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Gene: Gapvd1 (GTPase activating protein and VPS9 domains 1) Rattus norvegicus

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Symbol:

Gapvd1

Name:

GTPase activating protein and VPS9 domains 1

RGD ID:

1307479

Description:

Predicted to enable GTPase activating protein binding activity; guanyl-nucleotide exchange factor activity; and small GTPase binding activity. Predicted to be involved in regulation of protein transport. Predicted to be located in endosome and membrane. Predicted to be active in cytosol and endocytic vesicle. Orthologous to human GAPVD1 (GTPase activating protein and VPS9 domains 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GTPase-activating protein and VPS9 domain-containing protein 1; LOC311880; RGD1307479; similar to KIAA1521 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	38,365,854 - 38,439,403 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	38,365,854 - 38,439,390 (-)	Ensembl				GRCr8
mRatBN7.2	3	17,968,345 - 18,041,888 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	17,969,599 - 18,055,218 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	13,751,572 - 13,825,573 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	13,753,165 - 13,824,870 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	19,071,797 - 19,157,428 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	13,695,149 - 13,769,982 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	12,689,639 - 12,763,753 (-)	NCBI		Celera
RGSC_v3.1	3	13,592,436 - 13,666,436 (-)	NCBI
Cytogenetic Map	3	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-pinene (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

cisplatin (ISO)

dibutyl phthalate (EXP)

diethylstilbestrol (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

ivermectin (ISO)

methapyrilene (ISO)

methidathion (ISO)

methotrexate (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

propiconazole (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

topotecan (EXP)

Tributyltin oxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

endocytosis (IEA)

regulation of protein transport (IEA,ISO)

vesicle-mediated transport (IEA)

Cellular Component

cytosol (IBA,IEA,ISO)

early endosome (IEA)

endocytic vesicle (IBA)

membrane (IEA)

plasma membrane (IEA,ISO)

Molecular Function

GTPase activating protein binding (IEA,ISO)

GTPase activator activity (IEA)

guanyl-nucleotide exchange factor activity (IBA,IEA,ISO)

protein binding (ISO)

small GTPase binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:16410077	PMID:17189207	PMID:25468996

Genomics

Comparative Map Data

Gapvd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	38,365,854 - 38,439,403 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	38,365,854 - 38,439,390 (-)	Ensembl				GRCr8
mRatBN7.2	3	17,968,345 - 18,041,888 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	17,969,599 - 18,055,218 (-)	Ensembl				mRatBN7.2
Rnor_6.0	3	13,751,572 - 13,825,573 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	13,753,165 - 13,824,870 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	19,071,797 - 19,157,428 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	13,695,149 - 13,769,982 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	12,689,639 - 12,763,753 (-)	NCBI		Celera
RGSC_v3.1	3	13,592,436 - 13,666,436 (-)	NCBI
Cytogenetic Map	3	p11	NCBI

GAPVD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	125,261,826 - 125,367,207 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	125,261,780 - 125,367,207 (+)	Ensembl			hg38	GRCh38
GRCh37	9	128,024,105 - 128,129,486 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	127,063,932 - 127,167,111 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	9	98,672,084 - 98,776,400 (+)	NCBI		Celera
Cytogenetic Map	9	q33.3	NCBI
HuRef	9	97,636,531 - 97,740,194 (+)	NCBI		HuRef
CHM1_1	9	128,173,842 - 128,276,963 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	137,460,127 - 137,566,391 (+)	NCBI		T2T-CHM13v2.0

Gapvd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	34,566,190 - 34,645,297 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	34,564,606 - 34,645,244 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	34,676,178 - 34,755,285 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	34,674,594 - 34,755,232 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	34,532,487 - 34,610,752 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	34,498,976 - 34,577,241 (-)	NCBI		MGSCv36	mm8
Celera	2	34,376,782 - 34,455,073 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	22.87	NCBI

Gapvd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	2,946,553 - 3,046,479 (-)	Ensembl
ChiLan1.0	NW_004955419	2,947,128 - 3,046,230 (-)	NCBI	ChiLan1.0	ChiLan1.0

GAPVD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	13,992,280 - 14,121,888 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	13,994,628 - 14,124,236 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	96,377,209 - 96,486,592 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	124,937,032 - 124,998,916 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	124,935,407 - 124,998,916 (+)	Ensembl			panPan2	panpan1.1

GAPVD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	57,751,988 - 57,836,526 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	57,756,234 - 57,802,174 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	56,952,768 - 57,036,237 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	58,673,550 - 58,757,045 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	58,674,040 - 58,757,060 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	57,431,747 - 57,515,213 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	57,748,060 - 57,831,691 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	57,839,051 - 57,922,598 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gapvd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	193,625,264 - 193,687,721 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	13,399,769 - 13,456,252 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	13,393,800 - 13,454,007 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GAPVD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	265,948,083 - 266,028,533 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	265,948,067 - 266,030,203 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	299,771,748 - 299,977,645 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GAPVD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	12,795,200 - 12,908,152 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	12,794,528 - 12,863,689 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666079	3,213,296 - 3,321,757 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gapvd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	9,878,227 - 9,970,666 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	9,878,366 - 9,970,756 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gapvd1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	899,027 - 973,180 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gapvd1
830 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	108
Count of miRNA genes:	69
Interacting mature miRNAs:	71
Transcripts:	ENSRNOT00000024599, ENSRNOT00000066961
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
11528620	Bss113	Bone structure and strength QTL 113	9.75	2e-10	femur morphology trait (VT:0000559)	femoral neck width (CMO:0001695)	3	36888342	39639105	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	37772258	55937853	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	37796919	53640235	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	37796919	82796919	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	37363734	82363734	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	37796919	47904329	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	37796919	59119581	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

RH131385

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	17,969,614 - 17,969,800 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	13,752,847 - 13,753,032	NCBI	Rnor6.0
Rnor_5.0	3	19,073,072 - 19,073,257	UniSTS	Rnor5.0
RGSC_v3.4	3	13,695,641 - 13,695,826	UniSTS	RGSC3.4
Celera	3	12,690,914 - 12,691,099	UniSTS
RH 3.4 Map	3	147.0	UniSTS
Cytogenetic Map	3	p11	UniSTS

RH138088

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	18,016,632 - 18,016,762 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	13,799,684 - 13,799,813	NCBI	Rnor6.0
Rnor_5.0	3	19,119,507 - 19,119,636	UniSTS	Rnor5.0
RGSC_v3.4	3	13,744,652 - 13,744,781	UniSTS	RGSC3.4
Celera	3	12,737,906 - 12,738,035	UniSTS
RH 3.4 Map	3	147.0	UniSTS
Cytogenetic Map	3	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066961 ⟹ ENSRNOP00000063504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	38,365,854 - 38,439,390 (-)	Ensembl
mRatBN7.2 Ensembl	3	17,969,599 - 18,042,915 (-)	Ensembl
Rnor_6.0 Ensembl	3	13,753,165 - 13,824,870 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096520 ⟹ ENSRNOP00000082105

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	38,365,854 - 38,439,390 (-)	Ensembl
mRatBN7.2 Ensembl	3	17,969,599 - 18,055,218 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112773 ⟹ ENSRNOP00000077706

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	38,365,854 - 38,439,390 (-)	Ensembl
mRatBN7.2 Ensembl	3	17,969,599 - 18,052,865 (-)	Ensembl

RefSeq Acc Id:

NM_001427683 ⟹ NP_001414612

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	38,365,854 - 38,439,390 (-)	NCBI

RefSeq Acc Id:

XM_006234027 ⟹ XP_006234089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	38,365,859 - 38,439,403 (-)	NCBI
mRatBN7.2	3	17,968,345 - 18,041,888 (-)	NCBI
Rnor_6.0	3	13,751,572 - 13,825,573 (-)	NCBI
Rnor_5.0	3	19,071,797 - 19,157,428 (-)	NCBI

Sequence:

show sequence

CAATTCTCCTCGCTTTCAGGCAGCATGACTACTAGCAAGGGCAGGAAAGACAAGGGAAGCATTT
CAGCTCTGCAGGAGGCGAACTTTCTAACATTTAGAGCTGTCCAACAGAGAGGAGCAGGCTGCAC
TTCTTAGGGGTAGTGAGCTGACTGATACAGGAACATCCAAAACAGAAGTGAGACGGGAGGCGGT
CTGGCTCAACCTGCAGGAGGATATTCCTGCCTGACTGGGAGCTGCACGGATGACCTTTAAGCAC
CAGGTACATGGAAACGTGAGGGCGGGGGATCGGCGGACAGGTCCCAGCAAGGCGGTTCGCGACC
GGGAGCGGAAGGGCGGCCGCAGTCCGGACCACCGATCCCAGGGGCCCCCGCGGCGACGCGCACG
CGCACTGGTGAGGGGGCAGCGCCGCCGCAGGAGGCAGAGAAACCGACTGGCGATCTGTGGCGGC
GGCTGGGCGGCGGTGGCAGTTCGCAGCGAGGGCGACGGCTCCGAGGCTGAGTGGCCGTCCGGCG
AGGACCAGGGCGCCGTCCTCCGCATGACCTCACCGTGATCAACCTTTGTACCTTTTCCGAATTC
AAAGATGGTGAAGCTAGATATTCACACATTGGCCCACCACCTCAAGCAGGAGCGCTTATATGTG
AGCTCTGAGAAACAGCTCATTCAGAGGCTAAATGCAGATGTGCTGAAGACAGCCGAGAAGCTGT
ATCGGACAGCGTGGATTGCAAAGCAGCAGAGGATTAATTTGGATCGTCTCATTATAACCAGCGC
TGAAGCTTCCCCTGCTGAGTGTTGCCAGCATGCTAAGATTTTGGAAGACACACAGTTTGTTGAT
GGATATAAGCAACTGGGATTTCAGGAAACAGCCTATGGAGAATTCCTGAGTCGGTTAAGAGAGA
ATCCGCGTCTTATTGCCTCCTCTTTGGTTGCTGGAGAAAAACTCAATCAGGAGAACACACAAAG
TGTTATCTACACTGTTTTTACCTCCTTGTATGGCAACTGTATTATGCAAGAAGATGAAAGCTAC
CTCCTTCAGGTTTTACGATACTTGATTGAATTCGAACTTAAAGAAAGTGACAACCCCAGGCGCC
TTTTGAGGAGAGGAACCTGTGCCTTCAGCATCTTATTTAAACTTTTTTCTGAAGGACTGTTTTC
TGCCAAACTTTTCCTTACGGCTACTTTACATGAGCCAATCATGCAGCTCCTTGTAGAAGATGAG
GACCACCTGGAGACAGATCCAAACAAGCTAATCGAGAGGTTCTCTCCAGCCCAGCAGGAAAAAC
TCTTTGGAGAGAAAGGCTCAGATAGATTTAGGCAAAAGGTTCAAGAAATGGTAGATTCCAATGA
GGCTAAACTAGTGGCTTTGGTGAACAAATTTATTGGTTACCTTAAGCAAAATACGTACTGCTTT
CCACATAGTTTGAGGTGGATTGTATCACAGATGTACAAAACTCTTTCTTGTGTAGACAGATTGG
AGGTTGGGGAGGTCAGAGCAATGTGTACGGATCTTCTGTTGGCTTGCTTCATTTGTCCCGCAGT
TGTCAATCCAGAACAGTATGGAATAATATCTGATGCTCCTATTAATGAGGTGGCAAGATTTAAC
CTGATGCAGGTTGGCCGCCTTTTGCAGCAGTTAGCAATGACTGGCACTGAGGAAGGAGATCCCC
GGACCAAAAATAGCCTTGGGAAATTTGACAAAGGCTGTGTCGCTGCTTTCCTTGATGTCGTAAT
CGGAGGCCGTGCAGTAGAGACTCCACCAATGTCCTCTGTTAATCTTCTGGAAGGCTTGAGCAGA
ACTGTGGTGTATATAAGCTACAGTCAGCTTATTACTCTGGTAAATTTTATGAAGAGTGTGATGT
CTGGAGATCAACTGAAAGAAGATAGAATGGCTCTTGACAATTTGTTGGCAAACTTGCCCCAGGC
TAAGCCCGGGAAGAGCAGCAGTCTAGACATGACTCCCTACAGCACTCCTCAGATGTCTCCAGCA
ACCACTCCAGCCAATAAAAAGAATCGGCTACCTATAGGACAACAGTTAGCAGCCATCACTGCCT
GGGATTCTTCAGCCACCAATCTTACCGCTCACATTCCTCTAGTAACCCCGTTTGCAACTCGGAG
CCGAAGCCGAAGTAATATGCTAATGGACCTACATATGGATCATGAAGGGTCATCTCAAGAAACC
ATCCAGGAGGTGCAGCCAGAAGAGGTGCTGGTCATTTCCTTAGGGACAGGTCCTCAGCTCACTC
CAGGGATGATGTCAGAAAATGAGGTTCTAAACATGCAGCTTTCGGACGGAGGACAAGGAGATGT
CCCTGTTGATGAAAACAAACTCCACGGTAAACCTGATAAAACCTTGCGCTTTTCCCTGTGCAGT
GATAATCTGGAAGGCATATCTGAAGGTCCTTCCAATCGCTCTAATTCAGTGTCTTCTCTCGACC
TGGAAGGAGAGTCTGTATCTGAACTTGGGGCAGGACCTTCTGGGAGTAATGGAGTTGAAGCACT
GCAACTGTTAGAACACGAGCAAGCTACAACACAAGATAATCTTGATGATAAACTGAGGAAGTTT
GAGATTCGGGATATGATGGGACTAACAGATGACAGGGACATATCCGAGACAGTGAGTGAGACCT
GGAGCACCGATGTCCTAGGAAGTGACTTCGACCCAAACGTTGATGAAGACCGTTTGCAGGAGAT
TGCAGGTGCAGCAGCAGAGAATGTGCTGGGCAGCTTGCTGTGCCTTCCAGGTTCCGGCTCAGTT
CTCCTTGACCCTTGCACTGGCTCGACCATATCAGAGACCACAAGTGAAGCTTGGAGTGTAGAGG
TGTTGCCCAGTGACTCAGAGGCTCCAGACTTAAAGCAGGAAGAGCGCCTCCAAGAGCTGGAGAG
CTGTTCTGGACTGGGCAGTACATCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCCCAGC
ACACCAGGCCTCAGTGTTGTGTCCGGCATAAGCGCTACATCGGAGGATATTCCCAATAAGATCG
AAGACCTGCGATCTGAGTGCAGCTCTGATTTTGGGGGTAAAGATTCTGTAACTAGTCCAGATGT
GGATGACATAGCCCATGGCGCCCACCAGCTGACCTCTCCTCCCTCTCAGTCAGAGTCTCTGCTT
GCCATGTTTGACCCACTGTCTTCACATGAAGGGGCCTCTGCTGTGGTAAGGCCGAAGGTTCACT
ATGCCCGGCCCTCGCATCCACCTCCAGATCCTCCAATCCTGGAAGGTGCAGTGGGAGGAAATGA
AGCCAGGCTGCCCAACTTCGGTTCTCACGTTTTAACTGCAGCTGAAATGGAGGCGTTCAGGCAG
AGGCACTCTTACCCTGAGAGACTAGTGCGCAGCAGAAGCTCTGATATAGTGTCTTGTGTGCGGC
GGCCCATGAGTGACCCCAGCTGGAACCGACGTCCAGGGAATGAAGAACTTCCACCAGCTGCAGC
CACTGGTGCTACTTCTTTGGTGGCTGCACCTCACTCGTCATCTTCGTCCCCGAGTAAGGACTCT
TCAAGAGGAGAGACTGAGGAGCGCAAGGACAGTGACGATGAGAGGTCAGACAGGAGCAGGCCTT
GGTGGAGAAAGCGTTTTGTATCAGCTATGCCTAAAGCTCCTATACCATTTAGAAAGAAAGAAAA
ACAAGAAAAAGACAAAGATGATCTGGGGCCTGACAGATTCTCAACACTCACAGACGAGCCCAGC
CCTAGGCTCAGTGCACAAGCTCAGGTTGCGGAAGACATTCTGGACAAATACCGAAATGCCATTA
AACGGACCAGCCCCAGTGAAGGAGCACTGGCAAATGATGAGAGTACAGAGGTCATGGGTGATGG
TGAAAGTGCTCACGATTCTCCTCGTGAGGAGCTGCAGAACATGTCAGCTGACGACCTCCCAGAC
TCTGCGAGCCAAGCAGCTCACCCTCAGGACTCTGCCCTCTCTTACAGAGATGTGAAAAAGAAGC
TGAGGCTCGCACTTTGCTCTGCAGACTCTGTGGCCTTCCCCATGCTGACTCATTCAACAAGGAA
CGGACTGCCAGAGCACACAGACCCGGAAGATAATGAAATTGTGTGCTTCTTAAAAGTTCAAATA
GCTGAAGCAATTAACTTACAAGATAAGAGCTTAATGGCTCAGCTTCAAGAAACAATGCGCTGTG
TCTGCCGCTTTGACAATAGGACTTGTAGGAAGTTGCTGGCATCCATTGCTGAAGACTACAGAAA
AAGAGCTCCGTATATTGCGTATCTCACCCGCTGTCGGCAAGGACTGCAGACCACACAGGCTCAC
CTCGAAAGACTCTTGCAAAGAGTTTTGCGGGACAAAGAGGTGGCCAATCGGTATTTTACCACCG
TCTGTGTGCGGTTACTGCTTGAGAGCAAAGAAAAGAAGATCAGGGAGTTCATTCAAGACTTTCA
GAAACTTACGGCTGCTGATGATAAGACGGCTCAAGTGGAGGATTTCCTACAGTTCCTGTATGGT
GCGATGGCGCAGGATGTCATATGGCAGAATGCCAGCGAGGAGCAGCTGCAGGATGCCCAGCTGG
CCATCGAGCGGAGCGTGATGAATCGGATCTTCAAGCTTGCTTTCTACCCTAACCAGGATGGGGA
CATACTGCGTGACCAGGTTCTGCATGAACACATCCAGAGATTATCTAAAGTAGTGACTGCAAAC
CACAGAGCTCTGCAGATCCCAGAGGTCTATCTTCGTGAGGCACCGTGGCCATCTGCACAGTCAG
AAATCAGGACTATTAGTGCTTACAAGACGCCCCGGGACAAAGTGCAGTGCATCCTGAGAATGTG
CTCCACTATCATGAACCTCCTGAGTCTGGCCAATGAGGACTCTGTCCCCGGGGCAGATGACTTT
GTCCCCGTGTTGGTGTTTGTGTTGATAAAGGCAAACCCACCCTGCCTGCTGTCCACCGTGCAGT
ACATCAGCAGCTTCTATGCCAGCTGTCTGTCTGGAGAGGAGTCCTACTGGTGGATGCAGTTCAC
TGCGGCCGTGGAGTTTATTAAAACCATCGATGACAGAAAGTGACCAAGACCAGGCCCACCAAGG
CAGCAGACTGTAGCCAGGAAACAGATCTCTAAGAGTGTGTAGCAGCTTCCTTGAAAGCTGAACA
CCGTTTTGTCTAAGGCTGTACAGATGTCTCCTCACGGCTCTTCCTAGCAGACTAACAAGCTAAC
AGCAGGTCCTCGCTCCTCTCGGCCTTTCTGAGTTGCCTATTTTATTTCCTGTCCCCACGTAGAG
TAGTACTACAAAAGGGACCATGTTTTTCAGGTGTTTTAAATTTTTAAAAACCACAACAGAATCT
TTTAGGGAACATCTAGATCTCGGTTCATGAGTTCCCTGTCCGTCGCTTTCATTTCTGGAAAGAA
CAGTGTGCCTCTTCCAAGTCTCTGTGTGAGCGTGCTCGCTCAGGAGGCCACCTGCACTGAGGGT
CTCGGAGATACAGTCTCCTAAGGAAGAGCTGAGAAGGACATGTAGATGTAATATATATTTATAT
TTGATGTGATATGACATCTTCAGACTCTAATAAACAAGAGCAGCTGCTGAGAGTAGCGTGACAT
TCCCTCTGTGACATGGCTTCCTTGACAAAACTTAAGCTGAGCTCAAAAGCAAAAGCAGAGCTAT
TTATTAGTGTGGACACAGTTTATCACTCTCCATGTGTGCAGTTTGATGGGGAAGTCATGTAGGT
GTGGGCCACCATGGTATATGTTGAGCCTGCACACTGGGGCAGGCTCCACCATGCATTGCCCAGG
GCGAGCAGTGCGTGGCAGGGTGCACGTGCGTCCTTCCTTCACACCTGCTCACCGAGCCTCAGCC
GTCCTCCGTCTCTGAGGATGGTTCACATCGAGTGCACAGACCAGGAATTCAGTGAATGTCATTT
TTTAAAACTCATTTGTATCGTCTGCTCTACTGATCCAGGTTTTACTAGTGTTAAGCGATTTTGA
TCAGCCACACTATTCTATGGGAAATCTATTTTGGCGGTTTCTGTGCCTTTATTGCCCTCTTCTG
GAAAAAAAAAACAAAAAACAAAAAAAATCGTGTCTGTGGTTTGGTCTGCGCTGTACATCAGTAA
TTAATCAGGCATGGGCGTTGGTGCCTGAGCGGCTGCCCAGGGAGGCACACCAGAGCTTCAAGCA
CAAGTCCTGTACATAGGCCATCGCCCATGGTTTCACCTTGTATGTTTCCTAAACCTGTTTAGCT
TTTTTGACAAATGCTGCAATCTCATACTTCCGAGGCCCTTGTGGCAGCAATACAGGCATCTTCT
AAGGGGCCCGTGGCAGCCAGCCGTGAGCAGACGGGTAGAGGCCGTGTGCTCCCGCTCTGAGTAC
TGGGCCACACTGTGCCAAAAGAAGCTGGGCTTTCTCATGCTCCCCTCTCCTTCCCTTTCATCCC
CAAGACGGGTTTGCACAGGCCTGGGAGATGTGCTTTCTGCCTGTTAGGGAGAGATCAGAACTAA
ACTGGCATCACAGACACCCGTTCAGATGTTGGTCAGGAAATCTGTGTACTTCATGGGCTGTCGT
CCACCTTGCCTTGGGGTTAGAAGTCACTTCCCTTCCTTAGTACATTGCAAGCCAAACTGTGACT
CGGTTCTGCAGCTAGAAGGGAGTCTGACATCTACGTCAGCGCTGATTCAATAAATGTTAAGTCA
ACAGAAGATTTCGAATAGTTGGAATTAATTCATTGTTATGGGACTTAACTTGTAAATCAATGAG
AGATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAATGGTAGCTAAATATATTC
CATGTTATCACTGTGGAAATAAATATGAAGATGTGGACATTG

hide sequence

RefSeq Acc Id:

XM_008761792 ⟹ XP_008760014

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	38,365,859 - 38,439,403 (-)	NCBI
mRatBN7.2	3	17,970,131 - 18,041,888 (-)	NCBI
Rnor_6.0	3	13,751,572 - 13,825,572 (-)	NCBI

Sequence:

show sequence

AATTCTCCTCGCTTTCAGGCAGCATGACTACTAGCAAGGGCAGGAAAGACAAGGGAAGCATTTC
AGCTCTGCAGGAGGCGAACTTTCTAACATTTAGAGCTGTCCAACAGAGAGGAGCAGGCTGCACT
TCTTAGGGGTAGTGAGCTGACTGATACAGGAACATCCAAAACAGAAGTGAGACGGGAGGCGGTC
TGGCTCAACCTGCAGGAGGATATTCCTGCCTGACTGGGAGCTGCACGGATGACCTTTAAGCACC
AGGTACATGGAAACGTGAGGGCGGGGGATCGGCGGACAGGTCCCAGCAAGGCGGTTCGCGACCG
GGAGCGGAAGGGCGGCCGCAGTCCGGACCACCGATCCCAGGGGCCCCCGCGGCGACGCGCACGC
GCACTGGTGAGGGGGCAGCGCCGCCGCAGGAGGCAGAGAAACCGACTGGCGATCTGTGGCGGCG
GCTGGGCGGCGGTGGCAGTTCGCAGCGAGGGCGACGGCTCCGAGGCTGAGTGGCCGTCCGGCGA
GGACCAGGGCGCCGTCCTCCGCATGACCTCACCGTGATCAACCTTTGTACCTTTTCCGAATTCA
AAGATGGTGAAGCTAGATATTCACACATTGGCCCACCACCTCAAGCAGGAGCGCTTATATGTGA
GCTCTGAGAAACAGCTCATTCAGAGGCTAAATGCAGATGTGCTGAAGACAGCCGAGAAGCTGTA
TCGGACAGCGTGGATTGCAAAGCAGCAGAGGATTAATTTGGATCGTCTCATTATAACCAGCGCT
GAAGCTTCCCCTGCTGAGTGTTGCCAGCATGCTAAGATTTTGGAAGACACACAGTTTGTTGATG
GATATAAGCAACTGGGATTTCAGGAAACAGCCTATGGAGAATTCCTGAGTCGGTTAAGAGAGAA
TCCGCGTCTTATTGCCTCCTCTTTGGTTGCTGGAGAAAAACTCAATCAGGAGAACACACAAAGT
GTTATCTACACTGTTTTTACCTCCTTGTATGGCAACTGTATTATGCAAGAAGATGAAAGCTACC
TCCTTCAGGTTTTACGATACTTGATTGAATTCGAACTTAAAGAAAGTGACAACCCCAGGCGCCT
TTTGAGGAGAGGAACCTGTGCCTTCAGCATCTTATTTAAACTTTTTTCTGAAGGACTGTTTTCT
GCCAAACTTTTCCTTACGGCTACTTTACATGAGCCAATCATGCAGCTCCTTGTAGAAGATGAGG
ACCACCTGGAGACAGATCCAAACAAGCTAATCGAGAGGTTCTCTCCAGCCCAGCAGGAAAAACT
CTTTGGAGAGAAAGGCTCAGATAGATTTAGGCAAAAGGTTCAAGAAATGGTAGATTCCAATGAG
GCTAAACTAGTGGCTTTGGTGAACAAATTTATTGGTTACCTTAAGCAAAATACGTACTGCTTTC
CACATAGTTTGAGGTGGATTGTATCACAGATGTACAAAACTCTTTCTTGTGTAGACAGATTGGA
GGTTGGGGAGGTCAGAGCAATGTGTACGGATCTTCTGTTGGCTTGCTTCATTTGTCCCGCAGTT
GTCAATCCAGAACAGTATGGAATAATATCTGATGCTCCTATTAATGAGGTGGCAAGATTTAACC
TGATGCAGGTTGGCCGCCTTTTGCAGCAGTTAGCAATGACTGGCACTGAGGAAGGAGATCCCCG
GACCAAAAATAGCCTTGGGAAATTTGACAAAGGCTGTGTCGCTGCTTTCCTTGATGTCGTAATC
GGAGGCCGTGCAGTAGAGACTCCACCAATGTCCTCTGTTAATCTTCTGGAAGGCTTGAGCAGAA
CTGTGGTGTATATAAGCTACAGTCAGCTTATTACTCTGGTAAATTTTATGAAGAGTGTGATGTC
TGGAGATCAACTGAAAGAAGATAGAATGGCTCTTGACAATTTGTTGGCAAACTTGCCCCAGGCT
AAGCCCGGGAAGAGCAGCAGTCTAGACATGACTCCCTACAGCACTCCTCAGATGTCTCCAGCAA
CCACTCCAGCCAATAAAAAGAATCGGCTACCTATAGGACAACAGTTAGCAGCCATCACTGCCTG
GGATTCTTCAGCCACCAATCTTACCGCTCACATTCCTCTAGTAACCCCGTTTGCAACTCGGAGC
CGAAGCCGAAGTAATATGCTAATGGACCTACATATGGATCATGAAGGGTCATCTCAAGAAACCA
TCCAGGAGGTGCAGCCAGAAGAGGTGCTGGTCATTTCCTTAGGGACAGGTCCTCAGCTCACTCC
AGGGATGATGTCAGAAAATGAGGTTCTAAACATGCAGCTTTCGGACGGAGGACAAGGAGATGTC
CCTGTTGATGAAAACAAACTCCACGGTCCTTCCAATCGCTCTAATTCAGTGTCTTCTCTCGACC
TGGAAGGAGAGTCTGTATCTGAACTTGGGGCAGGACCTTCTGGGAGTAATGGAGTTGAAGCACT
GCAACTGTTAGAACACGAGCAAGCTACAACACAAGATAATCTTGATGATAAACTGAGGAAGTTT
GAGATTCGGGATATGATGGGACTAACAGATGACAGGGACATATCCGAGACAGTGAGTGAGACCT
GGAGCACCGATGTCCTAGGAAGTGACTTCGACCCAAACGTTGATGAAGACCGTTTGCAGGAGAT
TGCAGGTGCAGCAGCAGAGAATGTGCTGGGCAGCTTGCTGTGCCTTCCAGGTTCCGGCTCAGTT
CTCCTTGACCCTTGCACTGGCTCGACCATATCAGAGACCACAAGTGAAGCTTGGAGTGTAGAGG
TGTTGCCCAGTGACTCAGAGGCTCCAGACTTAAAGCAGGAAGAGCGCCTCCAAGAGCTGGAGAG
CTGTTCTGGACTGGGCAGTACATCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCCCAGC
ACACCAGGCCTCAGTGTTGTGTCCGGCATAAGCGCTACATCGGAGGATATTCCCAATAAGATCG
AAGACCTGCGATCTGAGTGCAGCTCTGATTTTGGGGGTAAAGATTCTGTAACTAGTCCAGATGT
GGATGACATAGCCCATGGCGCCCACCAGCTGACCTCTCCTCCCTCTCAGTCAGAGTCTCTGCTT
GCCATGTTTGACCCACTGTCTTCACATGAAGGGGCCTCTGCTGTGGTAAGGCCGAAGGTTCACT
ATGCCCGGCCCTCGCATCCACCTCCAGATCCTCCAATCCTGGAAGGTGCAGTGGGAGGAAATGA
AGCCAGGCTGCCCAACTTCGGTTCTCACGTTTTAACTGCAGCTGAAATGGAGGCGTTCAGGCAG
AGGCACTCTTACCCTGAGAGACTAGTGCGCAGCAGAAGCTCTGATATAGTGTCTTGTGTGCGGC
GGCCCATGAGTGACCCCAGCTGGAACCGACGTCCAGGGAATGAAGAACTTCCACCAGCTGCAGC
CACTGGTGCTACTTCTTTGGTGGCTGCACCTCACTCGTCATCTTCGTCCCCGAGTAAGGACTCT
TCAAGAGGAGAGACTGAGGAGCGCAAGGACAGTGACGATGAGAGGTCAGACAGGAGCAGGCCTT
GGTGGAGAAAGCGTTTTGTATCAGCTATGCCTAAAGCTCCTATACCATTTAGAAAGAAAGAAAA
ACAAGAAAAAGACAAAGATGATCTGGGGCCTGACAGATTCTCAACACTCACAGACGAGCCCAGC
CCTAGGCTCAGTGCACAAGCTCAGGTTGCGGAAGACATTCTGGACAAATACCGAAATGCCATTA
AACGGACCAGCCCCAGTGAAGGAGCACTGGCAAATGATGAGAGTACAGAGGTCATGGGTGATGG
TGAAAGTGCTCACGATTCTCCTCGTGAGGAGCTGCAGAACATGTCAGCTGACGACCTCCCAGAC
TCTGCGAGCCAAGCAGCTCACCCTCAGGACTCTGCCCTCTCTTACAGAGATGTGAAAAAGAAGC
TGAGGCTCGCACTTTGCTCTGCAGACTCTGTGGCCTTCCCCATGCTGACTCATTCAACAAGGAA
CGGACTGCCAGAGCACACAGACCCGGAAGATAATGAAATTGTGTGCTTCTTAAAAGTTCAAATA
GCTGAAGCAATTAACTTACAAGATAAGAGCTTAATGGCTCAGCTTCAAGAAACAATGCGCTGTG
TCTGCCGCTTTGACAATAGGACTTGTAGGAAGTTGCTGGCATCCATTGCTGAAGACTACAGAAA
AAGAGCTCCGTATATTGCGTATCTCACCCGCTGTCGGCAAGGACTGCAGACCACACAGGCTCAC
CTCGAAAGACTCTTGCAAAGAGTTTTGCGGGACAAAGAGGTGGCCAATCGGTATTTTACCACCG
TCTGTGTGCGGTTACTGCTTGAGAGCAAAGAAAAGAAGATCAGGGAGTTCATTCAAGACTTTCA
GAAACTTACGGCTGCTGATGATAAGACGGCTCAAGTGGAGGATTTCCTACAGTTCCTGTATGGT
GCGATGGCGCAGGATGTCATATGGCAGAATGCCAGCGAGGAGCAGCTGCAGGATGCCCAGCTGG
CCATCGAGCGGAGCGTGATGAATCGGATCTTCAAGCTTGCTTTCTACCCTAACCAGGATGGGGA
CATACTGCGTGACCAGGTTCTGCATGAACACATCCAGAGATTATCTAAAGTAGTGACTGCAAAC
CACAGAGCTCTGCAGATCCCAGAGGTCTATCTTCGTGAGGCACCGTGGCCATCTGCACAGTCAG
AAATCAGGACTATTAGTGCTTACAAGACGCCCCGGGACAAAGTGCAGTGCATCCTGAGAATGTG
CTCCACTATCATGAACCTCCTGAGTCTGGCCAATGAGGACTCTGTCCCCGGGGCAGATGACTTT
GTCCCCGTGTTGGTGTTTGTGTTGATAAAGGCAAACCCACCCTGCCTGCTGTCCACCGTGCAGT
ACATCAGCAGCTTCTATGCCAGCTGTCTGTCTGGAGAGGAGTCCTACTGGTGGATGCAGTTCAC
TGCGGCCGTGGAGTTTATTAAAACCATCGATGACAGAAAGTGACCAAGACCAGGCCCACCAAGG
CAGCAGACTGTAGCCAGGAAACAGATCTCTAAGAGTGTGTAGCAGCTTCCTTGAAAGCTGAACA
CCGTTTTGTCTAAGGCTGTACAGATGTCTCCTCACGGCTCTTCCTAGCAGACTAACAAGCTAAC
AGCAGGTCCTCGCTCCTCTCGGCCTTTCTGAGTTGCCTATTTTATTTCCTGTCCCCACGTAGAG
TAGTACTACAAAAGGGACCATGTTTTTCAGGTGTTTTAAATTTTTAAAAACCACAACAGAATCT
TTTAGGGAACATCTAGATCTCGGTTCATGAGTTCCCTGTCCGTCGCTTTCATTTCTGGAAAGAA
CAGTGTGCCTCTTCCAAGTCTCTGTGTGAGCGTGCTCGCTCAGGAGGCCACCTGCACTGAGGGT
CTCGGAGATACAGTCTCCTAAGGAAGAGCTGAGAAGGACATGTAGATGTAATATATATTTATAT
TTGATGTGATATGACATCTTCAGACTCTAATAAACAAGAGCAGCTGCTGAGAGTAGCGTGACAT
TCCCTCTGTGACATGGCTTCCTTGACAAAACTTAAGCTGAGCTCAAAAGCAAAAGCAGAGCTAT
TTATTAGTGTGGACACAGTTTATCACTCTCCATGTGTGCAGTTTGATGGGGAAGTCATGTAGGT
GTGGGCCACCATGGTATATGTTGAGCCTGCACACTGGGGCAGGCTCCACCATGCATTGCCCAGG
GCGAGCAGTGCGTGGCAGGGTGCACGTGCGTCCTTCCTTCACACCTGCTCACCGAGCCTCAGCC
GTCCTCCGTCTCTGAGGATGGTTCACATCGAGTGCACAGACCAGGAATTCAGTGAATGTCATTT
TTTAAAACTCATTTGTATCGTCTGCTCTACTGATCCAGGTTTTACTAGTGTTAAGCGATTTTGA
TCAGCCACACTATTCTATGGGAAATCTATTTTGGCGGTTTCTGTGCCTTTATTGCCCTCTTCTG
GAAAAAAAAAACAAAAAACAAAAAAAATCGTGTCTGTGGTTTGGTCTGCGCTGTACATCAGTAA
TTAATCAGGCATGGGCGTTGGTGCCTGAGCGGCTGCCCAGGGAGGCACACCAGAGCTTCAAGCA
CAAGTCCTGTACATAGGCCATCGCCCATGGTTTCACCTTGTATGTTTCCTAAACCTGTTTAGCT
TTTTTGACAAATGCTGCAATCTCATACTTCCGAGGCCCTTGTGGCAGCAATACAGGCATCTTCT
AAGGGGCCCGTGGCAGCCAGCCGTGAGCAGACGGGTAGAGGCCGTGTGCTCCCGCTCTGAGTAC
TGGGCCACACTGTGCCAAAAGAAGCTGGGCTTTCTCATGCTCCCCTCTCCTTCCCTTTCATCCC
CAAGACGGGTTTGCACAGGCCTGGGAGATGTGCTTTCTGCCTGTTAGGGAGAGATCAGAACTAA
ACTGGCATCACAGACACCCGTTCAGATGTTGGTCAGGAAATCTGTGTACTTCATGGGCTGTCGT
CCACCTTGCCTTGGGGTTAGAAGTCACTTCCCTTCCTTAGTACATTGCAAGCCAAACTGTGACT
CGGTTCTGCAGCTAGAAGGGAGTCTGACATCTACGTCAGCGCTGATTCAATAAATGTTAAGTCA
ACAGAAGATTTCGAATAGTTGGAATTAATTCATTGTTATGGGACTTAACTTGTAAATCAATGAG
AGATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTAATGGTAGCTAAATATATTC
CATGTTATCACTGTGGAAATAAATATGAAGATGTGGACATTG

hide sequence

RefSeq Acc Id:

XM_008761794 ⟹ XP_008760016

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	38,365,859 - 38,439,403 (-)	NCBI
mRatBN7.2	3	17,970,131 - 18,041,888 (-)	NCBI
Rnor_6.0	3	13,751,572 - 13,825,573 (-)	NCBI

Sequence:

show sequence

CAATTCTCCTCGCTTTCAGGCAGCATGACTACTAGCAAGGGCAGGAAAGACAAGGGAAGCATTT
CAGCTCTGCAGGAGGCGAACTTTCTAACATTTAGAGCTGTCCAACAGAGAGGAGCAGGCTGCAC
TTCTTAGGGGTAGTGAGCTGACTGATACAGGAACATCCAAAACAGAAGTGAGACGGGAGGCGGT
CTGGCTCAACCTGCAGGAGGATATTCCTGCCTGACTGGGAGCTGCACGGATGACCTTTAAGCAC
CAGGTACATGGAAACGTGAGGGCGGGGGATCGGCGGACAGGTCCCAGCAAGGCGGTTCGCGACC
GGGAGCGGAAGGGCGGCCGCAGTCCGGACCACCGATCCCAGGGGCCCCCGCGGCGACGCGCACG
CGCACTGGTGAGGGGGCAGCGCCGCCGCAGGAGGCAGAGAAACCGACTGGCGATCTGTGGCGGC
GGCTGGGCGGCGGTGGCAGTTCGCAGCGAGGGCGACGGCTCCGAGGCTGAGTGGCCGTCCGGCG
AGGACCAGGGCGCCGTCCTCCGCATGACCTCACCGTGATCAACCTTTGTACCTTTTCCGAATTC
AAAGATGGTGAAGCTAGATATTCACACATTGGCCCACCACCTCAAGCAGGAGCGCTTATATGTG
AGCTCTGAGAAACAGCTCATTCAGAGGCTAAATGCAGATGTGCTGAAGACAGCCGAGAAGCTGT
ATCGGACAGCGTGGATTGCAAAGCAGCAGAGGATTAATTTGGATCGTCTCATTATAACCAGCGC
TGAAGCTTCCCCTGCTGAGTGTTGCCAGCATGCTAAGATTTTGGAAGACACACAGTTTGTTGAT
GGATATAAGCAACTGGGATTTCAGGAAACAGCCTATGGAGAATTCCTGAGTCGGTTAAGAGAGA
ATCCGCGTCTTATTGCCTCCTCTTTGGTTGCTGGAGAAAAACTCAATCAGGAGAACACACAAAG
TGTTATCTACACTGTTTTTACCTCCTTGTATGGCAACTGTATTATGCAAGAAGATGAAAGCTAC
CTCCTTCAGGTTTTACGATACTTGATTGAATTCGAACTTAAAGAAAGTGACAACCCCAGGCGCC
TTTTGAGGAGAGGAACCTGTGCCTTCAGCATCTTATTTAAACTTTTTTCTGAAGGACTGTTTTC
TGCCAAACTTTTCCTTACGGCTACTTTACATGAGCCAATCATGCAGCTCCTTGTAGAAGATGAG
GACCACCTGGAGACAGATCCAAACAAGCTAATCGAGAGGTTCTCTCCAGCCCAGCAGGAAAAAC
TCTTTGGAGAGAAAGGCTCAGATAGATTTAGGCAAAAGGTTCAAGAAATGGTAGATTCCAATGA
GGCTAAACTAGTGGCTTTGGTGAACAAATTTATTGGTTACCTTAAGCAAAATACGTACTGCTTT
CCACATAGTTTGAGGTGGATTGTATCACAGATGTACAAAACTCTTTCTTGTGTAGACAGATTGG
AGGTTGGGGAGGTCAGAGCAATGTGTACGGATCTTCTGTTGGCTTGCTTCATTTGTCCCGCAGT
TGTCAATCCAGAACAGTATGGAATAATATCTGATGCTCCTATTAATGAGGTGGCAAGATTTAAC
CTGATGCAGGTTGGCCGCCTTTTGCAGCAGTTAGCAATGACTGGCACTGAGGAAGGAGATCCCC
GGACCAAAAATAGCCTTGGGAAATTTGACAAAGGCTGTGTCGCTGCTTTCCTTGATGTCGTAAT
CGGAGGCCGTGCAGTAGAGACTCCACCAATGTCCTCTGTTAATCTTCTGGAAGGCTTGAGCAGA
ACTGTGGTGTATATAAGCTACAGTCAGCTTATTACTCTGGTAAATTTTATGAAGAGTGTGATGT
CTGGAGATCAACTGAAAGAAGATAGAATGGCTCTTGACAATTTGTTGGCAAACTTGCCCCAGGC
TAAGCCCGGGAAGAGCAGCAGTCTAGACATGACTCCCTACAGCACTCCTCAGATGTCTCCAGCA
ACCACTCCAGCCAATAAAAAGAATCGGCTACCTATAGGACAACAGTTAGCAGCCATCACTGCCT
GGGATTCTTCAGCCACCAATCTTACCGCTCACATTCCTCTAGTAACCCCGTTTGCAACTCGGAG
CCGAAGCCGAAGTAATATGCTAATGGACCTACATATGGATCATGAAGGGTCATCTCAAGAAACC
ATCCAGGAGGTGCAGCCAGAAGAGGTGCTGGTCATTTCCTTAGGGACAGGTCCTCAGCTCACTC
CAGGGATGATGTCAGAAAATGAGGTTCTAAACATGCAGCTTTCGGACGGAGGACAAGGAGATGT
CCCTGTTGATGAAAACAAACTCCACGGTAAACCTGATAAAACCTTGCGCTTTTCCCTGTGCAGT
GATAATCTGGAAGGCATATCTGAAGGTCCTTCCAATCGCTCTAATTCAGTGTCTTCTCTCGACC
TGGAAGGAGAGTCTGTATCTGAACTTGGGGCAGGACCTTCTGGGAGTAATGGAGTTGAAGCACT
GCAACTGTTAGAACACGAGCAAGCTACAACACAAGATAATCTTGATGATAAACTGAGGAAGTTT
GAGATTCGGGATATGATGGGACTAACAGATGACAGGGACATATCCGAGACAGTGAGTGAGACCT
GGAGCACCGATGTCCTAGGAAGTGACTTCGACCCAAACGTTGATGAAGACCGTTTGCAGGAGAT
TGCAGGTGCAGCAGCAGAGAATGTGCTGGGCAGCTTGCTGTGCCTTCCAGGTTCCGGCTCAGTT
CTCCTTGACCCTTGCACTGGCTCGACCATATCAGAGACCACAAGTGAAGCTTGGAGTGTAGAGG
TGTTGCCCAGTGACTCAGAGGCTCCAGACTTAAAGCAGGAAGAGCGCCTCCAAGAGCTGGAGAG
CTGTTCTGGACTGGGCAGTACATCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCCCAGC
ACACCAGGCCTCAGTGTTGTGTCCGGCATAAGCGCTACATCGGAGGATATTCCCAATAAGATCG
AAGACCTGCGATCTGAGTGCAGCTCTGATTTTGGGGGTAAAGATTCTGTAACTAGTCCAGATGT
GGATGACATAGCCCATGGCGCCCACCAGCTGACCTCTCCTCCCTCTCAGTCAGAGTCTCTGCTT
GCCATGTTTGACCCACTGTCTTCACATGAAGGGGCCTCTGCTGTGGTAAGGCCGAAGGTTCACT
ATGCCCGGCCCTCGCATCCACCTCCAGATCCTCCAATCCTGGAAGGTGCAGTGGGAGGAAATGA
AGCCAGGCTGCCCAACTTCGGTTCTCACGTTTTAACTGCAGCTGAAATGGAGGCGTTCAGGCAG
AGGCACTCTTACCCTGAGAGACTAGTGCGCAGCAGAAGCTCTGATATAGTGTCTTGTGTGCGGC
GGCCCATGAGTGACCCCAGCTGGAACCGACGTCCAGGGAATGAAGAACTTCCACCAGCTGCAGC
CACTGGTGCTACTTCTTTGGTGGCTGCACCTCACTCGTCATCTTCGTCCCCGAGTAAGGACTCT
TCAAGAGGAGAGACTGAGGAGCGCAAGGACAGTGACGATGAGAGGTCAGACAGGAGCAGGCCTT
GGTGGAGAAAGCGTTTTGTATCAGCTATGCCTAAAGACGAGCCCAGCCCTAGGCTCAGTGCACA
AGCTCAGGTTGCGGAAGACATTCTGGACAAATACCGAAATGCCATTAAACGGACCAGCCCCAGT
GAAGGAGCACTGGCAAATGATGAGAGTACAGAGGTCATGGGTGATGGTGAAAGTGCTCACGATT
CTCCTCGTGAGGAGCTGCAGAACATGTCAGCTGACGACCTCCCAGACTCTGCGAGCCAAGCAGC
TCACCCTCAGGACTCTGCCCTCTCTTACAGAGATGTGAAAAAGAAGCTGAGGCTCGCACTTTGC
TCTGCAGACTCTGTGGCCTTCCCCATGCTGACTCATTCAACAAGGAACGGACTGCCAGAGCACA
CAGACCCGGAAGATAATGAAATTGTGTGCTTCTTAAAAGTTCAAATAGCTGAAGCAATTAACTT
ACAAGATAAGAGCTTAATGGCTCAGCTTCAAGAAACAATGCGCTGTGTCTGCCGCTTTGACAAT
AGGACTTGTAGGAAGTTGCTGGCATCCATTGCTGAAGACTACAGAAAAAGAGCTCCGTATATTG
CGTATCTCACCCGCTGTCGGCAAGGACTGCAGACCACACAGGCTCACCTCGAAAGACTCTTGCA
AAGAGTTTTGCGGGACAAAGAGGTGGCCAATCGGTATTTTACCACCGTCTGTGTGCGGTTACTG
CTTGAGAGCAAAGAAAAGAAGATCAGGGAGTTCATTCAAGACTTTCAGAAACTTACGGCTGCTG
ATGATAAGACGGCTCAAGTGGAGGATTTCCTACAGTTCCTGTATGGTGCGATGGCGCAGGATGT
CATATGGCAGAATGCCAGCGAGGAGCAGCTGCAGGATGCCCAGCTGGCCATCGAGCGGAGCGTG
ATGAATCGGATCTTCAAGCTTGCTTTCTACCCTAACCAGGATGGGGACATACTGCGTGACCAGG
TTCTGCATGAACACATCCAGAGATTATCTAAAGTAGTGACTGCAAACCACAGAGCTCTGCAGAT
CCCAGAGGTCTATCTTCGTGAGGCACCGTGGCCATCTGCACAGTCAGAAATCAGGACTATTAGT
GCTTACAAGACGCCCCGGGACAAAGTGCAGTGCATCCTGAGAATGTGCTCCACTATCATGAACC
TCCTGAGTCTGGCCAATGAGGACTCTGTCCCCGGGGCAGATGACTTTGTCCCCGTGTTGGTGTT
TGTGTTGATAAAGGCAAACCCACCCTGCCTGCTGTCCACCGTGCAGTACATCAGCAGCTTCTAT
GCCAGCTGTCTGTCTGGAGAGGAGTCCTACTGGTGGATGCAGTTCACTGCGGCCGTGGAGTTTA
TTAAAACCATCGATGACAGAAAGTGACCAAGACCAGGCCCACCAAGGCAGCAGACTGTAGCCAG
GAAACAGATCTCTAAGAGTGTGTAGCAGCTTCCTTGAAAGCTGAACACCGTTTTGTCTAAGGCT
GTACAGATGTCTCCTCACGGCTCTTCCTAGCAGACTAACAAGCTAACAGCAGGTCCTCGCTCCT
CTCGGCCTTTCTGAGTTGCCTATTTTATTTCCTGTCCCCACGTAGAGTAGTACTACAAAAGGGA
CCATGTTTTTCAGGTGTTTTAAATTTTTAAAAACCACAACAGAATCTTTTAGGGAACATCTAGA
TCTCGGTTCATGAGTTCCCTGTCCGTCGCTTTCATTTCTGGAAAGAACAGTGTGCCTCTTCCAA
GTCTCTGTGTGAGCGTGCTCGCTCAGGAGGCCACCTGCACTGAGGGTCTCGGAGATACAGTCTC
CTAAGGAAGAGCTGAGAAGGACATGTAGATGTAATATATATTTATATTTGATGTGATATGACAT
CTTCAGACTCTAATAAACAAGAGCAGCTGCTGAGAGTAGCGTGACATTCCCTCTGTGACATGGC
TTCCTTGACAAAACTTAAGCTGAGCTCAAAAGCAAAAGCAGAGCTATTTATTAGTGTGGACACA
GTTTATCACTCTCCATGTGTGCAGTTTGATGGGGAAGTCATGTAGGTGTGGGCCACCATGGTAT
ATGTTGAGCCTGCACACTGGGGCAGGCTCCACCATGCATTGCCCAGGGCGAGCAGTGCGTGGCA
GGGTGCACGTGCGTCCTTCCTTCACACCTGCTCACCGAGCCTCAGCCGTCCTCCGTCTCTGAGG
ATGGTTCACATCGAGTGCACAGACCAGGAATTCAGTGAATGTCATTTTTTAAAACTCATTTGTA
TCGTCTGCTCTACTGATCCAGGTTTTACTAGTGTTAAGCGATTTTGATCAGCCACACTATTCTA
TGGGAAATCTATTTTGGCGGTTTCTGTGCCTTTATTGCCCTCTTCTGGAAAAAAAAAACAAAAA
ACAAAAAAAATCGTGTCTGTGGTTTGGTCTGCGCTGTACATCAGTAATTAATCAGGCATGGGCG
TTGGTGCCTGAGCGGCTGCCCAGGGAGGCACACCAGAGCTTCAAGCACAAGTCCTGTACATAGG
CCATCGCCCATGGTTTCACCTTGTATGTTTCCTAAACCTGTTTAGCTTTTTTGACAAATGCTGC
AATCTCATACTTCCGAGGCCCTTGTGGCAGCAATACAGGCATCTTCTAAGGGGCCCGTGGCAGC
CAGCCGTGAGCAGACGGGTAGAGGCCGTGTGCTCCCGCTCTGAGTACTGGGCCACACTGTGCCA
AAAGAAGCTGGGCTTTCTCATGCTCCCCTCTCCTTCCCTTTCATCCCCAAGACGGGTTTGCACA
GGCCTGGGAGATGTGCTTTCTGCCTGTTAGGGAGAGATCAGAACTAAACTGGCATCACAGACAC
CCGTTCAGATGTTGGTCAGGAAATCTGTGTACTTCATGGGCTGTCGTCCACCTTGCCTTGGGGT
TAGAAGTCACTTCCCTTCCTTAGTACATTGCAAGCCAAACTGTGACTCGGTTCTGCAGCTAGAA
GGGAGTCTGACATCTACGTCAGCGCTGATTCAATAAATGTTAAGTCAACAGAAGATTTCGAATA
GTTGGAATTAATTCATTGTTATGGGACTTAACTTGTAAATCAATGAGAGATTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTGTAATGGTAGCTAAATATATTCCATGTTATCACTGTGGA
AATAAATATGAAGATGTGGACATTG

hide sequence

RefSeq Acc Id:

XM_008761795 ⟹ XP_008760017

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	38,365,859 - 38,439,403 (-)	NCBI
mRatBN7.2	3	17,970,131 - 18,041,888 (-)	NCBI
Rnor_6.0	3	13,751,572 - 13,825,571 (-)	NCBI

Sequence:

show sequence

ATTCTCCTCGCTTTCAGGCAGCATGACTACTAGCAAGGGCAGGAAAGACAAGGGAAGCATTTCA
GCTCTGCAGGAGGCGAACTTTCTAACATTTAGAGCTGTCCAACAGAGAGGAGCAGGCTGCACTT
CTTAGGGGTAGTGAGCTGACTGATACAGGAACATCCAAAACAGAAGTGAGACGGGAGGCGGTCT
GGCTCAACCTGCAGGAGGATATTCCTGCCTGACTGGGAGCTGCACGGATGACCTTTAAGCACCA
GGTACATGGAAACGTGAGGGCGGGGGATCGGCGGACAGGTCCCAGCAAGGCGGTTCGCGACCGG
GAGCGGAAGGGCGGCCGCAGTCCGGACCACCGATCCCAGGGGCCCCCGCGGCGACGCGCACGCG
CACTGGTGAGGGGGCAGCGCCGCCGCAGGAGGCAGAGAAACCGACTGGCGATCTGTGGCGGCGG
CTGGGCGGCGGTGGCAGTTCGCAGCGAGGGCGACGGCTCCGAGGCTGAGTGGCCGTCCGGCGAG
GACCAGGGCGCCGTCCTCCGCATGACCTCACCGTGATCAACCTTTGTACCTTTTCCGAATTCAA
AGATGGTGAAGCTAGATATTCACACATTGGCCCACCACCTCAAGCAGGAGCGCTTATATGTGAG
CTCTGAGAAACAGCTCATTCAGAGGCTAAATGCAGATGTGCTGAAGACAGCCGAGAAGCTGTAT
CGGACAGCGTGGATTGCAAAGCAGCAGAGGATTAATTTGGATCGTCTCATTATAACCAGCGCTG
AAGCTTCCCCTGCTGAGTGTTGCCAGCATGCTAAGATTTTGGAAGACACACAGTTTGTTGATGG
ATATAAGCAACTGGGATTTCAGGAAACAGCCTATGGAGAATTCCTGAGTCGGTTAAGAGAGAAT
CCGCGTCTTATTGCCTCCTCTTTGGTTGCTGGAGAAAAACTCAATCAGGAGAACACACAAAGTG
TTATCTACACTGTTTTTACCTCCTTGTATGGCAACTGTATTATGCAAGAAGATGAAAGCTACCT
CCTTCAGGTTTTACGATACTTGATTGAATTCGAACTTAAAGAAAGTGACAACCCCAGGCGCCTT
TTGAGGAGAGGAACCTGTGCCTTCAGCATCTTATTTAAACTTTTTTCTGAAGGACTGTTTTCTG
CCAAACTTTTCCTTACGGCTACTTTACATGAGCCAATCATGCAGCTCCTTGTAGAAGATGAGGA
CCACCTGGAGACAGATCCAAACAAGCTAATCGAGAGGTTCTCTCCAGCCCAGCAGGAAAAACTC
TTTGGAGAGAAAGGCTCAGATAGATTTAGGCAAAAGGTTCAAGAAATGGTAGATTCCAATGAGG
CTAAACTAGTGGCTTTGGTGAACAAATTTATTGGTTACCTTAAGCAAAATACGTACTGCTTTCC
ACATAGTTTGAGGTGGATTGTATCACAGATGTACAAAACTCTTTCTTGTGTAGACAGATTGGAG
GTTGGGGAGGTCAGAGCAATGTGTACGGATCTTCTGTTGGCTTGCTTCATTTGTCCCGCAGTTG
TCAATCCAGAACAGTATGGAATAATATCTGATGCTCCTATTAATGAGGTGGCAAGATTTAACCT
GATGCAGGTTGGCCGCCTTTTGCAGCAGTTAGCAATGACTGGCACTGAGGAAGGAGATCCCCGG
ACCAAAAATAGCCTTGGGAAATTTGACAAAGGCTGTGTCGCTGCTTTCCTTGATGTCGTAATCG
GAGGCCGTGCAGTAGAGACTCCACCAATGTCCTCTGTTAATCTTCTGGAAGGCTTGAGCAGAAC
TGTGGTGTATATAAGCTACAGTCAGCTTATTACTCTGGTAAATTTTATGAAGAGTGTGATGTCT
GGAGATCAACTGAAAGAAGATAGAATGGCTCTTGACAATTTGTTGGCAAACTTGCCCCAGGCTA
AGCCCGGGAAGAGCAGCAGTCTAGACATGACTCCCTACAGCACTCCTCAGATGTCTCCAGCAAC
CACTCCAGCCAATAAAAAGAATCGGCTACCTATAGCAACTCGGAGCCGAAGCCGAAGTAATATG
CTAATGGACCTACATATGGATCATGAAGGGTCATCTCAAGAAACCATCCAGGAGGTGCAGCCAG
AAGAGGTGCTGGTCATTTCCTTAGGGACAGGTCCTCAGCTCACTCCAGGGATGATGTCAGAAAA
TGAGGTTCTAAACATGCAGCTTTCGGACGGAGGACAAGGAGATGTCCCTGTTGATGAAAACAAA
CTCCACGGTCCTTCCAATCGCTCTAATTCAGTGTCTTCTCTCGACCTGGAAGGAGAGTCTGTAT
CTGAACTTGGGGCAGGACCTTCTGGGAGTAATGGAGTTGAAGCACTGCAACTGTTAGAACACGA
GCAAGCTACAACACAAGATAATCTTGATGATAAACTGAGGAAGTTTGAGATTCGGGATATGATG
GGACTAACAGATGACAGGGACATATCCGAGACAGTGAGTGAGACCTGGAGCACCGATGTCCTAG
GAAGTGACTTCGACCCAAACGTTGATGAAGACCGTTTGCAGGAGATTGCAGGTGCAGCAGCAGA
GAATGTGCTGGGCAGCTTGCTGTGCCTTCCAGGTTCCGGCTCAGTTCTCCTTGACCCTTGCACT
GGCTCGACCATATCAGAGACCACAAGTGAAGCTTGGAGTGTAGAGGTGTTGCCCAGTGACTCAG
AGGCTCCAGACTTAAAGCAGGAAGAGCGCCTCCAAGAGCTGGAGAGCTGTTCTGGACTGGGCAG
TACATCTGATGATACGGATGTCAGGGAGGTCAGTTCCCGCCCCAGCACACCAGGCCTCAGTGTT
GTGTCCGGCATAAGCGCTACATCGGAGGATATTCCCAATAAGATCGAAGACCTGCGATCTGAGT
GCAGCTCTGATTTTGGGGGTAAAGATTCTGTAACTAGTCCAGATGTGGATGACATAGCCCATGG
CGCCCACCAGCTGACCTCTCCTCCCTCTCAGTCAGAGTCTCTGCTTGCCATGTTTGACCCACTG
TCTTCACATGAAGGGGCCTCTGCTGTGGTAAGGCCGAAGGTTCACTATGCCCGGCCCTCGCATC
CACCTCCAGATCCTCCAATCCTGGAAGGTGCAGTGGGAGGAAATGAAGCCAGGCTGCCCAACTT
CGGTTCTCACGTTTTAACTGCAGCTGAAATGGAGGCGTTCAGGCAGAGGCACTCTTACCCTGAG
AGACTAGTGCGCAGCAGAAGCTCTGATATAGTGTCTTGTGTGCGGCGGCCCATGAGTGACCCCA
GCTGGAACCGACGTCCAGGGAATGAAGAACTTCCACCAGCTGCAGCCACTGGTGCTACTTCTTT
GGTGGCTGCACCTCACTCGTCATCTTCGTCCCCGAGTAAGGACTCTTCAAGAGGAGAGACTGAG
GAGCGCAAGGACAGTGACGATGAGAGGTCAGACAGGAGCAGGCCTTGGTGGAGAAAGCGTTTTG
TATCAGCTATGCCTAAAGCTCCTATACCATTTAGAAAGAAAGAAAAACAAGAAAAAGACAAAGA
TGATCTGGGGCCTGACAGATTCTCAACACTCACAGACGAGCCCAGCCCTAGGCTCAGTGCACAA
GCTCAGGTTGCGGAAGACATTCTGGACAAATACCGAAATGCCATTAAACGGACCAGCCCCAGTG
AAGGAGCACTGGCAAATGATGAGAGTACAGAGGTCATGGGTGATGGTGAAAGTGCTCACGATTC
TCCTCGTGAGGAGCTGCAGAACATGTCAGCTGACGACCTCCCAGACTCTGCGAGCCAAGCAGCT
CACCCTCAGGACTCTGCCCTCTCTTACAGAGATGTGAAAAAGAAGCTGAGGCTCGCACTTTGCT
CTGCAGACTCTGTGGCCTTCCCCATGCTGACTCATTCAACAAGGAACGGACTGCCAGAGCACAC
AGACCCGGAAGATAATGAAATTGTGTGCTTCTTAAAAGTTCAAATAGCTGAAGCAATTAACTTA
CAAGATAAGAGCTTAATGGCTCAGCTTCAAGAAACAATGCGCTGTGTCTGCCGCTTTGACAATA
GGACTTGTAGGAAGTTGCTGGCATCCATTGCTGAAGACTACAGAAAAAGAGCTCCGTATATTGC
GTATCTCACCCGCTGTCGGCAAGGACTGCAGACCACACAGGCTCACCTCGAAAGACTCTTGCAA
AGAGTTTTGCGGGACAAAGAGGTGGCCAATCGGTATTTTACCACCGTCTGTGTGCGGTTACTGC
TTGAGAGCAAAGAAAAGAAGATCAGGGAGTTCATTCAAGACTTTCAGAAACTTACGGCTGCTGA
TGATAAGACGGCTCAAGTGGAGGATTTCCTACAGTTCCTGTATGGTGCGATGGCGCAGGATGTC
ATATGGCAGAATGCCAGCGAGGAGCAGCTGCAGGATGCCCAGCTGGCCATCGAGCGGAGCGTGA
TGAATCGGATCTTCAAGCTTGCTTTCTACCCTAACCAGGATGGGGACATACTGCGTGACCAGGT
TCTGCATGAACACATCCAGAGATTATCTAAAGTAGTGACTGCAAACCACAGAGCTCTGCAGATC
CCAGAGGTCTATCTTCGTGAGGCACCGTGGCCATCTGCACAGTCAGAAATCAGGACTATTAGTG
CTTACAAGACGCCCCGGGACAAAGTGCAGTGCATCCTGAGAATGTGCTCCACTATCATGAACCT
CCTGAGTCTGGCCAATGAGGACTCTGTCCCCGGGGCAGATGACTTTGTCCCCGTGTTGGTGTTT
GTGTTGATAAAGGCAAACCCACCCTGCCTGCTGTCCACCGTGCAGTACATCAGCAGCTTCTATG
CCAGCTGTCTGTCTGGAGAGGAGTCCTACTGGTGGATGCAGTTCACTGCGGCCGTGGAGTTTAT
TAAAACCATCGATGACAGAAAGTGACCAAGACCAGGCCCACCAAGGCAGCAGACTGTAGCCAGG
AAACAGATCTCTAAGAGTGTGTAGCAGCTTCCTTGAAAGCTGAACACCGTTTTGTCTAAGGCTG
TACAGATGTCTCCTCACGGCTCTTCCTAGCAGACTAACAAGCTAACAGCAGGTCCTCGCTCCTC
TCGGCCTTTCTGAGTTGCCTATTTTATTTCCTGTCCCCACGTAGAGTAGTACTACAAAAGGGAC
CATGTTTTTCAGGTGTTTTAAATTTTTAAAAACCACAACAGAATCTTTTAGGGAACATCTAGAT
CTCGGTTCATGAGTTCCCTGTCCGTCGCTTTCATTTCTGGAAAGAACAGTGTGCCTCTTCCAAG
TCTCTGTGTGAGCGTGCTCGCTCAGGAGGCCACCTGCACTGAGGGTCTCGGAGATACAGTCTCC
TAAGGAAGAGCTGAGAAGGACATGTAGATGTAATATATATTTATATTTGATGTGATATGACATC
TTCAGACTCTAATAAACAAGAGCAGCTGCTGAGAGTAGCGTGACATTCCCTCTGTGACATGGCT
TCCTTGACAAAACTTAAGCTGAGCTCAAAAGCAAAAGCAGAGCTATTTATTAGTGTGGACACAG
TTTATCACTCTCCATGTGTGCAGTTTGATGGGGAAGTCATGTAGGTGTGGGCCACCATGGTATA
TGTTGAGCCTGCACACTGGGGCAGGCTCCACCATGCATTGCCCAGGGCGAGCAGTGCGTGGCAG
GGTGCACGTGCGTCCTTCCTTCACACCTGCTCACCGAGCCTCAGCCGTCCTCCGTCTCTGAGGA
TGGTTCACATCGAGTGCACAGACCAGGAATTCAGTGAATGTCATTTTTTAAAACTCATTTGTAT
CGTCTGCTCTACTGATCCAGGTTTTACTAGTGTTAAGCGATTTTGATCAGCCACACTATTCTAT
GGGAAATCTATTTTGGCGGTTTCTGTGCCTTTATTGCCCTCTTCTGGAAAAAAAAAACAAAAAA
CAAAAAAAATCGTGTCTGTGGTTTGGTCTGCGCTGTACATCAGTAATTAATCAGGCATGGGCGT
TGGTGCCTGAGCGGCTGCCCAGGGAGGCACACCAGAGCTTCAAGCACAAGTCCTGTACATAGGC
CATCGCCCATGGTTTCACCTTGTATGTTTCCTAAACCTGTTTAGCTTTTTTGACAAATGCTGCA
ATCTCATACTTCCGAGGCCCTTGTGGCAGCAATACAGGCATCTTCTAAGGGGCCCGTGGCAGCC
AGCCGTGAGCAGACGGGTAGAGGCCGTGTGCTCCCGCTCTGAGTACTGGGCCACACTGTGCCAA
AAGAAGCTGGGCTTTCTCATGCTCCCCTCTCCTTCCCTTTCATCCCCAAGACGGGTTTGCACAG
GCCTGGGAGATGTGCTTTCTGCCTGTTAGGGAGAGATCAGAACTAAACTGGCATCACAGACACC
CGTTCAGATGTTGGTCAGGAAATCTGTGTACTTCATGGGCTGTCGTCCACCTTGCCTTGGGGTT
AGAAGTCACTTCCCTTCCTTAGTACATTGCAAGCCAAACTGTGACTCGGTTCTGCAGCTAGAAG
GGAGTCTGACATCTACGTCAGCGCTGATTCAATAAATGTTAAGTCAACAGAAGATTTCGAATAG
TTGGAATTAATTCATTGTTATGGGACTTAACTTGTAAATCAATGAGAGATTTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTGTAATGGTAGCTAAATATATTCCATGTTATCACTGTGGAA
ATAAATATGAAGATGTGGACATTG

hide sequence

RefSeq Acc Id:

XM_039106216 ⟹ XP_038962144

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	38,391,914 - 38,439,403 (-)	NCBI
mRatBN7.2	3	17,994,404 - 18,041,888 (-)	NCBI

RefSeq Acc Id:

XM_063283968 ⟹ XP_063140038

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	38,365,859 - 38,439,403 (-)	NCBI

RefSeq Acc Id:

XM_063283969 ⟹ XP_063140039

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	38,365,859 - 38,439,403 (-)	NCBI

RefSeq Acc Id:

XR_010064646

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	38,377,167 - 38,439,403 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414612	(Get FASTA)	NCBI Sequence Viewer
	XP_006234089	(Get FASTA)	NCBI Sequence Viewer
	XP_008760014	(Get FASTA)	NCBI Sequence Viewer
	XP_008760016	(Get FASTA)	NCBI Sequence Viewer
	XP_008760017	(Get FASTA)	NCBI Sequence Viewer
	XP_038962144	(Get FASTA)	NCBI Sequence Viewer
	XP_063140038	(Get FASTA)	NCBI Sequence Viewer
	XP_063140039	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93172	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063504
	ENSRNOP00000063504.5
	ENSRNOP00000077706
	ENSRNOP00000077706.2
	ENSRNOP00000082105
	ENSRNOP00000082105.1

RefSeq Acc Id:	XP_006234089 ⟸ XM_006234027
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZT12 (UniProtKB/TrEMBL), A6JUC5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKLDIHTLAHHLKQERLYVSSEKQLIQRLNADVLKTAEKLYRTAWIAKQQRINLDRLIITSAE ASPAECCQHAKILEDTQFVDGYKQLGFQETAYGEFLSRLRENPRLIASSLVAGEKLNQENTQSV IYTVFTSLYGNCIMQEDESYLLQVLRYLIEFELKESDNPRRLLRRGTCAFSILFKLFSEGLFSA KLFLTATLHEPIMQLLVEDEDHLETDPNKLIERFSPAQQEKLFGEKGSDRFRQKVQEMVDSNEA KLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVDRLEVGEVRAMCTDLLLACFICPAVV NPEQYGIISDAPINEVARFNLMQVGRLLQQLAMTGTEEGDPRTKNSLGKFDKGCVAAFLDVVIG GRAVETPPMSSVNLLEGLSRTVVYISYSQLITLVNFMKSVMSGDQLKEDRMALDNLLANLPQAK PGKSSSLDMTPYSTPQMSPATTPANKKNRLPIGQQLAAITAWDSSATNLTAHIPLVTPFATRSR SRSNMLMDLHMDHEGSSQETIQEVQPEEVLVISLGTGPQLTPGMMSENEVLNMQLSDGGQGDVP VDENKLHGKPDKTLRFSLCSDNLEGISEGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQ LLEHEQATTQDNLDDKLRKFEIRDMMGLTDDRDISETVSETWSTDVLGSDFDPNVDEDRLQEIA GAAAENVLGSLLCLPGSGSVLLDPCTGSTISETTSEAWSVEVLPSDSEAPDLKQEERLQELESC SGLGSTSDDTDVREVSSRPSTPGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDVD DIAHGAHQLTSPPSQSESLLAMFDPLSSHEGASAVVRPKVHYARPSHPPPDPPILEGAVGGNEA RLPNFGSHVLTAAEMEAFRQRHSYPERLVRSRSSDIVSCVRRPMSDPSWNRRPGNEELPPAAAT GATSLVAAPHSSSSSPSKDSSRGETEERKDSDDERSDRSRPWWRKRFVSAMPKAPIPFRKKEKQ EKDKDDLGPDRFSTLTDEPSPRLSAQAQVAEDILDKYRNAIKRTSPSEGALANDESTEVMGDGE SAHDSPREELQNMSADDLPDSASQAAHPQDSALSYRDVKKKLRLALCSADSVAFPMLTHSTRNG LPEHTDPEDNEIVCFLKVQIAEAINLQDKSLMAQLQETMRCVCRFDNRTCRKLLASIAEDYRKR APYIAYLTRCRQGLQTTQAHLERLLQRVLRDKEVANRYFTTVCVRLLLESKEKKIREFIQDFQK LTAADDKTAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDI LRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCS TIMNLLSLANEDSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTA AVEFIKTIDDRK hide sequence

RefSeq Acc Id:	XP_008760017 ⟸ XM_008761795
- Peptide Label:	isoform X4
- UniProtKB:	D4A022 (UniProtKB/TrEMBL), A6JUC5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKLDIHTLAHHLKQERLYVSSEKQLIQRLNADVLKTAEKLYRTAWIAKQQRINLDRLIITSAE ASPAECCQHAKILEDTQFVDGYKQLGFQETAYGEFLSRLRENPRLIASSLVAGEKLNQENTQSV IYTVFTSLYGNCIMQEDESYLLQVLRYLIEFELKESDNPRRLLRRGTCAFSILFKLFSEGLFSA KLFLTATLHEPIMQLLVEDEDHLETDPNKLIERFSPAQQEKLFGEKGSDRFRQKVQEMVDSNEA KLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVDRLEVGEVRAMCTDLLLACFICPAVV NPEQYGIISDAPINEVARFNLMQVGRLLQQLAMTGTEEGDPRTKNSLGKFDKGCVAAFLDVVIG GRAVETPPMSSVNLLEGLSRTVVYISYSQLITLVNFMKSVMSGDQLKEDRMALDNLLANLPQAK PGKSSSLDMTPYSTPQMSPATTPANKKNRLPIATRSRSRSNMLMDLHMDHEGSSQETIQEVQPE EVLVISLGTGPQLTPGMMSENEVLNMQLSDGGQGDVPVDENKLHGPSNRSNSVSSLDLEGESVS ELGAGPSGSNGVEALQLLEHEQATTQDNLDDKLRKFEIRDMMGLTDDRDISETVSETWSTDVLG SDFDPNVDEDRLQEIAGAAAENVLGSLLCLPGSGSVLLDPCTGSTISETTSEAWSVEVLPSDSE APDLKQEERLQELESCSGLGSTSDDTDVREVSSRPSTPGLSVVSGISATSEDIPNKIEDLRSEC SSDFGGKDSVTSPDVDDIAHGAHQLTSPPSQSESLLAMFDPLSSHEGASAVVRPKVHYARPSHP PPDPPILEGAVGGNEARLPNFGSHVLTAAEMEAFRQRHSYPERLVRSRSSDIVSCVRRPMSDPS WNRRPGNEELPPAAATGATSLVAAPHSSSSSPSKDSSRGETEERKDSDDERSDRSRPWWRKRFV SAMPKAPIPFRKKEKQEKDKDDLGPDRFSTLTDEPSPRLSAQAQVAEDILDKYRNAIKRTSPSE GALANDESTEVMGDGESAHDSPREELQNMSADDLPDSASQAAHPQDSALSYRDVKKKLRLALCS ADSVAFPMLTHSTRNGLPEHTDPEDNEIVCFLKVQIAEAINLQDKSLMAQLQETMRCVCRFDNR TCRKLLASIAEDYRKRAPYIAYLTRCRQGLQTTQAHLERLLQRVLRDKEVANRYFTTVCVRLLL ESKEKKIREFIQDFQKLTAADDKTAQVEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVM NRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEIRTISA YKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSFYA SCLSGEESYWWMQFTAAVEFIKTIDDRK hide sequence

RefSeq Acc Id:	XP_008760014 ⟸ XM_008761792
- Peptide Label:	isoform X2
- UniProtKB:	A6JUC5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKLDIHTLAHHLKQERLYVSSEKQLIQRLNADVLKTAEKLYRTAWIAKQQRINLDRLIITSAE ASPAECCQHAKILEDTQFVDGYKQLGFQETAYGEFLSRLRENPRLIASSLVAGEKLNQENTQSV IYTVFTSLYGNCIMQEDESYLLQVLRYLIEFELKESDNPRRLLRRGTCAFSILFKLFSEGLFSA KLFLTATLHEPIMQLLVEDEDHLETDPNKLIERFSPAQQEKLFGEKGSDRFRQKVQEMVDSNEA KLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVDRLEVGEVRAMCTDLLLACFICPAVV NPEQYGIISDAPINEVARFNLMQVGRLLQQLAMTGTEEGDPRTKNSLGKFDKGCVAAFLDVVIG GRAVETPPMSSVNLLEGLSRTVVYISYSQLITLVNFMKSVMSGDQLKEDRMALDNLLANLPQAK PGKSSSLDMTPYSTPQMSPATTPANKKNRLPIGQQLAAITAWDSSATNLTAHIPLVTPFATRSR SRSNMLMDLHMDHEGSSQETIQEVQPEEVLVISLGTGPQLTPGMMSENEVLNMQLSDGGQGDVP VDENKLHGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEQATTQDNLDDKLRKFE IRDMMGLTDDRDISETVSETWSTDVLGSDFDPNVDEDRLQEIAGAAAENVLGSLLCLPGSGSVL LDPCTGSTISETTSEAWSVEVLPSDSEAPDLKQEERLQELESCSGLGSTSDDTDVREVSSRPST PGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDVDDIAHGAHQLTSPPSQSESLLA MFDPLSSHEGASAVVRPKVHYARPSHPPPDPPILEGAVGGNEARLPNFGSHVLTAAEMEAFRQR HSYPERLVRSRSSDIVSCVRRPMSDPSWNRRPGNEELPPAAATGATSLVAAPHSSSSSPSKDSS RGETEERKDSDDERSDRSRPWWRKRFVSAMPKAPIPFRKKEKQEKDKDDLGPDRFSTLTDEPSP RLSAQAQVAEDILDKYRNAIKRTSPSEGALANDESTEVMGDGESAHDSPREELQNMSADDLPDS ASQAAHPQDSALSYRDVKKKLRLALCSADSVAFPMLTHSTRNGLPEHTDPEDNEIVCFLKVQIA EAINLQDKSLMAQLQETMRCVCRFDNRTCRKLLASIAEDYRKRAPYIAYLTRCRQGLQTTQAHL ERLLQRVLRDKEVANRYFTTVCVRLLLESKEKKIREFIQDFQKLTAADDKTAQVEDFLQFLYGA MAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANH RALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFV PVLVFVLIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTIDDRK hide sequence

RefSeq Acc Id:	XP_008760016 ⟸ XM_008761794
- Peptide Label:	isoform X3
- UniProtKB:	A6JUC5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKLDIHTLAHHLKQERLYVSSEKQLIQRLNADVLKTAEKLYRTAWIAKQQRINLDRLIITSAE ASPAECCQHAKILEDTQFVDGYKQLGFQETAYGEFLSRLRENPRLIASSLVAGEKLNQENTQSV IYTVFTSLYGNCIMQEDESYLLQVLRYLIEFELKESDNPRRLLRRGTCAFSILFKLFSEGLFSA KLFLTATLHEPIMQLLVEDEDHLETDPNKLIERFSPAQQEKLFGEKGSDRFRQKVQEMVDSNEA KLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVDRLEVGEVRAMCTDLLLACFICPAVV NPEQYGIISDAPINEVARFNLMQVGRLLQQLAMTGTEEGDPRTKNSLGKFDKGCVAAFLDVVIG GRAVETPPMSSVNLLEGLSRTVVYISYSQLITLVNFMKSVMSGDQLKEDRMALDNLLANLPQAK PGKSSSLDMTPYSTPQMSPATTPANKKNRLPIGQQLAAITAWDSSATNLTAHIPLVTPFATRSR SRSNMLMDLHMDHEGSSQETIQEVQPEEVLVISLGTGPQLTPGMMSENEVLNMQLSDGGQGDVP VDENKLHGKPDKTLRFSLCSDNLEGISEGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQ LLEHEQATTQDNLDDKLRKFEIRDMMGLTDDRDISETVSETWSTDVLGSDFDPNVDEDRLQEIA GAAAENVLGSLLCLPGSGSVLLDPCTGSTISETTSEAWSVEVLPSDSEAPDLKQEERLQELESC SGLGSTSDDTDVREVSSRPSTPGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDVD DIAHGAHQLTSPPSQSESLLAMFDPLSSHEGASAVVRPKVHYARPSHPPPDPPILEGAVGGNEA RLPNFGSHVLTAAEMEAFRQRHSYPERLVRSRSSDIVSCVRRPMSDPSWNRRPGNEELPPAAAT GATSLVAAPHSSSSSPSKDSSRGETEERKDSDDERSDRSRPWWRKRFVSAMPKDEPSPRLSAQA QVAEDILDKYRNAIKRTSPSEGALANDESTEVMGDGESAHDSPREELQNMSADDLPDSASQAAH PQDSALSYRDVKKKLRLALCSADSVAFPMLTHSTRNGLPEHTDPEDNEIVCFLKVQIAEAINLQ DKSLMAQLQETMRCVCRFDNRTCRKLLASIAEDYRKRAPYIAYLTRCRQGLQTTQAHLERLLQR VLRDKEVANRYFTTVCVRLLLESKEKKIREFIQDFQKLTAADDKTAQVEDFLQFLYGAMAQDVI WQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIP EVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFV LIKANPPCLLSTVQYISSFYASCLSGEESYWWMQFTAAVEFIKTIDDRK hide sequence

Ensembl Acc Id:

ENSRNOP00000063504 ⟸ ENSRNOT00000066961

RefSeq Acc Id:	XP_038962144 ⟸ XM_039106216
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000082105 ⟸ ENSRNOT00000096520

Ensembl Acc Id:

ENSRNOP00000077706 ⟸ ENSRNOT00000112773

RefSeq Acc Id:	NP_001414612 ⟸ NM_001427683
- UniProtKB:	A0A8I5Y674 (UniProtKB/TrEMBL), A6JUC5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140039 ⟸ XM_063283969
- Peptide Label:	isoform X6
- UniProtKB:	A6JUC5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140038 ⟸ XM_063283968
- Peptide Label:	isoform X5
- UniProtKB:	A6JUC5 (UniProtKB/TrEMBL)

Protein Domains

Ras-GAP VPS9

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A022-F1-model_v2	AlphaFold	D4A022	1-1484	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692013

Promoter ID:

EPDNEW_R2530

Type:

initiation region

Name:

Gapvd1_1

Description:

GTPase activating protein and VPS9 domains 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	13,824,867 - 13,824,927	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307479	AgrOrtholog
BioCyc Gene	G2FUF-50082	BioCyc
Ensembl Genes	ENSRNOG00000017925	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066961	ENTREZGENE
	ENSRNOT00000066961.6	UniProtKB/TrEMBL
	ENSRNOT00000096520	ENTREZGENE
	ENSRNOT00000096520.2	UniProtKB/TrEMBL
	ENSRNOT00000112773	ENTREZGENE
	ENSRNOT00000112773.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.246.120	UniProtKB/TrEMBL
	1.20.1050.80	UniProtKB/TrEMBL
	GTPase Activation - p120gap, domain 1	UniProtKB/TrEMBL
InterPro	DUF5601	UniProtKB/TrEMBL
	RasGAP	UniProtKB/TrEMBL
	Rho_GTPase_activation_prot	UniProtKB/TrEMBL
	VPS9	UniProtKB/TrEMBL
	Vps9-like	UniProtKB/TrEMBL
	VPS9_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:311880	UniProtKB/TrEMBL
NCBI Gene	311880	ENTREZGENE
PANTHER	GTPASE-ACTIVATING PROTEIN AND VPS9 DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR23101	UniProtKB/TrEMBL
Pfam	DUF5601	UniProtKB/TrEMBL
	RasGAP	UniProtKB/TrEMBL
	VPS9	UniProtKB/TrEMBL
PhenoGen	Gapvd1	PhenoGen
PROSITE	RAS_GTPASE_ACTIV_2	UniProtKB/TrEMBL
	VPS9	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017925	RatGTEx
SMART	VPS9	UniProtKB/TrEMBL
Superfamily-SCOP	Rho_GAP	UniProtKB/TrEMBL
	SSF109993	UniProtKB/TrEMBL
UniProt	A0A8I5Y674	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZT12	ENTREZGENE, UniProtKB/TrEMBL
	A6JUC5	ENTREZGENE, UniProtKB/TrEMBL
	D4A022	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Gapvd1	GTPase activating protein and VPS9 domains 1	Gapvd1_predicted	GTPase activating protein and VPS9 domains 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Gapvd1_predicted	GTPase activating protein and VPS9 domains 1 (predicted)	RGD1307479_predicted	similar to KIAA1521 protein (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1307479_predicted	similar to KIAA1521 protein (predicted)	LOC311880_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC311880_predicted	similar to KIAA1521 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar