Npas3 (neuronal PAS domain protein 3) - Rat Genome Database

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Gene: Npas3 (neuronal PAS domain protein 3) Rattus norvegicus
Analyze
Symbol: Npas3
Name: neuronal PAS domain protein 3
RGD ID: 1307181
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Predicted to be involved in positive regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within locomotory behavior; maternal behavior; and startle response. Predicted to be active in nucleus. Orthologous to human NPAS3 (neuronal PAS domain protein 3); INTERACTS WITH 17beta-estradiol; acrylamide; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC299016; neuronal PAS domain-containing protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8676,438,064 - 77,263,185 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl676,438,260 - 77,263,185 (+)EnsemblGRCr8
mRatBN7.2670,702,773 - 71,527,928 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl670,703,170 - 71,524,884 (+)EnsemblmRatBN7.2
Rnor_6.0674,081,995 - 74,913,025 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0683,635,089 - 84,459,466 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4674,192,110 - 74,209,762 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera669,567,922 - 70,382,732 (+)NCBICelera
RGSC_v3.1674,075,148 - 74,329,176 (+)NCBI
Cytogenetic Map6q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7743923   PMID:15347806   PMID:25862168   PMID:27782878  


Genomics

Comparative Map Data
Npas3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8676,438,064 - 77,263,185 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl676,438,260 - 77,263,185 (+)EnsemblGRCr8
mRatBN7.2670,702,773 - 71,527,928 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl670,703,170 - 71,524,884 (+)EnsemblmRatBN7.2
Rnor_6.0674,081,995 - 74,913,025 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0683,635,089 - 84,459,466 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4674,192,110 - 74,209,762 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera669,567,922 - 70,382,732 (+)NCBICelera
RGSC_v3.1674,075,148 - 74,329,176 (+)NCBI
Cytogenetic Map6q23NCBI
NPAS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381432,934,785 - 33,804,173 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1432,934,396 - 33,820,863 (+)Ensemblhg38GRCh38
GRCh371433,408,085 - 34,273,379 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361432,478,200 - 33,340,702 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341432,478,273 - 33,340,066NCBI
Celera1413,273,962 - 14,138,956 (+)NCBICelera
Cytogenetic Map14q13.1NCBI
HuRef1413,641,962 - 14,390,327 (+)NCBIHuRef
CHM1_11433,407,064 - 34,271,980 (+)NCBICHM1_1
T2T-CHM13v2.01427,131,685 - 28,001,533 (+)NCBIT2T-CHM13v2.0
Npas3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391253,294,874 - 54,118,956 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1253,294,940 - 54,118,958 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381253,248,026 - 54,072,173 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1253,248,677 - 54,072,175 (+)Ensemblmm10GRCm38
GRCm38.p6 Ensembl1253,248,157 - 54,072,175 (+)Ensemblmm10GRCm38
MGSCv371254,349,664 - 55,173,162 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361254,170,303 - 54,990,700 (+)NCBIMGSCv36mm8
Celera1254,549,790 - 55,376,477 (+)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1222.31NCBI
Npas3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540927,137,667 - 27,975,282 (-)Ensembl
ChiLan1.0NW_00495540927,134,610 - 27,975,282 (-)NCBIChiLan1.0ChiLan1.0
NPAS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21534,254,792 - 35,121,949 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11433,471,295 - 34,338,452 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01413,701,786 - 14,568,738 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11431,990,835 - 32,759,347 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1431,893,101 - 32,758,096 (+)EnsemblpanPan2panpan1.1
NPAS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1811,959,895 - 12,799,448 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha811,763,424 - 12,608,564 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0812,062,501 - 12,903,397 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl812,061,655 - 12,900,182 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1811,746,047 - 12,585,489 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0811,827,729 - 12,667,988 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0812,112,108 - 12,957,329 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Npas3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864043,803,562 - 44,639,066 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364947,310,005 - 8,143,610 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364947,965,156 - 8,144,244 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPAS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl765,928,075 - 66,800,991 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1765,924,986 - 66,800,820 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2770,862,116 - 70,974,873 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NPAS3
(Chlorocebus sabaeus - green monkey)		 No map positions available.
Npas3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248383,006,512 - 3,904,799 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248383,003,455 - 3,904,964 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Npas3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1766,627,620 - 67,442,172 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Npas3
4678 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:103
Interacting mature miRNAs:113
Transcripts:ENSRNOT00000049945
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat

Markers in Region
RH131599  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2671,410,376 - 71,410,591 (+)MAPPERmRatBN7.2
Rnor_6.0674,795,759 - 74,795,973NCBIRnor6.0
Rnor_5.0684,341,739 - 84,341,953UniSTSRnor5.0
RGSC_v3.4674,209,600 - 74,209,814UniSTSRGSC3.4
Celera670,265,014 - 70,265,228UniSTS
Cytogenetic Map6q23UniSTS
BE103570  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2670,845,494 - 70,845,651 (+)MAPPERmRatBN7.2
Rnor_6.0674,218,628 - 74,218,784NCBIRnor6.0
Rnor_5.0683,771,059 - 83,771,215UniSTSRnor5.0
RGSC_v3.4673,603,406 - 73,603,562UniSTSRGSC3.4
Celera669,704,588 - 69,704,744UniSTS
Cytogenetic Map6q23UniSTS
RH141323  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2671,526,284 - 71,526,481 (+)MAPPERmRatBN7.2
Rnor_6.0674,913,333 - 74,913,529NCBIRnor6.0
Rnor_5.0684,457,823 - 84,458,019UniSTSRnor5.0
RGSC_v3.4674,326,863 - 74,327,059UniSTSRGSC3.4
Celera670,381,089 - 70,381,285UniSTS
Cytogenetic Map6q23UniSTS
AU049986  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2671,437,889 - 71,438,156 (+)MAPPERmRatBN7.2
Rnor_6.0674,823,549 - 74,823,815NCBIRnor6.0
Rnor_5.0684,369,529 - 84,369,795UniSTSRnor5.0
RGSC_v3.4674,237,110 - 74,237,376UniSTSRGSC3.4
Celera670,292,531 - 70,292,797UniSTS
Cytogenetic Map6q23UniSTS
fc03e11.x1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2671,428,963 - 71,429,882 (+)MAPPERmRatBN7.2
Rnor_6.0674,814,625 - 74,815,541NCBIRnor6.0
Rnor_5.0684,360,605 - 84,361,521UniSTSRnor5.0
RGSC_v3.4674,228,186 - 74,229,102UniSTSRGSC3.4
Celera670,283,607 - 70,284,523UniSTS
Cytogenetic Map6q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 15 52 17 78 42 11 51 29 32 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000097038   ⟹   ENSRNOP00000094656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl676,676,547 - 77,261,142 (+)Ensembl
mRatBN7.2 Ensembl670,703,257 - 71,524,884 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109465   ⟹   ENSRNOP00000096479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl676,652,819 - 77,261,142 (+)Ensembl
mRatBN7.2 Ensembl670,707,591 - 71,524,884 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115753   ⟹   ENSRNOP00000096867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl676,438,307 - 77,263,185 (+)Ensembl
mRatBN7.2 Ensembl670,703,170 - 71,524,884 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129336   ⟹   ENSRNOP00000104884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl676,674,231 - 77,263,185 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000152609   ⟹   ENSRNOP00000112538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl676,442,687 - 77,263,185 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000166002   ⟹   ENSRNOP00000108681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl676,533,308 - 77,263,185 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000166789   ⟹   ENSRNOP00000104570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl676,442,687 - 77,263,185 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000173624   ⟹   ENSRNOP00000099955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl676,438,260 - 77,263,185 (+)Ensembl
RefSeq Acc Id: NM_001427296   ⟹   NP_001414225
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,307 - 77,263,185 (+)NCBI
RefSeq Acc Id: XM_039078152   ⟹   XP_038934080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,064 - 77,263,182 (+)NCBI
mRatBN7.2670,702,773 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078153   ⟹   XP_038934081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,064 - 77,263,182 (+)NCBI
mRatBN7.2670,702,773 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078154   ⟹   XP_038934082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,064 - 77,263,182 (+)NCBI
mRatBN7.2670,702,774 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078155   ⟹   XP_038934083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,065 - 77,263,182 (+)NCBI
mRatBN7.2670,702,774 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078156   ⟹   XP_038934084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,069 - 77,263,182 (+)NCBI
mRatBN7.2670,702,775 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078157   ⟹   XP_038934085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,067 - 77,263,182 (+)NCBI
mRatBN7.2670,702,774 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078158   ⟹   XP_038934086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,069 - 77,263,182 (+)NCBI
mRatBN7.2670,702,775 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078160   ⟹   XP_038934088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,064 - 77,263,182 (+)NCBI
mRatBN7.2670,702,774 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078161   ⟹   XP_038934089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,442,804 - 77,263,182 (+)NCBI
mRatBN7.2670,706,894 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078162   ⟹   XP_038934090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,067 - 77,263,182 (+)NCBI
mRatBN7.2670,702,775 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078163   ⟹   XP_038934091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,070 - 77,263,182 (+)NCBI
mRatBN7.2670,702,776 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078164   ⟹   XP_038934092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,665,738 - 77,263,182 (+)NCBI
mRatBN7.2670,930,752 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_039078165   ⟹   XP_038934093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,442,803 - 77,263,182 (+)NCBI
mRatBN7.2670,706,894 - 71,527,928 (+)NCBI
RefSeq Acc Id: XM_063261674   ⟹   XP_063117744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,438,069 - 77,263,182 (+)NCBI
RefSeq Acc Id: XM_063261675   ⟹   XP_063117745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8676,442,803 - 77,263,182 (+)NCBI
RefSeq Acc Id: XP_038934080   ⟸   XM_039078152
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934081   ⟸   XM_039078153
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934082   ⟸   XM_039078154
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934083   ⟸   XM_039078155
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934085   ⟸   XM_039078157
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934088   ⟸   XM_039078160
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934084   ⟸   XM_039078156
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934086   ⟸   XM_039078158
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934090   ⟸   XM_039078162
- Peptide Label: isoform X11
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934091   ⟸   XM_039078163
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AR06 (UniProtKB/TrEMBL),   A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934089   ⟸   XM_039078161
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934093   ⟸   XM_039078165
- Peptide Label: isoform X14
- UniProtKB: A0A8I6APE0 (UniProtKB/TrEMBL),   A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934092   ⟸   XM_039078164
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096867   ⟸   ENSRNOT00000115753
Ensembl Acc Id: ENSRNOP00000096479   ⟸   ENSRNOT00000109465
Ensembl Acc Id: ENSRNOP00000094656   ⟸   ENSRNOT00000097038
RefSeq Acc Id: XP_063117744   ⟸   XM_063261674
- Peptide Label: isoform X10
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414225   ⟸   NM_001427296
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117745   ⟸   XM_063261675
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AMQ0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000099955   ⟸   ENSRNOT00000173624
Ensembl Acc Id: ENSRNOP00000112538   ⟸   ENSRNOT00000152609
Ensembl Acc Id: ENSRNOP00000108681   ⟸   ENSRNOT00000166002
Ensembl Acc Id: ENSRNOP00000104884   ⟸   ENSRNOT00000129336
Ensembl Acc Id: ENSRNOP00000104570   ⟸   ENSRNOT00000166789

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307181 AgrOrtholog
BioCyc Gene G2FUF-37564 BioCyc
Ensembl Genes ENSRNOG00000068162 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000097038.2 UniProtKB/TrEMBL
  ENSRNOT00000109465 ENTREZGENE
  ENSRNOT00000109465.2 UniProtKB/TrEMBL
  ENSRNOT00000115753 ENTREZGENE
  ENSRNOT00000115753.2 UniProtKB/TrEMBL
  ENSRNOT00000129336.1 UniProtKB/TrEMBL
  ENSRNOT00000152609 ENTREZGENE
  ENSRNOT00000152609.1 UniProtKB/TrEMBL
  ENSRNOT00000166002 ENTREZGENE
  ENSRNOT00000166002.1 UniProtKB/TrEMBL
  ENSRNOT00000166789 ENTREZGENE
  ENSRNOT00000166789.1 UniProtKB/TrEMBL
  ENSRNOT00000173624 ENTREZGENE
  ENSRNOT00000173624.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
  PAS domain UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS-like_dom_sf UniProtKB/TrEMBL
  PAS_fold UniProtKB/TrEMBL
  PAS_fold_3 UniProtKB/TrEMBL
NCBI Gene 299016 ENTREZGENE
PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA UniProtKB/TrEMBL
  NEURONAL PAS DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam bHLH_HIF1A UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
  PAS_3 UniProtKB/TrEMBL
PhenoGen Npas3 PhenoGen
PROSITE BHLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000068162 RatGTEx
SMART HLH UniProtKB/TrEMBL
  PAS UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
  SSF55785 UniProtKB/TrEMBL
UniProt A0A8I6AMQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6APE0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AR06 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LDA3_RAT UniProtKB/TrEMBL
  A0ABK0LGI6_RAT UniProtKB/TrEMBL
  A0ABK0LMY1_RAT UniProtKB/TrEMBL
  A0ABK0LSK6_RAT UniProtKB/TrEMBL
  A0ABK0M580_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Npas3  neuronal PAS domain protein 3  Npas3  neuronal PAS domain protein 3  Data merged from RGD:149736521 737654 PROVISIONAL
2021-08-09 Npas3  neuronal PAS domain protein 3      Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 Npas3  neuronal PAS domain protein 3   Npas3_predicted  neuronal PAS domain protein 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Npas3_predicted  neuronal PAS domain protein 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED