Zbtb49 (zinc finger and BTB domain containing 49) - Rat Genome Database

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Gene: Zbtb49 (zinc finger and BTB domain containing 49) Rattus norvegicus
Analyze
Symbol: Zbtb49
Name: zinc finger and BTB domain containing 49
RGD ID: 1306733
Description: Predicted to enable several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and transcription coactivator binding activity. Predicted to be involved in several processes, including negative regulation of cell population proliferation; regulation of cytokine production; and regulation of transcription by RNA polymerase II. Predicted to be located in cytosol; microtubule cytoskeleton; and nucleus. Predicted to be active in nucleoplasm. Orthologous to human ZBTB49 (zinc finger and BTB domain containing 49); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305428; Zfp509; zinc finger and BTB domain-containing protein 49; zinc finger protein 509; Znf509
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,802,988 - 76,835,573 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1476,802,495 - 76,824,718 (+)EnsemblGRCr8
mRatBN7.21472,590,692 - 72,612,404 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,590,708 - 72,612,404 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1477,032,377 - 77,054,090 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01478,273,251 - 78,294,964 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01474,713,327 - 74,735,038 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1477,332,002 - 77,353,707 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1475,960,751 - 75,982,456 (+)NCBILyon_Normotensive
Lyon_Hypertensive1477,479,554 - 77,501,259 (+)NCBILyon_Hypertensive
F344_StmMcwi1476,403,666 - 76,425,371 (+)NCBIF344_StmMcwi
Rnor_6.01477,322,014 - 77,343,736 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1477,322,012 - 77,343,764 (+)Ensemblrn6Rnor6.0
Rnor_5.01477,303,883 - 77,325,598 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41477,873,462 - 77,895,156 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1471,541,223 - 71,562,888 (+)NCBICelera
RGSC_v3.11477,875,524 - 77,897,199 (+)NCBI
Cytogenetic Map14q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleoplasm  (IBA)
nucleus  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25245946  


Genomics

Comparative Map Data
Zbtb49
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81476,802,988 - 76,835,573 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1476,802,495 - 76,824,718 (+)EnsemblGRCr8
mRatBN7.21472,590,692 - 72,612,404 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1472,590,708 - 72,612,404 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1477,032,377 - 77,054,090 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01478,273,251 - 78,294,964 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01474,713,327 - 74,735,038 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1477,332,002 - 77,353,707 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1475,960,751 - 75,982,456 (+)NCBILyon_Normotensive
Lyon_Hypertensive1477,479,554 - 77,501,259 (+)NCBILyon_Hypertensive
F344_StmMcwi1476,403,666 - 76,425,371 (+)NCBIF344_StmMcwi
Rnor_6.01477,322,014 - 77,343,736 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1477,322,012 - 77,343,764 (+)Ensemblrn6Rnor6.0
Rnor_5.01477,303,883 - 77,325,598 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41477,873,462 - 77,895,156 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1471,541,223 - 71,562,888 (+)NCBICelera
RGSC_v3.11477,875,524 - 77,897,199 (+)NCBI
Cytogenetic Map14q21NCBI
ZBTB49
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3844,290,251 - 4,321,783 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl44,290,238 - 4,321,786 (+)Ensemblhg38GRCh38
GRCh3744,291,978 - 4,323,510 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3644,342,879 - 4,374,410 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3444,410,049 - 4,441,581NCBI
Celera44,189,549 - 4,221,151 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef44,227,608 - 4,259,207 (+)NCBIHuRef
CHM1_144,289,809 - 4,321,404 (+)NCBICHM1_1
T2T-CHM13v2.044,259,715 - 4,291,244 (+)NCBIT2T-CHM13v2.0
Zbtb49
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39538,347,076 - 38,377,798 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl538,347,079 - 38,377,801 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38538,189,732 - 38,220,499 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl538,189,735 - 38,220,457 (-)Ensemblmm10GRCm38
MGSCv37538,591,283 - 38,611,667 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36538,488,293 - 38,508,677 (-)NCBIMGSCv36mm8
Celera535,649,815 - 35,670,198 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map520.25NCBI
Zbtb49
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555145,335,525 - 5,351,587 (-)Ensembl
ChiLan1.0NW_0049555145,335,216 - 5,358,791 (-)NCBIChiLan1.0ChiLan1.0
ZBTB49
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v234,557,018 - 4,588,500 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan144,489,967 - 4,521,462 (+)NCBINHGRI_mPanPan1
PanPan1.144,370,748 - 4,401,649 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl44,370,748 - 4,401,649 (+)EnsemblpanPan2panpan1.1
ZBTB49
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1369,730,422 - 69,756,454 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl369,700,901 - 69,756,466 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha372,281,775 - 72,308,391 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0370,486,734 - 70,513,392 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl370,494,714 - 70,513,418 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1369,760,830 - 69,787,429 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0369,925,954 - 69,952,552 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0370,307,390 - 70,334,008 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zbtb49
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528563,257,391 - 63,280,533 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647716,963,295 - 16,982,095 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647716,962,462 - 16,982,005 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB49
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl86,050,952 - 6,081,309 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.186,050,952 - 6,081,304 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.285,794,844 - 5,825,195 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB49
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12740,433,986 - 40,465,995 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2740,433,639 - 40,466,361 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604787,234,024 - 87,266,191 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb49
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475521,450,158 - 21,471,751 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Zbtb49
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11166,972,040 - 66,989,407 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zbtb49
77 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:345
Count of miRNA genes:215
Interacting mature miRNAs:244
Transcripts:ENSRNOT00000041639
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
D14Rat100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21472,594,972 - 72,595,181 (+)MAPPERmRatBN7.2
Rnor_6.01477,326,305 - 77,326,513NCBIRnor6.0
Rnor_5.01477,308,167 - 77,308,375UniSTSRnor5.0
RGSC_v3.41477,877,726 - 77,877,935RGDRGSC3.4
RGSC_v3.41477,877,727 - 77,877,935UniSTSRGSC3.4
Celera1471,545,488 - 71,545,696UniSTS
RGSC_v3.11477,880,117 - 77,880,326RGD
FHH x ACI Map1455.78RGD
FHH x ACI Map1455.78UniSTS
Cytogenetic Map14q21UniSTS
RH132576  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21472,612,064 - 72,612,267 (+)MAPPERmRatBN7.2
Rnor_6.01477,343,397 - 77,343,599NCBIRnor6.0
Rnor_5.01477,325,259 - 77,325,461UniSTSRnor5.0
RGSC_v3.41477,894,819 - 77,895,021UniSTSRGSC3.4
Celera1471,562,551 - 71,562,753UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 91 59 6 355 191 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000041639   ⟹   ENSRNOP00000042665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1476,802,998 - 76,824,716 (+)Ensembl
mRatBN7.2 Ensembl1472,590,708 - 72,612,402 (+)Ensembl
Rnor_6.0 Ensembl1477,322,040 - 77,343,734 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088600   ⟹   ENSRNOP00000068611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1476,803,006 - 76,824,718 (+)Ensembl
mRatBN7.2 Ensembl1472,590,711 - 72,612,404 (+)Ensembl
Rnor_6.0 Ensembl1477,322,012 - 77,343,764 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000126176   ⟹   ENSRNOP00000109353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1476,802,495 - 76,824,718 (+)Ensembl
RefSeq Acc Id: NM_001394682   ⟹   NP_001381611
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,803,006 - 76,824,718 (+)NCBI
mRatBN7.21472,590,692 - 72,612,404 (+)NCBI
Dahl_SR_JrHsd1477,332,002 - 77,353,707 (+)NCBI
Lyon_Normotensive1475,960,751 - 75,982,456 (+)NCBI
Lyon_Hypertensive1477,479,554 - 77,501,259 (+)NCBI
F344_StmMcwi1476,403,666 - 76,425,371 (+)NCBI
RefSeq Acc Id: NM_001401386   ⟹   NP_001388315
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,803,006 - 76,824,718 (+)NCBI
mRatBN7.21472,590,692 - 72,612,404 (+)NCBI
Dahl_SR_JrHsd1477,332,002 - 77,353,707 (+)NCBI
Lyon_Normotensive1475,960,751 - 75,982,456 (+)NCBI
Lyon_Hypertensive1477,479,554 - 77,501,259 (+)NCBI
F344_StmMcwi1476,403,666 - 76,425,371 (+)NCBI
RefSeq Acc Id: NM_001401387   ⟹   NP_001388316
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,803,006 - 76,824,718 (+)NCBI
mRatBN7.21472,590,692 - 72,612,404 (+)NCBI
Dahl_SR_JrHsd1477,332,002 - 77,353,707 (+)NCBI
Lyon_Normotensive1475,960,751 - 75,982,456 (+)NCBI
Lyon_Hypertensive1477,479,554 - 77,501,259 (+)NCBI
F344_StmMcwi1476,403,666 - 76,425,371 (+)NCBI
RefSeq Acc Id: NR_174703
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,803,006 - 76,824,718 (+)NCBI
mRatBN7.21472,590,692 - 72,612,404 (+)NCBI
Dahl_SR_JrHsd1477,332,002 - 77,353,707 (+)NCBI
Lyon_Normotensive1475,960,751 - 75,982,456 (+)NCBI
Lyon_Hypertensive1477,479,554 - 77,501,259 (+)NCBI
F344_StmMcwi1476,403,666 - 76,425,371 (+)NCBI
RefSeq Acc Id: NR_174704
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,803,006 - 76,824,718 (+)NCBI
mRatBN7.21472,590,692 - 72,612,404 (+)NCBI
Dahl_SR_JrHsd1477,332,002 - 77,353,707 (+)NCBI
Lyon_Normotensive1475,960,751 - 75,982,456 (+)NCBI
Lyon_Hypertensive1477,479,554 - 77,501,259 (+)NCBI
F344_StmMcwi1476,403,666 - 76,425,371 (+)NCBI
RefSeq Acc Id: XM_063273141   ⟹   XP_063129211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,802,988 - 76,835,573 (+)NCBI
RefSeq Acc Id: XM_063273142   ⟹   XP_063129212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81476,802,988 - 76,811,997 (+)NCBI
Ensembl Acc Id: ENSRNOP00000042665   ⟸   ENSRNOT00000041639
Ensembl Acc Id: ENSRNOP00000068611   ⟸   ENSRNOT00000088600
RefSeq Acc Id: NP_001381611   ⟸   NM_001394682
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JT85 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388316   ⟸   NM_001401387
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001388315   ⟸   NM_001401386
- Peptide Label: isoform 2
RefSeq Acc Id: XP_063129211   ⟸   XM_063273141
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063129212   ⟸   XM_063273142
- Peptide Label: isoform X2
- UniProtKB: A6IJU2 (UniProtKB/TrEMBL),   D4A8F0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000109353   ⟸   ENSRNOT00000126176
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JT85-F1-model_v2 AlphaFold A0A0G2JT85 1-758 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699386
Promoter ID:EPDNEW_R9894
Type:multiple initiation site
Name:Zbtb49_1
Description:zinc finger and BTB domain containing 49
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01477,322,016 - 77,322,076EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306733 AgrOrtholog
BioCyc Gene G2FUF-15383 BioCyc
Ensembl Genes ENSRNOG00000005633 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041639 ENTREZGENE
  ENSRNOT00000041639.4 UniProtKB/TrEMBL
  ENSRNOT00000088600 ENTREZGENE
  ENSRNOT00000088600.3 UniProtKB/TrEMBL
  ENSRNOT00000126176 ENTREZGENE
  ENSRNOT00000126176.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  ZnFinger_BTB_dom_contain UniProtKB/TrEMBL
NCBI Gene 305428 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN CONTAINING 49 UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN CONTAINING 49 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PhenoGen Zbtb49 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005633 RatGTEx
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2JT85 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LVM7_RAT UniProtKB/TrEMBL
  A6IJU2 ENTREZGENE, UniProtKB/TrEMBL
  D4A8F0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Zbtb49  zinc finger and BTB domain containing 49  Zfp509  zinc finger protein 509  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-19 Zfp509  zinc finger protein 509  Znf509  zinc finger protein 509  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Znf509  zinc finger protein 509  Zfp509  zinc finger protein 509   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zfp509  zinc finger protein 509   Zfp509_predicted  zinc finger protein 509 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zfp509_predicted  zinc finger protein 509 (predicted)      Symbol and Name status set to approved 70820 APPROVED