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Gene: Tmem50b (transmembrane protein 50B) Rattus norvegicus

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Symbol:

Tmem50b

Name:

transmembrane protein 50B

RGD ID:

1307561

Description:

Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Predicted to be located in endoplasmic reticulum and membrane. Orthologous to human TMEM50B (transmembrane protein 50B); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC360698; MGC109374; RGD1307561; similar to RIKEN cDNA B230114J08

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM50B (transmembrane protein 50B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tmem50b (transmembrane protein 50B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem50b (transmembrane protein 50B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM50B (transmembrane protein 50B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM50B (transmembrane protein 50B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem50b (transmembrane protein 50B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM50B (transmembrane protein 50B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM50B (transmembrane protein 50B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem50b (transmembrane protein 50B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tmem50b (transmembrane protein 50B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TMEM50A (transmembrane protein 50A)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	TMEM50B (transmembrane protein 50B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Tmem50b (transmembrane protein 50B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem50a (transmembrane protein 50A)	Alliance	DIOPT (OrthoFinder\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG15012	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	VPS68	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	VPS68	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	Y74C10AL.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmem50b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	44,290,805 - 44,323,650 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	44,290,807 - 44,323,607 (-)	Ensembl				GRCr8
mRatBN7.2	11	30,804,835 - 30,837,675 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,804,837 - 30,837,661 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	39,498,895 - 39,531,707 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	32,170,331 - 32,203,144 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	31,335,533 - 31,368,207 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	31,719,441 - 31,752,276 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,719,443 - 31,752,243 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	35,327,975 - 35,361,018 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	31,533,823 - 31,566,625 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	30,472,297 - 30,505,079 (-)	NCBI		Celera
RGSC_v3.1	11	31,572,882 - 31,605,683 (-)	NCBI
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP)

acrolein (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

butan-1-ol (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

clobetasol (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

diethyl phthalate (EXP,ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

dimethylarsinous acid (ISO)

dioxygen (ISO)

doxorubicin (ISO)

flutamide (EXP)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

isobutanol (ISO)

leflunomide (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methyl methanesulfonate (ISO)

niclosamide (ISO)

nitrates (ISO)

ochratoxin A (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

quercetin (ISO)

resveratrol (ISO)

rotenone (EXP,ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

T-2 toxin (ISO)

thioacetamide (EXP)

thiram (ISO)

trichloroethene (EXP)

triphenyl phosphate (EXP)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

endoplasmic reticulum (IEA,ISO)

membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16780588	PMID:18541381

Genomics

Comparative Map Data

Tmem50b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	44,290,805 - 44,323,650 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	44,290,807 - 44,323,607 (-)	Ensembl				GRCr8
mRatBN7.2	11	30,804,835 - 30,837,675 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,804,837 - 30,837,661 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	39,498,895 - 39,531,707 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	32,170,331 - 32,203,144 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	31,335,533 - 31,368,207 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	31,719,441 - 31,752,276 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,719,443 - 31,752,243 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	35,327,975 - 35,361,018 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	31,533,823 - 31,566,625 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	30,472,297 - 30,505,079 (-)	NCBI		Celera
RGSC_v3.1	11	31,572,882 - 31,605,683 (-)	NCBI
Cytogenetic Map	11	q11	NCBI

TMEM50B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	33,432,486 - 33,479,974 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	33,432,485 - 33,479,974 (-)	Ensembl			hg38	GRCh38
GRCh37	21	34,804,793 - 34,852,281 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	33,743,318 - 33,774,151 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	21	33,726,662 - 33,774,120	NCBI
Celera	21	20,011,535 - 20,051,915 (-)	NCBI		Celera
Cytogenetic Map	21	q22.11	NCBI
HuRef	21	20,273,351 - 20,330,637 (-)	NCBI		HuRef
CHM1_1	21	34,367,161 - 34,415,001 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	31,804,757 - 31,861,806 (-)	NCBI		T2T-CHM13v2.0

Tmem50b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	91,371,390 - 91,394,573 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	91,371,391 - 91,394,688 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	91,574,508 - 91,597,680 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	91,574,503 - 91,597,800 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	91,574,753 - 91,597,925 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	91,463,367 - 91,486,539 (-)	NCBI		MGSCv36	mm8
Celera	16	92,651,244 - 92,674,477 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	53.11	NCBI

Tmem50b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	32,874,905 - 32,916,036 (-)	Ensembl
ChiLan1.0	NW_004955407	32,876,380 - 32,916,036 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM50B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	29,540,278 - 29,597,904 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	24,416,790 - 24,457,312 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	19,789,799 - 19,847,335 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	33,163,876 - 33,219,556 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	33,163,876 - 33,219,556 (-)	Ensembl			panPan2	panpan1.1

TMEM50B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	28,061,730 - 28,117,485 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	28,059,668 - 28,115,211 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	28,266,679 - 28,322,494 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	28,248,956 - 28,303,358 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	28,133,780 - 28,189,375 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	28,146,996 - 28,203,005 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	28,647,598 - 28,703,167 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tmem50b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	28,594,313 - 28,641,933 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	8,825,846 - 8,873,510 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	8,825,956 - 8,873,510 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM50B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	197,046,682 - 197,093,241 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	197,048,285 - 197,093,308 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TMEM50B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	58,701,542 - 58,730,311 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	58,701,557 - 58,733,139 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	1,203,235 - 1,231,970 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem50b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	21,663,673 - 21,704,836 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	21,649,759 - 21,704,734 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tmem50b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	53,004,346 - 53,035,496 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tmem50b
178 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	716
Count of miRNA genes:	289
Interacting mature miRNAs:	363
Transcripts:	ENSRNOT00000002775
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	33306008	78306008	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	3818154	48818154	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	33306008	78306008	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	10806125	55806125	Rat
634341	Bw121	Body weight QTL 121	3.56		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	11	35323199	55805892	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	29958996	57754989	Rat
2290451	Scl58	Serum cholesterol level QTL 58	3.48		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	11	26318031	55806125	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	31915469	76915469	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	36428416	81428416	Rat
1600394	Edcs1	Endometrial carcinoma susceptibility QTL1	2.9	0.04	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	11	12823152	57823152	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	34618760	79618760	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	36749459	81749459	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	36749459	81749459	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
631510	Spl2	Serum phospholipid level QTL 2	4.1		blood phospholipid amount (VT:0006084)	serum phospholipid level (CMO:0001171)	11	27556685	72556685	Rat

Markers in Region

D11Mco5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	30,824,466 - 30,824,687 (+)	MAPPER	mRatBN7.2
mRatBN7.2	11	30,824,466 - 30,824,850 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	31,739,067 - 31,739,450	NCBI	Rnor6.0
Rnor_6.0	11	31,739,067 - 31,739,287	NCBI	Rnor6.0
Rnor_5.0	11	35,347,601 - 35,347,821	UniSTS	Rnor5.0
Rnor_5.0	11	35,347,601 - 35,347,984	UniSTS	Rnor5.0
RGSC_v3.4	11	31,553,449 - 31,553,832	UniSTS	RGSC3.4
RGSC_v3.4	11	31,553,448 - 31,553,669	RGD	RGSC3.4
RGSC_v3.4	11	31,553,449 - 31,553,669	UniSTS	RGSC3.4
Celera	11	30,491,905 - 30,492,285	UniSTS
Celera	11	30,491,905 - 30,492,122	UniSTS
RGSC_v3.1	11	31,592,506 - 31,592,727	RGD
Cytogenetic Map	11	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002775 ⟹ ENSRNOP00000002775

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	44,290,807 - 44,323,607 (-)	Ensembl
mRatBN7.2 Ensembl	11	30,804,837 - 30,837,661 (-)	Ensembl
Rnor_6.0 Ensembl	11	31,719,443 - 31,752,243 (-)	Ensembl

RefSeq Acc Id:

NM_001025014 ⟹ NP_001020185

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,290,805 - 44,323,607 (-)	NCBI
mRatBN7.2	11	30,804,837 - 30,837,644 (-)	NCBI
Rnor_6.0	11	31,719,441 - 31,752,243 (-)	NCBI
Rnor_5.0	11	35,327,975 - 35,361,018 (-)	NCBI
RGSC_v3.4	11	31,533,823 - 31,566,625 (-)	RGD
Celera	11	30,472,297 - 30,505,079 (-)	RGD

Sequence:

show sequence

GCCACGGGCCTCGGGCTCCACCGCTGAGGTTGAGCCGGCTGCTGCTGCCCGGGCCGACGCGCGC
CCTGGACGTCCCTGCTCCAGCTTGGGCTCGGCGAGGACGTTGCAGGTAGCCGGGAAGCGCTGTT
GAATGAGAAACCCACGCGTACGGAGTTCATATGGCAGGCTTCCTGGATAACTTCCGATGGCCGG
AGTGCGAGTGTATTGACTGGAGTGAGCGCAGGAACACGGTAGCCTCCGTGGTTGCAGGAATCTT
GTTCTTTACAGGCTGGTGGATAATGATCGATGCGGCCGTGGTGTATCCTAAGCCTGAGCAACTA
AACCACGCCTTCCACACGTGTGGTGTCTTCTCCACGCTGGCCTTCTTCATGATAAATGCTGTAT
CCAATGCCCAGGTGCGAGGTGACAGCTATGAGAGCGGCTGCTTAGGAAGAACTGGAGCTCGGGT
CTGGCTCTTCATTGGTTTCATGCTGATGTTCGGATCGCTTATCGCCTCCATGTGGATCCTTTTT
GGTGCATATGTTACTCAAAATATTGATGTTTACCCTGGACTAGCTGTGTTCTTTCAAAATGCAC
TTATATTTTTTAGCACTCTGATCTACAAATTCGGAAGAACTGAAGAGCTCTGGGCCTGAGATCA
CCTCACACACACCTCACCTTCCTCTTGTTCCACGCCTAGCTTCCTTTTTCTCTGGTATAGTCTA
CATATTGCCAAATGAAGCACATCATGTGCTCAGAGGTTTCTGTCTTCATAGTTTTGTGCCCTGA
GTTTTGAATTGCTTTTGAAAATGTCTATCTTGGTTTTTCATCAACTAGACAAGTTAATATGATA
GAATATATCATCACTACATGTACATGATACTGAATGTCAGGTTTTTATTCCCAAGACTAAGATT
GGTGAGTCCTGAGCCAGGGTTATATTGTCTTGGTGTTAGAGGTAAATACTCTGACTTGGTGTCT
CTGAGGTTTGAAAACGTGCAAAATACACAGCTCTGTGTCTCTGGAGGCCCTGAGCTGTTAATGA
AGGCATTTCTGCCAGGTGTAACTTACTTTGGCTTAGAAATGAGTTGTTGTTTTTTTTTAAAGGA
AAAATGTTTGTGCATATGTTTTAAAGAGCTGGACTTTTTATATGAAGATTTTTTAAATGCCCAA
AGGACTAGTTTGAAAGCCCCCTTTACAAAGAATTCCTCTAACTTGACTTTTGCTTGAGAAGGGA
TAACACAGAGATAAACTCCATTTTGTGGAAAGATGGTAGGCAGCTGAGCCATGTGTCCCCATCT
TACCAAGCTACTTCGATGCCCGGGTGTCAAGGACGGCTTGCCACAATCTGGCATTACACACGGC
AAGGGACCCTGCTGCAGGTGCTGTGTAGACATGGCCAAGTGGAATAACTAGCTAAGACCATCCC
GAAGGGCGCTGTGACCTACAGAAGGTCAGACGCTCGACTCACTTCATTCTGGACTCCCTCTGCT
GTCTCAGGCTCTCAGGCTCTCAGGCTCTGGGTGACACTCCACACCAGACGCTCCTTCCCTGTGT
TTGACGCTGCGCTCGCACCGTGTATATTTCTGTGGGCCTTTCCCTGGGGTCAGGATTTTGTGTT
GCACTTTTAACCCCAGAGGACCTTTCTAAGACCTTGTGCTGTAAACAGTAGTGAGGATGGCAGT
GGTGCACCTTCTGACTCTGGCCTCACCTTACTTAGCAGTTCTCAGAGAGGCCCCTCCAAGCACA
GCGTGTGAAGCAGCTGCTGATCGCTGTGCCCATTCTGATGCATCTTGCTTCACTGTTTTCCCGT
CAGTCCCTCAAAAGGCCAGCTTTGTCTTGCTTCCAGCAAACTACAGAGCTAACGACACGTTTCC
ATTCATAGAACATGCAGTGAGTGTCCCTCTCACACTGCTGAAGTTAGGTGTGTGGGGGACGTGG
ACCTCTCACACACGCTGCAGTTAGGTGTGGGGGACGCAAAACACAGCCTGGCTCTGTCCATTCT
CACTGTCCAAGATGCGCTCATAAACAAGGAGAGGACGCACTGGACCACAGCATGCGCATGCAGA
GGTTTATGACGGGTAGCCCTGAGGACCGACTGGAAATGCTGGTGGCTTCCTCTCTATTCATGAA
TTTTGTTTTAATTGTGAGCAAATCTGTTGATTTCCTGTTTGTTGTTTCATTAAACAAGAGAGAT
GACATTAGTATCCTCATAGATATTATGAGTCAGAATTCTTGGTAATCATCTAAATTCACACAGT
TCTCTTAATAAAGCTCTCAAGCTCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006248066 ⟹ XP_006248128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,290,805 - 44,323,637 (-)	NCBI
mRatBN7.2	11	30,804,835 - 30,837,674 (-)	NCBI
Rnor_6.0	11	31,719,441 - 31,752,276 (-)	NCBI
Rnor_5.0	11	35,327,975 - 35,361,018 (-)	NCBI

Sequence:

show sequence

ACCCCGCCTCACCGGCGCCCTGGCATCGCGCCTGCCACGGGCCTCGGGCTCCACCGCTGAGGTT
GAGCCGGCTGCTGCTGCCCGGGCCGACGCGCGCCCTGGACGTCCCTGCTCCAGCTTGGGCTCGG
CGAGGACGTTGCAGGTAGCCGGGTTCCCCAGGGAAGAGGTGTCTCATTTGGAAGCACGCCTGAC
GGCCAGTGTCCGAGCCACACAGAGGCCGAGATTTTCCTTCCTCATACAGTTAACTACGTTGTTT
TCCTTGGGACGCCTACACCATCTATTCTGAAGCGCTGTTGAATGAGAAACCCACGCGTACGGAG
TTCAGATGGCAGGCTTCCTGGATAACTTCCGATGGCCGGAGTGCGAGTGTATTGACTGGAGTGA
GCGCAGGAACACGGTAGCCTCCGTGGTTGCAGGAATCTTGTTCTTTACAGGCTGGTGGATAATG
ATCGATGCGGCCGTGGTGTATCCTAAGCCTGAGCAACTAAACCACGCCTTCCACACGTGTGGTG
TCTTCTCCACGCTGGCCTTCTTCATGATAAATGCTGTATCCAATGCCCAGGTGCGAGGTGACAG
CTATGAGAGCGGCTGCTTAGGAAGAACTGGAGCTCGGGTCTGGCTCTTCATTGGTTTCATGCTG
ATGTTCGGATCGCTTATCGCCTCCATGTGGATCCTTTTTGGTGCATATGTTACTCAAAATATTG
ATGTTTACCCTGGACTAGCTGTGTTCTTTCAAAATGCACTTATATTTTTTAGCACTCTGATCTA
CAAATTCGGAAGAACTGAAGAGCTCTGGGCCTGAGATCACCTCACACACACCTCACCTTCCTCT
TGTTCCACGCCTAGCTTCCTTTTTCTCTGGTATAGTCTACATATTGCCAAATGAAGCACATCAT
GTGCTCAGAGGTTTCTGTCTTCATAGTTTTGTGCCCTGAGTTTTGAATTGCTTTTGAAAATGTC
TATCTTGGTTTTTCATCAACTAGACAAGTTAATATGATAGAATATATCATCACTACATGTACAT
GATACTGAATGTCAGGTTTTTATTCCCAAGACTAAGATTGGTGAGTCCTGAGCCAGGGTTATAT
TGTCTTGGTGTTAGAGGTAAATACTCTGACTTGGTGTCTCTGAGGTTTGAAAACGTGCAAAATA
CACAGCTCTGTGTCTCTGGAGGCCCTGAGCTGTTAATGAAGGCATTTCTGCCAGGTGTAACTTA
CTTTGGCTTAGAAATGAGTTGTTGTTTTTTTTTAAAGGAAAAATGTTTGTGCATATGTTTTAAA
GAGCTGGACTTTTTATATGAAGATTTTTTAAATGCCCAAAGGACTAGTTTGAAAGCCCCCTTTA
CAAAGAATTCCTCTAACTTGACTTTTGCTTGAGAAGGGATAACACAGAGATAAACTCCATTTTG
TGGAAAGATGGTAGGCAGCTGAGCCATGTGTCCCCATCTTACCAAGCTACTTCGATGCCCGGGT
GTCAAGGACGGCTTGCCACAATCTGGCATTACACACGGCAAGGGACCCTGCTGCAGGTGCTGTG
TAGACATGGCCAAGTGGAATAACTAGCTAAGACCATCCCGAAGGGCGCTGTGACCTACAGAAGG
TCAGACGCTCGACTCACTTCATTCTGGACTCCCTCTGCTGTCTCAGGCTCTCAGGCTCTCAGGC
TCTGGGTGACACTCCACACCAGACGCTCCTTCCCTGTGTTTGACGCTGCGCTCGCACCGTGTAT
ATTTCTGTGGGCCTTTCCCTGGGGTCAGGATTTTGTGTTGCACTTTTAACCCCAGAGGACCTTT
CTAAGACCTTGTGCTGTAAACAGTAGTGAGGATGGCAGTGGTGCACCTTCTGACTCTGGCCTCA
CCTTACTTAGCAGTTCTCAGAGAGGCCCCTCCAAGCACAGCGTGTGAAGCAGCTGCTGATCGCT
GTGCCCATTCTGATGCATCTTGCTTCACTGTTTTCCCGTCAGTCCCTCAAAAGGCCAGCTTTGT
CTTGCTTCCAGCAAACTACAGAGCTAACGACACGTTTCCATTCATAGAACATGCAGTGAGTGTC
CCTCTCACACTGCTGAAGTTAGGTGTGTGGGGGACGTGGACCTCTCACACACGCTGCAGTTAGG
TGTGGGGGACGCAAAACACAGCCTGGCTCTGTCCATTCTCACTGTCCAAGATGCGCTCATAAAC
AAGGAGAGGACGCACTGGACCACAGCATGCGCATGCAGAGGTTTATGACGGGTAGCCCTGAGGA
CCGACTGGAAATGCTGGTGGCTTCCTCTCTATTCATGAATTTTGTTTTAATTGTGAGCAAATCT
GTTGATTTCCTGTTTGTTGTTTCATTAAACAAGAGAGATGACATTAGTATCCTCATAGATATTA
TGAGTCAGAATTCTTGGTAATCATCTAAATTCACACAGTTCTCTTAATAAAGCTCTCAAGCTCA
A

hide sequence

RefSeq Acc Id:

XM_006248067 ⟹ XP_006248129

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,290,805 - 44,323,633 (-)	NCBI
mRatBN7.2	11	30,804,835 - 30,837,521 (-)	NCBI
Rnor_6.0	11	31,719,441 - 31,752,098 (-)	NCBI
Rnor_5.0	11	35,327,975 - 35,361,018 (-)	NCBI

Sequence:

show sequence

CCGCGATCCGCCGATCGAGCGCCGGGCGCCGGCCCCGCGCGGCCCAAGGTGCTGTGGCGCCGCC
CGTGTCGGTGCCCGGGAGCGTGCGGGCGACCCGCAGGGCCCGGCCTGCGCCCGCGTCCTCTCGT
CGGTCCTTGGCCCTGACGTAGCCGTGACCCGCGCTCCGCCGGGGCAGGCCGCTCCGCCGCGCAT
CTCGTCTGGAGCCTGGGGAGGTCCCCAAAGCCACCGGTTCCCCAGGGAAGAGGTGTCTCATTTG
GAAGCACGCCTGACGGCCAGTGTCCGAGCCACACAGAGGCCGAGATTTTCCTTCCTCATACAGT
TAACTACGTTGTTTTCCTTGGGACGCCTACACCATCTATTCTGAAGCGCTGTTGAATGAGAAAC
CCACGCGTACGGAGTTCAGATGGCAGGCTTCCTGGATAACTTCCGATGGCCGGAGTGCGAGTGT
ATTGACTGGAGTGAGCGCAGGAACACGGTAGCCTCCGTGGTTGCAGGAATCTTGTTCTTTACAG
GCTGGTGGATAATGATCGATGCGGCCGTGGTGTATCCTAAGCCTGAGCAACTAAACCACGCCTT
CCACACGTGTGGTGTCTTCTCCACGCTGGCCTTCTTCATGATAAATGCTGTATCCAATGCCCAG
GTGCGAGGTGACAGCTATGAGAGCGGCTGCTTAGGAAGAACTGGAGCTCGGGTCTGGCTCTTCA
TTGGTTTCATGCTGATGTTCGGATCGCTTATCGCCTCCATGTGGATCCTTTTTGGTGCATATGT
TACTCAAAATATTGATGTTTACCCTGGACTAGCTGTGTTCTTTCAAAATGCACTTATATTTTTT
AGCACTCTGATCTACAAATTCGGAAGAACTGAAGAGCTCTGGGCCTGAGATCACCTCACACACA
CCTCACCTTCCTCTTGTTCCACGCCTAGCTTCCTTTTTCTCTGGTATAGTCTACATATTGCCAA
ATGAAGCACATCATGTGCTCAGAGGTTTCTGTCTTCATAGTTTTGTGCCCTGAGTTTTGAATTG
CTTTTGAAAATGTCTATCTTGGTTTTTCATCAACTAGACAAGTTAATATGATAGAATATATCAT
CACTACATGTACATGATACTGAATGTCAGGTTTTTATTCCCAAGACTAAGATTGGTGAGTCCTG
AGCCAGGGTTATATTGTCTTGGTGTTAGAGGTAAATACTCTGACTTGGTGTCTCTGAGGTTTGA
AAACGTGCAAAATACACAGCTCTGTGTCTCTGGAGGCCCTGAGCTGTTAATGAAGGCATTTCTG
CCAGGTGTAACTTACTTTGGCTTAGAAATGAGTTGTTGTTTTTTTTTAAAGGAAAAATGTTTGT
GCATATGTTTTAAAGAGCTGGACTTTTTATATGAAGATTTTTTAAATGCCCAAAGGACTAGTTT
GAAAGCCCCCTTTACAAAGAATTCCTCTAACTTGACTTTTGCTTGAGAAGGGATAACACAGAGA
TAAACTCCATTTTGTGGAAAGATGGTAGGCAGCTGAGCCATGTGTCCCCATCTTACCAAGCTAC
TTCGATGCCCGGGTGTCAAGGACGGCTTGCCACAATCTGGCATTACACACGGCAAGGGACCCTG
CTGCAGGTGCTGTGTAGACATGGCCAAGTGGAATAACTAGCTAAGACCATCCCGAAGGGCGCTG
TGACCTACAGAAGGTCAGACGCTCGACTCACTTCATTCTGGACTCCCTCTGCTGTCTCAGGCTC
TCAGGCTCTCAGGCTCTGGGTGACACTCCACACCAGACGCTCCTTCCCTGTGTTTGACGCTGCG
CTCGCACCGTGTATATTTCTGTGGGCCTTTCCCTGGGGTCAGGATTTTGTGTTGCACTTTTAAC
CCCAGAGGACCTTTCTAAGACCTTGTGCTGTAAACAGTAGTGAGGATGGCAGTGGTGCACCTTC
TGACTCTGGCCTCACCTTACTTAGCAGTTCTCAGAGAGGCCCCTCCAAGCACAGCGTGTGAAGC
AGCTGCTGATCGCTGTGCCCATTCTGATGCATCTTGCTTCACTGTTTTCCCGTCAGTCCCTCAA
AAGGCCAGCTTTGTCTTGCTTCCAGCAAACTACAGAGCTAACGACACGTTTCCATTCATAGAAC
ATGCAGTGAGTGTCCCTCTCACACTGCTGAAGTTAGGTGTGTGGGGGACGTGGACCTCTCACAC
ACGCTGCAGTTAGGTGTGGGGGACGCAAAACACAGCCTGGCTCTGTCCATTCTCACTGTCCAAG
ATGCGCTCATAAACAAGGAGAGGACGCACTGGACCACAGCATGCGCATGCAGAGGTTTATGACG
GGTAGCCCTGAGGACCGACTGGAAATGCTGGTGGCTTCCTCTCTATTCATGAATTTTGTTTTAA
TTGTGAGCAAATCTGTTGATTTCCTGTTTGTTGTTTCATTAAACAAGAGAGATGACATTAGTAT
CCTCATAGATATTATGAGTCAGAATTCTTGGTAATCATCTAAATTCACACAGTTCTCTTAATAA
AGCTCTCAAGCTCAA

hide sequence

RefSeq Acc Id:

XM_006248068 ⟹ XP_006248130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,290,805 - 44,323,622 (-)	NCBI
mRatBN7.2	11	30,804,835 - 30,837,521 (-)	NCBI
Rnor_6.0	11	31,719,441 - 31,752,098 (-)	NCBI
Rnor_5.0	11	35,327,975 - 35,361,018 (-)	NCBI

Sequence:

show sequence

CCGCGATCCGCCGATCGAGCGCCGGGCGCCGGCCCCGCGCGGCCCAAGGTGCTGTGGCGCCGCC
CGTGTCGGTGCCCGGGAGCGTGCGGGCGACCCGCAGGGCCCGGCCTGCGCCCGCGTCCTCTCGT
CGGTCCTTGGCCCTGACGTAGCCGTGACCCGCGCTCCGCCGGGGCAGGCCGCTCCGCCGCGCAT
CTCGTCTGGAGCCTGGGGAGGTCCCCAAAGCCACCGGAAGCGCTGTTGAATGAGAAACCCACGC
GTACGGAGTTCAGATGGCAGGCTTCCTGGATAACTTCCGATGGCCGGAGTGCGAGTGTATTGAC
TGGAGTGAGCGCAGGAACACGGTAGCCTCCGTGGTTGCAGGAATCTTGTTCTTTACAGGCTGGT
GGATAATGATCGATGCGGCCGTGGTGTATCCTAAGCCTGAGCAACTAAACCACGCCTTCCACAC
GTGTGGTGTCTTCTCCACGCTGGCCTTCTTCATGATAAATGCTGTATCCAATGCCCAGGTGCGA
GGTGACAGCTATGAGAGCGGCTGCTTAGGAAGAACTGGAGCTCGGGTCTGGCTCTTCATTGGTT
TCATGCTGATGTTCGGATCGCTTATCGCCTCCATGTGGATCCTTTTTGGTGCATATGTTACTCA
AAATATTGATGTTTACCCTGGACTAGCTGTGTTCTTTCAAAATGCACTTATATTTTTTAGCACT
CTGATCTACAAATTCGGAAGAACTGAAGAGCTCTGGGCCTGAGATCACCTCACACACACCTCAC
CTTCCTCTTGTTCCACGCCTAGCTTCCTTTTTCTCTGGTATAGTCTACATATTGCCAAATGAAG
CACATCATGTGCTCAGAGGTTTCTGTCTTCATAGTTTTGTGCCCTGAGTTTTGAATTGCTTTTG
AAAATGTCTATCTTGGTTTTTCATCAACTAGACAAGTTAATATGATAGAATATATCATCACTAC
ATGTACATGATACTGAATGTCAGGTTTTTATTCCCAAGACTAAGATTGGTGAGTCCTGAGCCAG
GGTTATATTGTCTTGGTGTTAGAGGTAAATACTCTGACTTGGTGTCTCTGAGGTTTGAAAACGT
GCAAAATACACAGCTCTGTGTCTCTGGAGGCCCTGAGCTGTTAATGAAGGCATTTCTGCCAGGT
GTAACTTACTTTGGCTTAGAAATGAGTTGTTGTTTTTTTTTAAAGGAAAAATGTTTGTGCATAT
GTTTTAAAGAGCTGGACTTTTTATATGAAGATTTTTTAAATGCCCAAAGGACTAGTTTGAAAGC
CCCCTTTACAAAGAATTCCTCTAACTTGACTTTTGCTTGAGAAGGGATAACACAGAGATAAACT
CCATTTTGTGGAAAGATGGTAGGCAGCTGAGCCATGTGTCCCCATCTTACCAAGCTACTTCGAT
GCCCGGGTGTCAAGGACGGCTTGCCACAATCTGGCATTACACACGGCAAGGGACCCTGCTGCAG
GTGCTGTGTAGACATGGCCAAGTGGAATAACTAGCTAAGACCATCCCGAAGGGCGCTGTGACCT
ACAGAAGGTCAGACGCTCGACTCACTTCATTCTGGACTCCCTCTGCTGTCTCAGGCTCTCAGGC
TCTCAGGCTCTGGGTGACACTCCACACCAGACGCTCCTTCCCTGTGTTTGACGCTGCGCTCGCA
CCGTGTATATTTCTGTGGGCCTTTCCCTGGGGTCAGGATTTTGTGTTGCACTTTTAACCCCAGA
GGACCTTTCTAAGACCTTGTGCTGTAAACAGTAGTGAGGATGGCAGTGGTGCACCTTCTGACTC
TGGCCTCACCTTACTTAGCAGTTCTCAGAGAGGCCCCTCCAAGCACAGCGTGTGAAGCAGCTGC
TGATCGCTGTGCCCATTCTGATGCATCTTGCTTCACTGTTTTCCCGTCAGTCCCTCAAAAGGCC
AGCTTTGTCTTGCTTCCAGCAAACTACAGAGCTAACGACACGTTTCCATTCATAGAACATGCAG
TGAGTGTCCCTCTCACACTGCTGAAGTTAGGTGTGTGGGGGACGTGGACCTCTCACACACGCTG
CAGTTAGGTGTGGGGGACGCAAAACACAGCCTGGCTCTGTCCATTCTCACTGTCCAAGATGCGC
TCATAAACAAGGAGAGGACGCACTGGACCACAGCATGCGCATGCAGAGGTTTATGACGGGTAGC
CCTGAGGACCGACTGGAAATGCTGGTGGCTTCCTCTCTATTCATGAATTTTGTTTTAATTGTGA
GCAAATCTGTTGATTTCCTGTTTGTTGTTTCATTAAACAAGAGAGATGACATTAGTATCCTCAT
AGATATTATGAGTCAGAATTCTTGGTAATCATCTAAATTCACACAGTTCTCTTAATAAAGCTCT
CAAGCTCAA

hide sequence

RefSeq Acc Id:

XM_017598025 ⟹ XP_017453514

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,290,805 - 44,323,645 (-)	NCBI
mRatBN7.2	11	30,804,835 - 30,837,675 (-)	NCBI
Rnor_6.0	11	31,719,441 - 31,752,276 (-)	NCBI

Sequence:

show sequence

ACCCCGCCTCACCGGCGCCCTGGCATCGCGCCTGCCACGGGCCTCGGGCTCCACCGCTGAGGTT
GAGCCGGCTGCTGCTGCCCGGGCCGACGCGCGCCCTGGACGTCCCTGCTCCAGCTTGGGCTCGG
CGAGGACGTTGCAGGAAGCGCTGTTGAATGAGAAACCCACGCGTACGGAGTTCAGATGGCAGGC
TTCCTGGATAACTTCCGATGGCCGGAGTGCGAGTGTATTGACTGGAGTGAGCGCAGGAACACGG
TAGCCTCCGTGGTTGCAGGAATCTTGTTCTTTACAGGCTGGTGGATAATGATCGATGCGGCCGT
GGTGTATCCTAAGCCTGAGCAACTAAACCACGCCTTCCACACGTGTGGTGTCTTCTCCACGCTG
GCCTTCTTCATGATAAATGCTGTATCCAATGCCCAGGTGCGAGGTGACAGCTATGAGAGCGGCT
GCTTAGGAAGAACTGGAGCTCGGGTCTGGCTCTTCATTGGTTTCATGCTGATGTTCGGATCGCT
TATCGCCTCCATGTGGATCCTTTTTGGTGCATATGTTACTCAAAATATTGATGTTTACCCTGGA
CTAGCTGTGTTCTTTCAAAATGCACTTATATTTTTTAGCACTCTGATCTACAAATTCGGAAGAA
CTGAAGAGCTCTGGGCCTGAGATCACCTCACACACACCTCACCTTCCTCTTGTTCCACGCCTAG
CTTCCTTTTTCTCTGGTATAGTCTACATATTGCCAAATGAAGCACATCATGTGCTCAGAGGTTT
CTGTCTTCATAGTTTTGTGCCCTGAGTTTTGAATTGCTTTTGAAAATGTCTATCTTGGTTTTTC
ATCAACTAGACAAGTTAATATGATAGAATATATCATCACTACATGTACATGATACTGAATGTCA
GGTTTTTATTCCCAAGACTAAGATTGGTGAGTCCTGAGCCAGGGTTATATTGTCTTGGTGTTAG
AGGTAAATACTCTGACTTGGTGTCTCTGAGGTTTGAAAACGTGCAAAATACACAGCTCTGTGTC
TCTGGAGGCCCTGAGCTGTTAATGAAGGCATTTCTGCCAGGTGTAACTTACTTTGGCTTAGAAA
TGAGTTGTTGTTTTTTTTTAAAGGAAAAATGTTTGTGCATATGTTTTAAAGAGCTGGACTTTTT
ATATGAAGATTTTTTAAATGCCCAAAGGACTAGTTTGAAAGCCCCCTTTACAAAGAATTCCTCT
AACTTGACTTTTGCTTGAGAAGGGATAACACAGAGATAAACTCCATTTTGTGGAAAGATGGTAG
GCAGCTGAGCCATGTGTCCCCATCTTACCAAGCTACTTCGATGCCCGGGTGTCAAGGACGGCTT
GCCACAATCTGGCATTACACACGGCAAGGGACCCTGCTGCAGGTGCTGTGTAGACATGGCCAAG
TGGAATAACTAGCTAAGACCATCCCGAAGGGCGCTGTGACCTACAGAAGGTCAGACGCTCGACT
CACTTCATTCTGGACTCCCTCTGCTGTCTCAGGCTCTCAGGCTCTCAGGCTCTGGGTGACACTC
CACACCAGACGCTCCTTCCCTGTGTTTGACGCTGCGCTCGCACCGTGTATATTTCTGTGGGCCT
TTCCCTGGGGTCAGGATTTTGTGTTGCACTTTTAACCCCAGAGGACCTTTCTAAGACCTTGTGC
TGTAAACAGTAGTGAGGATGGCAGTGGTGCACCTTCTGACTCTGGCCTCACCTTACTTAGCAGT
TCTCAGAGAGGCCCCTCCAAGCACAGCGTGTGAAGCAGCTGCTGATCGCTGTGCCCATTCTGAT
GCATCTTGCTTCACTGTTTTCCCGTCAGTCCCTCAAAAGGCCAGCTTTGTCTTGCTTCCAGCAA
ACTACAGAGCTAACGACACGTTTCCATTCATAGAACATGCAGTGAGTGTCCCTCTCACACTGCT
GAAGTTAGGTGTGTGGGGGACGTGGACCTCTCACACACGCTGCAGTTAGGTGTGGGGGACGCAA
AACACAGCCTGGCTCTGTCCATTCTCACTGTCCAAGATGCGCTCATAAACAAGGAGAGGACGCA
CTGGACCACAGCATGCGCATGCAGAGGTTTATGACGGGTAGCCCTGAGGACCGACTGGAAATGC
TGGTGGCTTCCTCTCTATTCATGAATTTTGTTTTAATTGTGAGCAAATCTGTTGATTTCCTGTT
TGTTGTTTCATTAAACAAGAGAGATGACATTAGTATCCTCATAGATATTATGAGTCAGAATTCT
TGGTAATCATCTAAATTCACACAGTTCTCTTAATAAAGCTCTCAAGCTCAA

hide sequence

RefSeq Acc Id:

XM_039088458 ⟹ XP_038944386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,290,805 - 44,323,613 (-)	NCBI
mRatBN7.2	11	30,804,835 - 30,837,661 (-)	NCBI

RefSeq Acc Id:

XM_063270609 ⟹ XP_063126679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,290,805 - 44,323,626 (-)	NCBI

RefSeq Acc Id:

XM_063270610 ⟹ XP_063126680

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,290,805 - 44,323,650 (-)	NCBI

RefSeq Acc Id:

XM_063270611 ⟹ XP_063126681

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,290,805 - 44,323,583 (-)	NCBI

RefSeq Acc Id:

XM_063270612 ⟹ XP_063126682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,290,805 - 44,323,603 (-)	NCBI

RefSeq Acc Id:

XM_063270613 ⟹ XP_063126683

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	44,290,805 - 44,315,423 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020185	(Get FASTA)	NCBI Sequence Viewer
	XP_006248128	(Get FASTA)	NCBI Sequence Viewer
	XP_006248129	(Get FASTA)	NCBI Sequence Viewer
	XP_006248130	(Get FASTA)	NCBI Sequence Viewer
	XP_017453514	(Get FASTA)	NCBI Sequence Viewer
	XP_038944386	(Get FASTA)	NCBI Sequence Viewer
	XP_063126679	(Get FASTA)	NCBI Sequence Viewer
	XP_063126680	(Get FASTA)	NCBI Sequence Viewer
	XP_063126681	(Get FASTA)	NCBI Sequence Viewer
	XP_063126682	(Get FASTA)	NCBI Sequence Viewer
	XP_063126683	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91349	(Get FASTA)	NCBI Sequence Viewer
	EDM10727	(Get FASTA)	NCBI Sequence Viewer
	EDM10728	(Get FASTA)	NCBI Sequence Viewer
	EDM10729	(Get FASTA)	NCBI Sequence Viewer
	EDM10730	(Get FASTA)	NCBI Sequence Viewer
	EDM10731	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002775
	ENSRNOP00000002775.5

RefSeq Acc Id:	NP_001020185 ⟸ NM_001025014
- UniProtKB:	Q5BJS6 (UniProtKB/TrEMBL), A6JLG6 (UniProtKB/TrEMBL), A6JLG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGFLDNFRWPECECIDWSERRNTVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVF STLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNIDV YPGLAVFFQNALIFFSTLIYKFGRTEELWA hide sequence

RefSeq Acc Id:	XP_006248128 ⟸ XM_006248066
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJS6 (UniProtKB/TrEMBL), A6JLG6 (UniProtKB/TrEMBL), A6JLG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGFLDNFRWPECECIDWSERRNTVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVF STLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNIDV YPGLAVFFQNALIFFSTLIYKFGRTEELWA hide sequence

RefSeq Acc Id:	XP_006248130 ⟸ XM_006248068
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJS6 (UniProtKB/TrEMBL), A6JLG6 (UniProtKB/TrEMBL), A6JLG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGFLDNFRWPECECIDWSERRNTVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVF STLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNIDV YPGLAVFFQNALIFFSTLIYKFGRTEELWA hide sequence

RefSeq Acc Id:	XP_006248129 ⟸ XM_006248067
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJS6 (UniProtKB/TrEMBL), A6JLG6 (UniProtKB/TrEMBL), A6JLG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGFLDNFRWPECECIDWSERRNTVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVF STLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNIDV YPGLAVFFQNALIFFSTLIYKFGRTEELWA hide sequence

RefSeq Acc Id:	XP_017453514 ⟸ XM_017598025
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJS6 (UniProtKB/TrEMBL), A6JLG6 (UniProtKB/TrEMBL), A6JLG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGFLDNFRWPECECIDWSERRNTVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVF STLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNIDV YPGLAVFFQNALIFFSTLIYKFGRTEELWA hide sequence

Ensembl Acc Id:

ENSRNOP00000002775 ⟸ ENSRNOT00000002775

RefSeq Acc Id:	XP_038944386 ⟸ XM_039088458
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJS6 (UniProtKB/TrEMBL), A6JLG6 (UniProtKB/TrEMBL), A6JLG5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126680 ⟸ XM_063270610
- Peptide Label:	isoform X1
- UniProtKB:	A6JLG5 (UniProtKB/TrEMBL), A6JLG6 (UniProtKB/TrEMBL), Q5BJS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126679 ⟸ XM_063270609
- Peptide Label:	isoform X1
- UniProtKB:	A6JLG5 (UniProtKB/TrEMBL), A6JLG6 (UniProtKB/TrEMBL), Q5BJS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126682 ⟸ XM_063270612
- Peptide Label:	isoform X1
- UniProtKB:	A6JLG5 (UniProtKB/TrEMBL), A6JLG6 (UniProtKB/TrEMBL), Q5BJS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126681 ⟸ XM_063270611
- Peptide Label:	isoform X1
- UniProtKB:	A6JLG5 (UniProtKB/TrEMBL), A6JLG6 (UniProtKB/TrEMBL), Q5BJS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126683 ⟸ XM_063270613
- Peptide Label:	isoform X1
- UniProtKB:	A6JLG5 (UniProtKB/TrEMBL), A6JLG6 (UniProtKB/TrEMBL), Q5BJS6 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5BJS6-F1-model_v2	AlphaFold	Q5BJS6	1-158	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698057

Promoter ID:

EPDNEW_R8582

Type:

initiation region

Name:

Tmem50b_1

Description:

transmembrane protein 50B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	31,752,240 - 31,752,300	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307561	AgrOrtholog
BioCyc Gene	G2FUF-21880	BioCyc
Ensembl Genes	ENSRNOG00000002028	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000002775	ENTREZGENE
	ENSRNOT00000002775.7	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7316764	IMAGE-MGC_LOAD
InterPro	UPF0220	UniProtKB/TrEMBL
KEGG Report	rno:360698	UniProtKB/TrEMBL
MGC_CLONE	MGC:109374	IMAGE-MGC_LOAD
NCBI Gene	360698	ENTREZGENE
PANTHER	UPF0220	UniProtKB/TrEMBL
Pfam	UPF0220	UniProtKB/TrEMBL
PhenoGen	Tmem50b	PhenoGen
RatGTEx	ENSRNOG00000002028	RatGTEx
UniProt	A6JLG2_RAT	UniProtKB/TrEMBL
	A6JLG5	ENTREZGENE, UniProtKB/TrEMBL
	A6JLG6	ENTREZGENE, UniProtKB/TrEMBL
	Q5BJS6	ENTREZGENE
UniProt Secondary	Q5BJS6	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Tmem50b	transmembrane protein 50B	RGD1307561	similar to RIKEN cDNA B230114J08	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1307561	similar to RIKEN cDNA B230114J08	RGD1307561_predicted	similar to RIKEN cDNA B230114J08 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1307561_predicted	similar to RIKEN cDNA B230114J08 (predicted)	LOC360698_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360698_predicted	similar to RIKEN cDNA B230114J08 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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