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Gene: Thsd7b (thrombospondin type 1 domain containing 7B) Rattus norvegicus

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Symbol:

Thsd7b

Name:

thrombospondin type 1 domain containing 7B

RGD ID:

1306938

Description:

Predicted to be involved in actin cytoskeleton organization. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human THSD7B (thrombospondin type 1 domain containing 7B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC289007; RGD1306938; similar to KIAA1679 protein; thrombospondin type-1 domain-containing protein 7B; thrombospondin, type I, domain containing 7B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	43,320,895 - 44,219,546 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	43,320,891 - 44,218,785 (+)	Ensembl				GRCr8
mRatBN7.2	13	40,768,567 - 41,667,262 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	40,768,570 - 41,666,501 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	43,498,303 - 44,263,292 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	44,786,463 - 45,551,378 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	42,032,287 - 42,805,969 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	13	42,691,504 - 43,587,430 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	13	42,912,797 - 43,808,753 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	13	42,889,228 - 43,785,202 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	13	42,832,187 - 43,728,105 (+)	NCBI		F344_StmMcwi
Rnor_6.0	13	46,026,943 - 46,931,619 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	46,169,963 - 46,930,858 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	51,235,509 - 51,905,879 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	13	51,943,558 - 51,990,395 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	42,331,428 - 43,117,833 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	41,268,004 - 42,021,350 (+)	NCBI		Celera
RGSC_v3.1	13	42,345,470 - 43,131,535 (+)	NCBI
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ehlers-Danlos syndrome classic type 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

Butylbenzyl phthalate (ISO)

caffeine (ISO)

carbamazepine (ISO)

chlordecone (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

dorsomorphin (ISO)

folic acid (ISO)

fulvestrant (ISO)

genistein (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

paracetamol (ISO)

SB 431542 (ISO)

Soman (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IBA)

Cellular Component

membrane (IEA)

plasma membrane (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Thsd7b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	43,320,895 - 44,219,546 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	43,320,891 - 44,218,785 (+)	Ensembl				GRCr8
mRatBN7.2	13	40,768,567 - 41,667,262 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	40,768,570 - 41,666,501 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	43,498,303 - 44,263,292 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	44,786,463 - 45,551,378 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	42,032,287 - 42,805,969 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	13	42,691,504 - 43,587,430 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	13	42,912,797 - 43,808,753 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	13	42,889,228 - 43,785,202 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	13	42,832,187 - 43,728,105 (+)	NCBI		F344_StmMcwi
Rnor_6.0	13	46,026,943 - 46,931,619 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	46,169,963 - 46,930,858 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	51,235,509 - 51,905,879 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	13	51,943,558 - 51,990,395 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	42,331,428 - 43,117,833 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	41,268,004 - 42,021,350 (+)	NCBI		Celera
RGSC_v3.1	13	42,345,470 - 43,131,535 (+)	NCBI
Cytogenetic Map	13	q13	NCBI

THSD7B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	136,765,545 - 137,677,718 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	136,765,545 - 137,677,718 (+)	Ensembl			hg38	GRCh38
GRCh37	2	137,523,115 - 138,435,288 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	137,464,932 - 138,151,757 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	131,462,164 - 132,148,761 (+)	NCBI		Celera
Cytogenetic Map	2	q22.1	NCBI
HuRef	2	129,738,907 - 130,425,733 (+)	NCBI		HuRef
CHM1_1	2	137,753,052 - 138,439,830 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	137,211,511 - 138,123,604 (+)	NCBI		T2T-CHM13v2.0

Thsd7b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	129,201,010 - 130,147,015 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	129,201,039 - 130,147,015 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	129,273,190 - 130,219,278 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	129,273,302 - 130,219,278 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	131,169,881 - 132,115,855 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	131,101,020 - 132,046,824 (+)	NCBI		MGSCv36	mm8
Celera	1	131,901,059 - 132,847,574 (+)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	56.55	NCBI

Thsd7b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	4,169,311 - 4,833,850 (+)	Ensembl
ChiLan1.0	NW_004955440	4,054,497 - 4,834,962 (+)	NCBI	ChiLan1.0	ChiLan1.0

THSD7B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	37,253,972 - 38,168,324 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	37,268,942 - 38,183,293 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	22,185,005 - 23,099,445 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	140,831,777 - 141,744,221 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	140,948,485 - 141,744,341 (+)	Ensembl			panPan2	panpan1.1

THSD7B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	39,589,184 - 40,318,314 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	39,589,179 - 40,317,206 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	39,837,099 - 40,566,206 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	41,031,741 - 41,756,082 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	40,907,729 - 41,756,082 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	39,689,013 - 40,424,177 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	39,842,736 - 40,565,415 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	41,073,143 - 41,798,343 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Thsd7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	102,386,739 - 103,196,686 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	38,419,415 - 39,121,981 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	38,421,034 - 39,231,110 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

THSD7B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	14,088,999 - 15,046,042 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	14,088,995 - 15,610,635 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	16,503,625 - 17,149,573 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

THSD7B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	20,967,111 - 21,863,386 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666061	538,052 - 1,434,919 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Thsd7b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	36,426,431 - 37,262,668 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624732	36,263,704 - 37,263,010 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Thsd7b
5192 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	55
Count of miRNA genes:	39
Interacting mature miRNAs:	49
Transcripts:	ENSRNOT00000005212
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2303030	Bp327	Blood pressure QTL 327			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	43736554	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	43736327	47969993	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

D13Rat22

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	40,949,793 - 40,949,915 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	46,214,730 - 46,214,851	NCBI	Rnor6.0
Rnor_5.0	13	51,279,941 - 51,280,062	UniSTS	Rnor5.0
RGSC_v3.4	13	42,377,193 - 42,377,501	RGD	RGSC3.4
RGSC_v3.4	13	42,377,290 - 42,377,411	UniSTS	RGSC3.4
Celera	13	41,311,751 - 41,311,872	UniSTS
RGSC_v3.1	13	42,391,333 - 42,391,454	RGD
RH 3.4 Map	13	101.5	RGD
RH 3.4 Map	13	101.5	UniSTS
RH 2.0 Map	13	280.1	RGD
SHRSP x BN Map	13	10.1699	RGD
Cytogenetic Map	13	q12-q13	UniSTS

D13Rat88

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	43,736,327 - 43,736,554 (+)	Marker Load Pipeline
mRatBN7.2	13	41,184,022 - 41,184,251 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	46,444,570 - 46,444,796	NCBI	Rnor6.0
Rnor_5.0	13	51,509,286 - 51,509,512	UniSTS	Rnor5.0
RGSC_v3.4	13	42,627,610 - 42,627,837	RGD	RGSC3.4
RGSC_v3.4	13	42,627,611 - 42,627,837	UniSTS	RGSC3.4
Celera	13	41,544,260 - 41,544,488	UniSTS
RGSC_v3.1	13	42,641,654 - 42,641,880	RGD
RH 3.4 Map	13	107.8	UniSTS
RH 3.4 Map	13	107.8	RGD
RH 2.0 Map	13	290.4	RGD
SHRSP x BN Map	13	10.2099	RGD
FHH x ACI Map	13	12.72	RGD
Cytogenetic Map	13	q12-q13	UniSTS

MHAa78b9.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	41,241,671 - 41,241,839 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	46,502,216 - 46,502,383	NCBI	Rnor6.0
Rnor_5.0	13	51,566,932 - 51,567,099	UniSTS	Rnor5.0
RGSC_v3.4	13	42,686,114 - 42,686,281	UniSTS	RGSC3.4
Celera	13	41,601,914 - 41,602,081	UniSTS
Cytogenetic Map	13	q12-q13	UniSTS

RH144293

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	40,769,247 - 40,769,418 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	46,027,645 - 46,027,815	NCBI	Rnor6.0
Rnor_5.0	13	51,094,794 - 51,094,964	UniSTS	Rnor5.0
RGSC_v3.4	13	42,193,986 - 42,194,156	UniSTS	RGSC3.4
Celera	13	41,131,197 - 41,131,367	UniSTS
RH 3.4 Map	6	839.19	UniSTS
Cytogenetic Map	13	q12-q13	UniSTS

AU048182

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	41,033,254 - 41,033,418 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	46,298,636 - 46,298,799	NCBI	Rnor6.0
Rnor_5.0	13	51,363,200 - 51,363,363	UniSTS	Rnor5.0
Celera	13	41,394,206 - 41,394,368	UniSTS
Cytogenetic Map	13	q12-q13	UniSTS

AU047298

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	41,397,341 - 41,397,592 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	46,659,422 - 46,659,674	NCBI	Rnor6.0
Rnor_5.0	13	51,722,159 - 51,722,411	UniSTS	Rnor5.0
RGSC_v3.4	13	42,842,379 - 42,842,629	UniSTS	RGSC3.4
Celera	13	41,755,629 - 41,755,879	UniSTS
Cytogenetic Map	13	q12-q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
7	5	63	144	54	53	22	81	22	6	257	167	3	122	56	85	31	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB294577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB294578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005212 ⟹ ENSRNOP00000005212

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	43,320,891 - 44,218,785 (+)	Ensembl
mRatBN7.2 Ensembl	13	40,768,570 - 41,666,501 (+)	Ensembl
Rnor_6.0 Ensembl	13	46,169,963 - 46,930,858 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115425 ⟹ ENSRNOP00000081745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	43,320,946 - 44,218,785 (+)	Ensembl
mRatBN7.2 Ensembl	13	40,768,570 - 41,666,501 (+)	Ensembl

RefSeq Acc Id:

NM_001191669 ⟹ NP_001178598

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	43,458,345 - 44,218,785 (+)	NCBI
mRatBN7.2	13	40,906,028 - 41,666,501 (+)	NCBI
Dahl_SR_JrHsd	13	42,691,504 - 43,587,430 (+)	NCBI
Lyon_Normotensive	13	42,912,797 - 43,808,753 (+)	NCBI
Lyon_Hypertensive	13	42,889,228 - 43,785,202 (+)	NCBI
F344_StmMcwi	13	42,832,187 - 43,728,105 (+)	NCBI
Rnor_6.0	13	46,169,963 - 46,930,858 (+)	NCBI
Rnor_5.0	13	51,235,509 - 51,905,879 (+)	NCBI
Rnor_5.0	13	51,943,558 - 51,990,395 (+)	NCBI
Celera	13	41,268,004 - 42,021,350 (+)	NCBI

Sequence:

show sequence

ATGTTTCCAAGGAGTGATCTGGCCGTCACTCACTGGGTTTCGAGGAGCATGAGGAAGGTCTTTC
TAGTGCTTTCTCTCCTGCTGTCCCAAGCAGCTCATTTGGAAGGCAGGAAGGACAATCAGTTCAT
CTGGAAAACAGGTCCCTGGGGAAGGTGTGCAGGTGACTGCGGACCAGGCGGAACCCAGAGTCGC
GCTGTGTGGTGCTTTCACATAGAAGGGTGGACGAGTCCCATGGCGAACTGTGATGAGAGCAGCC
GACCTCCGAAGGAAAGGAGCTGTTTCCGCGTGTGTGACTGGCACAGTGACCTCTTCCAGTGGGA
GGTTTCAGACTGGCACCGCTGCCTGCTGGTTCCTGGGGCCCAAGGAGAGCCCAGGCCTCGGGCT
GTGGAGTGTGTGACTGCGCAGCACGGTCTACAGCACCGGACAGTGCGCTGTCTTCAGAAGCTCA
ACAGAACCATGGTGGCCAGTGAGATCTGTGAACACTTTGTTCCTCAGCCTCCCACAGAGCAAGC
CTGCCTCATCCCTTGCCCCAGGGACTGTGTTGTATCTGAGTTCTCCCCGTGGTCCACCTGCCCT
GAAGGGTGTGGGAAGAAGCTGCAGCATAGAACTCGTGTGGCCATCGCACCCCCTCTGTATGGAG
GTCTGCAGTGCCCAAATCTCACTGAGTCCAGAGCCTGTGAGGCTCCAATTTCCTGTCCTCTTGG
GAAAGAGGAATATTCCTTCAGCCTTAAGGTGGGACCATGGAGCAAGTGTAGACTCCCTCACCTT
AAGGAAGCCGAGCTCGGCGGAAGAAATGTCCAGGATTTTAGCTCTGATTCAAACGAGCAAGTCA
CCCTAACACATCAGAGTTACAAAGCACAGCACCACTCCCAGCCTGGGGCTATAGAGATAGGTTT
CCAAACCAGGCAGGTGTGGTGCACCAGAAGTGATGGAAGAAACGCCCTGTTAAGCCTTTGTATG
CGAGATTCCTTCCCACTTACTGTCCAGCCTTGTGTGATGCCAAAGGACTGTGAGACTTCTGAAT
GGTCTCCGTGGAGCCCCTGCTCCAAGACCTGCCGTTCTGGGACTCTATCACCTGGAGTAAGGAG
CAGGAGCCGGAACGTGAAGCATATTGCAATTGGAGGTGGCCAGGAATGCCCAGAACTACTTGAG
AAAGAGACCTGCATTGCTGAAGGGGAATTTCTGCAACCATGTCCCAGGTATTCCTGGAGAACCT
CCGAATGGAAGGAATGTCAAGTCTCTCTTCTTCTGGAGCAACAGGACCCACTTTGGCATAAGAC
AGGACCAATCTGCGGTGGTGGGATCCAGACCCGGGAGGTGTACTGTGCCCAGAGCTTCCCAGCA
ACCATCACATCAAGAACCAAGGAAGTCTCTAGGCCTGTGGAAAGTACCTTATGCTTGGGACCTG
CCCCCTCAGCCTCCCAGCTCTGCAATGTCCCTTGCTCGACGGACTGCATAGTATCTTCCTGGTC
AGCCTGGGGCCCCTGTGTTTATGAGAACTGCCATGATCCTCAGGGGAAGAAAGGCTTTAGAATG
AGACAGCGCCATGTGCTCATGGAGTCTACAGGGCCCGTGGGGCACTGCCCTCATCTGGCAGAGT
CTGTACCTTGTGAGGATCCAATGTGCTATCGGTGGCTTGCCTCAGAAGGGATCTGCATCCCTGA
TCACGGAAAATGTGGCCTGGGACATCGTATCCTCAAGGCTGTCTGTCAGAATGAGCGAGGAGAA
GAAGTATCAGGGGGTCTCTGTCCAGTGCCTCCTCCTCCTGAAAGGATGGCTTGTGAAATCCCCT
GCCGAATGGACTGTGTAGTGAGTGAGTGGACAGTATGGTCATCCTGCTCCCAGTCCTGTTCAAA
TAAAAATTCAGATGGGAAACAAACCAGATCACGTTCTATCGTAGCTTTGGCTGGAGAAGGTGGA
AAGCCCTGCCCTGGTAGTCAGGAACTCCAAGAGTACCGTCTATGCAATGATCACTCCTGTGCAC
AGCTCTACTGGGAGACATCTGCTTGGGGATCCTGCTCTGAAAATACTCTTGTGACTGCCCTCAA
TATGTCCATTGGCTGGAATGGAGAAGCAACATGTGGGGTTGGCATTCAGACACGGAAGGTCTTC
TGTATCAAGAGTCATGTGGGACAAGTGATGACCAAAAGATGTCCAGAGTCTACACGGCCAGAAA
CTGTGAGACCTTGTTTCCTCCCGTGCAAGAAAGACTGCCTTGTCACTGCTTTCAGTGAGTGGAG
ACCATGCCCATGGCCCTGCCAGCCAGGAAATACCACAATAAAACAGTCTCGATACAGGATTATC
ATTCAGGAAGCAGCCAATGGAGGTCAAGAGTGCCCAGATACCTTATTTGAAGAAAGAGAGTGTG
AAGATATCTCATTGTGCCCTACATACCGGTGGAAGCCACAGAAATGGAGCCCTTGTATCCTGGT
TCCAGAGTCTATCAGGCAGGGGAGAACAGGCACCAGTGAGGCATGTGGGAAGGGGCTGCAGACA
AGAGACGTCTCATGCATCTCTGATGATAACCAGTCTGCAGAAATGACAGAATGCCTCAGGCAGA
TGAATGGCATGCCACCCCTCGTGCAGGAATGCACCATTGCCTGCCGGGAAGACTGCACCTTCAC
CCCTTGGTCTAAGTTCACTCCCTGCTCCAAGAACTGTGAGGCAACCCAGATCAGGAGGCGGCAG
CTCACAGGGAAAAGCAGGAAGAAAGAGCGGTGCCAGGATGCGTCCCTGTACCCTCTGGTGGAAT
TGGAACCATGCCCCTGTGATGCATTCATGTCTCATCCTTATGGAAACTGGTCAGCTTGCATTCT
GCCAGAAGGCAAAAGGGATCCTCAGCAAGGAGGACTGTGGGTACAAGGAGACGACAAAGAATGT
GGAGAAGGCGTACGCTTTCGAGCAATAGCATGCACTGATATAAATGGAAGACCTGTTGACCCCT
CCTTCTGCAACAGCTCTGGTTATATCCAAGAAGCATGTGTCATCCCTTGCCCATTTGATTGCAA
ATTAAGTGACTGGTCCAGCTGGGGTTCTTGCAGCTCATCTTGTGGGATTGGAGTGAGGATTCGA
TCGAAATGGCTAAAAGAAAAGCCTTACAGTGGAGGTCGGCCATGTCCCAAACTGGATCTCAAGA
ACCAGGTTCACGAAGCAGTCCCATGTTACAGTGAATGCGATCAGTATTCCTGGGTTGTAGAACA
CTGGTCTCCATGCAAGATCAACAATGAGCTGAGATCCCCACGCTGTGGAAGAGGAACACAATCC
AGAAGAATCAGGTGTGTGAGTACTGCTGACAGAGAAGGAGGGGCAGTGGACAGGAGCCTGTGCA
ACCAGGATGATGCTCCCCCAGAGACCCAGGCCTGTTCTCTTCTGTGTCCTAGTGAGTGCGTCAT
GTCTGAGTGGGGAACATGGAGCAAATGCCCACAGTCATGTGACCCCCATGCAACACAGAGAAGA
ACTCGGCATCTGCTGAGGCCCTCGCTGAACTCAAGAACTTGTGGGGAAGACTCGCAGGTGCGGC
CCTGTCTGCTCAATGAAAACTGTTTCCAGTTCCAGTACAATCTGACAGAGTGGAGCACATGCCA
ACTGAGTGAAAACATTTCCTGTGGCCAGGGTGTGAGGACCCGCCTGCTGAGCTGTGTGCGCAGT
GATGGCAAGCCTGTCAGCATGGACCACTGTGAGGAGCGTAATCTGGACAAACCCCAGAGGATGA
GTATTCCCTGTCTGGTGGAATGTGTGGTCAACTGTCAGCTCTCAGGATGGACGACATGGACAGA
GTGTTCCCAAACCTGTGGTCAAGGAGGTCGAATGAGCCGGACTCGATTTATCATTATGCCAACC
CAAGGAGAAGGCCGACGATGCCCCACAGAACTCACCCAGCAGAAACCCTGCCCAGTGACACCCT
GCTATAGCTGGGTCCTTGGCAACTGGTCTGCATGTAAATTGGAGGGTGGAGATTGTGGGGAAGG
AGTCCAGGTGCGCAGCTTTTCCTGTGTCGTCCACAATGGCTCAATATCCCACACAGCTGTCCAA
GTGGAAGACACCCTGTGTGGAGAAGTACCCTTCCAAGAAGGACTCCAGAAGCAGCTGTGCTCTG
TGCCTTGCCCAGGAGACTGCCACATTACCCCATGGTCGGAGTGGAGCAAATGTGAGCTAACCTG
CATTGACGGAAGAAGCTTCGAGACCACGGGCCGCCAATCTAGGTCAAGGACATTCATAATCCAG
TCTTTCGAGAATCAAGATAGCTGCCCCCAACAGGTTCTAGAAACACGACCATGCGCAGGTGGCA
AATGTTATCACTACACATGGAAAGCAAGTCTTTGGAACAATAACGAACGGACTGTGTGGTGCCA
GCGATCAGACGGCCTTAATGTCACAGGTGGCTGTTCCCCTCAGGCACGCCCTGCTGCTATTCGG
CAATGCATTCCAGCTTGCAAGAAACCTTTCTCCTACTGCACACAGGGTGGAGTTTGTGGCTGCG
AGCAGGGGTACACAGAGATAATGAGATCAAGTGGCTTCCTGGATTACTGCATGAAGGTACCCGG
CTCAGAGGATAAAAAAGCTGATGTGAAAACCTTCTCTGGGAAAAACCGACCTGTGAACTCCAAG
ATTCATGATATTTTTAAAGGATGGTCTCTTCAACCTCTTGACCCAGACGGCCGAGTAAAAATTT
GGGTTTATGGCGTTTCCGGTGGCAGTTTTCTTATCATGATCTTCCTAGTATTTGCTTCCTATCT
TGTTTGCAAGAAGCCAAAACCACATCAAAGCACACCTCGCCATCAGAAGCCACTGACCTTGGCC
TACGATGGAGACTTGGACATGTAACTTGAAAAAAGGAATCCAAATGTAGACATCAACTGCTGCC
TTAAATGCTTTCTCTTTTGTAGCTCTCAGACTTCTCAGTTCTTTGAGGAATCTCACGATGTGAT
ATCTTGGGCAGAACACAAATACTACAAAAGGAATAGTGCCCCAACTTCATTGGGACATGGAGTC
AAGGATTACTGGGTCTGCCATTTTGTTTTCAAATTGTTTGTGGGTGTGTTTTGCTTTTTTTGGT
TTTCCCAAGAGGCCTGAAAACCTTTCTCTTCCTGTTTGAAAATGAGAGGAAGAGAACCTGAAGG
GTTTCACACAGACTTGAGTGAACTTGATCCTCAGAGGCATTCTGA

hide sequence

RefSeq Acc Id:

XM_039090425 ⟹ XP_038946353

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	43,320,895 - 44,219,546 (+)	NCBI
mRatBN7.2	13	40,768,567 - 41,667,262 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178598	(Get FASTA)	NCBI Sequence Viewer
	XP_038946353	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAF94237	(Get FASTA)	NCBI Sequence Viewer
	BAF94238	(Get FASTA)	NCBI Sequence Viewer
	BAF94239	(Get FASTA)	NCBI Sequence Viewer
	BAF94257	(Get FASTA)	NCBI Sequence Viewer
	BAF94258	(Get FASTA)	NCBI Sequence Viewer
	BAF94259	(Get FASTA)	NCBI Sequence Viewer
	EDM09870	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005212.6
	ENSRNOP00000081745
	ENSRNOP00000081745.2

RefSeq Acc Id:	NP_001178598 ⟸ NM_001191669
- Peptide Label:	precursor
- UniProtKB:	F1LPD7 (UniProtKB/TrEMBL), A0A8I5ZSV0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFPRSDLAVTHWVSRSMRKVFLVLSLLLSQAAHLEGRKDNQFIWKTGPWGRCAGDCGPGGTQSR AVWCFHIEGWTSPMANCDESSRPPKERSCFRVCDWHSDLFQWEVSDWHRCLLVPGAQGEPRPRA VECVTAQHGLQHRTVRCLQKLNRTMVASEICEHFVPQPPTEQACLIPCPRDCVVSEFSPWSTCP EGCGKKLQHRTRVAIAPPLYGGLQCPNLTESRACEAPISCPLGKEEYSFSLKVGPWSKCRLPHL KEAELGGRNVQDFSSDSNEQVTLTHQSYKAQHHSQPGAIEIGFQTRQVWCTRSDGRNALLSLCM RDSFPLTVQPCVMPKDCETSEWSPWSPCSKTCRSGTLSPGVRSRSRNVKHIAIGGGQECPELLE KETCIAEGEFLQPCPRYSWRTSEWKECQVSLLLEQQDPLWHKTGPICGGGIQTREVYCAQSFPA TITSRTKEVSRPVESTLCLGPAPSASQLCNVPCSTDCIVSSWSAWGPCVYENCHDPQGKKGFRM RQRHVLMESTGPVGHCPHLAESVPCEDPMCYRWLASEGICIPDHGKCGLGHRILKAVCQNERGE EVSGGLCPVPPPPERMACEIPCRMDCVVSEWTVWSSCSQSCSNKNSDGKQTRSRSIVALAGEGG KPCPGSQELQEYRLCNDHSCAQLYWETSAWGSCSENTLVTALNMSIGWNGEATCGVGIQTRKVF CIKSHVGQVMTKRCPESTRPETVRPCFLPCKKDCLVTAFSEWRPCPWPCQPGNTTIKQSRYRII IQEAANGGQECPDTLFEERECEDISLCPTYRWKPQKWSPCILVPESIRQGRTGTSEACGKGLQT RDVSCISDDNQSAEMTECLRQMNGMPPLVQECTIACREDCTFTPWSKFTPCSKNCEATQIRRRQ LTGKSRKKERCQDASLYPLVELEPCPCDAFMSHPYGNWSACILPEGKRDPQQGGLWVQGDDKEC GEGVRFRAIACTDINGRPVDPSFCNSSGYIQEACVIPCPFDCKLSDWSSWGSCSSSCGIGVRIR SKWLKEKPYSGGRPCPKLDLKNQVHEAVPCYSECDQYSWVVEHWSPCKINNELRSPRCGRGTQS RRIRCVSTADREGGAVDRSLCNQDDAPPETQACSLLCPSECVMSEWGTWSKCPQSCDPHATQRR TRHLLRPSLNSRTCGEDSQVRPCLLNENCFQFQYNLTEWSTCQLSENISCGQGVRTRLLSCVRS DGKPVSMDHCEERNLDKPQRMSIPCLVECVVNCQLSGWTTWTECSQTCGQGGRMSRTRFIIMPT QGEGRRCPTELTQQKPCPVTPCYSWVLGNWSACKLEGGDCGEGVQVRSFSCVVHNGSISHTAVQ VEDTLCGEVPFQEGLQKQLCSVPCPGDCHITPWSEWSKCELTCIDGRSFETTGRQSRSRTFIIQ SFENQDSCPQQVLETRPCAGGKCYHYTWKASLWNNNERTVWCQRSDGLNVTGGCSPQARPAAIR QCIPACKKPFSYCTQGGVCGCEQGYTEIMRSSGFLDYCMKVPGSEDKKADVKTFSGKNRPVNSK IHDIFKGWSLQPLDPDGRVKIWVYGVSGGSFLIMIFLVFASYLVCKKPKPHQSTPRHQKPLTLA YDGDLDM hide sequence

Ensembl Acc Id:

ENSRNOP00000005212 ⟸ ENSRNOT00000005212

RefSeq Acc Id:	XP_038946353 ⟸ XM_039090425
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000081745 ⟸ ENSRNOT00000115425

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LPD7-F1-model_v2	AlphaFold	F1LPD7	1-1607	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306938	AgrOrtholog
BioCyc Gene	G2FUF-18386	BioCyc
Ensembl Genes	ENSRNOG00000003878	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005212.7	UniProtKB/TrEMBL
	ENSRNOT00000115425	ENTREZGENE
	ENSRNOT00000115425.2	UniProtKB/TrEMBL
Gene3D-CATH	2.20.100.10	UniProtKB/TrEMBL
InterPro	Spondin/Thrombospondin_T1	UniProtKB/TrEMBL
	Thrombospondin_1_rpt	UniProtKB/TrEMBL
	TSP1_rpt_sf	UniProtKB/TrEMBL
	TSP1_spondin_dom	UniProtKB/TrEMBL
	TSP1_TSH7A-B_C	UniProtKB/TrEMBL
KEGG Report	rno:289007	UniProtKB/TrEMBL
NCBI Gene	289007	ENTREZGENE
PANTHER	SPONDIN	UniProtKB/TrEMBL
	SPONDIN-2	UniProtKB/TrEMBL
Pfam	TSP1_ADAMTS	UniProtKB/TrEMBL
	TSP1_spondin	UniProtKB/TrEMBL
	TSP1_TSH7A-B_C	UniProtKB/TrEMBL
	TSP_1	UniProtKB/TrEMBL
PhenoGen	Thsd7b	PhenoGen
PROSITE	TSP1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003878	RatGTEx
SMART	TSP1	UniProtKB/TrEMBL
Superfamily-SCOP	TSP1	UniProtKB/TrEMBL
UniProt	A0A8I5ZSV0	ENTREZGENE, UniProtKB/TrEMBL
	F1LPD7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-20	Thsd7b	thrombospondin type 1 domain containing 7B	Thsd7b	thrombospondin, type I, domain containing 7B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Thsd7b	thrombospondin, type I, domain containing 7B	RGD1306938_predicted	similar to KIAA1679 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1306938_predicted	similar to KIAA1679 protein (predicted)	LOC289007_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC289007_predicted	similar to KIAA1679 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar