Zbtb5 (zinc finger and BTB domain containing 5) - Rat Genome Database

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Gene: Zbtb5 (zinc finger and BTB domain containing 5) Rattus norvegicus
Analyze
Symbol: Zbtb5
Name: zinc finger and BTB domain containing 5
RGD ID: 1307367
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB5 (zinc finger and BTB domain containing 5); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC298084; zinc finger and BTB domain-containing protein 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,039,805 - 64,062,451 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl564,035,080 - 64,074,912 (-)EnsemblGRCr8
mRatBN7.2559,244,132 - 59,265,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl559,243,307 - 59,265,426 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx561,218,241 - 61,237,599 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,037,757 - 63,057,114 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,006,996 - 63,026,357 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0560,538,926 - 60,561,487 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl560,538,928 - 60,559,533 (-)Ensemblrn6Rnor6.0
Rnor_5.0565,047,758 - 65,070,382 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4561,546,503 - 61,565,890 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera557,812,696 - 57,832,058 (-)NCBICelera
RGSC_v3.1561,548,357 - 61,568,152 (-)NCBI
Cytogenetic Map5q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19491398  


Genomics

Comparative Map Data
Zbtb5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,039,805 - 64,062,451 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl564,035,080 - 64,074,912 (-)EnsemblGRCr8
mRatBN7.2559,244,132 - 59,265,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl559,243,307 - 59,265,426 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx561,218,241 - 61,237,599 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,037,757 - 63,057,114 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,006,996 - 63,026,357 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0560,538,926 - 60,561,487 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl560,538,928 - 60,559,533 (-)Ensemblrn6Rnor6.0
Rnor_5.0565,047,758 - 65,070,382 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4561,546,503 - 61,565,890 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera557,812,696 - 57,832,058 (-)NCBICelera
RGSC_v3.1561,548,357 - 61,568,152 (-)NCBI
Cytogenetic Map5q22NCBI
ZBTB5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38937,438,102 - 37,465,450 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl937,437,687 - 37,468,850 (-)Ensemblhg38GRCh38
GRCh37937,438,099 - 37,465,447 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36937,428,111 - 37,455,396 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34937,428,110 - 37,455,396NCBI
Celera937,371,332 - 37,398,639 (-)NCBICelera
Cytogenetic Map9p13.2NCBI
HuRef937,390,028 - 37,417,615 (-)NCBIHuRef
CHM1_1937,439,792 - 37,467,103 (-)NCBICHM1_1
T2T-CHM13v2.0937,461,795 - 37,489,145 (-)NCBIT2T-CHM13v2.0
Zbtb5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39444,991,242 - 45,012,412 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl444,991,242 - 45,012,412 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38444,991,242 - 45,012,412 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl444,991,242 - 45,012,412 (-)Ensemblmm10GRCm38
MGSCv37445,004,114 - 45,025,284 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36445,012,342 - 45,033,370 (-)NCBIMGSCv36mm8
Celera445,011,302 - 45,032,472 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map423.66NCBI
Zbtb5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541929,001,265 - 29,032,446 (+)Ensembl
ChiLan1.0NW_00495541929,000,070 - 29,032,446 (+)NCBIChiLan1.0ChiLan1.0
ZBTB5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21187,126,894 - 87,154,780 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1987,132,835 - 87,160,721 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0937,282,824 - 37,310,710 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1938,207,580 - 38,237,571 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl938,209,979 - 38,212,012 (-)EnsemblpanPan2panpan1.1
ZBTB5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11153,760,510 - 53,774,864 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1153,762,839 - 53,774,921 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1152,350,782 - 52,365,165 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01154,870,241 - 54,884,633 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1154,870,254 - 54,884,661 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11153,368,460 - 53,382,759 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01153,397,527 - 53,411,913 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01154,094,126 - 54,108,520 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zbtb5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947168,673,196 - 168,706,232 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365245,222,968 - 5,253,812 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365245,220,785 - 5,253,812 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,153,168 - 238,177,461 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11238,153,165 - 238,179,344 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZBTB5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11243,110,046 - 43,156,311 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1243,151,876 - 43,153,909 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603840,178,125 - 40,224,466 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249301,055,125 - 1,088,006 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249301,055,113 - 1,089,096 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Zbtb5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v111,500,973 - 1,521,212 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zbtb5
172 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:727
Count of miRNA genes:302
Interacting mature miRNAs:375
Transcripts:ENSRNOT00000017046
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat

Markers in Region
RH132197  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2559,244,203 - 59,244,414 (+)MAPPERmRatBN7.2
Rnor_6.0560,539,000 - 60,539,210NCBIRnor6.0
Rnor_5.0565,047,832 - 65,048,042UniSTSRnor5.0
RGSC_v3.4561,546,572 - 61,546,782UniSTSRGSC3.4
Celera557,812,765 - 57,812,975UniSTS
Cytogenetic Map5q22UniSTS
RH138114  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2559,264,192 - 59,264,323 (+)MAPPERmRatBN7.2
Rnor_6.0560,559,000 - 60,559,130NCBIRnor6.0
Rnor_5.0565,067,832 - 65,067,962UniSTSRnor5.0
RGSC_v3.4561,566,555 - 61,566,685UniSTSRGSC3.4
Celera557,832,723 - 57,832,853UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000017046   ⟹   ENSRNOP00000017047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl564,038,319 - 64,060,454 (-)Ensembl
mRatBN7.2 Ensembl559,243,307 - 59,264,820 (-)Ensembl
Rnor_6.0 Ensembl560,540,806 - 60,559,329 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092899   ⟹   ENSRNOP00000075930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl564,039,814 - 64,047,138 (-)Ensembl
mRatBN7.2 Ensembl559,244,138 - 59,265,426 (-)Ensembl
Rnor_6.0 Ensembl560,540,855 - 60,559,533 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl560,538,928 - 60,540,538 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093015   ⟹   ENSRNOP00000076034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl560,538,938 - 60,541,282 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130377   ⟹   ENSRNOP00000100105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl564,039,797 - 64,060,695 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000135058   ⟹   ENSRNOP00000098901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl564,038,244 - 64,062,394 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000137043   ⟹   ENSRNOP00000103135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl564,038,319 - 64,074,912 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000144971   ⟹   ENSRNOP00000100131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl564,035,080 - 64,060,695 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000148065   ⟹   ENSRNOP00000104376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl564,038,488 - 64,050,619 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000152342   ⟹   ENSRNOP00000111322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl564,035,146 - 64,060,695 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154932   ⟹   ENSRNOP00000101196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl564,039,138 - 64,061,548 (-)Ensembl
RefSeq Acc Id: NM_001106657   ⟹   NP_001100127
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,039,808 - 64,059,198 (-)NCBI
mRatBN7.2559,244,135 - 59,263,528 (-)NCBI
Rnor_6.0560,538,931 - 60,558,335 (-)NCBI
Rnor_5.0565,047,758 - 65,070,382 (-)NCBI
RGSC_v3.4561,546,503 - 61,565,890 (-)RGD
Celera557,812,696 - 57,832,058 (-)RGD
Sequence:
RefSeq Acc Id: XM_006238047   ⟹   XP_006238109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,039,805 - 64,058,577 (-)NCBI
mRatBN7.2559,244,132 - 59,254,992 (-)NCBI
Rnor_6.0560,538,926 - 60,548,631 (-)NCBI
Rnor_5.0565,047,758 - 65,070,382 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006238048   ⟹   XP_006238110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,039,805 - 64,062,451 (-)NCBI
mRatBN7.2559,244,132 - 59,265,461 (-)NCBI
Rnor_6.0560,538,926 - 60,561,487 (-)NCBI
Rnor_5.0565,047,758 - 65,070,382 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063287333   ⟹   XP_063143403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,039,805 - 64,060,354 (-)NCBI
RefSeq Acc Id: XM_063287334   ⟹   XP_063143404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,039,805 - 64,060,415 (-)NCBI
RefSeq Acc Id: XM_063287335   ⟹   XP_063143405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,039,805 - 64,062,451 (-)NCBI
RefSeq Acc Id: NP_001100127   ⟸   NM_001106657
- UniProtKB: D3ZFS3 (UniProtKB/TrEMBL),   A6IJ82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238110   ⟸   XM_006238048
- Peptide Label: isoform X1
- UniProtKB: D3ZFS3 (UniProtKB/TrEMBL),   A6IJ82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238109   ⟸   XM_006238047
- Peptide Label: isoform X1
- UniProtKB: D3ZFS3 (UniProtKB/TrEMBL),   A6IJ82 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075930   ⟸   ENSRNOT00000092899
Ensembl Acc Id: ENSRNOP00000017047   ⟸   ENSRNOT00000017046
Ensembl Acc Id: ENSRNOP00000076034   ⟸   ENSRNOT00000093015
RefSeq Acc Id: XP_063143405   ⟸   XM_063287335
- Peptide Label: isoform X1
- UniProtKB: A6IJ82 (UniProtKB/TrEMBL),   D3ZFS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143404   ⟸   XM_063287334
- Peptide Label: isoform X1
- UniProtKB: A6IJ82 (UniProtKB/TrEMBL),   D3ZFS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143403   ⟸   XM_063287333
- Peptide Label: isoform X1
- UniProtKB: A6IJ82 (UniProtKB/TrEMBL),   D3ZFS3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111322   ⟸   ENSRNOT00000152342
Ensembl Acc Id: ENSRNOP00000103135   ⟸   ENSRNOT00000137043
Ensembl Acc Id: ENSRNOP00000101196   ⟸   ENSRNOT00000154932
Ensembl Acc Id: ENSRNOP00000098901   ⟸   ENSRNOT00000135058
Ensembl Acc Id: ENSRNOP00000104376   ⟸   ENSRNOT00000148065
Ensembl Acc Id: ENSRNOP00000100131   ⟸   ENSRNOT00000144971
Ensembl Acc Id: ENSRNOP00000100105   ⟸   ENSRNOT00000130377
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFS3-F1-model_v2 AlphaFold D3ZFS3 1-670 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307367 AgrOrtholog
BioCyc Gene G2FUF-41460 BioCyc
Ensembl Genes ENSRNOG00000012726 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017046.8 UniProtKB/TrEMBL
  ENSRNOT00000092899.3 UniProtKB/TrEMBL
  ENSRNOT00000130377.1 UniProtKB/TrEMBL
  ENSRNOT00000135058 ENTREZGENE
  ENSRNOT00000135058.1 UniProtKB/TrEMBL
  ENSRNOT00000137043.1 UniProtKB/TrEMBL
  ENSRNOT00000144971 ENTREZGENE
  ENSRNOT00000144971.1 UniProtKB/TrEMBL
  ENSRNOT00000148065 ENTREZGENE
  ENSRNOT00000148065.1 UniProtKB/TrEMBL
  ENSRNOT00000152342.1 UniProtKB/TrEMBL
  ENSRNOT00000154932.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  ZnFinger_BTB_dom_contain UniProtKB/TrEMBL
KEGG Report rno:298084 UniProtKB/TrEMBL
NCBI Gene 298084 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 37-LIKE UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
PhenoGen Zbtb5 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012726 RatGTEx
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A6IJ82 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFS3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Zbtb5  zinc finger and BTB domain containing 5   Zbtb5_predicted  zinc finger and BTB domain containing 5 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zbtb5_predicted  zinc finger and BTB domain containing 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED