Pgap4 (post-GPI attachment to proteins GalNAc transferase 4) - Rat Genome Database

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Gene: Pgap4 (post-GPI attachment to proteins GalNAc transferase 4) Rattus norvegicus
Analyze
Symbol: Pgap4
Name: post-GPI attachment to proteins GalNAc transferase 4
RGD ID: 1307218
Description: Predicted to enable glycosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be active in Golgi membrane. Orthologous to human PGAP4 (post-GPI attachment to proteins GalNAc transferase 4); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GPI-GalNAc transferase PGAP4; GPI-N-acetylgalactosamine transferase PGAP4; LOC362518; MGC109354; post-GPI attachment to proteins factor 4; RGD1307218; similar to RIKEN cDNA 2810432L12; Tmem246; transmembrane protein 246; transmembrane protein C9orf125 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8568,727,422 - 68,742,571 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl568,723,625 - 68,771,167 (-)EnsemblGRCr8
mRatBN7.2563,931,916 - 63,947,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl563,930,682 - 63,951,716 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx565,863,170 - 65,864,940 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0567,682,510 - 67,684,280 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0567,651,883 - 67,653,653 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0564,848,657 - 64,867,925 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl564,848,658 - 64,850,427 (-)Ensemblrn6Rnor6.0
Rnor_5.0569,342,418 - 69,357,511 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4566,327,277 - 66,329,047 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera563,674,478 - 63,676,248 (+)NCBICelera
RGSC_v3.1566,332,390 - 66,334,160 (-)NCBI
Cytogenetic Map5q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi membrane  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:29374258  


Genomics

Comparative Map Data
Pgap4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8568,727,422 - 68,742,571 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl568,723,625 - 68,771,167 (-)EnsemblGRCr8
mRatBN7.2563,931,916 - 63,947,004 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl563,930,682 - 63,951,716 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx565,863,170 - 65,864,940 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0567,682,510 - 67,684,280 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0567,651,883 - 67,653,653 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0564,848,657 - 64,867,925 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl564,848,658 - 64,850,427 (-)Ensemblrn6Rnor6.0
Rnor_5.0569,342,418 - 69,357,511 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4566,327,277 - 66,329,047 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera563,674,478 - 63,676,248 (+)NCBICelera
RGSC_v3.1566,332,390 - 66,334,160 (-)NCBI
Cytogenetic Map5q22NCBI
PGAP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389101,473,170 - 101,533,686 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9101,473,170 - 101,533,537 (-)Ensemblhg38GRCh38
GRCh379104,235,452 - 104,249,455 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369103,277,429 - 103,289,296 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349101,317,163 - 101,329,030NCBI
Celera974,751,854 - 74,763,731 (-)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef973,837,697 - 73,849,570 (-)NCBIHuRef
CHM1_19104,383,336 - 104,395,208 (-)NCBICHM1_1
T2T-CHM13v2.09113,644,475 - 113,660,514 (-)NCBIT2T-CHM13v2.0
Pgap4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39449,584,506 - 49,597,876 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl449,584,506 - 49,597,876 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38449,584,506 - 49,597,876 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl449,584,506 - 49,597,876 (-)Ensemblmm10GRCm38
MGSCv37449,597,378 - 49,610,742 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36449,605,677 - 49,618,903 (-)NCBIMGSCv36mm8
Celera449,612,754 - 49,626,050 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map426.63NCBI
Pgap4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541924,334,402 - 24,344,390 (+)Ensembl
ChiLan1.0NW_00495541924,334,402 - 24,344,390 (+)NCBIChiLan1.0ChiLan1.0
PGAP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21137,876,232 - 37,890,149 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1937,878,604 - 37,892,534 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0972,681,145 - 72,695,185 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19100,673,421 - 100,689,342 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9100,677,944 - 100,679,155 (-)EnsemblpanPan2panpan1.1
PGAP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11158,197,396 - 58,218,776 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1158,200,051 - 58,201,262 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1156,638,229 - 56,663,017 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01159,329,287 - 59,354,084 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1159,335,130 - 59,353,954 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11157,839,071 - 57,863,865 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01157,852,065 - 57,876,840 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01158,549,740 - 58,574,549 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pgap4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947173,080,379 - 173,092,455 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365249,627,945 - 9,640,031 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365249,627,945 - 9,640,026 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGAP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1243,168,416 - 243,190,242 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11243,167,328 - 243,190,281 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21271,787,028 - 271,804,610 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PGAP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11237,954,896 - 37,967,400 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1237,965,634 - 37,966,845 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660354,586,186 - 4,599,031 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pgap4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247589,819,541 - 9,832,529 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pgap4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1757,296,478 - 57,310,830 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pgap4
88 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:20
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000008883
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)53275164977751649Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)53331167378311673Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)53275164977751649Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53331167378311673Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat

Markers in Region
RH137822  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2563,931,967 - 63,932,120 (+)MAPPERmRatBN7.2
Rnor_6.0564,848,695 - 64,848,847NCBIRnor6.0
Rnor_5.0569,342,476 - 69,342,628UniSTSRnor5.0
RGSC_v3.4566,327,315 - 66,327,467UniSTSRGSC3.4
Celera563,676,058 - 63,676,210UniSTS
RH 3.4 Map5428.4UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 87 59 6 351 187 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000008883   ⟹   ENSRNOP00000008883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl568,727,442 - 68,771,167 (-)Ensembl
mRatBN7.2 Ensembl563,931,396 - 63,947,847 (-)Ensembl
Rnor_6.0 Ensembl564,848,658 - 64,850,427 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104584   ⟹   ENSRNOP00000097268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl568,724,070 - 68,742,824 (-)Ensembl
mRatBN7.2 Ensembl563,930,682 - 63,951,716 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000126055   ⟹   ENSRNOP00000111028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl568,727,444 - 68,738,430 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000129014   ⟹   ENSRNOP00000112236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl568,724,090 - 68,742,613 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000158578   ⟹   ENSRNOP00000104322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl568,725,556 - 68,742,263 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000168919   ⟹   ENSRNOP00000100026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl568,723,625 - 68,742,824 (-)Ensembl
RefSeq Acc Id: NM_001014190   ⟹   NP_001014212
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8568,727,422 - 68,729,192 (-)NCBI
mRatBN7.2563,931,930 - 63,933,700 (-)NCBI
Rnor_6.0564,848,657 - 64,850,427 (-)NCBI
Rnor_5.0569,342,418 - 69,357,511 (-)NCBI
RGSC_v3.4566,327,277 - 66,329,047 (-)RGD
Celera563,674,478 - 63,676,248 (+)RGD
Sequence:
RefSeq Acc Id: XM_006238158   ⟹   XP_006238220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8568,727,422 - 68,742,571 (-)NCBI
mRatBN7.2563,931,916 - 63,947,004 (-)NCBI
Rnor_6.0564,848,657 - 64,865,029 (-)NCBI
Rnor_5.0569,342,418 - 69,357,511 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006238159   ⟹   XP_006238221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8568,727,422 - 68,742,485 (-)NCBI
mRatBN7.2563,931,916 - 63,946,737 (-)NCBI
Rnor_6.0564,848,657 - 64,863,486 (-)NCBI
Rnor_5.0569,342,418 - 69,357,511 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593473   ⟹   XP_017448962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8568,727,422 - 68,742,217 (-)NCBI
mRatBN7.2563,931,916 - 63,946,738 (-)NCBI
Rnor_6.0564,848,657 - 64,863,486 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593474   ⟹   XP_017448963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8568,727,422 - 68,734,338 (-)NCBI
mRatBN7.2563,931,916 - 63,938,604 (-)NCBI
Rnor_6.0564,848,657 - 64,857,002 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001014212   ⟸   NM_001014190
- UniProtKB: Q5EB73 (UniProtKB/Swiss-Prot),   A6KJD7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238220   ⟸   XM_006238158
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006238221   ⟸   XM_006238159
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017448962   ⟸   XM_017593473
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017448963   ⟸   XM_017593474
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000008883   ⟸   ENSRNOT00000008883
Ensembl Acc Id: ENSRNOP00000097268   ⟸   ENSRNOT00000104584
Ensembl Acc Id: ENSRNOP00000100026   ⟸   ENSRNOT00000168919
Ensembl Acc Id: ENSRNOP00000111028   ⟸   ENSRNOT00000126055
Ensembl Acc Id: ENSRNOP00000104322   ⟸   ENSRNOT00000158578
Ensembl Acc Id: ENSRNOP00000112236   ⟸   ENSRNOT00000129014

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5EB73-F1-model_v2 AlphaFold Q5EB73 1-403 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307218 AgrOrtholog
BioCyc Gene G2FUF-41325 BioCyc
Ensembl Genes ENSRNOG00000006800 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000008883 ENTREZGENE
  ENSRNOT00000008883.8 UniProtKB/Swiss-Prot
  ENSRNOT00000104584 ENTREZGENE
  ENSRNOT00000104584.1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7315559 IMAGE-MGC_LOAD
InterPro TMEM246 UniProtKB/Swiss-Prot
KEGG Report rno:362518 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109354 IMAGE-MGC_LOAD
NCBI Gene 362518 ENTREZGENE
PANTHER POST-GPI ATTACHMENT TO PROTEINS FACTOR 4 UniProtKB/Swiss-Prot
  PTHR31410 UniProtKB/Swiss-Prot
PhenoGen Pgap4 PhenoGen
RatGTEx ENSRNOG00000006800 RatGTEx
UniProt A6KJD7 ENTREZGENE, UniProtKB/TrEMBL
  Q5EB73 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Pgap4  post-GPI attachment to proteins GalNAc transferase 4  Tmem246  transmembrane protein 246  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Tmem246  transmembrane protein 246  RGD1307218  similar to RIKEN cDNA 2810432L12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1307218  similar to RIKEN cDNA 2810432L12  RGD1307218_predicted  similar to RIKEN cDNA 2810432L12 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307218_predicted  similar to RIKEN cDNA 2810432L12 (predicted)  LOC362518_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362518_predicted  similar to RIKEN cDNA 2810432L12 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL