Fbxo21 (F-box protein 21) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Fbxo21 (F-box protein 21) Rattus norvegicus
Analyze
Symbol: Fbxo21
Name: F-box protein 21
RGD ID: 1307346
Description: Predicted to enable DNA binding activity. Predicted to act upstream of or within several processes, including ERK1 and ERK2 cascade; hematopoietic stem cell differentiation; and hematopoietic stem cell homeostasis. Orthologous to human FBXO21 (F-box protein 21); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: F-box only protein 21; LOC360818
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81244,231,918 - 44,266,035 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1244,231,923 - 44,266,035 (-)EnsemblGRCr8
mRatBN7.21238,570,878 - 38,605,133 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1238,571,023 - 38,605,133 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1239,746,358 - 39,780,475 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01240,360,153 - 40,394,270 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01239,413,118 - 39,447,235 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01244,244,633 - 44,279,044 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1244,246,508 - 44,279,002 (-)Ensemblrn6Rnor6.0
Rnor_5.01246,075,020 - 46,109,147 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41239,719,654 - 39,753,892 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1240,229,218 - 40,263,586 (-)NCBICelera
RGSC_v3.11239,585,071 - 39,617,279 (-)NCBI
Cytogenetic Map12q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
Weight Gain  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (EXP,ISO)
amitrole  (EXP)
amphetamine  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
diethylstilbestrol  (EXP,ISO)
fenofibrate  (ISO)
flutamide  (EXP)
furan  (ISO)
gentamycin  (EXP)
inulin  (ISO)
ivermectin  (ISO)
ketoconazole  (ISO)
leflunomide  (EXP)
menadione  (ISO)
nefazodone  (EXP)
paracetamol  (ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rotenone  (EXP)
senecionine  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19028597   PMID:33450132  


Genomics

Comparative Map Data
Fbxo21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81244,231,918 - 44,266,035 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1244,231,923 - 44,266,035 (-)EnsemblGRCr8
mRatBN7.21238,570,878 - 38,605,133 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1238,571,023 - 38,605,133 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1239,746,358 - 39,780,475 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01240,360,153 - 40,394,270 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01239,413,118 - 39,447,235 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01244,244,633 - 44,279,044 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1244,246,508 - 44,279,002 (-)Ensemblrn6Rnor6.0
Rnor_5.01246,075,020 - 46,109,147 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41239,719,654 - 39,753,892 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1240,229,218 - 40,263,586 (-)NCBICelera
RGSC_v3.11239,585,071 - 39,617,279 (-)NCBI
Cytogenetic Map12q16NCBI
FBXO21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812117,141,991 - 117,190,470 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12117,141,991 - 117,190,504 (-)Ensemblhg38GRCh38
GRCh3712117,579,796 - 117,628,275 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612116,065,968 - 116,112,683 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3412116,044,305 - 116,091,020NCBI
Celera12117,211,091 - 117,257,810 (-)NCBICelera
Cytogenetic Map12q24.22NCBI
HuRef12114,590,452 - 114,637,170 (-)NCBIHuRef
CHM1_112117,549,459 - 117,596,178 (-)NCBICHM1_1
T2T-CHM13v2.012117,123,006 - 117,171,512 (-)NCBIT2T-CHM13v2.0
Fbxo21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395118,114,835 - 118,148,263 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5118,114,795 - 118,148,266 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385117,976,770 - 118,010,198 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5117,976,730 - 118,010,201 (+)Ensemblmm10GRCm38
MGSCv375118,426,779 - 118,460,200 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365118,237,800 - 118,271,221 (+)NCBIMGSCv36mm8
Celera5115,069,722 - 115,105,195 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map557.73NCBI
Fbxo21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545513,988,338 - 14,030,589 (+)Ensembl
ChiLan1.0NW_00495545513,989,149 - 14,028,309 (+)NCBIChiLan1.0ChiLan1.0
FBXO21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210125,204,573 - 125,252,420 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112125,200,955 - 125,248,454 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012114,718,678 - 114,766,573 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112118,095,827 - 118,142,658 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12118,095,827 - 118,142,658 (-)EnsemblpanPan2panpan1.1
FBXO21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12613,722,301 - 13,769,273 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2613,725,137 - 13,769,234 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2613,716,520 - 13,763,485 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02613,982,350 - 14,029,188 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2613,982,352 - 14,029,175 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12613,944,034 - 13,991,442 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02614,021,247 - 14,068,787 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02614,056,805 - 14,104,346 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fbxo21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118154,123,813 - 154,163,644 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365585,316,330 - 5,356,689 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365585,316,306 - 5,355,442 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1435,313,629 - 35,356,842 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11435,313,608 - 35,354,859 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21437,533,296 - 37,574,536 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO21
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111112,456,262 - 112,504,730 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11112,456,191 - 112,504,703 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037132,576,709 - 132,626,041 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474716,130,125 - 16,168,030 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474716,130,099 - 16,167,869 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fbxo21
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11635,817,662 - 35,851,771 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fbxo21
170 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:920
Count of miRNA genes:305
Interacting mature miRNAs:381
Transcripts:ENSRNOT00000064900
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123776414551558799Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)124413955852308831Rat

Markers in Region
BE111456  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21238,572,383 - 38,572,587 (+)MAPPERmRatBN7.2
Rnor_6.01244,245,999 - 44,246,202NCBIRnor6.0
Rnor_5.01246,076,562 - 46,076,765UniSTSRnor5.0
RGSC_v3.41239,721,196 - 39,721,399UniSTSRGSC3.4
Celera1240,230,583 - 40,230,786UniSTS
RH 3.4 Map12722.4UniSTS
Cytogenetic Map12q16UniSTS
RH128260  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21238,571,133 - 38,571,347 (+)MAPPERmRatBN7.2
Rnor_6.01244,244,749 - 44,244,962NCBIRnor6.0
Rnor_5.01246,075,312 - 46,075,525UniSTSRnor5.0
RGSC_v3.41239,719,946 - 39,720,159UniSTSRGSC3.4
Celera1240,229,333 - 40,229,546UniSTS
RH 3.4 Map12707.9UniSTS
Cytogenetic Map12q16UniSTS
RH135131  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21238,571,931 - 38,572,117 (+)MAPPERmRatBN7.2
Rnor_6.01244,245,547 - 44,245,732NCBIRnor6.0
Rnor_5.01246,076,110 - 46,076,295UniSTSRnor5.0
RGSC_v3.41239,720,744 - 39,720,929UniSTSRGSC3.4
Celera1240,230,131 - 40,230,316UniSTS
RH 3.4 Map12707.9UniSTS
Cytogenetic Map12q16UniSTS
UniSTS:238074  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21238,592,125 - 38,592,591 (+)MAPPERmRatBN7.2
Rnor_6.01244,265,792 - 44,266,257NCBIRnor6.0
Rnor_5.01246,096,355 - 46,096,820UniSTSRnor5.0
RGSC_v3.41239,740,940 - 39,741,405UniSTSRGSC3.4
Celera1240,250,492 - 40,250,957UniSTS
Cytogenetic Map12q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000064900   ⟹   ENSRNOP00000059243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1244,231,923 - 44,266,035 (-)Ensembl
mRatBN7.2 Ensembl1238,571,023 - 38,605,133 (-)Ensembl
Rnor_6.0 Ensembl1244,246,508 - 44,279,002 (-)Ensembl
RefSeq Acc Id: NM_001108338   ⟹   NP_001101808
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,231,918 - 44,266,035 (-)NCBI
mRatBN7.21238,571,018 - 38,605,133 (-)NCBI
Rnor_6.01244,244,633 - 44,279,044 (-)NCBI
Rnor_5.01246,075,020 - 46,109,147 (-)NCBI
RGSC_v3.41239,719,654 - 39,753,892 (-)RGD
Celera1240,229,218 - 40,263,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089601   ⟹   XP_038945529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81244,231,918 - 44,266,026 (-)NCBI
mRatBN7.21238,570,878 - 38,605,091 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001101808 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945529 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58867 (Get FASTA)   NCBI Sequence Viewer  
  EDM13815 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059243
  ENSRNOP00000059243.4
RefSeq Acc Id: NP_001101808   ⟸   NM_001108338
- UniProtKB: A6J1M6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059243   ⟸   ENSRNOT00000064900
RefSeq Acc Id: XP_038945529   ⟸   XM_039089601
- Peptide Label: isoform X1
- UniProtKB: F1M5Q6 (UniProtKB/TrEMBL),   A6J1M6 (UniProtKB/TrEMBL)
Protein Domains
F-box   Hemimethylated DNA-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M5Q6-F1-model_v2 AlphaFold F1M5Q6 1-619 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698673
Promoter ID:EPDNEW_R9198
Type:multiple initiation site
Name:Fbxo21_1
Description:F-box protein 21
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01244,279,016 - 44,279,076EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307346 AgrOrtholog
BioCyc Gene G2FUF-19073 BioCyc
Ensembl Genes ENSRNOG00000001129 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064900 ENTREZGENE
  ENSRNOT00000064900.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  2.30.30.390 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5620924 IMAGE-MGC_LOAD
InterPro F-box_dom UniProtKB/TrEMBL
  F-box_dom_like UniProtKB/TrEMBL
  Hemimethylated_DNA-bd_dom UniProtKB/TrEMBL
  Hemimethylated_DNA-bd_sf UniProtKB/TrEMBL
  SirB1_N UniProtKB/TrEMBL
KEGG Report rno:360818 UniProtKB/TrEMBL
MGC_CLONE MGC:188488 IMAGE-MGC_LOAD
NCBI Gene 360818 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 21 UniProtKB/TrEMBL
  SI:DKEY-261L7.2 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  Transglut_core2 UniProtKB/TrEMBL
  YccV-like UniProtKB/TrEMBL
PhenoGen Fbxo21 PhenoGen
PROSITE FBOX UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001129 RatGTEx
SMART YccV-like UniProtKB/TrEMBL
Superfamily-SCOP SSF141255 UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt A6J1M6 ENTREZGENE, UniProtKB/TrEMBL
  B0BNL1_RAT UniProtKB/TrEMBL
  F1M5Q6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Fbxo21  F-box protein 21  Fbxo21_predicted  F-box only protein 21 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Fbxo21_predicted  F-box only protein 21 (predicted)      Symbol and Name status set to approved 70820 APPROVED