Cenpm (centromere protein M) - Rat Genome Database

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Gene: Cenpm (centromere protein M) Rattus norvegicus
Analyze
Symbol: Cenpm
Name: centromere protein M
RGD ID: 1307309
Description: Predicted to be located in cytoplasm; kinetochore; and nucleus. Predicted to be part of inner kinetochore. Orthologous to human CENPM (centromere protein M); INTERACTS WITH (+)-schisandrin B; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC315164; RGD1307309; similar to proliferation associated nuclear element 1 isoform 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,628,117 - 115,639,401 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7115,628,129 - 115,643,866 (-)EnsemblGRCr8
mRatBN7.27113,748,026 - 113,759,296 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,747,516 - 113,764,258 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7115,503,999 - 115,515,163 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,727,507 - 117,738,671 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,696,944 - 117,708,113 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,464,615 - 123,476,336 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,464,490 - 123,476,238 (-)Ensemblrn6Rnor6.0
Rnor_5.07123,449,297 - 123,461,064 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47120,607,395 - 120,619,299 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7110,063,181 - 110,074,319 (-)NCBICelera
RGSC_v3.17120,641,400 - 120,653,486 (-)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
1,4-dichlorobenzene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
diallyl trisulfide  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
gentamycin  (EXP)
GW 7647  (ISO)
lidocaine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
N(4)-hydroxycytidine  (ISO)
N-Nitrosopyrrolidine  (ISO)
naphthalene  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
resveratrol  (ISO)
rotenone  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Cenpm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,628,117 - 115,639,401 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7115,628,129 - 115,643,866 (-)EnsemblGRCr8
mRatBN7.27113,748,026 - 113,759,296 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,747,516 - 113,764,258 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7115,503,999 - 115,515,163 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,727,507 - 117,738,671 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,696,944 - 117,708,113 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,464,615 - 123,476,336 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,464,490 - 123,476,238 (-)Ensemblrn6Rnor6.0
Rnor_5.07123,449,297 - 123,461,064 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47120,607,395 - 120,619,299 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7110,063,181 - 110,074,319 (-)NCBICelera
RGSC_v3.17120,641,400 - 120,653,486 (-)NCBI
Cytogenetic Map7q34NCBI
CENPM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,927,196 - 41,947,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,927,514 - 41,947,183 (-)Ensemblhg38GRCh38
GRCh372242,334,741 - 42,343,156 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,664,687 - 40,673,094 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342240,659,241 - 40,667,648NCBI
Celera2226,140,977 - 26,149,371 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2225,300,335 - 25,309,447 (-)NCBIHuRef
CHM1_12242,294,942 - 42,303,381 (-)NCBICHM1_1
T2T-CHM13v2.02242,406,055 - 42,426,765 (-)NCBIT2T-CHM13v2.0
Cenpm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391582,115,694 - 82,128,974 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1582,117,980 - 82,128,949 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381582,233,762 - 82,244,773 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1582,233,779 - 82,244,748 (-)Ensemblmm10GRCm38
MGSCv371582,064,192 - 82,075,177 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361582,061,848 - 82,072,513 (-)NCBIMGSCv36mm8
Celera1584,357,816 - 84,368,798 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.56NCBI
Cenpm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541327,349,283 - 27,360,052 (-)Ensembl
ChiLan1.0NW_00495541327,349,283 - 27,360,052 (-)NCBIChiLan1.0ChiLan1.0
CENPM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,768,489 - 51,806,302 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12254,467,727 - 54,505,489 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,831,313 - 22,839,947 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,915,404 - 40,923,765 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2240,915,404 - 40,923,765 (-)EnsemblpanPan2panpan1.1
CENPM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,413,177 - 23,425,559 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,412,393 - 23,425,981 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1023,347,239 - 23,359,600 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01024,158,132 - 24,170,505 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,157,349 - 24,169,945 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11023,875,139 - 23,887,501 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,196,181 - 24,208,759 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,370,522 - 24,382,884 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cenpm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,064,736 - 7,078,276 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649275,238 - 87,912 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649275,196 - 88,446 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl56,677,717 - 6,690,308 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.156,677,607 - 6,690,322 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CENPM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11924,471,420 - 24,481,271 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1924,471,178 - 24,481,239 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045100,931,131 - 100,941,179 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cenpm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247526,781,529 - 6,790,518 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247526,781,504 - 6,790,520 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cenpm
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11251,962,247 - 251,972,062 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cenpm
144 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:170
Count of miRNA genes:129
Interacting mature miRNAs:140
Transcripts:ENSRNOT00000036917
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 91 59 6 355 191 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000036917   ⟹   ENSRNOP00000033005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7115,628,129 - 115,639,367 (-)Ensembl
mRatBN7.2 Ensembl7113,747,516 - 113,759,267 (-)Ensembl
Rnor_6.0 Ensembl7123,464,490 - 123,476,238 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105063   ⟹   ENSRNOP00000096617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7115,628,129 - 115,640,392 (-)Ensembl
mRatBN7.2 Ensembl7113,748,020 - 113,758,953 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119853   ⟹   ENSRNOP00000095368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7115,628,129 - 115,643,866 (-)Ensembl
mRatBN7.2 Ensembl7113,747,516 - 113,764,258 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000137109   ⟹   ENSRNOP00000099394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7115,628,129 - 115,639,372 (-)Ensembl
RefSeq Acc Id: NM_001130504   ⟹   NP_001123976
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,628,129 - 115,639,367 (-)NCBI
mRatBN7.27113,748,038 - 113,759,281 (-)NCBI
Rnor_6.07123,464,839 - 123,476,068 (-)NCBI
Rnor_5.07123,449,297 - 123,461,064 (-)NCBI
RGSC_v3.47120,607,395 - 120,619,299 (-)RGD
Celera7110,063,181 - 110,074,319 (-)RGD
Sequence:
RefSeq Acc Id: XM_008765720   ⟹   XP_008763942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,628,117 - 115,639,401 (-)NCBI
mRatBN7.27113,748,026 - 113,759,296 (-)NCBI
Rnor_6.07123,464,615 - 123,476,326 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063263620   ⟹   XP_063119690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,628,117 - 115,638,985 (-)NCBI
RefSeq Acc Id: NP_001123976   ⟸   NM_001130504
- UniProtKB: D4AC25 (UniProtKB/TrEMBL),   A6HT51 (UniProtKB/TrEMBL),   A0A8I6AQ90 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763942   ⟸   XM_008765720
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000033005   ⟸   ENSRNOT00000036917
Ensembl Acc Id: ENSRNOP00000095368   ⟸   ENSRNOT00000119853
Ensembl Acc Id: ENSRNOP00000096617   ⟸   ENSRNOT00000105063
RefSeq Acc Id: XP_063119690   ⟸   XM_063263620
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000099394   ⟸   ENSRNOT00000137109

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AC25-F1-model_v2 AlphaFold D4AC25 1-180 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695531
Promoter ID:EPDNEW_R6055
Type:initiation region
Name:Cenpm_1
Description:centromere protein M
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07123,476,058 - 123,476,118EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307309 AgrOrtholog
BioCyc Gene G2FUF-32636 BioCyc
Ensembl Genes ENSRNOG00000023262 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036917 ENTREZGENE
  ENSRNOT00000036917.7 UniProtKB/TrEMBL
  ENSRNOT00000105063.2 UniProtKB/TrEMBL
  ENSRNOT00000119853.2 UniProtKB/TrEMBL
  ENSRNOT00000137109.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Centromere_Cenp-M UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:315164 UniProtKB/TrEMBL
NCBI Gene 315164 ENTREZGENE
PANTHER CENTROMERE PROTEIN M UniProtKB/TrEMBL
  PTHR34436 UniProtKB/TrEMBL
Pfam CENP-M UniProtKB/TrEMBL
PhenoGen Cenpm PhenoGen
RatGTEx ENSRNOG00000023262 RatGTEx
UniProt A0A8I6AQ90 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATM8_RAT UniProtKB/TrEMBL
  A0ABK0L681_RAT UniProtKB/TrEMBL
  A6HT51 ENTREZGENE, UniProtKB/TrEMBL
  D4AC25 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Cenpm  centromere protein M  RGD1307309_predicted  similar to proliferation associated nuclear element 1 isoform 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1307309_predicted  similar to proliferation associated nuclear element 1 isoform 1 (predicted)  LOC315164_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315164_predicted  similar to proliferation associated nuclear element 1 isoform 1 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL