Vps26c (VPS26 endosomal protein sorting factor C) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Vps26c (VPS26 endosomal protein sorting factor C) Rattus norvegicus
Analyze
Symbol: Vps26c
Name: VPS26 endosomal protein sorting factor C
RGD ID: 1306879
Description: Predicted to be involved in endocytic recycling and intracellular protein transport. Predicted to be active in endosome. Orthologous to human VPS26C (VPS26 endosomal protein sorting factor C); INTERACTS WITH 2,4-dinitrotoluene; aconitine; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Down syndrome critical region 3; Down syndrome critical region gene 3; Down syndrome critical region protein 3; Dscr3; DSCR3 arrestin fold containing; LOC360703; vacuolar protein sorting-associated protein 26C
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,283,764 - 47,311,105 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1147,262,071 - 47,311,045 (-)EnsemblGRCr8
mRatBN7.21133,813,467 - 33,841,883 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,792,389 - 33,841,447 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1142,471,424 - 42,498,809 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,142,782 - 35,170,167 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01134,288,689 - 34,315,985 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01134,764,053 - 34,792,446 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1134,764,721 - 34,791,993 (-)Ensemblrn6Rnor6.0
Rnor_5.01138,355,282 - 38,384,372 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41134,778,324 - 34,803,052 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1134,609,038 - 34,636,294 (+)NCBICelera
RGSC_v3.11134,834,415 - 34,859,649 (-)NCBI
Cytogenetic Map11q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endosome  (IBA,IEA)
protein-containing complex  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16780588   PMID:28892079  


Genomics

Comparative Map Data
Vps26c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,283,764 - 47,311,105 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1147,262,071 - 47,311,045 (-)EnsemblGRCr8
mRatBN7.21133,813,467 - 33,841,883 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,792,389 - 33,841,447 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1142,471,424 - 42,498,809 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,142,782 - 35,170,167 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01134,288,689 - 34,315,985 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01134,764,053 - 34,792,446 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1134,764,721 - 34,791,993 (-)Ensemblrn6Rnor6.0
Rnor_5.01138,355,282 - 38,384,372 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41134,778,324 - 34,803,052 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1134,609,038 - 34,636,294 (+)NCBICelera
RGSC_v3.11134,834,415 - 34,859,649 (-)NCBI
Cytogenetic Map11q11NCBI
VPS26C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382137,223,420 - 37,268,108 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2137,223,417 - 37,267,919 (-)Ensemblhg38GRCh38
GRCh372138,595,721 - 38,640,409 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362137,517,596 - 37,561,703 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342137,517,595 - 37,561,703NCBI
Celera2123,794,111 - 23,838,219 (-)NCBICelera
Cytogenetic Map21q22.13NCBI
HuRef2124,071,503 - 24,115,290 (-)NCBIHuRef
CHM1_12138,157,446 - 38,201,548 (-)NCBICHM1_1
T2T-CHM13v2.02135,605,645 - 35,650,315 (-)NCBIT2T-CHM13v2.0
Vps26c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391694,298,583 - 94,327,488 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1694,298,642 - 94,327,689 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381694,497,724 - 94,526,629 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1694,497,783 - 94,526,830 (-)Ensemblmm10GRCm38
MGSCv371694,719,331 - 94,748,236 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361694,606,586 - 94,635,241 (-)NCBIMGSCv36mm8
Celera1695,585,402 - 95,614,447 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1655.23NCBI
Vps26c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540736,357,366 - 36,381,904 (-)Ensembl
ChiLan1.0NW_00495540736,357,366 - 36,381,904 (-)NCBIChiLan1.0ChiLan1.0
VPS26C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22233,337,669 - 33,384,380 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12128,197,833 - 28,243,183 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02123,587,160 - 23,632,510 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12136,941,462 - 36,986,220 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2136,941,462 - 36,986,228 (-)EnsemblpanPan2panpan1.1
PanPan1.1 Ensembl614,374,777 - 14,375,376 (-)EnsemblpanPan2panpan1.1
VPS26C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13132,344,908 - 32,427,741 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3132,382,686 - 32,427,650 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3131,432,370 - 31,488,852 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03131,675,571 - 31,732,940 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3131,687,734 - 31,732,850 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13131,554,194 - 31,598,938 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03131,555,072 - 31,612,211 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03132,058,125 - 32,102,623 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Vps26c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497131,902,300 - 31,942,453 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365005,525,522 - 5,566,073 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365005,525,358 - 5,565,523 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS26C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13200,869,167 - 200,926,108 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113200,869,161 - 200,927,004 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213210,991,594 - 211,046,845 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VPS26C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1281,187,163 - 81,231,780 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl281,189,294 - 81,231,330 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660548,990,300 - 9,078,100 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps26c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474526,377,280 - 26,408,907 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474526,377,806 - 26,408,595 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Vps26c
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1450,120,263 - 50,147,850 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Vps26c
104 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:116
Interacting mature miRNAs:141
Transcripts:ENSRNOT00000002284
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11381815448818154Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)113532319955805892Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)112995899657754989Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)112631803155806125Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
RH134666  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21133,814,210 - 33,814,423 (+)MAPPERmRatBN7.2
mRatBN7.2319,984,042 - 19,984,255 (+)MAPPERmRatBN7.2
Rnor_6.0315,968,500 - 15,968,712NCBIRnor6.0
Rnor_6.01134,764,797 - 34,765,009NCBIRnor6.0
Rnor_5.0321,270,085 - 21,270,297UniSTSRnor5.0
Rnor_5.01138,356,026 - 38,356,238UniSTSRnor5.0
RGSC_v3.4315,866,669 - 15,866,881UniSTSRGSC3.4
Celera1134,636,004 - 34,636,216UniSTS
Celera314,695,293 - 14,695,505UniSTS
Cytogenetic Map11q11UniSTS
RH144357  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2383,103,605 - 83,103,713 (+)MAPPERmRatBN7.2
mRatBN7.21133,825,530 - 33,827,086 (+)MAPPERmRatBN7.2
Rnor_6.01134,776,114 - 34,777,667NCBIRnor6.0
Rnor_6.0385,809,003 - 85,809,110NCBIRnor6.0
Rnor_5.01138,367,319 - 38,368,872UniSTSRnor5.0
Rnor_5.0392,495,960 - 92,496,067UniSTSRnor5.0
RGSC_v3.41134,787,172 - 34,788,725UniSTSRGSC3.4
RGSC_v3.4381,813,127 - 81,813,234UniSTSRGSC3.4
Celera382,261,357 - 82,261,464UniSTS
Celera1134,623,361 - 34,624,897UniSTS
RH 3.4 Map3657.4UniSTS
Cytogenetic Map11q11UniSTS
Cytogenetic Map3q31UniSTS
BE117087  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21133,819,326 - 33,819,476 (+)MAPPERmRatBN7.2
Rnor_6.01134,769,912 - 34,770,061NCBIRnor6.0
Rnor_5.01138,361,141 - 38,361,290UniSTSRnor5.0
RGSC_v3.41134,779,488 - 34,779,637UniSTSRGSC3.4
Celera1134,630,952 - 34,631,101UniSTS
RH 3.4 Map11255.01UniSTS
Cytogenetic Map11q11UniSTS
BI274964  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21133,813,724 - 33,813,919 (+)MAPPERmRatBN7.2
Rnor_6.01134,764,311 - 34,764,505NCBIRnor6.0
Rnor_5.01138,355,540 - 38,355,734UniSTSRnor5.0
Celera1134,636,508 - 34,636,702UniSTS
RH 3.4 Map11254.91UniSTS
Cytogenetic Map11q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
23 13 79 201 91 90 59 129 59 6 439 246 17 184 103 121 31 34 34

Sequence


Ensembl Acc Id: ENSRNOT00000002284   ⟹   ENSRNOP00000002284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1147,283,771 - 47,311,045 (-)Ensembl
mRatBN7.2 Ensembl1133,814,136 - 33,841,447 (-)Ensembl
Rnor_6.0 Ensembl1134,764,721 - 34,791,993 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112054   ⟹   ENSRNOP00000088383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1147,283,771 - 47,311,045 (-)Ensembl
mRatBN7.2 Ensembl1133,814,136 - 33,841,447 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114273   ⟹   ENSRNOP00000088004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1147,262,071 - 47,311,045 (-)Ensembl
mRatBN7.2 Ensembl1133,792,389 - 33,841,405 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118712   ⟹   ENSRNOP00000096938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1133,814,131 - 33,841,447 (-)Ensembl
RefSeq Acc Id: NM_001108316   ⟹   NP_001101786
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,283,769 - 47,311,045 (-)NCBI
mRatBN7.21133,814,133 - 33,841,413 (-)NCBI
Rnor_6.01134,764,719 - 34,791,993 (-)NCBI
Rnor_5.01138,355,282 - 38,384,372 (-)NCBI
RGSC_v3.41134,778,324 - 34,803,052 (-)RGD
Celera1134,609,038 - 34,636,294 (+)RGD
Sequence:
RefSeq Acc Id: XM_006248072   ⟹   XP_006248134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,283,764 - 47,311,105 (-)NCBI
mRatBN7.21133,813,467 - 33,841,883 (-)NCBI
Rnor_6.01134,764,053 - 34,792,446 (-)NCBI
Rnor_5.01138,355,282 - 38,384,372 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008768583   ⟹   XP_008766805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,283,764 - 47,311,105 (-)NCBI
mRatBN7.21133,813,467 - 33,841,866 (-)NCBI
Rnor_6.01134,764,053 - 34,792,445 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088476   ⟹   XP_038944404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,283,764 - 47,311,105 (-)NCBI
mRatBN7.21133,813,467 - 33,841,865 (-)NCBI
RefSeq Acc Id: XM_039088477   ⟹   XP_038944405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,288,889 - 47,311,105 (-)NCBI
mRatBN7.21133,819,252 - 33,841,863 (-)NCBI
RefSeq Acc Id: XM_063270630   ⟹   XP_063126700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,283,764 - 47,311,105 (-)NCBI
RefSeq Acc Id: NP_001101786   ⟸   NM_001108316
- UniProtKB: B1H223 (UniProtKB/TrEMBL),   A0A8I6A9V7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248134   ⟸   XM_006248072
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A639 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766805   ⟸   XM_008768583
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A9V7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002284   ⟸   ENSRNOT00000002284
RefSeq Acc Id: XP_038944404   ⟸   XM_039088476
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038944405   ⟸   XM_039088477
- Peptide Label: isoform X5
- UniProtKB: A6KPW2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096938   ⟸   ENSRNOT00000118712
Ensembl Acc Id: ENSRNOP00000088004   ⟸   ENSRNOT00000114273
Ensembl Acc Id: ENSRNOP00000088383   ⟸   ENSRNOT00000112054
RefSeq Acc Id: XP_063126700   ⟸   XM_063270630
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PU42-F1-model_v2 AlphaFold E9PU42 1-297 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698080
Promoter ID:EPDNEW_R8605
Type:initiation region
Name:Dscr3_1
Description:DSCR3 arrestin fold containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01134,791,987 - 34,792,047EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306879 AgrOrtholog
BioCyc Gene G2FUF-21763 BioCyc
Ensembl Genes ENSRNOG00000001681 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002284 ENTREZGENE
  ENSRNOT00000002284.8 UniProtKB/TrEMBL
  ENSRNOT00000112054 ENTREZGENE
  ENSRNOT00000112054.2 UniProtKB/TrEMBL
  ENSRNOT00000114273.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.640 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7444837 IMAGE-MGC_LOAD
InterPro Arrestin_C UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  Vps26-related UniProtKB/TrEMBL
KEGG Report rno:360703 UniProtKB/TrEMBL
MGC_CLONE MGC:187512 IMAGE-MGC_LOAD
NCBI Gene 360703 ENTREZGENE
PANTHER PTHR12233 UniProtKB/TrEMBL
Pfam Vps26 UniProtKB/TrEMBL
PhenoGen Vps26c PhenoGen
RatGTEx ENSRNOG00000001681 RatGTEx
Superfamily-SCOP SSF81296 UniProtKB/TrEMBL
UniProt A0A8I6A639 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9V7 ENTREZGENE, UniProtKB/TrEMBL
  A6KPW2 ENTREZGENE, UniProtKB/TrEMBL
  B1H223 ENTREZGENE, UniProtKB/TrEMBL
  E9PU42_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-01-31 Vps26c  VPS26 endosomal protein sorting factor C  Dscr3  DSCR3 arrestin fold containing  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-19 Dscr3  DSCR3 arrestin fold containing  Dscr3  Down syndrome critical region 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-11-19 Dscr3  Down syndrome critical region 3  Dscr3  Down syndrome critical region gene 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Dscr3  Down syndrome critical region gene 3   Dscr3_predicted  Down syndrome critical region gene 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Dscr3_predicted  Down syndrome critical region gene 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED