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Gene: Rita1 (RBPJ interacting and tubulin associated 1) Rattus norvegicus

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Symbol:

Rita1

Name:

RBPJ interacting and tubulin associated 1

RGD ID:

1306772

Description:

Predicted to enable tubulin binding activity. Predicted to be involved in negative regulation of Notch signaling pathway; neurogenesis; and nuclear export. Predicted to be located in centrosome. Predicted to be active in cytoplasm and nucleus. Orthologous to human RITA1 (RBPJ interacting and tubulin associated 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; atrazine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC288683; LOC288683; RBPJ-interacting and tubulin-associated protein; RBPJ-interacting and tubulin-associated protein 1; RGD1306772; Rita; similar to RIKEN cDNA 1110008J03

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	41,610,713 - 41,614,545 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	41,610,877 - 41,614,541 (+)	Ensembl				GRCr8
mRatBN7.2	12	35,950,090 - 35,953,960 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	35,950,373 - 35,953,960 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	37,130,007 - 37,133,588 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	37,741,225 - 37,744,806 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	36,793,688 - 36,797,269 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	41,484,970 - 41,488,889 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	41,486,076 - 41,488,885 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	43,343,312 - 43,346,990 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	37,117,951 - 37,121,532 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	37,611,782 - 37,615,363 (+)	NCBI		Celera
RGSC_v3.1	12	36,981,300 - 36,984,916 (+)	NCBI
Cytogenetic Map	12	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

atrazine (EXP)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

Dibutyl phosphate (ISO)

formaldehyde (ISO)

FR900359 (ISO)

menadione (ISO)

paracetamol (EXP)

rac-lactic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thiram (ISO)

tributylstannane (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of Notch signaling pathway (IBA,ISO,ISS)

nervous system development (IEA)

neurogenesis (ISS)

Notch signaling pathway (IEA)

nuclear export (IBA,IEA,ISO)

Cellular Component

centrosome (IEA,ISO,ISS)

cytoplasm (IBA,IEA,ISO,ISS)

cytosol (ISO)

nucleoplasm (ISO)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

protein binding (ISO)

tubulin binding (IBA,IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:21102556

Genomics

Comparative Map Data

Rita1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	41,610,713 - 41,614,545 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	41,610,877 - 41,614,541 (+)	Ensembl				GRCr8
mRatBN7.2	12	35,950,090 - 35,953,960 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	35,950,373 - 35,953,960 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	37,130,007 - 37,133,588 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	37,741,225 - 37,744,806 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	36,793,688 - 36,797,269 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	41,484,970 - 41,488,889 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	41,486,076 - 41,488,885 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	43,343,312 - 43,346,990 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	37,117,951 - 37,121,532 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	37,611,782 - 37,615,363 (+)	NCBI		Celera
RGSC_v3.1	12	36,981,300 - 36,984,916 (+)	NCBI
Cytogenetic Map	12	q16	NCBI

RITA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	113,185,721 - 113,192,368 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	113,185,045 - 113,193,653 (+)	Ensembl			hg38	GRCh38
GRCh37	12	113,623,526 - 113,630,173 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	112,107,938 - 112,114,502 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	113,250,379 - 113,256,943 (+)	NCBI		Celera
Cytogenetic Map	12	q24.13	NCBI
HuRef	12	110,636,269 - 110,642,833 (+)	NCBI		HuRef
CHM1_1	12	113,591,820 - 113,598,401 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	113,162,366 - 113,168,991 (+)	NCBI		T2T-CHM13v2.0

Rita1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	120,747,123 - 120,750,654 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	120,732,370 - 120,750,654 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	120,609,058 - 120,612,589 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	120,594,305 - 120,612,589 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	121,059,072 - 121,062,578 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	120,869,680 - 120,873,186 (-)	NCBI		MGSCv36	mm8
Celera	5	117,694,263 - 117,697,769 (-)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	60.63	NCBI

Rita1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	9,510,332 - 9,513,665 (+)	Ensembl
ChiLan1.0	NW_004955482	9,510,070 - 9,514,118 (+)	NCBI	ChiLan1.0	ChiLan1.0

RITA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	121,274,691 - 121,281,322 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	121,270,940 - 121,280,884 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	110,790,401 - 110,797,343 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	114,173,173 - 114,180,288 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	114,173,173 - 114,180,288 (+)	Ensembl			panPan2	panpan1.1

RITA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	10,568,426 - 10,573,395 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	10,568,941 - 10,573,037 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	10,690,570 - 10,695,845 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	10,812,573 - 10,817,852 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	10,813,055 - 10,817,852 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	10,786,474 - 10,791,752 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	10,849,142 - 10,854,409 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	10,898,060 - 10,903,334 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rita1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	148,579,710 - 148,585,901 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936668	3,079,386 - 3,088,587 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936668	3,078,600 - 3,084,790 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RITA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	38,668,118 - 38,674,366 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	38,668,086 - 38,674,131 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	41,123,394 - 41,129,523 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RITA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	108,437,219 - 108,444,603 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	108,437,297 - 108,445,744 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	136,653,726 - 136,660,979 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rita1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	19,260,159 - 19,264,786 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	19,260,823 - 19,264,749 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rita1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	33,215,780 - 33,218,507 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rita1
19 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	203
Count of miRNA genes:	141
Interacting mature miRNAs:	158
Transcripts:	ENSRNOT00000057242
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37764145	51558799	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	34243475	43352593	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

AI599956

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	35,953,595 - 35,953,735 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	41,488,525 - 41,488,664	NCBI	Rnor6.0
Rnor_5.0	12	43,346,626 - 43,346,765	UniSTS	Rnor5.0
RGSC_v3.4	12	37,121,168 - 37,121,307	UniSTS	RGSC3.4
Celera	12	37,614,999 - 37,615,138	UniSTS
RH 3.4 Map	12	645.6	UniSTS
Cytogenetic Map	12	q16	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	90	59	6	353	190	11	139	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001044226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006249384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC112384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000057242 ⟹ ENSRNOP00000054067

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	41,610,877 - 41,614,541 (+)	Ensembl
mRatBN7.2 Ensembl	12	35,950,373 - 35,953,960 (+)	Ensembl
Rnor_6.0 Ensembl	12	41,486,076 - 41,488,885 (+)	Ensembl

RefSeq Acc Id:

NM_001044226 ⟹ NP_001037691

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	41,610,964 - 41,614,545 (+)	NCBI
mRatBN7.2	12	35,950,379 - 35,953,960 (+)	NCBI
Rnor_6.0	12	41,485,308 - 41,488,889 (+)	NCBI
Rnor_5.0	12	43,343,312 - 43,346,990 (+)	NCBI
RGSC_v3.4	12	37,117,951 - 37,121,532 (+)	RGD
Celera	12	37,611,782 - 37,615,363 (+)	RGD

Sequence:

show sequence

CTATGCGGGCATTTGTGGCGAAGATTATGCTTGCTGGCCAGAGGTCCCAGTAGGAAAAGCTCCT
AGCATGAAATTCCCGGGACGCCTGCGCTTTCCGCTTTGTAAGCTGTCTGGTGTGTGCTACTCCG
CTGTTTGGAGCCTGAGTTGTAATTGGGGAAAATGGATTTAATCTGAAGGACCGGTTGGCGAGGA
CTAGAACGCACCACGCTTGCAAAGCGCTTTGCACAAGACAGGAGTGCCTGCTTAGCCTGCGGCA
TGCACAAAGCACGGGGTTCGAACCCATGCACCTCAGACGCCAGGCGGTCGTGCAGTTCTTCGTG
GGAAGTAGAAGCGGGAGGATCCGGAGTTAAAGGGAGCCCTGGAGGCTGAATCTGGCAGGCACAG
TAAATCCACTGGGCAGCCTGAAGACCCCGGTGGAGGTGGAACTGGCCCAGCGTCGGAATGCAGG
CACTCCACCTTCAGCACCGCAACCCGCGCAGCTACCGGGTCAAGGCCAGGGCATCCTATGTGGA
TGAGACCCTGTTTGGCAGCCCAACAGGAACCCGGCCAACTCTACCAGACTTTGACCCACCCTGG
GTGCAGAATTGTAACAGATCTAGAGGAGTGAGCCCAGGACCCCCGAAGGTCTCTCTGGCCAAGA
GAGACTGTGAGTCTCCCTCCTCCAGGGGCAGCACCCCAAATCTCACACCAAGGAAGAAAAACAA
ATACAGGTTGATTGGCCACACCCCATCCTACTGTGATGAGTCACTGTTTGGCTCCCGGCCACAG
GGCACCAGCAAGGAGAGGTCTCGGACAGCCGTGGAGGATGCGGCCAAGCTCCGGACCCTTTTCT
GGACCCCACCAGCCACCCCTAGGGGCAGCCACTCACCTCGCCCCAGGGAGACCCCACTTCGGGC
CATTCACCCAACTGGACCTCCCAGGACAGAGCCCAGAGTGGCCACAGGCTCCCAGATGGTGTCC
CGGGATGGGCTGGATGCTCCCCGCTCTCTGGGACAGAGGCGTTCCTATTCACTCACCCACCTAG
CTGTCCCCAGCACGGGTCATCCAGCTTCCACTGCCCCCCAGACCAATGGGCCTTGGAGTCCCCG
GCCTTACACATCAGGGGCGACTGTCCAGAGTCCCCTAGTCACTCGCAAGGTATGCTCAGGCAGT
GTTTCGGGGCCAACTACCCCTCAGCGAGGGGCCTGCCCCCAAAAGCCAAAGCCTCCTTGGAAAT
GACATTCTTACCAGGTAAGCCTTTGGCTCAAAGCCAGGACTCAAGCTCAGGTGTGGTCCTCTGG
AGACAATGGTCCCCAGGGCCTCCAAATGCTGGAGAAGCCTCCACGGGGCTCCATGGTAAGGATG
GGCCATATTTTCCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGCAGGGTATTTGG
GGTCCTTGAGATAGATGTCTCTGTAGCCATGTGTCAGCCTCCCGGCTTCTGCGTTGGTGCCAAG
CCCCACCCGGTTCCCTACAAAGGGTTCAGTTTCCACAGGGGTCTGAAGGTCTTAAGGGGTCCTG
GGCTGTGTGTGGACCCCAGGGGTGGGACCCGGGGAGACATTATTTTAATATTCATGTATTTATT
CCACGTATTAAATGTATTTGGATCGCCAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006249383 ⟹ XP_006249445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	41,610,713 - 41,614,545 (+)	NCBI
mRatBN7.2	12	35,950,090 - 35,953,960 (+)	NCBI
Rnor_6.0	12	41,485,185 - 41,488,889 (+)	NCBI
Rnor_5.0	12	43,343,312 - 43,346,990 (+)	NCBI

Sequence:

show sequence

GTGGAACGTACCATCAGCGCGAGGGCGGGATGTACCAGTGCGCAGGGGCGGGGCTTCACTCCTG
TTGCCCAGCAAGGGCTGTATGTGGGCGCGTGTCGCCGGGGCGCGGCTGCGGATTTTGTGCTATG
CGGGCATTTGTGGCGAAGATTATGCTTGCTGGCCAGAGGTCCCAGTAGGAAAAGCTCCTAGCAT
GAAATTCCCGGGACGCCTGCGCTTTCCGCTTTGTAAGCTGTCTGGTGTGTGCTACTCCGCTGTT
TGGAGCCTGAGTTGTAATTGGGGAAAATGGATTTAATCTGAAGGACCGGTTGGCGAGGACTAGA
ACGCACCACGCTTGCAAAGCGCTTTGCACAAGAAGACAGGAGTGCCTGCTTAGCCTGCGGCATG
CACAAAGCACGGGGTTCGAACCCATGCACCTCAGACGCCAGGCGGTCGTGCAGTTCTTCGTGGG
AAGTAGAAGCGGGAGGATCCGGAGTTAAAGGGAGCCCTGGAGGCTGAATCTGGCAGGCACAGTA
AATCCACTGGGCAGCCTGAAGACCCCGGTGGAGGTGGAACTGGCCCAGCGTCGGAATGCAGGCA
CTCCACCTTCAGCACCGCAACCCGCGCAGCTACCGGGTCAAGGCCAGGGCATCCTATGTGGATG
AGACCCTGTTTGGCAGCCCAACAGGAACCCGGCCAACTCTACCAGACTTTGACCCACCCTGGGT
GCAGAATTGTAACAGATCTAGAGGAGTGAGCCCAGGACCCCCGAAGGTCTCTCTGGCCAAGAGA
GACTGTGAGTCTCCCTCCTCCAGGGGCAGCACCCCAAATCTCACACCAAGGAAGAAAAACAAAT
ACAGGTTGATTGGCCACACCCCATCCTACTGTGATGAGTCACTGTTTGGCTCCCGGCCACAGGG
CACCAGCAAGGAGAGGTCTCGGACAGCCGTGGAGGATGCGGCCAAGCTCCGGACCCTTTTCTGG
ACCCCACCAGCCACCCCTAGGGGCAGCCACTCACCTCGCCCCAGGGAGACCCCACTTCGGGCCA
TTCACCCAACTGGACCTCCCAGGACAGAGCCCAGAGTGGCCACAGGCTCCCAGATGGTGTCCCG
GGATGGGCTGGATGCTCCCCGCTCTCTGGGACAGAGGCGTTCCTATTCACTCACCCACCTAGCT
GTCCCCAGCACGGGTCATCCAGCTTCCACTGCCCCCCAGACCAATGGGCCTTGGAGTCCCCGGC
CTTACACATCAGGGGCGACTGTCCAGAGTCCCCTAGTCACTCGCAAGGTATGCTCAGGCAGTGT
TTCGGGGCCAACTACCCCTCAGCGAGGGGCCTGCCCCCAAAAGCCAAAGCCTCCTTGGAAATGA
CATTCTTACCAGGTAAGCCTTTGGCTCAAAGCCAGGACTCAAGCTCAGGTGTGGTCCTCTGGAG
ACAATGGTCCCCAGGGCCTCCAAATGCTGGAGAAGCCTCCACGGGGCTCCATGGTAAGGATGGG
CCATATTTTCCCTAGTCCCCACAAGCTCAGGATGTCCCCAGCCTTCTCTGCAGGGTATTTGGGG
TCCTTGAGATAGATGTCTCTGTAGCCATGTGTCAGCCTCCCGGCTTCTGCGTTGGTGCCAAGCC
CCACCCGGTTCCCTACAAAGGGTTCAGTTTCCACAGGGGTCTGAAGGTCTTAAGGGGTCCTGGG
CTGTGTGTGGACCCCAGGGGTGGGACCCGGGGAGACATTATTTTAATATTCATGTATTTATTCC
ACGTATTAAATGTATTTGGATCGCCAAAA

hide sequence

RefSeq Acc Id:

XM_006249384 ⟹ XP_006249446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	41,610,713 - 41,614,545 (+)	NCBI
mRatBN7.2	12	35,950,090 - 35,953,960 (+)	NCBI
Rnor_6.0	12	41,484,970 - 41,488,889 (+)	NCBI
Rnor_5.0	12	43,343,312 - 43,346,990 (+)	NCBI

Sequence:

show sequence

GGGGCGGATTGTACCAACTGAACAGTGATAGGCGCTTAGGAGACCTACTAATTTGCAAGGACAC
CAAACGCTAATAGTTAGGATAGATGTGGAGAGAGCAGAGCCTCAGGAACATACAACTCAACGTG
TGGAAGCTTTGAGGAATGTACCAACTACGCAGGGCAGCCCCCCAGGGCGGGGCCCAATGGATGC
ACGCATGAGAGGGGGTGTGGCCCGTGGAACGTACCATCAGCGCGAGGGCGGGATGTACCAGTGC
GCAGGGGCGGGGCTTCACTCCTGTTGCCCAGCAAGGGCTGTATGTGGGCGCGTGTCGCCGGGGC
GCGGCTGCGGATTTTGTGCTATGCGGGCATTTGTGGCGAAGATTATGCTTGCTGGCCAGAGGTC
CCAGTAGGAAAAGCTCCTAGCATGAAATTCCCGGGACGCCTGCGCTTTCCGCTTTGTAAGCTGT
CTGGTGTGTGCTACTCCGCTGTTTGGAGCCTGAGTTGTAATTGGGGAAAATGGATTTAATCTGA
AGGACCGGTTGGCGAGGACTAGAACGCACCACGCTTGCAAAGCGCTTTGCACAAGGGAGCCCTG
GAGGCTGAATCTGGCAGGCACAGTAAATCCACTGGGCAGCCTGAAGACCCCGGTGGAGGTGGAA
CTGGCCCAGCGTCGGAATGCAGGCACTCCACCTTCAGCACCGCAACCCGCGCAGCTACCGGGTC
AAGGCCAGGGCATCCTATGTGGATGAGACCCTGTTTGGCAGCCCAACAGGAACCCGGCCAACTC
TACCAGACTTTGACCCACCCTGGGTGCAGAATTGTAACAGATCTAGAGGAGTGAGCCCAGGACC
CCCGAAGGTCTCTCTGGCCAAGAGAGACTGTGAGTCTCCCTCCTCCAGGGGCAGCACCCCAAAT
CTCACACCAAGGAAGAAAAACAAATACAGGTTGATTGGCCACACCCCATCCTACTGTGATGAGT
CACTGTTTGGCTCCCGGCCACAGGGCACCAGCAAGGAGAGGTCTCGGACAGCCGTGGAGGATGC
GGCCAAGCTCCGGACCCTTTTCTGGACCCCACCAGCCACCCCTAGGGGCAGCCACTCACCTCGC
CCCAGGGAGACCCCACTTCGGGCCATTCACCCAACTGGACCTCCCAGGACAGAGCCCAGAGTGG
CCACAGGCTCCCAGATGGTGTCCCGGGATGGGCTGGATGCTCCCCGCTCTCTGGGACAGAGGCG
TTCCTATTCACTCACCCACCTAGCTGTCCCCAGCACGGGTCATCCAGCTTCCACTGCCCCCCAG
ACCAATGGGCCTTGGAGTCCCCGGCCTTACACATCAGGGGCGACTGTCCAGAGTCCCCTAGTCA
CTCGCAAGGTATGCTCAGGCAGTGTTTCGGGGCCAACTACCCCTCAGCGAGGGGCCTGCCCCCA
AAAGCCAAAGCCTCCTTGGAAATGACATTCTTACCAGGTAAGCCTTTGGCTCAAAGCCAGGACT
CAAGCTCAGGTGTGGTCCTCTGGAGACAATGGTCCCCAGGGCCTCCAAATGCTGGAGAAGCCTC
CACGGGGCTCCATGGTAAGGATGGGCCATATTTTCCCTAGTCCCCACAAGCTCAGGATGTCCCC
AGCCTTCTCTGCAGGGTATTTGGGGTCCTTGAGATAGATGTCTCTGTAGCCATGTGTCAGCCTC
CCGGCTTCTGCGTTGGTGCCAAGCCCCACCCGGTTCCCTACAAAGGGTTCAGTTTCCACAGGGG
TCTGAAGGTCTTAAGGGGTCCTGGGCTGTGTGTGGACCCCAGGGGTGGGACCCGGGGAGACATT
ATTTTAATATTCATGTATTTATTCCACGTATTAAATGTATTTGGATCGCCAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001037691	(Get FASTA)	NCBI Sequence Viewer
	XP_006249445	(Get FASTA)	NCBI Sequence Viewer
	XP_006249446	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI12385	(Get FASTA)	NCBI Sequence Viewer
	EDM13774	(Get FASTA)	NCBI Sequence Viewer
	EDM13775	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000054067
	ENSRNOP00000054067.2
GenBank Protein	Q2KJ10	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001037691 ⟸ NM_001044226

- UniProtKB:

Q2KJ10 (UniProtKB/Swiss-Prot), A6J1I6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQALHLQHRNPRSYRVKARASYVDETLFGSPTGTRPTLPDFDPPWVQNCNRSRGVSPGPPKVSL
AKRDCESPSSRGSTPNLTPRKKNKYRLIGHTPSYCDESLFGSRPQGTSKERSRTAVEDAAKLRT
LFWTPPATPRGSHSPRPRETPLRAIHPTGPPRTEPRVATGSQMVSRDGLDAPRSLGQRRSYSLT
HLAVPSTGHPASTAPQTNGPWSPRPYTSGATVQSPLVTRKVCSGSVSGPTTPQRGACPQKPKPP
WK

hide sequence

RefSeq Acc Id:	XP_006249445 ⟸ XM_006249383
- Peptide Label:	isoform X1
- UniProtKB:	Q2KJ10 (UniProtKB/Swiss-Prot), A6J1I6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQALHLQHRNPRSYRVKARASYVDETLFGSPTGTRPTLPDFDPPWVQNCNRSRGVSPGPPKVSL AKRDCESPSSRGSTPNLTPRKKNKYRLIGHTPSYCDESLFGSRPQGTSKERSRTAVEDAAKLRT LFWTPPATPRGSHSPRPRETPLRAIHPTGPPRTEPRVATGSQMVSRDGLDAPRSLGQRRSYSLT HLAVPSTGHPASTAPQTNGPWSPRPYTSGATVQSPLVTRKVCSGSVSGPTTPQRGACPQKPKPP WK hide sequence

RefSeq Acc Id:	XP_006249446 ⟸ XM_006249384
- Peptide Label:	isoform X1
- UniProtKB:	Q2KJ10 (UniProtKB/Swiss-Prot), A6J1I6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQALHLQHRNPRSYRVKARASYVDETLFGSPTGTRPTLPDFDPPWVQNCNRSRGVSPGPPKVSL AKRDCESPSSRGSTPNLTPRKKNKYRLIGHTPSYCDESLFGSRPQGTSKERSRTAVEDAAKLRT LFWTPPATPRGSHSPRPRETPLRAIHPTGPPRTEPRVATGSQMVSRDGLDAPRSLGQRRSYSLT HLAVPSTGHPASTAPQTNGPWSPRPYTSGATVQSPLVTRKVCSGSVSGPTTPQRGACPQKPKPP WK hide sequence

Ensembl Acc Id:

ENSRNOP00000054067 ⟸ ENSRNOT00000057242

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2KJ10-F1-model_v2	AlphaFold	Q2KJ10	1-258	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306772	AgrOrtholog
BioCyc Gene	G2FUF-19183	BioCyc
Ensembl Genes	ENSRNOG00000037720	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000057242	ENTREZGENE
	ENSRNOT00000057242.3	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7932995	IMAGE-MGC_LOAD
InterPro	RITA1	UniProtKB/Swiss-Prot
KEGG Report	rno:288683	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124697	IMAGE-MGC_LOAD
NCBI Gene	288683	ENTREZGENE
PANTHER	PTHR34917	UniProtKB/Swiss-Prot
	RBPJ-INTERACTING AND TUBULIN-ASSOCIATED PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	RITA	UniProtKB/Swiss-Prot
PhenoGen	Rita1	PhenoGen
RatGTEx	ENSRNOG00000037720	RatGTEx
UniProt	A6J1I6	ENTREZGENE, UniProtKB/TrEMBL
	Q2KJ10	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-31	Rita1	RBPJ interacting and tubulin associated 1	RGD1306772	similar to RIKEN cDNA 1110008J03	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1306772	similar to RIKEN cDNA 1110008J03	RGD1306772_predicted	similar to RIKEN cDNA 1110008J03 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1306772_predicted	similar to RIKEN cDNA 1110008J03 (predicted)	LOC288683_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC288683_predicted	similar to RIKEN cDNA 1110008J03 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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