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Gene: Jade1 (jade family PHD finger 1) Rattus norvegicus

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Symbol:

Jade1

Name:

jade family PHD finger 1

RGD ID:

1306920

Description:

Predicted to enable transcription coactivator activity. Predicted to contribute to histone acetyltransferase activity. Predicted to be involved in several processes, including negative regulation of canonical Wnt signaling pathway; regulation of cell growth; and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of or within negative regulation of G1/S transition of mitotic cell cycle. Predicted to be located in several cellular components, including ciliary basal body; cytosol; and nuclear speck. Predicted to be part of histone acetyltransferase complex. Orthologous to human JADE1 (jade family PHD finger 1); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC310352; PHD finger protein 17; Phf17; protein Jade-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	JADE1 (jade family PHD finger 1)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Jade1 (jade family PHD finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Jade1 (jade family PHD finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	JADE1 (jade family PHD finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	JADE1 (jade family PHD finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Jade1 (jade family PHD finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	JADE1 (jade family PHD finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	JADE1 (jade family PHD finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Jade1 (jade family PHD finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Jade1 (jade family PHD finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	JADE1 (jade family PHD finger 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Jade1 (jade family PHD finger 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	jade1 (jade family PHD finger 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NTO1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder)
Caenorhabditis elegans (roundworm):	phf-15	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	phf-15	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	rno	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	rno	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	jade1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	jade1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	126,471,124 - 126,524,252 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	126,471,124 - 126,524,252 (+)	Ensembl				GRCr8
mRatBN7.2	2	124,543,233 - 124,596,361 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	124,543,286 - 124,596,354 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	131,113,743 - 131,166,808 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	129,226,166 - 129,279,231 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	123,855,336 - 123,908,403 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	128,461,147 - 128,514,298 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	128,461,224 - 128,514,291 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	148,061,324 - 148,114,469 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	128,499,983 - 128,553,050 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	119,445,989 - 119,498,978 (+)	NCBI		Celera
RGSC_v3.1	2	128,444,210 - 128,502,196 (+)	NCBI
Cytogenetic Map	2	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methoxyethanol (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bromuconazole (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (EXP,ISO)

dorsomorphin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

methapyrilene (EXP)

methimazole (EXP)

methylmercury chloride (ISO)

microcystin-LR (ISO)

N-methyl-4-phenylpyridinium (ISO)

nefazodone (EXP)

nickel atom (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

parathion (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

phenytoin (ISO)

pirinixic acid (ISO)

progesterone (ISO)

resveratrol (EXP,ISO)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

sulfadimethoxine (EXP)

testosterone (EXP,ISO)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

theophylline (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

chromatin remodeling (IBA,IEA)

DNA-templated transcription (IEA)

negative regulation of canonical Wnt signaling pathway (ISO)

negative regulation of G1/S transition of mitotic cell cycle (ISO)

positive regulation of DNA-templated transcription (IEA)

regulation of cell cycle (ISO)

regulation of cell growth (ISO)

regulation of DNA biosynthetic process (ISO)

regulation of DNA replication (ISO)

regulation of DNA-templated transcription (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

chromosome (IEA)

ciliary basal body (ISO)

cytoplasm (ISO)

cytosol (ISO)

histone acetyltransferase complex (IBA,ISO)

nuclear speck (ISO)

nucleoplasm (ISO)

nucleus (IBA,IEA,ISO)

plasma membrane (ISO)

Molecular Function

histone H3K14 acetyltransferase activity (ISO)

histone H4K12 acetyltransferase activity (ISO)

histone H4K16 acetyltransferase activity (ISO)

histone H4K5 acetyltransferase activity (ISO)

histone H4K8 acetyltransferase activity (ISO)

histone reader activity (IBA)

metal ion binding (IEA)

protein binding (ISO)

transcription coactivator activity (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12169691	PMID:16387653	PMID:22654112	PMID:23001567	PMID:24739512	PMID:30361391

Genomics

Comparative Map Data

Jade1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	126,471,124 - 126,524,252 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	126,471,124 - 126,524,252 (+)	Ensembl				GRCr8
mRatBN7.2	2	124,543,233 - 124,596,361 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	124,543,286 - 124,596,354 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	131,113,743 - 131,166,808 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	129,226,166 - 129,279,231 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	123,855,336 - 123,908,403 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	128,461,147 - 128,514,298 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	128,461,224 - 128,514,291 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	148,061,324 - 148,114,469 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	128,499,983 - 128,553,050 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	119,445,989 - 119,498,978 (+)	NCBI		Celera
RGSC_v3.1	2	128,444,210 - 128,502,196 (+)	NCBI
Cytogenetic Map	2	q26	NCBI

JADE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	128,809,700 - 128,875,224 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	128,809,576 - 128,875,224 (+)	Ensembl			hg38	GRCh38
GRCh37	4	129,730,855 - 129,796,379 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	129,950,229 - 130,015,829 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	4	127,112,780 - 127,178,419 (+)	NCBI		Celera
Cytogenetic Map	4	q28.2	NCBI
HuRef	4	125,461,152 - 125,526,511 (+)	NCBI		HuRef
CHM1_1	4	129,707,281 - 129,772,873 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	132,113,886 - 132,179,423 (+)	NCBI		T2T-CHM13v2.0

Jade1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	41,510,169 - 41,571,299 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	41,510,166 - 41,571,299 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	41,555,734 - 41,616,864 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	41,555,731 - 41,616,864 (+)	Ensembl			mm10	GRCm38
MGSCv37	3	41,359,656 - 41,420,786 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	41,677,744 - 41,713,406 (+)	NCBI		MGSCv36	mm8
Celera	3	41,278,427 - 41,339,323 (+)	NCBI		Celera
Cytogenetic Map	3	B	NCBI
cM Map	3	19.88	NCBI

Jade1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955428	12,765,550 - 12,835,507 (-)	Ensembl
ChiLan1.0	NW_004955428	12,762,629 - 12,835,310 (-)	NCBI	ChiLan1.0	ChiLan1.0

JADE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	126,569,673 - 126,635,286 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	126,836,180 - 126,901,814 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	120,969,668 - 121,035,282 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	132,271,559 - 132,336,620 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	132,272,642 - 132,336,620 (+)	Ensembl			panPan2	panpan1.1

JADE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	12,187,345 - 12,250,343 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	12,189,281 - 12,250,349 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	12,375,413 - 12,438,357 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	12,274,017 - 12,337,297 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	12,275,915 - 12,337,306 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	12,246,286 - 12,309,249 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	12,535,170 - 12,598,287 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	12,995,766 - 13,058,843 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Jade1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	60,861,830 - 60,914,355 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936642	2,157,543 - 2,207,146 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936642	2,154,662 - 2,207,186 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JADE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	96,209,079 - 96,270,889 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	96,208,217 - 96,564,132 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	102,990,692 - 103,053,784 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JADE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	75,926,199 - 75,993,381 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	75,926,616 - 75,995,327 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	55,088,979 - 55,156,044 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Jade1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624777	9,666,762 - 9,723,381 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624777	9,664,111 - 9,726,266 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Jade1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	112,341,264 - 112,395,211 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Jade1
224 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	767
Count of miRNA genes:	306
Interacting mature miRNAs:	412
Transcripts:	ENSRNOT00000018872
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	105628029	150628029	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1598865	Bp296	Blood pressure QTL 296	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	82947902	127947902	Rat
1578772	Stresp14	Stress response QTL 14	5	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	2	84056790	132859658	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	124103798	154505346	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
2317886	Alcrsp23	Alcohol response QTL 23	2.4	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	95142371	140142371	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	120039407	159440891	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	100807373	145807373	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	106869825	151869825	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
5135226	Leukc2	Leukocyte quantity QTL 2			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	2	120039407	151869825	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	93602631	145807373	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
61392	Bp6	Blood pressure QTL 6	7		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	82214549	127214549	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
7488933	Bp368	Blood pressure QTL 368		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	104957381	149957381	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	120339555	165339555	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	114032149	150226270	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	114440891	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	116804572	161804572	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	61051541	143746880	Rat

Markers in Region

BI294258

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	124,553,416 - 124,553,666 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	128,471,354 - 128,471,603	NCBI	Rnor6.0
Rnor_5.0	2	148,071,525 - 148,071,774	UniSTS	Rnor5.0
RGSC_v3.4	2	128,510,113 - 128,510,362	UniSTS	RGSC3.4
Celera	2	119,456,119 - 119,456,368	UniSTS
RH 3.4 Map	2	661.0	UniSTS
Cytogenetic Map	2	q26	UniSTS

AW534015

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	126,522,116 - 126,522,331 (+)	Marker Load Pipeline
mRatBN7.2	2	124,594,225 - 124,594,440 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	128,512,163 - 128,512,377	NCBI	Rnor6.0
Rnor_5.0	2	148,112,334 - 148,112,548	UniSTS	Rnor5.0
RGSC_v3.4	2	128,550,922 - 128,551,136	UniSTS	RGSC3.4
Celera	2	119,496,850 - 119,497,064	UniSTS
RH 3.4 Map	2	661.0	UniSTS
Cytogenetic Map	2	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001415052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018872 ⟹ ENSRNOP00000018872

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	126,471,124 - 126,524,252 (+)	Ensembl
mRatBN7.2 Ensembl	2	124,543,286 - 124,596,354 (+)	Ensembl
Rnor_6.0 Ensembl	2	128,461,224 - 128,514,291 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098865 ⟹ ENSRNOP00000090026

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	126,472,897 - 126,524,252 (+)	Ensembl
mRatBN7.2 Ensembl	2	124,545,126 - 124,596,354 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100298 ⟹ ENSRNOP00000088679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	126,471,305 - 126,513,222 (+)	Ensembl
mRatBN7.2 Ensembl	2	124,544,726 - 124,586,054 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120008 ⟹ ENSRNOP00000090751

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	126,496,294 - 126,524,252 (+)	Ensembl
mRatBN7.2 Ensembl	2	124,570,650 - 124,596,354 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172515 ⟹ ENSRNOP00000105202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	126,472,247 - 126,524,252 (+)	Ensembl

RefSeq Acc Id:

NM_001415052 ⟹ NP_001401981

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	126,471,124 - 126,524,252 (+)	NCBI
mRatBN7.2	2	124,543,233 - 124,596,361 (+)	NCBI

RefSeq Acc Id:

XM_006232301 ⟹ XP_006232363

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	126,472,714 - 126,524,252 (+)	NCBI
mRatBN7.2	2	124,544,885 - 124,596,361 (+)	NCBI
Rnor_6.0	2	128,462,785 - 128,514,298 (+)	NCBI
Rnor_5.0	2	148,061,324 - 148,114,469 (+)	NCBI

Sequence:

show sequence

CGGGCGGCGGGGGAAGGGACTGGGTACGCCGGGGCACGAGCCTACGCGGCACGTGGGCAGGTGC
TGGTTGGCCCCGGGGCCAACTTTTGCAGCCCGCCCTCCGGTGCAGGCGAGAGGCAGCGGGCGCA
GAGACGGGGCCGGGCGGCGGCCCCAAGGCGGCTCCTTGTCGCTGCCCGAGCGTCGCCTAACGGT
CCCAGGCGCTCGGGGTCCGCGCGGGGGTAGCCCGGCCCAGTCCCCACGCCGGAGTCCCGCACAA
AGCCCGCGGCGCGGGGTGGCCGCCGCCCGTCGCCGTCCCTGTTCCCGCGTCGCGGCGGCCGCAG
GCGTTTGTTTGTTGCTTGCGCGCCGCCCTGCGCGCCGGATGGCTTCCTGTGACAGAGGCTGTCT
GCTGTCTCCCGGGGAGATCATGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACGAC
AATGGCAGCTTGTCAACGACGTGGTCCCAGCATTCTCGGTCCCAGCATGGGAGGAGTACCTGCT
CTAGACATGAAGATCGAAAGCCTTCTGAGGTGTTTAGGACGGACCTGATCACTGCCATGAAGCT
GCATGACTCCTACCAGCTGAACCCGGATGAGTACTACGTGTTGGCTGATCCCTGGAGACAGGAA
TGGGAGAAGGGGGTCCAGGTGCCTGTGAGCCCAGGGACCATCCCACAGCCTGTGGCCAGGGTTG
TGTCTGAAGAGAAATCACTCATGTTCATCAGGCCCAAGAAGTACATCGCGTCGTCAGGCTCCGA
GCCCCCAGAGCTGGGCTATGTTGATATCCGGACACTGGCAGACAGTGTATGTCGGTATGACCTC
AATGATATGGATGCTGCATGGCTGGAACTAACCAATGAAGAATTTAAGGAGATGGGGATGCCGG
AACTGGATGAGTACACCATGGAAAGGGTCTTGGAGGAGTTTGAACAGCGATGCTATGACAATAT
GAATCATGCCATAGAGACAGAAGAGGGCTTGGGGATCGAATATGATGAAGACGTTGTCTGCGAT
GTCTGCCAGTCACCTGATGGCGAGGACGGCAACGAGATGGTATTCTGTGACAAGTGTAACATCT
GTGTGCACCAGGCTTGCTATGGAATCCTTAAGGTGCCAGAGGGCAGTTGGCTATGCCGTACATG
TGCCCTGGGAGTTCAGCCAAAATGTTTGCTGTGTCCCAAGAAAGGCGGAGCTATGAAGCCTACC
CGCAGTGGAACCAAGTGGGTCCATGTCAGCTGTGCCCTGTGGATCCCTGAGGTAAGCATTGGCA
GCCCTGAGAAGATGGAGCCCATCACAAAAGTGTCCCACATTCCGAGCAGTCGATGGGCGCTTGT
GTGCAGCCTCTGCAATGAGAAATTTGGGGCCTCCATACAGTGCTCTGTGAAGAACTGCCGGACA
GCCTTCCATGTGACTTGTGCTTTTGACCGTGGCCTGGAGATGAAGACCATATTGGCAGAGAATG
ATGAAGTCAAATTCAAGTCCTACTGCCCAAAGCACAGCTCACACAGGAAACCTGAGGAGAGCCT
GGGTGAAGGAGCAGCCCAGGAGAATGGGGCCACTGAGTGTTCTCCCCAGAGCCCTCTGGAGCCC
TTTGCTAGTCTGGAGCAGAATCGAGAGGAGGCCCACCGTGTGAGTGTTCGCAAGCAGAAGCTAC
AGCAGCTGGAGGATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGGCCAGGGCCCTGCGACT
GCCTGAGGAAGTGGTGGATTTTCTGTACCAGTACTGGAAGCTGAAGAGGAAGATCAACTTCAAC
AAGCCCCTCATCACTCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCT
TGTTTAGGAGGCTGCAGCTGTTCACGCACCTGCGGCAGGACCTGGAGAGGGTTCGGAACCTCAC
TTACATGGTGACCCGCAGGGAAAAGATTAAACGGTCTGTGTGCAAAGTCCAGGAACAGATTTTC
AGTCTTTACGCTAAGCTCTTGGAGCAAGGAAAAGTTTCAGGTGTGCCTTCTTCCTGCTCCTCAC
TGGAGAACATGCTTTTGTTCAACAGTCCTTCTGTGGGCCCCAATGTTCCCAAGATAGAGGACTT
GAAGTGGCATTCTGCATTCTTCAGGAAACAAATGGGTACTAACTTGGTTCATTCACTGAAAAAG
TCCCATAAGCGAGATGCATTGCAGAACAGTTCTGGGACTGAGGGAAAGACCCTGCTAAAGCAGC
CAGGTCTGTCTGGTAGGAGGGAGGGGTCGGGGGTCCCAGAAAGCCTTCTGAGCTTTGAAAAGAC
TTTTGCAGAAGCACGTCTCATATCATCAGCACAACAGAAAAATGGTGTGGTGACCCCAGACCAT
GGGAAAAGAAGAGACAATCGTTTTCATTGTGATCTTGTTAAAGGAGACTTAAAGGACAAATCTT
TTAAACAGAGTCACAAGCCTCTCAGGTCTACAGACACATCCCAGAGGCATCTGGACAACACAAG
AGCTGCCACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTGTGCCCAAG
TGCAATGGCTCCCTAGTCAAAGTGCCTACAACACCTGCCAGCCCAGTGAAAAGCTGGGGAGGAT
TCCGGATTCCAAAGAAGGGGGAACGGCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCA
GCACTCAGACTGCTCCCATCTGGGTATAAGCCGAGCTCCAGCCAAGGAGAGATCGAAGAGCAGG
TTAAGAACTGACAGTGAGAACGATGGTTACGCCCCTGATGGGGAAATGAGTGACTCAGAAAGCG
AGGCATCAGAGAAGAAATGTATCCATGCCAGCAGCACCATCAGCAGGAGGACAGATATCATCAG
GAGAAGCATCTTGGCCTCTTGATGAAACAGCCGGTGTGGAAGCATATGTTGCCATGTGCTGAGG
AGAGCTCTGATATGGGGGCAAGCAAAAACCCATTGTTTCTGAGCTCCACAAACAGATTTTCTTG
CAATTCAGATTGAATTTTTTTTCCAGTCATTTATAAATCATTGTGAGAAGTTTGTGTTATTTGC
AACTTGTTGAGGAAACAGAAGAGTAGATTGTAACCATAAGACACTAAGATTAGAACCTGAACTA
AACACTAAGAAAACAAATGAAGTAACTTTACAGAGGGGGCCAGGCTTGAATAGTATTATTGCCC
TCTACATTTTCCCCAAAGCACAAACTCTTGAATACTCTAGCAGAATCATAGAATTCTGTGTAGT
GAATAAGTCCTATTTATAGAAGCCCTCATGTACCATTTATAGCCCACAGAGCTTATTTTCTAGG
AATGGTAAATGCTGACAGCATTTGGCTCCCAGGCTGTGTGGTTGTGAGTAGCTGAGGCTCAGAA
ACTTGAGCAACACTGGGATCTTGCACATGTGGCATCCAGGGGAAGAGTTTACACAACAGGCACT
GCTGGAAGGCTGGAGGAGCAGAGCTGCTGCAGTGAGATTTAGGGCTTGTGTAGCGAGGTCCTGA
AGCCCTGAGTGGGCTGTGGACATAGGACGGGTAGAGAAAAAGTTGTCAAGAAAGTTTTGTGAGA
AAGGGCAGCTGAGGCCCAGGTGTTATTAGTCCGCTTGACCTTCCTCTTTCCTAACTGCTGGCCT
TTGGACCCAAATGGGATTCCCCTGGCTACTGCCAGTACTTAGCCATCTGGCTTCCAATAATACA
GTGGTTATTCGAGTTCAAGTGATGAACTTCAGACTTTGGTGACTCTCACTCTGCAGAGTCAACC
ACTAGTACATATTTGGGAAATCCAGGCTTCCACCATGAGTGGATTCCTTAAGCAAAAGGAAAAA
AAGAAGCAAAACAGGTTATATTTTAAAACATAGAAAGGCAATAAGTTGCATCAAGGTTATACAG
GAAAGAAGTCAAAATGTATCCTTGAATAGGTTTCTGGAGTTGGAATAGGTTTCTAAACTCTTGA
TTTGTAACTTGGACTTTCGAATTGCATATGGCAATAATTAGTAAGTTATCAGCAATAATAAATT
TAGCATTAAATTTGAGTATAATGTTCTGTTTTTGCACTCCTCATATAGTGCATATGTATTCAGA
CAAGTGGATAGTGTTAAAGTCCTGTTATTTTCTTTGGAATTCAATGTAGTTGTGAATCAAATTT
AAGAGAAGGCAAGTTTCAGTAGCAATGAGATTTAGAATTAAGGGCATTTGGAGTAAGCCCGGTT
TCCCCGAAATTACCCTTAGTTTATTAATATCAATGTTCAGATTCCTGATTCATTTATACATCTG
TTTCCATGTGGCAGGGACATTCTGATAATTAATGAGCAATGTTTTGAATTTGTAGAAGCTTTCA
AGTCTTCCAGATGATCGTCAACAACAGAAAAGGCTTATTGAATTCCATCTTGCTATGCAAGTTT
TATCAGATGATCAAATGACAGATCTGATGCATCTCATTGTATGTATGACATTTTCAAACCAAGT
CTTAACTTCTCAAGTACATTGTAGTAGCTAATTCAGGGGAGGGGAAAGGATGACCCAGGTTTTA
GATTGACTATTTTTTGAGCTATGGAGCTCCTTTGAGACTGCTGTCCAGATCAGCTTGTTGCTAC
CAGTATTAGAAGATTTTTAGGAGTCCAAGTTGTACTTTTGCTTGTAGCCTAATTTAAAAATGAG
ATGTTTTGCATATGAGCAAAACCCTTGTGCTGGATACAGGAAAAGGCTGGACCCTTATCTAGTT
ATCTTTTGATAACAGCAACAGCTCTGGTGAGATAGGATTTATAGAGGGATAACCTGTGAAGCCA
TAGAAAGAAAACCTAAATTGATTTAGTGAGTGTACGGCCTCTCACCATTTTAGGAGGCACCAGA
TTCATTTGCACTATTAGGAATGCTAGTTTTGTGCAAAAATAATGCCTTACCTGTTTTCCCCCAC
ATTTAGGTTGAAAAGCTTTCAAATGTTCCAAGTTATGCTGAACCAAAAACAAAACAAAACAAAA
CAAAACAAAAAAAACCCAACAAAATAGTAAAAAAAAAAAATAAAAAAAAATTTCCCCCACAAAA
ACTAAATAAAAAAAAATAAAGCCCACATGTTTAATTACTGCTTTGAAATGCAAATGGTCTAGAG
CACGGTTTCTGACAGTGTAATGATAGCTTTGTAAGTTAGTTTCATGTCATGCTGGGAACTCTGT
ATGAGGTGGCCACAAGCAGCCACAGTCCACCTACCCACTTGCATTCTATTAGTATTGAGCTTTT
TTGTTTGTTTGTTCTTTTGAATCTTCCTTGTGCATCCTGACCAAGAAATATCTTTGATTATGAT
CAATGTATTATGTCAAAATGTAGGCTAGTTGAACTTTTGTAAAGTTGCCTGGAATGTCATTTGT
TAGGTTATAAACAAAAATTTAAATGAAGGGTTTTATGTGTTGTGTACAAATCTTAATTATTTTA
AAATGGACAGACTCGTCATTACATTTGTAACCTTGTACAGAGGATTTTTCACTATGTGCCTAGC
TTGGTGTCCATTCAACTAAAATTGAAAAAAAAAAGGTGCATGAAGAGTTAAAATCAGAAGTTAA
ACAAAGTCTATGTAGAGATGACTATTTTATATTACATGGCCCAATCCTGTATTTATTTCTATCC
CCTTTTTGAAAGTATTTATAAAACTAGTTGAAGACAGCTGTATTTTTTTGTTGAACTATTTAGT
AGAATTTGTGCCTTTTTGTCTGTATGTGAATAAATGCTGTACATTTTGCAATACA

hide sequence

RefSeq Acc Id:

XM_006232303 ⟹ XP_006232365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	126,471,325 - 126,524,252 (+)	NCBI
mRatBN7.2	2	124,543,603 - 124,596,361 (+)	NCBI
Rnor_6.0	2	128,461,371 - 128,514,298 (+)	NCBI
Rnor_5.0	2	148,061,324 - 148,114,469 (+)	NCBI

Sequence:

show sequence

CGCGTCTCAGGCCGCGGCCGCGGCGGCTGCAGGACGAGCCGAGAGACTCAGCCATATTTGATGG
TTTTGTTGCTTCGCTCGGGAGTTCTCGGGAGTAATGTAATGCCGAAGGTCGCTGCCTAGTGGAA
ATAATATAGTACGTCATTAATATGGCGCCAAAAGATTGGGCTGTGGATCTGTAGCGCGGAGGGA
GGAGGCGGCCGCCCGCGCCGAGGCACTATCCCACCAGCAACTTGGGCATCGCCGGGTGGGGGCC
GGCGACGAGGCCGGGATGGCCGCGGAGCCCGGGAATTGATCGGTGTCGGATCAGCTGTCTGCTG
TCTCCCGGGGAGATCATGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATG
GCAGCTTGTCAACGACGTGGTCCCAGCATTCTCGGTCCCAGCATGGGAGGAGTACCTGCTCTAG
ACATGAAGATCGAAAGCCTTCTGAGGTGTTTAGGACGGACCTGATCACTGCCATGAAGCTGCAT
GACTCCTACCAGCTGAACCCGGATGAGTACTACGTGTTGGCTGATCCCTGGAGACAGGAATGGG
AGAAGGGGGTCCAGGTGCCTGTGAGCCCAGGGACCATCCCACAGCCTGTGGCCAGGGTTGTGTC
TGAAGAGAAATCACTCATGTTCATCAGGCCCAAGAAGTACATCGCGTCGTCAGGCTCCGAGCCC
CCAGAGCTGGGCTATGTTGATATCCGGACACTGGCAGACAGTGTATGTCGGTATGACCTCAATG
ATATGGATGCTGCATGGCTGGAACTAACCAATGAAGAATTTAAGGAGATGGGGATGCCGGAACT
GGATGAGTACACCATGGAAAGGGTCTTGGAGGAGTTTGAACAGCGATGCTATGACAATATGAAT
CATGCCATAGAGACAGAAGAGGGCTTGGGGATCGAATATGATGAAGACGTTGTCTGCGATGTCT
GCCAGTCACCTGATGGCGAGGACGGCAACGAGATGGTATTCTGTGACAAGTGTAACATCTGTGT
GCACCAGGCTTGCTATGGAATCCTTAAGGTGCCAGAGGGCAGTTGGCTATGCCGTACATGTGCC
CTGGGAGTTCAGCCAAAATGTTTGCTGTGTCCCAAGAAAGGCGGAGCTATGAAGCCTACCCGCA
GTGGAACCAAGTGGGTCCATGTCAGCTGTGCCCTGTGGATCCCTGAGGTAAGCATTGGCAGCCC
TGAGAAGATGGAGCCCATCACAAAAGTGTCCCACATTCCGAGCAGTCGATGGGCGCTTGTGTGC
AGCCTCTGCAATGAGAAATTTGGGGCCTCCATACAGTGCTCTGTGAAGAACTGCCGGACAGCCT
TCCATGTGACTTGTGCTTTTGACCGTGGCCTGGAGATGAAGACCATATTGGCAGAGAATGATGA
AGTCAAATTCAAGTCCTACTGCCCAAAGCACAGCTCACACAGGAAACCTGAGGAGAGCCTGGGT
GAAGGAGCAGCCCAGGAGAATGGGGCCACTGAGTGTTCTCCCCAGAGCCCTCTGGAGCCCTTTG
CTAGTCTGGAGCAGAATCGAGAGGAGGCCCACCGTGTGAGTGTTCGCAAGCAGAAGCTACAGCA
GCTGGAGGATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGGCCAGGGCCCTGCGACTGCCT
GAGGAAGTGGTGGATTTTCTGTACCAGTACTGGAAGCTGAAGAGGAAGATCAACTTCAACAAGC
CCCTCATCACTCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTT
TAGGAGGCTGCAGCTGTTCACGCACCTGCGGCAGGACCTGGAGAGGGTTCGGAACCTCACTTAC
ATGGTGACCCGCAGGGAAAAGATTAAACGGTCTGTGTGCAAAGTCCAGGAACAGATTTTCAGTC
TTTACGCTAAGCTCTTGGAGCAAGGAAAAGTTTCAGGTGTGCCTTCTTCCTGCTCCTCACTGGA
GAACATGCTTTTGTTCAACAGTCCTTCTGTGGGCCCCAATGTTCCCAAGATAGAGGACTTGAAG
TGGCATTCTGCATTCTTCAGGAAACAAATGGGTACTAACTTGGTTCATTCACTGAAAAAGTCCC
ATAAGCGAGATGCATTGCAGAACAGTTCTGGGACTGAGGGAAAGACCCTGCTAAAGCAGCCAGG
TCTGTCTGGTAGGAGGGAGGGGTCGGGGGTCCCAGAAAGCCTTCTGAGCTTTGAAAAGACTTTT
GCAGAAGCACGTCTCATATCATCAGCACAACAGAAAAATGGTGTGGTGACCCCAGACCATGGGA
AAAGAAGAGACAATCGTTTTCATTGTGATCTTGTTAAAGGAGACTTAAAGGACAAATCTTTTAA
ACAGAGTCACAAGCCTCTCAGGTCTACAGACACATCCCAGAGGCATCTGGACAACACAAGAGCT
GCCACCTCCCCTGGAGTAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTGTGCCCAAGTGCA
ATGGCTCCCTAGTCAAAGTGCCTACAACACCTGCCAGCCCAGTGAAAAGCTGGGGAGGATTCCG
GATTCCAAAGAAGGGGGAACGGCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCAC
TCAGACTGCTCCCATCTGGGTATAAGCCGAGCTCCAGCCAAGGAGAGATCGAAGAGCAGGTTAA
GAACTGACAGTGAGAACGATGGTTACGCCCCTGATGGGGAAATGAGTGACTCAGAAAGCGAGGC
ATCAGAGAAGAAATGTATCCATGCCAGCAGCACCATCAGCAGGAGGACAGATATCATCAGGAGA
AGCATCTTGGCCTCTTGATGAAACAGCCGGTGTGGAAGCATATGTTGCCATGTGCTGAGGAGAG
CTCTGATATGGGGGCAAGCAAAAACCCATTGTTTCTGAGCTCCACAAACAGATTTTCTTGCAAT
TCAGATTGAATTTTTTTTCCAGTCATTTATAAATCATTGTGAGAAGTTTGTGTTATTTGCAACT
TGTTGAGGAAACAGAAGAGTAGATTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACA
CTAAGAAAACAAATGAAGTAACTTTACAGAGGGGGCCAGGCTTGAATAGTATTATTGCCCTCTA
CATTTTCCCCAAAGCACAAACTCTTGAATACTCTAGCAGAATCATAGAATTCTGTGTAGTGAAT
AAGTCCTATTTATAGAAGCCCTCATGTACCATTTATAGCCCACAGAGCTTATTTTCTAGGAATG
GTAAATGCTGACAGCATTTGGCTCCCAGGCTGTGTGGTTGTGAGTAGCTGAGGCTCAGAAACTT
GAGCAACACTGGGATCTTGCACATGTGGCATCCAGGGGAAGAGTTTACACAACAGGCACTGCTG
GAAGGCTGGAGGAGCAGAGCTGCTGCAGTGAGATTTAGGGCTTGTGTAGCGAGGTCCTGAAGCC
CTGAGTGGGCTGTGGACATAGGACGGGTAGAGAAAAAGTTGTCAAGAAAGTTTTGTGAGAAAGG
GCAGCTGAGGCCCAGGTGTTATTAGTCCGCTTGACCTTCCTCTTTCCTAACTGCTGGCCTTTGG
ACCCAAATGGGATTCCCCTGGCTACTGCCAGTACTTAGCCATCTGGCTTCCAATAATACAGTGG
TTATTCGAGTTCAAGTGATGAACTTCAGACTTTGGTGACTCTCACTCTGCAGAGTCAACCACTA
GTACATATTTGGGAAATCCAGGCTTCCACCATGAGTGGATTCCTTAAGCAAAAGGAAAAAAAGA
AGCAAAACAGGTTATATTTTAAAACATAGAAAGGCAATAAGTTGCATCAAGGTTATACAGGAAA
GAAGTCAAAATGTATCCTTGAATAGGTTTCTGGAGTTGGAATAGGTTTCTAAACTCTTGATTTG
TAACTTGGACTTTCGAATTGCATATGGCAATAATTAGTAAGTTATCAGCAATAATAAATTTAGC
ATTAAATTTGAGTATAATGTTCTGTTTTTGCACTCCTCATATAGTGCATATGTATTCAGACAAG
TGGATAGTGTTAAAGTCCTGTTATTTTCTTTGGAATTCAATGTAGTTGTGAATCAAATTTAAGA
GAAGGCAAGTTTCAGTAGCAATGAGATTTAGAATTAAGGGCATTTGGAGTAAGCCCGGTTTCCC
CGAAATTACCCTTAGTTTATTAATATCAATGTTCAGATTCCTGATTCATTTATACATCTGTTTC
CATGTGGCAGGGACATTCTGATAATTAATGAGCAATGTTTTGAATTTGTAGAAGCTTTCAAGTC
TTCCAGATGATCGTCAACAACAGAAAAGGCTTATTGAATTCCATCTTGCTATGCAAGTTTTATC
AGATGATCAAATGACAGATCTGATGCATCTCATTGTATGTATGACATTTTCAAACCAAGTCTTA
ACTTCTCAAGTACATTGTAGTAGCTAATTCAGGGGAGGGGAAAGGATGACCCAGGTTTTAGATT
GACTATTTTTTGAGCTATGGAGCTCCTTTGAGACTGCTGTCCAGATCAGCTTGTTGCTACCAGT
ATTAGAAGATTTTTAGGAGTCCAAGTTGTACTTTTGCTTGTAGCCTAATTTAAAAATGAGATGT
TTTGCATATGAGCAAAACCCTTGTGCTGGATACAGGAAAAGGCTGGACCCTTATCTAGTTATCT
TTTGATAACAGCAACAGCTCTGGTGAGATAGGATTTATAGAGGGATAACCTGTGAAGCCATAGA
AAGAAAACCTAAATTGATTTAGTGAGTGTACGGCCTCTCACCATTTTAGGAGGCACCAGATTCA
TTTGCACTATTAGGAATGCTAGTTTTGTGCAAAAATAATGCCTTACCTGTTTTCCCCCACATTT
AGGTTGAAAAGCTTTCAAATGTTCCAAGTTATGCTGAACCAAAAACAAAACAAAACAAAACAAA
ACAAAAAAAACCCAACAAAATAGTAAAAAAAAAAAATAAAAAAAAATTTCCCCCACAAAAACTA
AATAAAAAAAAATAAAGCCCACATGTTTAATTACTGCTTTGAAATGCAAATGGTCTAGAGCACG
GTTTCTGACAGTGTAATGATAGCTTTGTAAGTTAGTTTCATGTCATGCTGGGAACTCTGTATGA
GGTGGCCACAAGCAGCCACAGTCCACCTACCCACTTGCATTCTATTAGTATTGAGCTTTTTTGT
TTGTTTGTTCTTTTGAATCTTCCTTGTGCATCCTGACCAAGAAATATCTTTGATTATGATCAAT
GTATTATGTCAAAATGTAGGCTAGTTGAACTTTTGTAAAGTTGCCTGGAATGTCATTTGTTAGG
TTATAAACAAAAATTTAAATGAAGGGTTTTATGTGTTGTGTACAAATCTTAATTATTTTAAAAT
GGACAGACTCGTCATTACATTTGTAACCTTGTACAGAGGATTTTTCACTATGTGCCTAGCTTGG
TGTCCATTCAACTAAAATTGAAAAAAAAAAGGTGCATGAAGAGTTAAAATCAGAAGTTAAACAA
AGTCTATGTAGAGATGACTATTTTATATTACATGGCCCAATCCTGTATTTATTTCTATCCCCTT
TTTGAAAGTATTTATAAAACTAGTTGAAGACAGCTGTATTTTTTTGTTGAACTATTTAGTAGAA
TTTGTGCCTTTTTGTCTGTATGTGAATAAATGCTGTACATTTTGCAATACA

hide sequence

RefSeq Acc Id:

XM_006232304 ⟹ XP_006232366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	126,472,575 - 126,524,252 (+)	NCBI
mRatBN7.2	2	124,544,685 - 124,596,361 (+)	NCBI
Rnor_6.0	2	128,462,672 - 128,514,298 (+)	NCBI
Rnor_5.0	2	148,061,324 - 148,114,469 (+)	NCBI

Sequence:

show sequence

GCAGCGGCGGGAGGCAGGTGCACAGCACCGCCGGTGGGGGTGCCTCAACTTCCGCGGGCGTTTA
AATAGCAGCGGGGCTCCCCTCCCACCGGCTGTCTGCTGTCTCCCGGGGAGATCATGAAACGAGG
TCGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCAGCTTGTCAACGACGTGGTCCCAG
CATTCTCGGTCCCAGCATGGGAGGAGTACCTGCTCTAGACATGAAGATCGAAAGCCTTCTGAGG
TGTTTAGGACGGACCTGATCACTGCCATGAAGCTGCATGACTCCTACCAGCTGAACCCGGATGA
GTACTACGTGTTGGCTGATCCCTGGAGACAGGAATGGGAGAAGGGGGTCCAGGTGCCTGTGAGC
CCAGGGACCATCCCACAGCCTGTGGCCAGGGTTGTGTCTGAAGAGAAATCACTCATGTTCATCA
GGCCCAAGAAGTACATCGCGTCGTCAGGCTCCGAGCCCCCAGAGCTGGGCTATGTTGATATCCG
GACACTGGCAGACAGTGTATGTCGGTATGACCTCAATGATATGGATGCTGCATGGCTGGAACTA
ACCAATGAAGAATTTAAGGAGATGGGGATGCCGGAACTGGATGAGTACACCATGGAAAGGGTCT
TGGAGGAGTTTGAACAGCGATGCTATGACAATATGAATCATGCCATAGAGACAGAAGAGGGCTT
GGGGATCGAATATGATGAAGACGTTGTCTGCGATGTCTGCCAGTCACCTGATGGCGAGGACGGC
AACGAGATGGTATTCTGTGACAAGTGTAACATCTGTGTGCACCAGGCTTGCTATGGAATCCTTA
AGGTGCCAGAGGGCAGTTGGCTATGCCGTACATGTGCCCTGGGAGTTCAGCCAAAATGTTTGCT
GTGTCCCAAGAAAGGCGGAGCTATGAAGCCTACCCGCAGTGGAACCAAGTGGGTCCATGTCAGC
TGTGCCCTGTGGATCCCTGAGGTAAGCATTGGCAGCCCTGAGAAGATGGAGCCCATCACAAAAG
TGTCCCACATTCCGAGCAGTCGATGGGCGCTTGTGTGCAGCCTCTGCAATGAGAAATTTGGGGC
CTCCATACAGTGCTCTGTGAAGAACTGCCGGACAGCCTTCCATGTGACTTGTGCTTTTGACCGT
GGCCTGGAGATGAAGACCATATTGGCAGAGAATGATGAAGTCAAATTCAAGTCCTACTGCCCAA
AGCACAGCTCACACAGGAAACCTGAGGAGAGCCTGGGTGAAGGAGCAGCCCAGGAGAATGGGGC
CACTGAGTGTTCTCCCCAGAGCCCTCTGGAGCCCTTTGCTAGTCTGGAGCAGAATCGAGAGGAG
GCCCACCGTGTGAGTGTTCGCAAGCAGAAGCTACAGCAGCTGGAGGATGAGTTCTACACCTTTG
TCAACCTGCTGGATGTGGCCAGGGCCCTGCGACTGCCTGAGGAAGTGGTGGATTTTCTGTACCA
GTACTGGAAGCTGAAGAGGAAGATCAACTTCAACAAGCCCCTCATCACTCCAAAGAAAGACGAA
GAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACC
TGCGGCAGGACCTGGAGAGGGTTCGGAACCTCACTTACATGGTGACCCGCAGGGAAAAGATTAA
ACGGTCTGTGTGCAAAGTCCAGGAACAGATTTTCAGTCTTTACGCTAAGCTCTTGGAGCAAGGA
AAAGTTTCAGGTGTGCCTTCTTCCTGCTCCTCACTGGAGAACATGCTTTTGTTCAACAGTCCTT
CTGTGGGCCCCAATGTTCCCAAGATAGAGGACTTGAAGTGGCATTCTGCATTCTTCAGGAAACA
AATGGGTACTAACTTGGTTCATTCACTGAAAAAGTCCCATAAGCGAGATGCATTGCAGAACAGT
TCTGGGACTGAGGGAAAGACCCTGCTAAAGCAGCCAGGTCTGTCTGGTAGGAGGGAGGGGTCGG
GGGTCCCAGAAAGCCTTCTGAGCTTTGAAAAGACTTTTGCAGAAGCACGTCTCATATCATCAGC
ACAACAGAAAAATGGTGTGGTGACCCCAGACCATGGGAAAAGAAGAGACAATCGTTTTCATTGT
GATCTTGTTAAAGGAGACTTAAAGGACAAATCTTTTAAACAGAGTCACAAGCCTCTCAGGTCTA
CAGACACATCCCAGAGGCATCTGGACAACACAAGAGCTGCCACCTCCCCTGGAGTAGGGCAGTC
AGCACCTGGCACCAGGAAGGAGATTGTGCCCAAGTGCAATGGCTCCCTAGTCAAAGTGCCTACA
ACACCTGCCAGCCCAGTGAAAAGCTGGGGAGGATTCCGGATTCCAAAGAAGGGGGAACGGCAGC
AGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCACTCAGACTGCTCCCATCTGGGTATAAG
CCGAGCTCCAGCCAAGGAGAGATCGAAGAGCAGGTTAAGAACTGACAGTGAGAACGATGGTTAC
GCCCCTGATGGGGAAATGAGTGACTCAGAAAGCGAGGCATCAGAGAAGAAATGTATCCATGCCA
GCAGCACCATCAGCAGGAGGACAGATATCATCAGGAGAAGCATCTTGGCCTCTTGATGAAACAG
CCGGTGTGGAAGCATATGTTGCCATGTGCTGAGGAGAGCTCTGATATGGGGGCAAGCAAAAACC
CATTGTTTCTGAGCTCCACAAACAGATTTTCTTGCAATTCAGATTGAATTTTTTTTCCAGTCAT
TTATAAATCATTGTGAGAAGTTTGTGTTATTTGCAACTTGTTGAGGAAACAGAAGAGTAGATTG
TAACCATAAGACACTAAGATTAGAACCTGAACTAAACACTAAGAAAACAAATGAAGTAACTTTA
CAGAGGGGGCCAGGCTTGAATAGTATTATTGCCCTCTACATTTTCCCCAAAGCACAAACTCTTG
AATACTCTAGCAGAATCATAGAATTCTGTGTAGTGAATAAGTCCTATTTATAGAAGCCCTCATG
TACCATTTATAGCCCACAGAGCTTATTTTCTAGGAATGGTAAATGCTGACAGCATTTGGCTCCC
AGGCTGTGTGGTTGTGAGTAGCTGAGGCTCAGAAACTTGAGCAACACTGGGATCTTGCACATGT
GGCATCCAGGGGAAGAGTTTACACAACAGGCACTGCTGGAAGGCTGGAGGAGCAGAGCTGCTGC
AGTGAGATTTAGGGCTTGTGTAGCGAGGTCCTGAAGCCCTGAGTGGGCTGTGGACATAGGACGG
GTAGAGAAAAAGTTGTCAAGAAAGTTTTGTGAGAAAGGGCAGCTGAGGCCCAGGTGTTATTAGT
CCGCTTGACCTTCCTCTTTCCTAACTGCTGGCCTTTGGACCCAAATGGGATTCCCCTGGCTACT
GCCAGTACTTAGCCATCTGGCTTCCAATAATACAGTGGTTATTCGAGTTCAAGTGATGAACTTC
AGACTTTGGTGACTCTCACTCTGCAGAGTCAACCACTAGTACATATTTGGGAAATCCAGGCTTC
CACCATGAGTGGATTCCTTAAGCAAAAGGAAAAAAAGAAGCAAAACAGGTTATATTTTAAAACA
TAGAAAGGCAATAAGTTGCATCAAGGTTATACAGGAAAGAAGTCAAAATGTATCCTTGAATAGG
TTTCTGGAGTTGGAATAGGTTTCTAAACTCTTGATTTGTAACTTGGACTTTCGAATTGCATATG
GCAATAATTAGTAAGTTATCAGCAATAATAAATTTAGCATTAAATTTGAGTATAATGTTCTGTT
TTTGCACTCCTCATATAGTGCATATGTATTCAGACAAGTGGATAGTGTTAAAGTCCTGTTATTT
TCTTTGGAATTCAATGTAGTTGTGAATCAAATTTAAGAGAAGGCAAGTTTCAGTAGCAATGAGA
TTTAGAATTAAGGGCATTTGGAGTAAGCCCGGTTTCCCCGAAATTACCCTTAGTTTATTAATAT
CAATGTTCAGATTCCTGATTCATTTATACATCTGTTTCCATGTGGCAGGGACATTCTGATAATT
AATGAGCAATGTTTTGAATTTGTAGAAGCTTTCAAGTCTTCCAGATGATCGTCAACAACAGAAA
AGGCTTATTGAATTCCATCTTGCTATGCAAGTTTTATCAGATGATCAAATGACAGATCTGATGC
ATCTCATTGTATGTATGACATTTTCAAACCAAGTCTTAACTTCTCAAGTACATTGTAGTAGCTA
ATTCAGGGGAGGGGAAAGGATGACCCAGGTTTTAGATTGACTATTTTTTGAGCTATGGAGCTCC
TTTGAGACTGCTGTCCAGATCAGCTTGTTGCTACCAGTATTAGAAGATTTTTAGGAGTCCAAGT
TGTACTTTTGCTTGTAGCCTAATTTAAAAATGAGATGTTTTGCATATGAGCAAAACCCTTGTGC
TGGATACAGGAAAAGGCTGGACCCTTATCTAGTTATCTTTTGATAACAGCAACAGCTCTGGTGA
GATAGGATTTATAGAGGGATAACCTGTGAAGCCATAGAAAGAAAACCTAAATTGATTTAGTGAG
TGTACGGCCTCTCACCATTTTAGGAGGCACCAGATTCATTTGCACTATTAGGAATGCTAGTTTT
GTGCAAAAATAATGCCTTACCTGTTTTCCCCCACATTTAGGTTGAAAAGCTTTCAAATGTTCCA
AGTTATGCTGAACCAAAAACAAAACAAAACAAAACAAAACAAAAAAAACCCAACAAAATAGTAA
AAAAAAAAAATAAAAAAAAATTTCCCCCACAAAAACTAAATAAAAAAAAATAAAGCCCACATGT
TTAATTACTGCTTTGAAATGCAAATGGTCTAGAGCACGGTTTCTGACAGTGTAATGATAGCTTT
GTAAGTTAGTTTCATGTCATGCTGGGAACTCTGTATGAGGTGGCCACAAGCAGCCACAGTCCAC
CTACCCACTTGCATTCTATTAGTATTGAGCTTTTTTGTTTGTTTGTTCTTTTGAATCTTCCTTG
TGCATCCTGACCAAGAAATATCTTTGATTATGATCAATGTATTATGTCAAAATGTAGGCTAGTT
GAACTTTTGTAAAGTTGCCTGGAATGTCATTTGTTAGGTTATAAACAAAAATTTAAATGAAGGG
TTTTATGTGTTGTGTACAAATCTTAATTATTTTAAAATGGACAGACTCGTCATTACATTTGTAA
CCTTGTACAGAGGATTTTTCACTATGTGCCTAGCTTGGTGTCCATTCAACTAAAATTGAAAAAA
AAAAGGTGCATGAAGAGTTAAAATCAGAAGTTAAACAAAGTCTATGTAGAGATGACTATTTTAT
ATTACATGGCCCAATCCTGTATTTATTTCTATCCCCTTTTTGAAAGTATTTATAAAACTAGTTG
AAGACAGCTGTATTTTTTTGTTGAACTATTTAGTAGAATTTGTGCCTTTTTGTCTGTATGTGAA
TAAATGCTGTACATTTTGCAATACA

hide sequence

RefSeq Acc Id:

XM_008760928 ⟹ XP_008759150

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	126,472,605 - 126,524,252 (+)	NCBI
mRatBN7.2	2	124,544,706 - 124,596,361 (+)	NCBI
Rnor_6.0	2	128,462,661 - 128,514,298 (+)	NCBI

Sequence:

show sequence

AGTGGCGGAGCGCAGCGGCGGGAGGCAGGTGCACAGCACCGCCGGTGGGGGTGCCTCAACTTCC
GCGGGCGTTTAAATAGCAGCGGGGCTCCCCTCCCACCGGTAATAGGCTGTCTGCTGTCTCCCGG
GGAGATCATGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCAGCTTG
TCAACGACGTGGTCCCAGCATTCTCGGTCCCAGCATGGGAGGAGTACCTGCTCTAGACATGAAG
ATCGAAAGCCTTCTGAGGTGTTTAGGACGGACCTGATCACTGCCATGAAGCTGCATGACTCCTA
CCAGCTGAACCCGGATGAGTACTACGTGTTGGCTGATCCCTGGAGACAGGAATGGGAGAAGGGG
GTCCAGGTGCCTGTGAGCCCAGGGACCATCCCACAGCCTGTGGCCAGGGTTGTGTCTGAAGAGA
AATCACTCATGTTCATCAGGCCCAAGAAGTACATCGCGTCGTCAGGCTCCGAGCCCCCAGAGCT
GGGCTATGTTGATATCCGGACACTGGCAGACAGTGTATGTCGGTATGACCTCAATGATATGGAT
GCTGCATGGCTGGAACTAACCAATGAAGAATTTAAGGAGATGGGGATGCCGGAACTGGATGAGT
ACACCATGGAAAGGGTCTTGGAGGAGTTTGAACAGCGATGCTATGACAATATGAATCATGCCAT
AGAGACAGAAGAGGGCTTGGGGATCGAATATGATGAAGACGTTGTCTGCGATGTCTGCCAGTCA
CCTGATGGCGAGGACGGCAACGAGATGGTATTCTGTGACAAGTGTAACATCTGTGTGCACCAGG
CTTGCTATGGAATCCTTAAGGTGCCAGAGGGCAGTTGGCTATGCCGTACATGTGCCCTGGGAGT
TCAGCCAAAATGTTTGCTGTGTCCCAAGAAAGGCGGAGCTATGAAGCCTACCCGCAGTGGAACC
AAGTGGGTCCATGTCAGCTGTGCCCTGTGGATCCCTGAGGTAAGCATTGGCAGCCCTGAGAAGA
TGGAGCCCATCACAAAAGTGTCCCACATTCCGAGCAGTCGATGGGCGCTTGTGTGCAGCCTCTG
CAATGAGAAATTTGGGGCCTCCATACAGTGCTCTGTGAAGAACTGCCGGACAGCCTTCCATGTG
ACTTGTGCTTTTGACCGTGGCCTGGAGATGAAGACCATATTGGCAGAGAATGATGAAGTCAAAT
TCAAGTCCTACTGCCCAAAGCACAGCTCACACAGGAAACCTGAGGAGAGCCTGGGTGAAGGAGC
AGCCCAGGAGAATGGGGCCACTGAGTGTTCTCCCCAGAGCCCTCTGGAGCCCTTTGCTAGTCTG
GAGCAGAATCGAGAGGAGGCCCACCGTGTGAGTGTTCGCAAGCAGAAGCTACAGCAGCTGGAGG
ATGAGTTCTACACCTTTGTCAACCTGCTGGATGTGGCCAGGGCCCTGCGACTGCCTGAGGAAGT
GGTGGATTTTCTGTACCAGTACTGGAAGCTGAAGAGGAAGATCAACTTCAACAAGCCCCTCATC
ACTCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGC
TGCAGCTGTTCACGCACCTGCGGCAGGACCTGGAGAGGGTTCGGAACCTCACTTACATGGTGAC
CCGCAGGGAAAAGATTAAACGGTCTGTGTGCAAAGTCCAGGAACAGATTTTCAGTCTTTACGCT
AAGCTCTTGGAGCAAGGAAAAGTTTCAGGTGTGCCTTCTTCCTGCTCCTCACTGGAGAACATGC
TTTTGTTCAACAGTCCTTCTGTGGGCCCCAATGTTCCCAAGATAGAGGACTTGAAGTGGCATTC
TGCATTCTTCAGGAAACAAATGGGTACTAACTTGGTTCATTCACTGAAAAAGTCCCATAAGCGA
GATGCATTGCAGAACAGTTCTGGGACTGAGGGAAAGACCCTGCTAAAGCAGCCAGGTCTGTCTG
GTAGGAGGGAGGGGTCGGGGGTCCCAGAAAGCCTTCTGAGCTTTGAAAAGACTTTTGCAGAAGC
ACGTCTCATATCATCAGCACAACAGAAAAATGGTGTGGTGACCCCAGACCATGGGAAAAGAAGA
GACAATCGTTTTCATTGTGATCTTGTTAAAGGAGACTTAAAGGACAAATCTTTTAAACAGAGTC
ACAAGCCTCTCAGGTCTACAGACACATCCCAGAGGCATCTGGACAACACAAGAGCTGCCACCTC
CCCTGGAGTAGGGCAGTCAGCACCTGGCACCAGGAAGGAGATTGTGCCCAAGTGCAATGGCTCC
CTAGTCAAAGTGCCTACAACACCTGCCAGCCCAGTGAAAAGCTGGGGAGGATTCCGGATTCCAA
AGAAGGGGGAACGGCAGCAGCAAGGAGAAGCCCATGATGGGGCCTGCCACCAGCACTCAGACTG
CTCCCATCTGGGTATAAGCCGAGCTCCAGCCAAGGAGAGATCGAAGAGCAGGTTAAGAACTGAC
AGTGAGAACGATGGTTACGCCCCTGATGGGGAAATGAGTGACTCAGAAAGCGAGGCATCAGAGA
AGAAATGTATCCATGCCAGCAGCACCATCAGCAGGAGGACAGATATCATCAGGAGAAGCATCTT
GGCCTCTTGATGAAACAGCCGGTGTGGAAGCATATGTTGCCATGTGCTGAGGAGAGCTCTGATA
TGGGGGCAAGCAAAAACCCATTGTTTCTGAGCTCCACAAACAGATTTTCTTGCAATTCAGATTG
AATTTTTTTTCCAGTCATTTATAAATCATTGTGAGAAGTTTGTGTTATTTGCAACTTGTTGAGG
AAACAGAAGAGTAGATTGTAACCATAAGACACTAAGATTAGAACCTGAACTAAACACTAAGAAA
ACAAATGAAGTAACTTTACAGAGGGGGCCAGGCTTGAATAGTATTATTGCCCTCTACATTTTCC
CCAAAGCACAAACTCTTGAATACTCTAGCAGAATCATAGAATTCTGTGTAGTGAATAAGTCCTA
TTTATAGAAGCCCTCATGTACCATTTATAGCCCACAGAGCTTATTTTCTAGGAATGGTAAATGC
TGACAGCATTTGGCTCCCAGGCTGTGTGGTTGTGAGTAGCTGAGGCTCAGAAACTTGAGCAACA
CTGGGATCTTGCACATGTGGCATCCAGGGGAAGAGTTTACACAACAGGCACTGCTGGAAGGCTG
GAGGAGCAGAGCTGCTGCAGTGAGATTTAGGGCTTGTGTAGCGAGGTCCTGAAGCCCTGAGTGG
GCTGTGGACATAGGACGGGTAGAGAAAAAGTTGTCAAGAAAGTTTTGTGAGAAAGGGCAGCTGA
GGCCCAGGTGTTATTAGTCCGCTTGACCTTCCTCTTTCCTAACTGCTGGCCTTTGGACCCAAAT
GGGATTCCCCTGGCTACTGCCAGTACTTAGCCATCTGGCTTCCAATAATACAGTGGTTATTCGA
GTTCAAGTGATGAACTTCAGACTTTGGTGACTCTCACTCTGCAGAGTCAACCACTAGTACATAT
TTGGGAAATCCAGGCTTCCACCATGAGTGGATTCCTTAAGCAAAAGGAAAAAAAGAAGCAAAAC
AGGTTATATTTTAAAACATAGAAAGGCAATAAGTTGCATCAAGGTTATACAGGAAAGAAGTCAA
AATGTATCCTTGAATAGGTTTCTGGAGTTGGAATAGGTTTCTAAACTCTTGATTTGTAACTTGG
ACTTTCGAATTGCATATGGCAATAATTAGTAAGTTATCAGCAATAATAAATTTAGCATTAAATT
TGAGTATAATGTTCTGTTTTTGCACTCCTCATATAGTGCATATGTATTCAGACAAGTGGATAGT
GTTAAAGTCCTGTTATTTTCTTTGGAATTCAATGTAGTTGTGAATCAAATTTAAGAGAAGGCAA
GTTTCAGTAGCAATGAGATTTAGAATTAAGGGCATTTGGAGTAAGCCCGGTTTCCCCGAAATTA
CCCTTAGTTTATTAATATCAATGTTCAGATTCCTGATTCATTTATACATCTGTTTCCATGTGGC
AGGGACATTCTGATAATTAATGAGCAATGTTTTGAATTTGTAGAAGCTTTCAAGTCTTCCAGAT
GATCGTCAACAACAGAAAAGGCTTATTGAATTCCATCTTGCTATGCAAGTTTTATCAGATGATC
AAATGACAGATCTGATGCATCTCATTGTATGTATGACATTTTCAAACCAAGTCTTAACTTCTCA
AGTACATTGTAGTAGCTAATTCAGGGGAGGGGAAAGGATGACCCAGGTTTTAGATTGACTATTT
TTTGAGCTATGGAGCTCCTTTGAGACTGCTGTCCAGATCAGCTTGTTGCTACCAGTATTAGAAG
ATTTTTAGGAGTCCAAGTTGTACTTTTGCTTGTAGCCTAATTTAAAAATGAGATGTTTTGCATA
TGAGCAAAACCCTTGTGCTGGATACAGGAAAAGGCTGGACCCTTATCTAGTTATCTTTTGATAA
CAGCAACAGCTCTGGTGAGATAGGATTTATAGAGGGATAACCTGTGAAGCCATAGAAAGAAAAC
CTAAATTGATTTAGTGAGTGTACGGCCTCTCACCATTTTAGGAGGCACCAGATTCATTTGCACT
ATTAGGAATGCTAGTTTTGTGCAAAAATAATGCCTTACCTGTTTTCCCCCACATTTAGGTTGAA
AAGCTTTCAAATGTTCCAAGTTATGCTGAACCAAAAACAAAACAAAACAAAACAAAACAAAAAA
AACCCAACAAAATAGTAAAAAAAAAAAATAAAAAAAAATTTCCCCCACAAAAACTAAATAAAAA
AAAATAAAGCCCACATGTTTAATTACTGCTTTGAAATGCAAATGGTCTAGAGCACGGTTTCTGA
CAGTGTAATGATAGCTTTGTAAGTTAGTTTCATGTCATGCTGGGAACTCTGTATGAGGTGGCCA
CAAGCAGCCACAGTCCACCTACCCACTTGCATTCTATTAGTATTGAGCTTTTTTGTTTGTTTGT
TCTTTTGAATCTTCCTTGTGCATCCTGACCAAGAAATATCTTTGATTATGATCAATGTATTATG
TCAAAATGTAGGCTAGTTGAACTTTTGTAAAGTTGCCTGGAATGTCATTTGTTAGGTTATAAAC
AAAAATTTAAATGAAGGGTTTTATGTGTTGTGTACAAATCTTAATTATTTTAAAATGGACAGAC
TCGTCATTACATTTGTAACCTTGTACAGAGGATTTTTCACTATGTGCCTAGCTTGGTGTCCATT
CAACTAAAATTGAAAAAAAAAAGGTGCATGAAGAGTTAAAATCAGAAGTTAAACAAAGTCTATG
TAGAGATGACTATTTTATATTACATGGCCCAATCCTGTATTTATTTCTATCCCCTTTTTGAAAG
TATTTATAAAACTAGTTGAAGACAGCTGTATTTTTTTGTTGAACTATTTAGTAGAATTTGTGCC
TTTTTGTCTGTATGTGAATAAATGCTGTACATTTTGCAATACA

hide sequence

RefSeq Acc Id:

XM_039102248 ⟹ XP_038958176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	126,501,099 - 126,524,252 (+)	NCBI
mRatBN7.2	2	124,574,983 - 124,596,361 (+)	NCBI

RefSeq Acc Id:

XM_063281777 ⟹ XP_063137847

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	126,501,099 - 126,524,252 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001401981	(Get FASTA)	NCBI Sequence Viewer
	XP_006232363	(Get FASTA)	NCBI Sequence Viewer
	XP_006232365	(Get FASTA)	NCBI Sequence Viewer
	XP_006232366	(Get FASTA)	NCBI Sequence Viewer
	XP_008759150	(Get FASTA)	NCBI Sequence Viewer
	XP_038958176	(Get FASTA)	NCBI Sequence Viewer
	XP_063137847	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM01351	(Get FASTA)	NCBI Sequence Viewer
	EDM01352	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018872
	ENSRNOP00000018872.7
	ENSRNOP00000088679.1
	ENSRNOP00000090026
	ENSRNOP00000090026.1
	ENSRNOP00000090751.2
	ENSRNOP00000105202
	ENSRNOP00000105202.1

RefSeq Acc Id:	XP_006232365 ⟸ XM_006232303
- Peptide Label:	isoform X2
- UniProtKB:	D3ZM64 (UniProtKB/TrEMBL), A6II53 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKRGRLPSSSEDSDDNGSLSTTWSQHSRSQHGRSTCSRHEDRKPSEVFRTDLITAMKLHDSYQL NPDEYYVLADPWRQEWEKGVQVPVSPGTIPQPVARVVSEEKSLMFIRPKKYIASSGSEPPELGY VDIRTLADSVCRYDLNDMDAAWLELTNEEFKEMGMPELDEYTMERVLEEFEQRCYDNMNHAIET EEGLGIEYDEDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACYGILKVPEGSWLCRTCALGVQP KCLLCPKKGGAMKPTRSGTKWVHVSCALWIPEVSIGSPEKMEPITKVSHIPSSRWALVCSLCNE KFGASIQCSVKNCRTAFHVTCAFDRGLEMKTILAENDEVKFKSYCPKHSSHRKPEESLGEGAAQ ENGATECSPQSPLEPFASLEQNREEAHRVSVRKQKLQQLEDEFYTFVNLLDVARALRLPEEVVD FLYQYWKLKRKINFNKPLITPKKDEEDNLAKREQDVLFRRLQLFTHLRQDLERVRNLTYMVTRR EKIKRSVCKVQEQIFSLYAKLLEQGKVSGVPSSCSSLENMLLFNSPSVGPNVPKIEDLKWHSAF FRKQMGTNLVHSLKKSHKRDALQNSSGTEGKTLLKQPGLSGRREGSGVPESLLSFEKTFAEARL ISSAQQKNGVVTPDHGKRRDNRFHCDLVKGDLKDKSFKQSHKPLRSTDTSQRHLDNTRAATSPG VGQSAPGTRKEIVPKCNGSLVKVPTTPASPVKSWGGFRIPKKGERQQQGEAHDGACHQHSDCSH LGISRAPAKERSKSRLRTDSENDGYAPDGEMSDSESEASEKKCIHASSTISRRTDIIRRSILAS hide sequence

RefSeq Acc Id:	XP_006232366 ⟸ XM_006232304
- Peptide Label:	isoform X2
- UniProtKB:	D3ZM64 (UniProtKB/TrEMBL), A6II53 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKRGRLPSSSEDSDDNGSLSTTWSQHSRSQHGRSTCSRHEDRKPSEVFRTDLITAMKLHDSYQL NPDEYYVLADPWRQEWEKGVQVPVSPGTIPQPVARVVSEEKSLMFIRPKKYIASSGSEPPELGY VDIRTLADSVCRYDLNDMDAAWLELTNEEFKEMGMPELDEYTMERVLEEFEQRCYDNMNHAIET EEGLGIEYDEDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACYGILKVPEGSWLCRTCALGVQP KCLLCPKKGGAMKPTRSGTKWVHVSCALWIPEVSIGSPEKMEPITKVSHIPSSRWALVCSLCNE KFGASIQCSVKNCRTAFHVTCAFDRGLEMKTILAENDEVKFKSYCPKHSSHRKPEESLGEGAAQ ENGATECSPQSPLEPFASLEQNREEAHRVSVRKQKLQQLEDEFYTFVNLLDVARALRLPEEVVD FLYQYWKLKRKINFNKPLITPKKDEEDNLAKREQDVLFRRLQLFTHLRQDLERVRNLTYMVTRR EKIKRSVCKVQEQIFSLYAKLLEQGKVSGVPSSCSSLENMLLFNSPSVGPNVPKIEDLKWHSAF FRKQMGTNLVHSLKKSHKRDALQNSSGTEGKTLLKQPGLSGRREGSGVPESLLSFEKTFAEARL ISSAQQKNGVVTPDHGKRRDNRFHCDLVKGDLKDKSFKQSHKPLRSTDTSQRHLDNTRAATSPG VGQSAPGTRKEIVPKCNGSLVKVPTTPASPVKSWGGFRIPKKGERQQQGEAHDGACHQHSDCSH LGISRAPAKERSKSRLRTDSENDGYAPDGEMSDSESEASEKKCIHASSTISRRTDIIRRSILAS hide sequence

RefSeq Acc Id:	XP_006232363 ⟸ XM_006232301
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AB02 (UniProtKB/TrEMBL), A6II53 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASCDRGCLLSPGEIMKRGRLPSSSEDSDDNGSLSTTWSQHSRSQHGRSTCSRHEDRKPSEVFR TDLITAMKLHDSYQLNPDEYYVLADPWRQEWEKGVQVPVSPGTIPQPVARVVSEEKSLMFIRPK KYIASSGSEPPELGYVDIRTLADSVCRYDLNDMDAAWLELTNEEFKEMGMPELDEYTMERVLEE FEQRCYDNMNHAIETEEGLGIEYDEDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACYGILKVP EGSWLCRTCALGVQPKCLLCPKKGGAMKPTRSGTKWVHVSCALWIPEVSIGSPEKMEPITKVSH IPSSRWALVCSLCNEKFGASIQCSVKNCRTAFHVTCAFDRGLEMKTILAENDEVKFKSYCPKHS SHRKPEESLGEGAAQENGATECSPQSPLEPFASLEQNREEAHRVSVRKQKLQQLEDEFYTFVNL LDVARALRLPEEVVDFLYQYWKLKRKINFNKPLITPKKDEEDNLAKREQDVLFRRLQLFTHLRQ DLERVRNLTYMVTRREKIKRSVCKVQEQIFSLYAKLLEQGKVSGVPSSCSSLENMLLFNSPSVG PNVPKIEDLKWHSAFFRKQMGTNLVHSLKKSHKRDALQNSSGTEGKTLLKQPGLSGRREGSGVP ESLLSFEKTFAEARLISSAQQKNGVVTPDHGKRRDNRFHCDLVKGDLKDKSFKQSHKPLRSTDT SQRHLDNTRAATSPGVGQSAPGTRKEIVPKCNGSLVKVPTTPASPVKSWGGFRIPKKGERQQQG EAHDGACHQHSDCSHLGISRAPAKERSKSRLRTDSENDGYAPDGEMSDSESEASEKKCIHASST ISRRTDIIRRSILAS hide sequence

RefSeq Acc Id:	XP_008759150 ⟸ XM_008760928
- Peptide Label:	isoform X2
- UniProtKB:	D3ZM64 (UniProtKB/TrEMBL), A6II53 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKRGRLPSSSEDSDDNGSLSTTWSQHSRSQHGRSTCSRHEDRKPSEVFRTDLITAMKLHDSYQL NPDEYYVLADPWRQEWEKGVQVPVSPGTIPQPVARVVSEEKSLMFIRPKKYIASSGSEPPELGY VDIRTLADSVCRYDLNDMDAAWLELTNEEFKEMGMPELDEYTMERVLEEFEQRCYDNMNHAIET EEGLGIEYDEDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACYGILKVPEGSWLCRTCALGVQP KCLLCPKKGGAMKPTRSGTKWVHVSCALWIPEVSIGSPEKMEPITKVSHIPSSRWALVCSLCNE KFGASIQCSVKNCRTAFHVTCAFDRGLEMKTILAENDEVKFKSYCPKHSSHRKPEESLGEGAAQ ENGATECSPQSPLEPFASLEQNREEAHRVSVRKQKLQQLEDEFYTFVNLLDVARALRLPEEVVD FLYQYWKLKRKINFNKPLITPKKDEEDNLAKREQDVLFRRLQLFTHLRQDLERVRNLTYMVTRR EKIKRSVCKVQEQIFSLYAKLLEQGKVSGVPSSCSSLENMLLFNSPSVGPNVPKIEDLKWHSAF FRKQMGTNLVHSLKKSHKRDALQNSSGTEGKTLLKQPGLSGRREGSGVPESLLSFEKTFAEARL ISSAQQKNGVVTPDHGKRRDNRFHCDLVKGDLKDKSFKQSHKPLRSTDTSQRHLDNTRAATSPG VGQSAPGTRKEIVPKCNGSLVKVPTTPASPVKSWGGFRIPKKGERQQQGEAHDGACHQHSDCSH LGISRAPAKERSKSRLRTDSENDGYAPDGEMSDSESEASEKKCIHASSTISRRTDIIRRSILAS hide sequence

Ensembl Acc Id:

ENSRNOP00000018872 ⟸ ENSRNOT00000018872

RefSeq Acc Id:	XP_038958176 ⟸ XM_039102248
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6GJ46 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000090026 ⟸ ENSRNOT00000098865

Ensembl Acc Id:

ENSRNOP00000090751 ⟸ ENSRNOT00000120008

Ensembl Acc Id:

ENSRNOP00000088679 ⟸ ENSRNOT00000100298

RefSeq Acc Id:	NP_001401981 ⟸ NM_001415052
- UniProtKB:	D3ZM64 (UniProtKB/TrEMBL), A6II53 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137847 ⟸ XM_063281777
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6GJ46 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000105202 ⟸ ENSRNOT00000172515

Protein Domains

PHD-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZM64-F1-model_v2	AlphaFold	D3ZM64	1-828	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691309

Promoter ID:

EPDNEW_R1834

Type:

initiation region

Name:

Jade1_1

Description:

jade family PHD finger 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	128,461,171 - 128,461,231	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306920	AgrOrtholog
BioCyc Gene	G2FUF-53233	BioCyc
Ensembl Genes	ENSRNOG00000014066	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018872	ENTREZGENE
	ENSRNOT00000018872.8	UniProtKB/TrEMBL
	ENSRNOT00000098865	ENTREZGENE
	ENSRNOT00000098865.2	UniProtKB/TrEMBL
	ENSRNOT00000100298.2	UniProtKB/TrEMBL
	ENSRNOT00000120008.2	UniProtKB/TrEMBL
	ENSRNOT00000172515	ENTREZGENE
	ENSRNOT00000172515.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
InterPro	Enhancer_of_polycomb-like	UniProtKB/TrEMBL
	EPHD	UniProtKB/TrEMBL
	Histone_Mod_Regulator	UniProtKB/TrEMBL
	Jade-1_PHD	UniProtKB/TrEMBL
	Zinc_finger_PHD-type_CS	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
NCBI Gene	310352	ENTREZGENE
PANTHER	PHD FINGER PROTEINS	UniProtKB/TrEMBL
	PROTEIN JADE-1	UniProtKB/TrEMBL
Pfam	EPL1	UniProtKB/TrEMBL
	PHD_2	UniProtKB/TrEMBL
	zf-HC5HC2H_2	UniProtKB/TrEMBL
PhenoGen	Jade1	PhenoGen
PROSITE	EPHD	UniProtKB/TrEMBL
	ZF_PHD_1	UniProtKB/TrEMBL
	ZF_PHD_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014066	RatGTEx
SMART	PHD	UniProtKB/TrEMBL
Superfamily-SCOP	FYVE_PHD_ZnF	UniProtKB/TrEMBL
UniProt	A0A8I6A9X2_RAT	UniProtKB/TrEMBL
	A0A8I6AB02	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GJ46	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L5Z6_RAT	UniProtKB/TrEMBL
	A6II53	ENTREZGENE, UniProtKB/TrEMBL
	D3ZM64	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-11-22	Jade1	jade family PHD finger 1	Phf17	PHD finger protein 17	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Phf17	PHD finger protein 17	Phf17_predicted	PHD finger protein 17 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Phf17_predicted	PHD finger protein 17 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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