAAGTAGGAGAATTTACTGTTTTAGAATCTGACAGGTTG
CAAAATGGAACTGAAGATACAGGGGACATAGATGAGTTTCAGGATCACCCAGAGTTCTCCCACA
GAAAACCTTTGTCTCTTTATCAGTCAGTGACAAACCCAAGAATTTCGGAAAGGGAAACAGAACA
GCCGATGTCTTCTGGGTCTATTCCAAGTGAGGAGATCTCTTGCCATTCAGACATTCTACCCACA
AGACCTCAGTGTGTGGAGAGTTCATCCATCATCAGTGAACAAGATAAATCATCACATTTTACAA
AGCTTCAATCAGAAATGTCCAAAAGCCCTGAGGATGAACTGACTCAGTGTGTTGAGCCTGAGCC
ATCCCAGACATCAGACCACAGTTTTAGAGACCATCGGCAAGGTAAGCCTCTTCTCACGGCTCTC
ACTGATCAGACAGCCTCACCCGTGGGTCCATGTGCTACAGAGATAAGGAAGACAACTGATGATT
CCATATCTAAAGTCCTAGACTGGTTTAATCGAAGTTCTCATACAGAGGACAGTACATCAACTCT
CCAACATCTTCAAGGACTAGATCTCAGAGAGCAAACAGACTCGAGAGCACAGATTAGCAATACC
TTGATGACAGACAACATGTCTCTGAAGGGAGACGACACAAAGGTCCCAGCATCCACTACAACTA
AGGTGAAGCCTGTGAGGCCTGACTCAACATTTCAAGAAGAGGGAGATGTGCTGGCTTCTGAAAG
TTGCCGAGACAGTGACGCACTTCTCAAGTCTAACTCTGAGGATTTGTCCCAACAAGGCACCCTC
AAGAAAGGTCCAGATACACTGCAACGATTTGAAAGATACAGAATCCCAAGTCACAAGAATGAAA
ACATGGGTGATAGCCAAGGTTCAGAGAGTACAGGAGAAGGAGTTGGGACCCTTCCTGCAGACAG
TGACTACCTGCTCAGACCTCTGAAAAGATCTGATTCAGAGGAAGCCCCATGGAACACTACGCAT
CCCAGCAGCTTAGGTAAAGGGAAAACCAAGTTCCATGTACCTCAAAAAAGTAAGAGGAACACAC
ATATAAATGCTGACTCTTCAGTAATTTTCCTAGATTCCATTTTGAAAGACGATGCAGAGAGGAA
AAGCAAAACCAGAAATATCTCCTTCCTAAAACCTTCTCTAGAGACAGAGAATAGTGGGTTGCCC
CCTGGGGCTACTGACAGTGGATCTTCTTGGAGGAAGCCTGAGGACCAAGAAGAAGTTGGTGAGG
AACCCAAGAACCAAGTGCTGAGAGAGAAATACAAACGGGTGAGCGACAGAATATCTTTTTGGGA
AGGAGGCAAAGCTGGTGCTAAGTTAAAGGCACCACAGCCCGCATCTTCTTGTAGCCAGGAGTCA
TCTTCAACTAAAGCATACCAGCCCGTGAAGTCACAAGTCATGTCCCTGGGCAGTTTATCTTTAG
GCCAGAGTGACTATAGTCAAGTCACAGCTAAACATGGGGTCTTTGATGGGGATGACCAAACACC
TCGTCTCGCTAGTTCTTCTTCCTCAAATAAACCTGAAACAACCGGGTCCCCAATATCAGGTCTA
TCCAAAAACCACCCTTCAGGTAACCAGTTCGGTAAAGTAACTCTACCTCAAACTATGGAGAATG
AAACACACCCTTCTTTGGAGAAAGACAGATTTCTGATTGATAAATCAAATGGCAACTTCAAAGT
TCTGTCTCTAAGAGAAAGGATGGATGAACGCAATACAGAACACGTCTATAGTCACTCTCAGTTT
GAGAATCTGAGGAAGTTTTGGGGCCTGGGAGCTGACGGAAACAGTAAACATAGCGATGGGAATA
ATACTGCTACAAACAAACAAACGTCTGTGCCGTCGAACAGACAGAAATCCAAGGAGTTTAACAC
CGTGAACTTATCAAGTGAAAAGACCCCTGAAGTAGAAGAAGGAAGACATTTAAGGCAGGGAAAT
GTTGGAGCTGCAGAAGAGATGGAGAAATTAAACTTAAAGTGCAGGCTTCCAGCACCACCAGACG
AAACCAAATTTCCACAGAAAACACCCCAAAAGTTCACTTATCCGTTGGTAGGAAATGAGCCTTC
GAAGGAAGATGTAGGAAAAAATACAGAATGCTTGGTTACCCCAGTGACTGAAAAGGCTTGCTCG
GATCAAGAGATTCAAGAATCCATAGTGAAAACAAGTGTTTTGCCTAAAGTCTCTACAGACACGT
TCAAGGACAGGGTACAGAAGTTAGTGGCAGAAGCCACATCACCAGCAGGCCAGACTTCTGGCAA
GGAAGTTCATGAGCAGCAAGCGCTCAAAGTCGGTGCTTCTGAAAATGGGGCATGGCCTCAAAAC
AAAAGTTTTGTCAAGGATGAGGAGGAACTCACAGGGGTCAAGAAGAGCACCAAAGAGCTCCAAA
GAAGGATTCCACAGGACTGTAGTGTGGACAAACTCCTGAAGGAAGCAACTGGAACTCCGTCGAG
TCCCTTGCAATCTCTGCAGGAACCGGTTATGACTAGACCCTCCTCCCCACCTAAAGAGGACCTA
TTGTTTAAAAAGTGGATAAGAGAGAATCACAGTCCTTCAGCAGATCAGAGAGAGAGAACAGCTC
CTTCCCCACAGGGTGTTGAAACTTTGGCAGGTACAGATTTCACCTCGAAGGCCAAACATTGTAA
CACAGAAGGGATGCTTCAGTTGACTGCAGAAGGGTCTCCTCCATTGGCTCAGCCTTCCCAGTCT
TTTGAGGGAGTTTCCAGTCCTCCAGCAGATGTGTCTTTATCTTGGAATGCTCCTCTTCTGTCCC
AGGATAGCACCTTGTCTTCTCAGAGGGAAATTTCTGAGGCTATAGAGAAAGTTGTTCTTCCCTC
CAAACCAGCAATGACCGATATAAATGCTGTATTGCAGAAGCTACTTAGAGAAGCTGGAGAAGTA
GACACCAAGCTCCCTGAAAGACCCTTAAGCCCTCAGAGAGTGAGTTCTGTGTGGGCTGCTCCAG
ACCCTGTTGGTCCAAATGAGGACTCCCATTCTTCTTACCCGGTTCCTGATACAACTCATGAAGG
CAGATCTGCTAGAATGGCACCATCAGCACATGCCACTACGTCACCTACTTATACTGTGACTCGG
TATGGTCAGGAGCTACTTCAGGAAGTGGCAGAGACAGTGAGGGAGACGATCATTCAGCCTAAGC
CAGAGTGCCCTGAATTCAGGGCTGCCTTGGAAAAACTACGAAAGGAAACACTGCAAACTTCCCT
GTCAAAAGACGACAAGAATACAGTGACTATTTCCCCATCAGCCTTAACAGGTAGTTGTGAGACG
TCCCATCAGCTTGCTTTTGAATTCCATCCTACAGAAATACAAGAAACTGTAGAGAAGGCTGAGG
CTCCATCAGTTACTGAGAGCATTTTTGATGTTGGTCTTGAGAAACTTCTTAAAGAGATGTCCGA
AGGGCCTCGTCAGCTCCAGCTGACAAGAGACATTTTGGAGAAGCAGACTTCACAGGCAGAGCAA
GCAGGGCTCATGGGAGAAACACCCCATCCTTTTTTGGATGACTCAGGAGCCTCTAAAATGAACT
TTGCAAGTAGTGGTTTGGAATCTCAAGTCAGCCCGTGTGATAAACAATTAGGAGGAGATGAAGC
TGTCACTGGTCAATTGATAGATGTCCAGGGTTACGCAGGTGGGTTTGGGGTCTCTGAATGCCCC
CAACCTTATGAAGACCATAAAAGAGAGGACGTTGAAACTGTGCTATTTGTAGAGGACAAAGGCA
GAGAAAAGGTTATTGCAGAAGCAACACGGGCTCCCCAGAAACCAGGCTTTGAAGAAGCTCCTAA
AGAAATGAGGGTGTCCAGAAATAAGCGCTCCATTGTTCTCCTGGAAACAAAAGGAAAGGCTACA
GAAACAAGCACAGTTAAATCCGAACTAGCAACAGCATATAAGAGACAAGAGAAAGAACAAGGAC
CAGAGGCATGCTCTGAATCTGAGTTTTCAGATGGGAACACCAGCTCTAACAGGGAGAGCTGGAG
AAATACCTCCAGTTCAGAAGAAGAACACAGCCCTGTTTTGAAAACTTTGGAAAGGAGAGCTGCT
AGGAAAATACCTTCCAAAAGTCTGGAAGACATTCCATCAGATTCATCAAATCAAGCAAAAGTAG
ATAATCTGCCTGAAGAATTAGTCCGTAGTGCTGAAGATGATCAAAAAGCAGACCAGGACCCAGA
TACAAATGAATGTATACCAGGAATTTCCACAGTGCCTTCACTGCCTGATAATCCGTTTTCCCAC
CCTGACAAACTCAAAAGGATGAGCAAGTCCGTGCCAGCATTTCTTCAAGATGAGAGCGATGACA
GAGAAACAGACACAGCATCAGAGAGCAGCTACCAGCTCAGGAGATACAAGAAGAGCCCCAGCTC
ATTAACCAATCTTAGCAGCTCCTCTGGCATGACGTCCTTGTCCTCTGCGAGTGGCAGTGTGATG
AGCGTTTACAGCGGAGACTTTGGCAACCTGGAAGTGAAAGGAAGTGTGCAGTTTGCAATCGACT
ACGTGGAGTCCCTGAAAGAGCTACATGTGTTTGTGGCCCAGTGTAAGGACTTAGCAGCAGCAGA
TGCTAAGAAACAGCGCTCAGACCCATATGTAAAGACCTATCTTCTACCAGACAAAGGCAAAATG
GGCAAGAAGAAGACCCTTGTAGTGAAGAAGACCTTGAATCCTGTATACAACGAGATATTGCGGT
ATAAAATTGAAAGGCAAGTCTTAAAGACACAGAAGTTGAACCTGTCTGTTTGGCATCGGGATAC
GTTTAAGCGCAACAGCTTTCTGGGGGAGGTAGAACTTGACCTCGAAACATGGGACTGGGACAGC
AAACAGAACAAACAACTGAAGTGGTACCCGCTGAAGAGGAAGACAGCACCAGTTGCCCTTGAGA
CAGAAAACAGAGGTGAAATGAAGCTAGCTCTCCAATATGTTCCGGAGCCAAGCCCTGGCAAAAA
GCTTCCTACTACTGGAGAAGTGCACATCTGGGTGAAGGAATGCCTTGACCTCCCACTGCTGAGG
GGGAGCCACCTAAATTCTTTTGTTAAGTGTACCATCCTTCCAGATACCAGTAGAAAAAGTCGCC
AGAAGACAAGAGCTGTAGGAAAAACCAGCAACCCCGTCTTCAACCATACCATGGTGTATGATGG
GTTCAGGCCTGAAGATCTGATGGAAGCCTGTGTAGAACTCACAGTCTGGGACCATTATAAACTA
ACCAACCAGTTTCTGGGAGGTCTCCGGATCGGCTTTGGAACAGGGAAAAGCTACGGGACTGAAG
TGGATTGGATGGACTCTACCTCTGAGGAAGCTGCTCTCTGGGAGAAGATGGTAAACTCTCCCAA
CACTTGGGTTGAAGCAATGCTGCCCCTCAGGATGCTTCTCATCGCCAAGATTTCCAAGTGATCT
TAGTCAGCGGATTCCACCATCAAAAGCTACTCCCCGGGGGGAGCTACTCCCCGGGGGGATCTGA
ACTTGAGCTGACGTCGTGCACAGATATCCTCTCCCATCGTCACTAATGACAACTATGAAGCATG
CTCAACTTAATCTGCACGCATTCCTTTGCTTGCATGGCTCAAGGGAACTAAACCATGACAAGAT
GTACAGCCCAGAAGTGCGATGTGATGCCAACATTCACGGAGACAACTGAACGAGCTAGGAAAAC
TGAACTGTTGCTCCCACACCAAAGAAAAAGCTAGCTTTACATGTTTCGTACCACAATCTGTGTT
GCAGTTCAGGCCTGCCTTTTGGTTATTAAAATGCTTGCTGGGCATATAAATAGGAAGGTTACGA
GCAAAAGGACAAGGATACTCCTGGGCTGGGGCAGAGAGAGGAAGGACAGAGGTGATGACAACGA
CCTACATAATATGACAACTATTTACTTAGTAACCTCTAATGAAACATTGAATTCCATCTCAGGG
CAGTAAGACTGACTTCACTGCTCATAAATCTGCCTTGAGAAACCCCCACACACCCCGACTCCTA
TAACGTCACCTTTCTCAGTCTCAAACGGACTTTGGTGCCACCTACTGGCTGCATATGGAATTCA
GCTCTTGGCTTATTTTGGCTTCATTTTTGCTAAAACGGGTGGCAAGTGTGTATTTTATAAGACT
ATGCTAAAATATTGCATATAATGATGGTTTTTCTTATGATTTTACTATACGGAAACAGCATAAT
AGTCACAGATATGCTTTGCTACAAAGTTTTAATCGAAATATAAATTGCTCAACTGTATTGAACT
TCCTATGTATAATTTTCAGAAGGTATTTTGTAAAAACCCTTAGAATAAATTATCATGACTTAAA
TTGTATTGGTAGTTTATCCTACCTTCTTAGATTTAAAAACAATACGTTGTATTAGGAATCCTAA
AATATAAATTCTCTGGTA

hide sequence

RefSeq Acc Id:

XM_039082402 ⟹ XP_038938330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,685,405 - 153,791,758 (+)	NCBI
mRatBN7.2	1	144,272,872 - 144,379,310 (+)	NCBI

RefSeq Acc Id:

XM_039082407 ⟹ XP_038938335

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,685,404 - 153,791,758 (+)	NCBI
mRatBN7.2	1	144,272,870 - 144,379,310 (+)	NCBI

RefSeq Acc Id:

XM_039082411 ⟹ XP_038938339

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,685,403 - 153,791,758 (+)	NCBI
mRatBN7.2	1	144,272,870 - 144,379,310 (+)	NCBI

RefSeq Acc Id:

XM_039082420 ⟹ XP_038938348

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,685,409 - 153,791,758 (+)	NCBI
mRatBN7.2	1	144,272,873 - 144,379,310 (+)	NCBI

RefSeq Acc Id:

XM_039082423 ⟹ XP_038938351

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,685,865 - 153,791,758 (+)	NCBI
mRatBN7.2	1	144,273,342 - 144,379,310 (+)	NCBI

RefSeq Acc Id:

XM_039082427 ⟹ XP_038938355

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,685,865 - 153,791,758 (+)	NCBI
mRatBN7.2	1	144,273,342 - 144,379,310 (+)	NCBI

RefSeq Acc Id:

XM_039082431 ⟹ XP_038938359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,685,865 - 153,791,758 (+)	NCBI
mRatBN7.2	1	144,273,337 - 144,379,310 (+)	NCBI

RefSeq Acc Id:

XM_063266999 ⟹ XP_063123069

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,686,027 - 153,791,758 (+)	NCBI

RefSeq Acc Id:

XM_063267013 ⟹ XP_063123083

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,686,027 - 153,791,758 (+)	NCBI

RefSeq Acc Id:

XM_063267027 ⟹ XP_063123097

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,686,004 - 153,791,758 (+)	NCBI

RefSeq Acc Id:

XM_063267036 ⟹ XP_063123106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,685,999 - 153,791,758 (+)	NCBI

RefSeq Acc Id:

XM_063267042 ⟹ XP_063123112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	153,685,866 - 153,791,758 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101962	(Get FASTA)	NCBI Sequence Viewer
	XP_008757873	(Get FASTA)	NCBI Sequence Viewer
	XP_038938330	(Get FASTA)	NCBI Sequence Viewer
	XP_038938335	(Get FASTA)	NCBI Sequence Viewer
	XP_038938339	(Get FASTA)	NCBI Sequence Viewer
	XP_038938348	(Get FASTA)	NCBI Sequence Viewer
	XP_038938351	(Get FASTA)	NCBI Sequence Viewer
	XP_038938355	(Get FASTA)	NCBI Sequence Viewer
	XP_038938359	(Get FASTA)	NCBI Sequence Viewer
	XP_063123069	(Get FASTA)	NCBI Sequence Viewer
	XP_063123083	(Get FASTA)	NCBI Sequence Viewer
	XP_063123097	(Get FASTA)	NCBI Sequence Viewer
	XP_063123106	(Get FASTA)	NCBI Sequence Viewer
	XP_063123112	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68993	(Get FASTA)	NCBI Sequence Viewer
	EDM18546	(Get FASTA)	NCBI Sequence Viewer
	EDM18547	(Get FASTA)	NCBI Sequence Viewer
	EDM18548	(Get FASTA)	NCBI Sequence Viewer
	EDM18549	(Get FASTA)	NCBI Sequence Viewer
	EDM18550	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000048585.4
	ENSRNOP00000077270
	ENSRNOP00000077270.1
	ENSRNOP00000096638
	ENSRNOP00000096638.1
	ENSRNOP00000103847
	ENSRNOP00000103847.1
	ENSRNOP00000108929
	ENSRNOP00000108929.1
	ENSRNOP00000110457
	ENSRNOP00000110457.1

RefSeq Acc Id:	XP_008757873 ⟸ XM_008759651
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AM63 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIDLSFLTEEEQDAILKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSGQWFYEAKAKRHKD KIHGADIIRASMRRKRLPAAAEQKKDTAMRTKESWVNNVNKDASLPPELAVVEEPADDTGPAGP SSSVVDPASSAIERSQENTRTPAVSLPKQRKNPFDSLETPEDLSSQQTKTKQSKTGKAGLFQIS KEGGLSESKEKPSIPDMSCQKSEKPKQPVSMETENASLIKAPIPKARKLIYKSNDLKNDDYLSF AGQRRDSLNARGTPRGILKRNSSSSSTDSETLRLNYNLDPKSKILSPGLTIHERISEKEHSLDD DSCTNSLEPLKHVRFSAVKNDLPQSPRPVLGQEVGEFTVLESDRLQNGTEDTGDIDEFQDHPEF SHRKPLSLYQSVTNPRISERETEQPMSSGSIPSEEISCHSDILPTRPQCVESSSIISEQDKSSH FTKLQSEMSKSPEDELTQCVEPEPSQTSDHSFRDHRQGKPLLTALTDQTASPVGPCATEIRKTT DDSISKVLDWFNRSSHTEDSTSTLQHLQGLDLREQTDSRAQISNTLMTDNMSLKGDDTKVPAST TTKVKPVRPDSTFQEEGDVLASESCRDSDALLKSNSEDLSQQGTLKKGPDTLQRFERYRIPSHK NENMGDSQGSESTGEGVGTLPADSDYLLRPLKRSDSEEAPWNTTHPSSLGKGKTKFHVPQKSKR NTHINADSSVIFLDSILKDDAERKSKTRNISFLKPSLETENSGLPPGATDSGSSWRKPEDQEEV GEEPKNQVLREKYKRVSDRISFWEGGKAGAKLKAPQPASSCSQESSSTKAYQPVKSQVMSLGSL SLGQSDYSQVTAKHGVFDGDDQTPRLASSSSSNKPETTGSPISGLSKNHPSGNQFGKVTLPQTM ENETHPSLEKDRFLIDKSNGNFKVLSLRERMDERNTEHVYSHSQFENLRKFWGLGADGNSKHSD GNNTATNKQTSVPSNRQKSKEFNTVNLSSEKTPEVEEGRHLRQGNVGAAEEMEKLNLKCRLPAP PDETKFPQKTPQKFTYPLVGNEPSKEDVGKNTECLVTPVTEKACSDQEIQESIVKTSVLPKVST DTFKDRVQKLVAEATSPAGQTSGKEVHEQQALKVGASENGAWPQNKSFVKDEEELTGVKKSTKE LQRRIPQDCSVDKLLKEATGTPSSPLQSLQEPVMTRPSSPPKEDLLFKKWIRENHSPSADQRER TAPSPQGVETLAGTDFTSKAKHCNTEGMLQLTAEGSPPLAQPSQSFEGVSSPPADVSLSWNAPL LSQDSTLSSQREISEAIEKVVLPSKPAMTDINAVLQKLLREAGEVDTKLPERPLSPQRVSSVWA APDPVGPNEDSHSSYPVPDTTHEGRSARMAPSAHATTSPTYTVTRYGQELLQEVAETVRETIIQ PKPECPEFRAALEKLRKETLQTSLSKDDKNTVTISPSALTGSCETSHQLAFEFHPTEIQETVEK AEAPSVTESIFDVGLEKLLKEMSEGPRQLQLTRDILEKQTSQAEQAGLMGETPHPFLDDSGASK MNFASSGLESQVSPCDKQLGGDEAVTGQLIDVQGYAGGFGVSECPQPYEDHKREDVETVLFVED KGREKVIAEATRAPQKPGFEEAPKEMRVSRNKRSIVLLETKGKATETSTVKSELATAYKRQEKE QGPEACSESEFSDGNTSSNRESWRNTSSSEEEHSPVLKTLERRAARKIPSKSLEDIPSDSSNQA KVDNLPEELVRSAEDDQKADQDPDTNECIPGISTVPSLPDNPFSHPDKLKRMSKSVPAFLQDES DDRETDTASESSYQLRRYKKSPSSLTNLSSSSGMTSLSSASGSVMSVYSGDFGNLEVKGSVQFA IDYVESLKELHVFVAQCKDLAAADAKKQRSDPYVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEI LRYKIERQVLKTQKLNLSVWHRDTFKRNSFLGEVELDLETWDWDSKQNKQLKWYPLKRKTAPVA LETENRGEMKLALQYVPEPSPGKKLPTTGEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRK SRQKTRAVGKTSNPVFNHTMVYDGFRPEDLMEACVELTVWDHYKLTNQFLGGLRIGFGTGKSYG TEVDWMDSTSEEAALWEKMVNSPNTWVEAMLPLRMLLIAKISK hide sequence

Ensembl Acc Id:

ENSRNOP00000048585 ⟸ ENSRNOT00000045048

Ensembl Acc Id:

ENSRNOP00000039142 ⟸ ENSRNOT00000042163

RefSeq Acc Id:	XP_038938335 ⟸ XM_039082407
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038938339 ⟸ XM_039082411
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038938330 ⟸ XM_039082402
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5Y7C8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938348 ⟸ XM_039082420
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038938359 ⟸ XM_039082431
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038938351 ⟸ XM_039082423
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038938355 ⟸ XM_039082427
- Peptide Label:	isoform X7

RefSeq Acc Id:	NP_001101962 ⟸ NM_001108492
- UniProtKB:	A0A8I6AM63 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000096638 ⟸ ENSRNOT00000114461

Ensembl Acc Id:

ENSRNOP00000077270 ⟸ ENSRNOT00000103814

RefSeq Acc Id:	XP_063123112 ⟸ XM_063267042
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063123106 ⟸ XM_063267036
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063123097 ⟸ XM_063267027
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063123083 ⟸ XM_063267013
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063123069 ⟸ XM_063266999
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5Y7C8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000108929 ⟸ ENSRNOT00000163984

Ensembl Acc Id:

ENSRNOP00000103847 ⟸ ENSRNOT00000153378

Ensembl Acc Id:

ENSRNOP00000110457 ⟸ ENSRNOT00000137733

Protein Domains

C2 RabBD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DFB1-F1-model_v2	AlphaFold	B5DFB1	1-376	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307647	AgrOrtholog
BioCyc Gene	G2FUF-58530	BioCyc
Ensembl Genes	ENSRNOG00000030776	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000049878	Ensembl
Ensembl Transcript	ENSRNOT00000045048.5	UniProtKB/TrEMBL
	ENSRNOT00000103814	ENTREZGENE
	ENSRNOT00000103814.2	UniProtKB/TrEMBL
	ENSRNOT00000114461	ENTREZGENE
	ENSRNOT00000114461.2	UniProtKB/TrEMBL
	ENSRNOT00000137733	ENTREZGENE
	ENSRNOT00000137733.1	UniProtKB/TrEMBL
	ENSRNOT00000153378	ENTREZGENE
	ENSRNOT00000153378.1	UniProtKB/TrEMBL
	ENSRNOT00000163984	ENTREZGENE
	ENSRNOT00000163984.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.150	UniProtKB/TrEMBL
	6.10.250.3000	UniProtKB/TrEMBL
InterPro	C2_Ca-dep	UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/TrEMBL
	Rab_BD	UniProtKB/TrEMBL
	SYTL1-5_C2B	UniProtKB/TrEMBL
NCBI Gene	361604	ENTREZGENE
PANTHER	BITESIZE, ISOFORM I	UniProtKB/TrEMBL
	PTHR45716:SF5	UniProtKB/TrEMBL
Pfam	PF00168	UniProtKB/TrEMBL
PhenoGen	Sytl2	PhenoGen
PRINTS	C2DOMAIN	UniProtKB/TrEMBL
PROSITE	PS50004	UniProtKB/TrEMBL
	RABBD	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000030776	RatGTEx
	ENSRNOG00000049878	RatGTEx
SMART	SM00239	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49562	UniProtKB/TrEMBL
UniProt	A0A8I5Y7C8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AM63	ENTREZGENE, UniProtKB/TrEMBL
	A0A8J8YSR3_RAT	UniProtKB/TrEMBL
	A0ABK0LHV2_RAT	UniProtKB/TrEMBL
	A0ABK0LQI3_RAT	UniProtKB/TrEMBL
	A0ABK0LWV8_RAT	UniProtKB/TrEMBL
	B5DFB1_RAT	UniProtKB/TrEMBL
UniProt Secondary	F1LN23	UniProtKB/TrEMBL
	F1LNJ5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Sytl2	synaptotagmin-like 2	Sytl2_predicted	synaptotagmin-like 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Sytl2_predicted	synaptotagmin-like 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar