Got1l1 (glutamic-oxaloacetic transaminase 1-like 1) - Rat Genome Database

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Gene: Got1l1 (glutamic-oxaloacetic transaminase 1-like 1) Rattus norvegicus
Analyze
Symbol: Got1l1
Name: glutamic-oxaloacetic transaminase 1-like 1
RGD ID: 1307172
Description: Predicted to enable L-aspartate:2-oxoglutarate aminotransferase activity. Predicted to be involved in aspartate biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human GOT1L1 (glutamic-oxaloacetic transaminase 1 like 1); INTERACTS WITH 6-propyl-2-thiouracil; aflatoxin B1; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306540; putative aspartate aminotransferase, cytoplasmic 2; RGD1307172; similar to hypothetical protein MGC33309
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81671,563,562 - 71,576,446 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1671,563,534 - 71,570,468 (+)EnsemblGRCr8
mRatBN7.21664,860,308 - 64,873,656 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1664,860,704 - 64,866,162 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1670,144,505 - 70,149,899 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01673,550,847 - 73,556,241 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01668,796,087 - 68,801,539 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01669,022,756 - 69,035,507 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1669,022,784 - 69,028,179 (+)Ensemblrn6Rnor6.0
Rnor_5.01668,692,819 - 68,698,296 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41669,182,536 - 69,188,087 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1662,782,195 - 62,787,179 (+)NCBICelera
RGSC_v3.11669,182,741 - 69,188,296 (+)NCBI
Cytogenetic Map16q12.3NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:25646960  


Genomics

Comparative Map Data
Got1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81671,563,562 - 71,576,446 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1671,563,534 - 71,570,468 (+)EnsemblGRCr8
mRatBN7.21664,860,308 - 64,873,656 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1664,860,704 - 64,866,162 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1670,144,505 - 70,149,899 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01673,550,847 - 73,556,241 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01668,796,087 - 68,801,539 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01669,022,756 - 69,035,507 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1669,022,784 - 69,028,179 (+)Ensemblrn6Rnor6.0
Rnor_5.01668,692,819 - 68,698,296 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41669,182,536 - 69,188,087 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1662,782,195 - 62,787,179 (+)NCBICelera
RGSC_v3.11669,182,741 - 69,188,296 (+)NCBI
Cytogenetic Map16q12.3NCBI
GOT1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38837,934,281 - 37,940,124 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl837,934,281 - 37,940,124 (-)Ensemblhg38GRCh38
GRCh37837,791,799 - 37,797,642 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36837,910,957 - 37,916,804 (-)NCBIBuild 36Build 36hg18NCBI36
Celera836,743,506 - 36,749,358 (-)NCBICelera
Cytogenetic Map8p11.23NCBI
HuRef836,326,211 - 36,332,060 (-)NCBIHuRef
CHM1_1837,993,266 - 37,999,114 (-)NCBICHM1_1
T2T-CHM13v2.0838,210,697 - 38,216,524 (-)NCBIT2T-CHM13v2.0
Got1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39827,687,487 - 27,713,872 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl827,687,487 - 27,713,856 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38827,197,459 - 27,223,845 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl827,197,459 - 27,223,828 (-)Ensemblmm10GRCm38
MGSCv37828,307,931 - 28,313,019 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36828,663,395 - 28,668,483 (-)NCBIMGSCv36mm8
Celera828,687,780 - 28,692,868 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map815.92NCBI
Got1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546313,622,717 - 13,627,241 (-)Ensembl
ChiLan1.0NW_00495546313,622,781 - 13,627,165 (-)NCBIChiLan1.0ChiLan1.0
GOT1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2756,495,094 - 56,505,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1832,212,170 - 32,222,265 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0837,234,593 - 37,241,464 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1834,412,465 - 34,418,343 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl834,412,465 - 34,418,343 (-)EnsemblpanPan2panpan1.1
GOT1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11627,462,364 - 27,495,115 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1627,462,501 - 27,467,492 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1627,971,339 - 28,011,831 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01629,353,371 - 29,393,939 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11627,575,287 - 27,615,812 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01628,152,743 - 28,193,336 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01628,192,089 - 28,232,597 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Got1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494350,067,429 - 50,072,502 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367101,388,743 - 1,393,758 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367101,388,743 - 1,393,791 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOT1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1548,499,964 - 48,507,010 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11548,500,156 - 48,506,992 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GOT1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1835,966,349 - 35,972,471 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl835,966,361 - 35,972,042 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660526,027,559 - 6,033,344 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Got1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247805,679,880 - 5,686,194 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Got1l1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11359,321,265 - 59,326,287 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Got1l1
112 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:89
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000035985
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)166241446475736480Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat

Markers in Region
RH132734  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21664,865,939 - 64,866,126 (+)MAPPERmRatBN7.2
Rnor_6.01669,027,957 - 69,028,143NCBIRnor6.0
Rnor_5.01668,698,072 - 68,698,258UniSTSRnor5.0
RGSC_v3.41669,187,865 - 69,188,051UniSTSRGSC3.4
Celera1662,786,957 - 62,787,143UniSTS
RH 3.4 Map16575.0UniSTS
Cytogenetic Map16q12.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 6 37 97 60 65 40 25 40 6 192 86 10 78 53 76 25 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000035985   ⟹   ENSRNOP00000033792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1671,563,566 - 71,569,015 (+)Ensembl
mRatBN7.2 Ensembl1664,860,704 - 64,866,162 (+)Ensembl
Rnor_6.0 Ensembl1669,022,792 - 69,028,178 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092635   ⟹   ENSRNOP00000075776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1671,563,562 - 71,569,014 (+)Ensembl
mRatBN7.2 Ensembl1664,860,704 - 64,866,162 (+)Ensembl
Rnor_6.0 Ensembl1669,022,784 - 69,028,179 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097132   ⟹   ENSRNOP00000083655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1671,563,555 - 71,569,016 (+)Ensembl
mRatBN7.2 Ensembl1664,860,704 - 64,866,162 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000130627   ⟹   ENSRNOP00000109387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1671,563,534 - 71,570,468 (+)Ensembl
RefSeq Acc Id: NM_001014003   ⟹   NP_001014025
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,562 - 71,569,016 (+)NCBI
mRatBN7.21664,860,704 - 64,866,164 (+)NCBI
Rnor_6.01669,022,784 - 69,028,179 (+)NCBI
Rnor_5.01668,692,819 - 68,698,296 (+)NCBI
RGSC_v3.41669,182,536 - 69,188,087 (+)RGD
Celera1662,782,195 - 62,787,179 (+)RGD
Sequence:
RefSeq Acc Id: XM_006253292   ⟹   XP_006253354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,608 - 71,569,016 (+)NCBI
mRatBN7.21664,860,750 - 64,866,164 (+)NCBI
Rnor_6.01669,022,906 - 69,028,181 (+)NCBI
Rnor_5.01668,692,819 - 68,698,296 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253294   ⟹   XP_006253356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,569,016 (+)NCBI
mRatBN7.21664,860,320 - 64,866,164 (+)NCBI
Rnor_6.01669,022,759 - 69,028,181 (+)NCBI
Rnor_5.01668,692,819 - 68,698,296 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600141   ⟹   XP_017455630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,569,016 (+)NCBI
mRatBN7.21664,860,754 - 64,866,164 (+)NCBI
Rnor_6.01669,022,884 - 69,028,181 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094550   ⟹   XP_038950478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,569,016 (+)NCBI
mRatBN7.21664,860,316 - 64,866,164 (+)NCBI
RefSeq Acc Id: XM_039094552   ⟹   XP_038950480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,569,016 (+)NCBI
mRatBN7.21664,860,754 - 64,866,164 (+)NCBI
RefSeq Acc Id: XM_039094553   ⟹   XP_038950481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,569,016 (+)NCBI
mRatBN7.21664,860,754 - 64,866,164 (+)NCBI
RefSeq Acc Id: XM_063275439   ⟹   XP_063131509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,568,549 (+)NCBI
RefSeq Acc Id: XM_063275440   ⟹   XP_063131510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,568,549 (+)NCBI
RefSeq Acc Id: XR_001841538
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,576,446 (+)NCBI
mRatBN7.21664,860,312 - 64,873,655 (+)NCBI
Rnor_6.01669,022,757 - 69,035,507 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001841540
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,576,446 (+)NCBI
mRatBN7.21664,860,309 - 64,873,654 (+)NCBI
Rnor_6.01669,022,756 - 69,035,506 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005494617
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,576,446 (+)NCBI
mRatBN7.21664,860,309 - 64,873,656 (+)NCBI
RefSeq Acc Id: XR_005494619
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,576,446 (+)NCBI
mRatBN7.21664,860,309 - 64,873,655 (+)NCBI
RefSeq Acc Id: XR_005494620
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,576,446 (+)NCBI
mRatBN7.21664,860,308 - 64,873,655 (+)NCBI
RefSeq Acc Id: XR_005494622
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,568,552 (+)NCBI
mRatBN7.21664,860,317 - 64,865,698 (+)NCBI
RefSeq Acc Id: XR_010058296
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81671,563,612 - 71,576,446 (+)NCBI
RefSeq Acc Id: NP_001014025   ⟸   NM_001014003
- UniProtKB: A0A0U1RVK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253356   ⟸   XM_006253294
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZVR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253354   ⟸   XM_006253292
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017455630   ⟸   XM_017600141
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000075776   ⟸   ENSRNOT00000092635
Ensembl Acc Id: ENSRNOP00000033792   ⟸   ENSRNOT00000035985
RefSeq Acc Id: XP_038950478   ⟸   XM_039094550
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950480   ⟸   XM_039094552
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038950481   ⟸   XM_039094553
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000083655   ⟸   ENSRNOT00000097132
RefSeq Acc Id: XP_063131509   ⟸   XM_063275439
- Peptide Label: isoform X4
- UniProtKB: D4A1Z9 (UniProtKB/TrEMBL),   Q6AY54 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131510   ⟸   XM_063275440
- Peptide Label: isoform X4
- UniProtKB: D4A1Z9 (UniProtKB/TrEMBL),   Q6AY54 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000109387   ⟸   ENSRNOT00000130627
Protein Domains
Aminotransferase class I/classII large

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0U1RVK4-F1-model_v2 AlphaFold A0A0U1RVK4 1-404 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307172 AgrOrtholog
BioCyc Gene G2FUF-11035 BioCyc
BioCyc Pathway ASPARAGINE-DEG1-PWY-1 [L-asparagine degradation III (mammalian)] BioCyc
  ASPARTATE-DEG1-PWY [L-aspartate degradation I] BioCyc
  ASPARTATESYN-PWY [L-aspartate biosynthesis] BioCyc
  MALATE-ASPARTATE-SHUTTLE-PWY [malate/L-aspartate shuttle pathway] BioCyc
  PWY-5886 [3-(4-hydroxyphenyl)pyruvate biosynthesis] BioCyc
  PWY-6318 [L-phenylalanine degradation IV (mammalian, via side chain)] BioCyc
  TYRFUMCAT-PWY [L-tyrosine degradation I] BioCyc
BioCyc Pathway Image ASPARAGINE-DEG1-PWY-1 BioCyc
  ASPARTATE-DEG1-PWY BioCyc
  ASPARTATESYN-PWY BioCyc
  MALATE-ASPARTATE-SHUTTLE-PWY BioCyc
  PWY-5886 BioCyc
  PWY-6318 BioCyc
  TYRFUMCAT-PWY BioCyc
Ensembl Genes ENSRNOG00000038473 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035985 ENTREZGENE
  ENSRNOT00000035985.8 UniProtKB/TrEMBL
  ENSRNOT00000092635 ENTREZGENE
  ENSRNOT00000092635.3 UniProtKB/TrEMBL
  ENSRNOT00000097132 ENTREZGENE
  ENSRNOT00000097132.2 UniProtKB/TrEMBL
  ENSRNOT00000130627 ENTREZGENE
  ENSRNOT00000130627.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7131193 IMAGE-MGC_LOAD
InterPro Aminotransferase_I/II UniProtKB/TrEMBL
  Asp_trans UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major_dom UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major_sub2 UniProtKB/TrEMBL
KEGG Report rno:306540 UniProtKB/TrEMBL
MGC_CLONE MGC:94235 IMAGE-MGC_LOAD
NCBI Gene 306540 ENTREZGENE
PANTHER Asp_trans UniProtKB/TrEMBL
  ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC 2-RELATED UniProtKB/TrEMBL
Pfam Aminotran_1_2 UniProtKB/TrEMBL
PhenoGen Got1l1 PhenoGen
PRINTS TRANSAMINASE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000038473 RatGTEx
Superfamily-SCOP PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
UniProt A0A0U1RVK4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVR3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LWJ8_RAT UniProtKB/TrEMBL
  D4A1Z9 ENTREZGENE
  Q6AY54 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D4A1Z9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Got1l1  glutamic-oxaloacetic transaminase 1-like 1  RGD1307172  similar to hypothetical protein MGC33309  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1307172  similar to hypothetical protein MGC33309  RGD1307172_predicted  similar to hypothetical protein MGC33309 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307172_predicted  similar to hypothetical protein MGC33309 (predicted)  LOC306540_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC306540_predicted  similar to hypothetical protein MGC33309 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL