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Gene: Rtel1 (regulator of telomere elongation helicase 1) Rattus norvegicus

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Symbol:

Rtel1

Name:

regulator of telomere elongation helicase 1

RGD ID:

1306721

Description:

Predicted to enable ATP binding activity; DNA helicase activity; and DNA polymerase binding activity. Predicted to be involved in DNA metabolic process and regulation of DNA metabolic process. Predicted to be located in chromosome, telomeric region. Predicted to be active in nucleus. Biomarker of silicosis. Human ortholog(s) of this gene implicated in several diseases, including autosomal recessive dyskeratosis congenita 5; female breast cancer; gastric adenocarcinoma; high grade glioma (multiple); and lung disease (multiple). Orthologous to human RTEL1 (regulator of telomere elongation helicase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

helicase-like protein NHL; LOC362288; RGD1306721; similar to helicase-like protein NHL isoform 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RTEL1 (regulator of telomere elongation helicase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rtel1 (regulator of telomere elongation helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rtel1 (regulator of telomere elongation helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RTEL1 (regulator of telomere elongation helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RTEL1 (regulator of telomere elongation helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rtel1 (regulator of telomere elongation helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RTEL1 (regulator of telomere elongation helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RTEL1 (regulator of telomere elongation helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rtel1 (regulator of telomere elongation helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rtel1 (regulator of telomere elongation helicase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RTEL1 (regulator of telomere elongation helicase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rtel1 (regulator of telomere elongation helicase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rtel1 (regulator of telomere elongation helicase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rtel1 (regulator of telomere elongation helicase 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rtel-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rtel-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4078	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4078	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rtel1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Candidate Gene For:

Bp286

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	188,778,329 - 188,842,877 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	188,807,951 - 188,843,709 (+)	Ensembl				GRCr8
mRatBN7.2	3	168,427,247 - 168,465,349 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,419,579 - 168,465,348 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	172,810,949 - 172,845,752 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	181,770,049 - 181,804,855 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,431,399 - 178,466,278 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	176,818,012 - 176,856,531 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	176,818,437 - 176,856,531 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	180,528,554 - 180,566,701 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	170,461,613 - 170,496,959 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	164,121,122 - 164,155,994 (-)	NCBI		Celera
RGSC_v3.1	3	170,367,632 - 170,402,995 (+)	NCBI
Cytogenetic Map	3	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive dyskeratosis congenita 5 (ISO)

childhood astrocytic tumor (ISO)

chronic obstructive pulmonary disease (ISO)

Coronary Disease (ISO)

female breast cancer (ISO)

gastric adenocarcinoma (ISO)

high grade glioma (ISO)

Hoyeraal-Hreidarsson Syndrome (ISO)

idiopathic pulmonary fibrosis (ISO)

lung cancer (ISO)

Lung Neoplasms (ISO)

melanoma (ISO)

mixed glioma (ISO)

neuronal ceroid lipofuscinosis (ISO)

prostate cancer (ISO)

Pulmonary Fibrosis and/or Bone Marrow Failure Syndrome, Telomere-Related, 3 (ISO)

silicosis (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (EXP)

5-aza-2'-deoxycytidine (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

allethrin (EXP)

alpha-pinene (ISO)

amphetamine (EXP)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol A diglycidyl ether (ISO)

bisphenol AF (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cyclophosphamide (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

diallyl trisulfide (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

fenvalerate (EXP)

FR900359 (ISO)

methapyrilene (ISO)

N-ethyl-N-nitrosourea (ISO)

ozone (ISO)

paracetamol (ISO)

pentachlorophenol (ISO)

pyrethrins (EXP)

silicate mineral (EXP)

succimer (ISO)

tamibarotene (ISO)

tetraphene (ISO)

triptonide (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response (IEA)

DNA recombination (IEA)

DNA repair (IEA)

DNA replication (IEA)

DNA strand displacement (IEA,ISO)

mitotic telomere maintenance via semi-conservative replication (IEA,ISO)

negative regulation of DNA recombination (IBA,IEA,ISO)

negative regulation of t-circle formation (IBA,IEA,ISO)

negative regulation of telomere maintenance in response to DNA damage (IEA,ISO)

nucleobase-containing compound metabolic process (IEA)

positive regulation of telomere capping (IEA,ISO)

positive regulation of telomere maintenance (IEA,ISO)

positive regulation of telomere maintenance via telomere lengthening (IEA,ISO)

positive regulation of telomeric loop disassembly (IEA,ISO)

regulation of cellular response to stress (IEA)

regulation of DNA recombination (IEA)

regulation of double-strand break repair via homologous recombination (IBA,IEA,ISO,ISS)

replication fork processing (IEA,ISO)

telomere maintenance (IEA,ISO,ISS)

telomere maintenance in response to DNA damage (IEA,ISO)

telomeric loop disassembly (IBA,IEA,ISO)

Cellular Component

chromosome, telomeric region (IEA,ISO)

nuclear membrane (IEA,ISO)

nuclear speck (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

4 iron, 4 sulfur cluster binding (IEA)

ATP binding (IBA,IEA,ISO,ISS)

ATP hydrolysis activity (IEA)

DNA binding (IEA)

DNA helicase activity (IBA,IEA,ISO,ISS)

DNA polymerase binding (IBA,IEA,ISO)

helicase activity (IEA)

hydrolase activity (IEA)

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides (IEA)

iron-sulfur cluster binding (IEA)

isomerase activity (IEA)

metal ion binding (IEA)

nucleic acid binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	CCDC26, CDKN2BAS, RTEL1 and TERT Polymorphisms in pediatric brain tumor susceptibility.	Adel Fahmideh M, etal., Carcinogenesis. 2015 Aug;36(8):876-82. doi: 10.1093/carcin/bgv074. Epub 2015 May 25.
2.	Recurrent amplification of RTEL1 and ABCA13 and its synergistic effect associated with clinicopathological data of gastric adenocarcinoma.	Araújo TM, etal., Mol Cytogenet. 2016 Jun 29;9:52. doi: 10.1186/s13039-016-0260-x. eCollection 2016.
3.	Inherited mutations in the helicase RTEL1 cause telomere dysfunction and Hoyeraal-Hreidarsson syndrome.	Deng Z, etal., Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):E3408-16. doi: 10.1073/pnas.1300600110. Epub 2013 Aug 19.
4.	Association between RTEL1 gene polymorphisms and COPD susceptibility in a Chinese Han population.	Ding Y, etal., Int J Chron Obstruct Pulmon Dis. 2017 Mar 17;12:931-936. doi: 10.2147/COPD.S131246. eCollection 2017.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Familial breast cancer and DNA repair genes: Insights into known and novel susceptibility genes from the GENESIS study, and implications for multigene panel testing.	Girard E, etal., Int J Cancer. 2019 Apr 15;144(8):1962-1974. doi: 10.1002/ijc.31921. Epub 2018 Nov 13.
7.	Genetic variants in RTEL1 influencing telomere length are associated with prostate cancer risk.	Gu CY, etal., J Cancer. 2019 Oct 15;10(24):6170-6174. doi: 10.7150/jca.35917. eCollection 2019.
8.	The effect on melanoma risk of genes previously associated with telomere length.	Iles MM, etal., J Natl Cancer Inst. 2014 Sep 17;106(10). pii: dju267. doi: 10.1093/jnci/dju267. Print 2014 Oct.
9.	Genetic analysis of the relation of telomere length-related gene (RTEL1) and coronary heart disease risk.	Lu S, etal., Mol Genet Genomic Med. 2019 Mar;7(3):e550. doi: 10.1002/mgg3.550. Epub 2019 Jan 8.
10.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
11.	Association analysis of RTEL1 variants with risk of adult gliomas in a Korean population.	Namgoong S, etal., PLoS One. 2018 Nov 21;13(11):e0207660. doi: 10.1371/journal.pone.0207660. eCollection 2018.
12.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
13.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
15.	Silica inhalation altered telomere length and gene expression of telomere regulatory proteins in lung tissue of rats.	Shoeb M, etal., Sci Rep. 2017 Dec 11;7(1):17284. doi: 10.1038/s41598-017-17645-y.
16.	RTEL1 polymorphisms are associated with lung cancer risk in the Chinese Han population.	Yan S, etal., Oncotarget. 2016 Oct 25;7(43):70475-70480. doi: 10.18632/oncotarget.12297.

Additional References at PubMed

PMID:12477932	PMID:15210109	PMID:18957201	PMID:22579284	PMID:23453664	PMID:23585563	PMID:24115439	PMID:25620558

Genomics

Comparative Map Data

Rtel1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	188,778,329 - 188,842,877 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	188,807,951 - 188,843,709 (+)	Ensembl				GRCr8
mRatBN7.2	3	168,427,247 - 168,465,349 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,419,579 - 168,465,348 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	172,810,949 - 172,845,752 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	181,770,049 - 181,804,855 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	178,431,399 - 178,466,278 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	176,818,012 - 176,856,531 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	176,818,437 - 176,856,531 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	180,528,554 - 180,566,701 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	170,461,613 - 170,496,959 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	164,121,122 - 164,155,994 (-)	NCBI		Celera
RGSC_v3.1	3	170,367,632 - 170,402,995 (+)	NCBI
Cytogenetic Map	3	q43	NCBI

RTEL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	63,657,810 - 63,696,253 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	63,657,810 - 63,696,253 (+)	Ensembl			hg38	GRCh38
GRCh37	20	62,289,163 - 62,327,606 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	61,760,091 - 61,798,045 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	61,760,090 - 61,800,495	NCBI
Celera	20	58,970,388 - 59,011,862 (+)	NCBI		Celera
Cytogenetic Map	20	q13.33	NCBI
HuRef	20	59,019,189 - 59,060,580 (+)	NCBI		HuRef
CHM1_1	20	62,190,825 - 62,229,469 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	65,471,931 - 65,516,559 (+)	NCBI		T2T-CHM13v2.0

Rtel1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	180,961,504 - 180,998,409 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	180,961,532 - 180,998,409 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	181,319,711 - 181,356,616 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	181,319,739 - 181,356,616 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	181,054,429 - 181,091,321 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	181,249,192 - 181,286,023 (+)	NCBI		MGSCv36	mm8
Celera	2	185,402,416 - 185,438,885 (+)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	103.63	NCBI

Rtel1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955528	532,385 - 572,398 (-)	Ensembl
ChiLan1.0	NW_004955528	531,680 - 578,003 (-)	NCBI	ChiLan1.0	ChiLan1.0

RTEL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	69,455,949 - 69,502,261 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	69,448,455 - 69,494,640 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	20	61,580,222 - 61,619,172 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	115,408,600 - 115,412,293 (+)	Ensembl			panPan2	panpan1.1
PanPan1.1 Ensembl	20	61,581,331 - 61,618,718 (+)	Ensembl			panPan2	panpan1.1

RTEL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	47,219,977 - 47,248,791 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
ROS_Cfam_1.0	24	48,358,971 - 48,387,747 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	48,356,908 - 48,387,748 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	47,203,889 - 47,232,649 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	47,328,761 - 47,357,499 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	48,066,842 - 48,095,619 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rtel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	195,467,576 - 195,500,840 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	10,922,322 - 10,954,402 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	10,920,979 - 10,954,483 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RTEL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	62,611,909 - 62,634,690 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	62,611,844 - 62,636,628 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RTEL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	531,905 - 567,430 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	531,085 - 566,840 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	48,086,325 - 48,123,114 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rtel1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	29,304,427 - 29,343,842 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624741	29,303,844 - 29,344,123 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rtel1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	158,416,839 - 158,450,652 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	130
Count of miRNA genes:	104
Interacting mature miRNAs:	112
Transcripts:	ENSRNOT00000055030
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1300161	Rf10	Renal function QTL 10	3.57		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	3	181611379	189428310	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235775	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235776	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC117053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055030 ⟹ ENSRNOP00000051909

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,807,962 - 188,843,709 (+)	Ensembl
mRatBN7.2 Ensembl	3	168,430,452 - 168,465,348 (+)	Ensembl
Rnor_6.0 Ensembl	3	176,821,652 - 176,856,531 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087279 ⟹ ENSRNOP00000069471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	168,430,449 - 168,465,348 (+)	Ensembl
Rnor_6.0 Ensembl	3	176,818,437 - 176,856,530 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098539 ⟹ ENSRNOP00000094899

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,807,998 - 188,842,877 (+)	Ensembl
mRatBN7.2 Ensembl	3	168,430,452 - 168,465,348 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098630 ⟹ ENSRNOP00000087672

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	168,419,579 - 168,465,348 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100640 ⟹ ENSRNOP00000088333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,807,951 - 188,842,873 (+)	Ensembl
mRatBN7.2 Ensembl	3	168,419,579 - 168,465,348 (+)	Ensembl

RefSeq Acc Id:

NM_001191857 ⟹ NP_001178786

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,807,998 - 188,842,877 (+)	NCBI
mRatBN7.2	3	168,430,452 - 168,465,348 (+)	NCBI
Rnor_6.0	3	176,821,652 - 176,856,531 (+)	NCBI
Rnor_5.0	3	180,528,554 - 180,566,701 (+)	NCBI
Celera	3	164,121,122 - 164,155,994 (-)	NCBI

Sequence:

show sequence

AAGTTCCAATCAGCAGACTGCGGAGCACGCGGGGGTCGGCGTCTTTACAATTGATTGACTTCGG
ATTTTGCAAGGCACCCCCACCGAGACAAGGAATTCCTGCAGAGAGAAACCTGGTGCCACATGCT
GCCAGCACTTAACCTGGAGCGGCTGAAACACTGAGATGTTCAGAGGGGTTTCTCTGACAGACCC
AAACAGCCTGCATCTTGGCCTACCACCGTGTCTTCCTCAGTATAGGCTGATATGCCCAGGGTAG
TCCTGAATGGTGTGACAGTGGATTTCCCTTTCCAGCCCTACCCATGCCAGCAGGAATATATGAC
CAAGGTGCTAGAATGTCTCCAGAAGAAAGTGAATGGCATCCTCGAGAGCCCCACTGGCACTGGG
AAGACGCTATGCCTCCTCTGCACTACATTGGCCTGGCGGGAACATCTCCGAGATGCCGTTTCTT
CCCTAAAGATTGCTGAGAGAGTTCAAGGGGAACTCTTTGCCAGTCGGACCTTGTCATCCTGGAG
GAGTGCTGCTGATGCCAATGGAGACTCAATAGATTGCTACACAGATATCCCAAAGATCATCTAT
GCTTCTAGAACTCACTCACAGCTAACTCAGGTCATCGGTGAGCTTCGGAATACTTCCTACCGGC
CCAAGGTGTGTGTGCTGGGCTCCCGGGAGCAGCTGTGTATTCATCCCGAAGTGAAGAAGCAAGA
GAGTAACCACATGCAGATCAGTTTGTGCCGTAAGAAGGTGGCAAGTCGCTCCTGTCATTTCTAC
AACAATGTGGAAGAGAAAAGCCTGGAGCAAGAGCTGGCTACCCCCATCTTGGATATTGAGGACC
TTGTGAAGAACGGAAGCAAACACAAAGTGTGCCCATACTACCTCTCTCGAAACCTGAAGCAGCA
AGCTGATATCATCTTTATGCCATACAATTACTTGTTGGATGCTAAGAGTCGTAAGGCACACAAC
ATTGACCTGAAGGGAACGGTTGTAATCTTTGATGAAGCTCACAATGTGGAAAAGATATGTGAGG
AGTCAGCCTCCTTTGACTTGACTCCCCGAGATGTGGCTTCAGGACTGGAGGTTATCAACCAGGT
TTTGGAGGAGCAAGCCCGGGTGGCTCAGCATGGTGAACTCCAACAGGAGTTCATTATAGACACG
TCCAGCTCAGGTCTCAACATGGAGCTGGAAGACATCGCAAAGTTGAAGATGATCCTGCTGCACC
TGGAGGAGGCTATTGATGCTGTTCAGCTGCCTGGGGATGACAGAGGAGTCACCAAACCTGGAAG
CTACATCTTCGAGCTGTTTGCTGAAGCACAAATAACATTTCAAACCAAAGGCTGCATTTTGGAG
TCGCTGGACCAGATAATCCAGCACCTGACAGGACGCACTGGTGTGTTCACCAACACGGCTGGGT
TGCAGAAGCTCATGGACATTATCCAGATTGTGTTCAGCGTGGACCCTCTGGAAGGCAGCCCTGG
TTCTCAGGTGGGGCTGGGTAGCTCACATTTCTATAAGGTACACATACACCCTGAAACCAGCCAC
CGGAGAGCAGCTCAGCGGTCAGATGCCTGGAGTACCACTGCATCCAGGAAACAAGGGAAGGTGC
TGAGCTATTGGTGCTTCAGTCCCAGCCACAGCATGCGTGAACTGGTCCAGCAAGGAGTCCGTAC
CCTTATCCTCACCAGTGGTACACTGGCTCCGCTGTCTTCCTTTGCTCTGGAGATGCAAATTCCA
TTCCCAGTCTGTCTGGAGAATCCACACATCATTGACAAGAACCAGCTCTGGGTAGGGGTTATCC
CCAGAGGACCTGATGGTGTTCAGCTAAGCTCTGCCTATGACAAAAGGTTTTCTGAAGAGTGCTT
ATCTTCCCTGGGGAAGGCTCTGGGCAACATTGCTCGTGTGGTGCCCCATGGGCTTCTGGTCTTC
TTCCCTTCCTACCCTGTCATGGAGAAAAGCCTGGAGTTCTGGCAGGCGCAAGGCATGTCCAAAA
AGGTAGAGGCACTGAAGCCTCTATTCGTGGAACCCAGGAACAAAGGCAGCTTCTCAGAGGTCAT
TGATGCCTACTACCAGCAAGTTGCCTCCCCTGGGTCTAATGGGGCCACCTTCTTAGCAGTGTGT
CGAGGAAAGGCCAGTGAAGGGCTGGACTTCTCAGACATGAATGGTCGTGGTGTGATTGTCACGG
GCCTCCCATATCCCCCACGCATGGATCCCCGTGTTATCCTCAAGATGCAGTTCTTGGATGAGAT
GAAAGGCCGGAGTAGGGTTGGAGGCCAGTGCCTCTCTGGACAGGAATGGTACCAGCAACAAGCA
TCCAGGGCTGTGAACCAGGCTATTGGGAGGGTTATCCGACACCGCCATGACTATGGGGCCATCT
TCTTATGTGACCACAGGTTTGCCTATGCTGATGCCAGGGCCCATCTGCCCTCCTGGGTGCGCCC
CTACCTCAAGGTGTATGACAACTTTGGCCGTGTCATCCGAGATGTGGCCCAGTTCTTCCGTGTT
GCTCAGAAAGCTATGCCTTTGCCAGTTCCTCAGGCTGTGACCTCAAGTGTGAGTGAGGGAGAAG
CTGCTGTCAAGGAGGCCACATTGTCCAGCCACTCCCTCTCCACCAGGAAAGCCATGAGCTTGGA
TGTGCATGTGCCCAGCCTGAGGCGGAGGCCCGTAGGATTACCGACTGCTGGAGACTCCGAGAGC
AGCGTATGTGTGGAGTATGAGCAGCAGACATTTTCTGCCCAGAAGAGACCCATGGGGCTGCTAG
CTGCCTTAGAGTACAACGAGCAGAAGGCTGGGGCATCTGAGGAGCAGGCACTCAGCTCCTCCAC
CCCATCTCTCCGGTGTGAAAAGAGGCTGTCCGTTGAGCAAAGAGGAGGAAAGAAGAAAGTCAGG
CTGGTCAACCATCCGGAGGAACCAGTGGCTGGCACACAGGCAGGCAGAGCCAAGATGTTCATGG
TGGCCGTGAAGCAAGCACTGAGCCAAGCTAACTTTGACACCTTTACCCAGGCCCTGCAGCACTA
TAAGAGTTCTGATGACTTTGAAGCCCTAGTGGCCTCTCTCACCTGCCTCTTTGCTGAAGACCCC
AAGAAACACACCCTACTTAAAGGTTTCTACCAGTTTGTACGACCCCACCACAAGCAGCAGTTTG
AGGACATCTGCTTCCAGCTAACAGGCCAACGATGTAGCTACCAGCCAGGAAACAGCCTTCCCTT
TGGAGAGCAAGCACAGTCAACTGCCAGTAAGCAAGGAAGGAGAGAGCTGGAATCTAAACTGACC
TTGTCTGAAGGTGCAGATAGGCAGCTGGATCCTGGAGAGCACCTGAATCAGGGGTGGCCTCACC
TGTCTACCCATCTAACCTCCAAAGGAGACACCAGCAATTGTCCAAAAGTGGGATGTGTGGGAGA
AAAACCTGGCCAGCCTGCTGTGAATGACTACCTATCTGACGTCCACAAAGCTCTGGGATCTGCA
AGCTGCAACCAGCTTACGGCAGCTCTGAGGGCATACAAACAGGATGATGACCTGGACAAAGTGC
TGGCTGTGGTGGCAGCATTGACCACTGCAAAACCTGAACACTTATCTTTGCTACAGAGATTTGG
CATGTTTATACGTCGGCATCATAAGCCTCGGTTTGTACAGACCTGTGCAGACCTAATGGGCCTA
CCTACCATAGGCAAGGGCTTGGAGCTCCCATGTCCCAGGGATGAGAGTACAACTGTGCCTTCTG
AGCTTACTCATGAGGACATGAAACCAGGGCCCTCGACGTCCAAGAAACCTGAGAAGACCCAGAG
TAAGATCTCATCCTTCCTTAGACAGAGGCCAGACCAGAGTGCGAGGTCTGATGATACCATAATG
CAGCTTCCTCCCAGACTACCCCCTGAACACACGACGTCTCAGTGGAATTTTGTATGCCCAGCCT
GTGCAACTGAGGATACAGTGCTTTTCCAGTGCCCTTCCTGTGACTTCTGCCGCTGCCGGGCCTG
CTGGCAACGTCAACTCCAGGCCTCTAGACTGTGTCCAGCTTGTGGTGCTGTTAACAGGAAGCAG
AGCATTGCACAGGTCATCTGGCCGAAGCCCCAGTGAACACAGATGATGGCCTTTGCTGGCCCAG
ATGCGGCTAAATCCACTGTAGCTCTCATGCTCAGCTGTCCAATGGAATCTACTTGTGAAGTCTT
AAAACTTCAAATATATTGGCATCGCACACATATTACTGAAGGTATAGACTGTTCAATAAAATTA
ACAGTTGTCAGGA

hide sequence

RefSeq Acc Id:

XM_006235772 ⟹ XP_006235834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,807,932 - 188,842,877 (+)	NCBI
mRatBN7.2	3	168,430,386 - 168,465,349 (+)	NCBI
Rnor_6.0	3	176,821,599 - 176,856,531 (+)	NCBI
Rnor_5.0	3	180,528,554 - 180,566,701 (+)	NCBI

Sequence:

show sequence

AGGGAGAAAACGGAAGTGTATCATTTAGGCGGGGCTACACGGATCTGCCCGCGAAGTTCCAATC
AGCAGACTGCGGAGCACGCGGGGGTCGGCGTCTTTACAATTGATTGACTTCGGATTTTGCAAGG
CACCCCCACCGAGACAAGGAATTCCTGCAGAGAGAAACCTGGTGCCACATGCTGCCAGCACTTA
ACCTGGAGCGGCTGAAACACTGAGATGTTCAGAGGGGTTTCTCTGACAGACCCAAACAGCCTGC
ATCTTGGCCTACCACCGTGTCTTCCTCAGTATAGGCTGATATGCCCAGGGTAGTCCTGAATGGT
GTGACAGTGGATTTCCCTTTCCAGCCCTACCCATGCCAGCAGGAATATATGACCAAGGTGCTAG
AATGTCTCCAGAAGAAAGTGAATGGCATCCTCGAGAGCCCCACTGGCACTGGGAAGACGCTATG
CCTCCTCTGCACTACATTGGCCTGGCGGGAACATCTCCGAGATGCCGTTTCTTCCCTAAAGATT
GCTGAGAGAGTTCAAGGGGAACTCTTTGCCAGTCGGACCTTGTCATCCTGGAGGAGTGCTGCTG
ATGCCAATGGAGACTCAATAGATTGCTACACAGATATCCCAAAGATCATCTATGCTTCTAGAAC
TCACTCACAGCTAACTCAGGTCATCGGTGAGCTTCGGAATACTTCCTACCGGCCCAAGGTGTGT
GTGCTGGGCTCCCGGGAGCAGCTGTGTATTCATCCCGAAGTGAAGAAGCAAGAGAGTAACCACA
TGCAGATCAGTTTGTGCCGTAAGAAGGTGGCAAGTCGCTCCTGTCATTTCTACAACAATGTGGA
AGAGAAAAGCCTGGAGCAAGAGCTGGCTACCCCCATCTTGGATATTGAGGACCTTGTGAAGAAC
GGAAGCAAACACAAAGTGTGCCCATACTACCTCTCTCGAAACCTGAAGCAGCAAGCTGATATCA
TCTTTATGCCATACAATTACTTGTTGGATGCTAAGAGTCGTAAGGCACACAACATTGACCTGAA
GGGAACGGTTGTAATCTTTGATGAAGCTCACAATGTGGAAAAGATATGTGAGGAGTCAGCCTCC
TTTGACTTGACTCCCCGAGATGTGGCTTCAGGACTGGAGGTTATCAACCAGGTTTTGGAGGAGC
AAGCCCGGGTGGCTCAGCATGGTGAACTCCAACAGGAGTTCATTATAGACACGTCCAGCTCAGG
TCTCAACATGGAGCTGGAAGACATCGCAAAGTTGAAGATGATCCTGCTGCACCTGGAGGAGGCT
ATTGATGCTGTTCAGCTGCCTGGGGATGACAGAGGAGTCACCAAACCTGGAAGCTACATCTTCG
AGCTGTTTGCTGAAGCACAAATAACATTTCAAACCAAAGGCTGCATTTTGGAGTCGCTGGACCA
GATAATCCAGCACCTGACAGGACGCACTGGTGTGTTCACCAACACGGCTGGGTTGCAGAAGCTC
ATGGACATTATCCAGATTGTGTTCAGCGTGGACCCTCTGGAAGGCAGCCCTGGTTCTCAGGTGG
GGCTGGGTAGCTCACATTTCTATAAGGTACACATACACCCTGAAACCAGCCACCGGAGAGCAGC
TCAGCGGTCAGATGCCTGGAGTACCACTGCATCCAGGAAACAAGGGAAGGTGCTGAGCTATTGG
TGCTTCAGTCCCAGCCACAGCATGCGTGAACTGGTCCAGCAAGGAGTCCGTACCCTTATCCTCA
CCAGTGGTACACTGGCTCCGCTGTCTTCCTTTGCTCTGGAGATGCAAATTCCATTCCCAGTCTG
TCTGGAGAATCCACACATCATTGACAAGAACCAGCTCTGGGTAGGGGTTATCCCCAGAGGACCT
GATGGTGTTCAGCTAAGCTCTGCCTATGACAAAAGGTTTTCTGAAGAGTGCTTATCTTCCCTGG
GGAAGGCTCTGGGCAACATTGCTCGTGTGGTGCCCCATGGGCTTCTGGTCTTCTTCCCTTCCTA
CCCTGTCATGGAGAAAAGCCTGGAGTTCTGGCAGGCGCAAGGCATGTCCAAAAAGGTAGAGGCA
CTGAAGCCTCTATTCGTGGAACCCAGGAACAAAGGCAGCTTCTCAGAGGTCATTGATGCCTACT
ACCAGCAAGTTGCCTCCCCTGGGTCTAATGGGGCCACCTTCTTAGCAGTGTGTCGAGGAAAGGC
CAGTGAAGGGCTGGACTTCTCAGACATGAATGGTCGTGGTGTGATTGTCACGGGCCTCCCATAT
CCCCCACGCATGGATCCCCGTGTTATCCTCAAGATGCAGTTCTTGGATGAGATGAAAGGCCGGA
GTAGGGTTGGAGGCCAGTGCCTCTCTGGACAGGAATGGTACCAGCAACAAGCATCCAGGGCTGT
GAACCAGGCTATTGGGAGGGTTATCCGACACCGCCATGACTATGGGGCCATCTTCTTATGTGAC
CACAGGTTTGCCTATGCTGATGCCAGGGCCCATCTGCCCTCCTGGGTGCGCCCCTACCTCAAGG
TGTATGACAACTTTGGCCGTGTCATCCGAGATGTGGCCCAGTTCTTCCGTGTTGCTCAGAAAGC
TATGCCTTTGCCAGTTCCTCAGGCTGTGACCTCAAGTGTGAGTGAGGGAGAAGCTGCTGTCAAG
GAGGCCACATTGTCCAGCCACTCCCTCTCCACCAGGAAAGCCATGAGCTTGGATGTGCATGTGC
CCAGCCTGAGGCGGAGGCCCGTAGGATTACCGACTGCTGGAGACTCCGAGAGCAGCGTATGTGT
GGAGTATGAGCAGCAGACATTTTCTGCCCAGAAGAGACCCATGGGGCTGCTAGCTGCCTTAGAG
TACAACGAGCAGAAGGCTGGGGCATCTGAGGAGCAGGCACTCAGCTCCTCCACCCCATCTCTCC
GGTGTGAAAAGAGGCTGTCCGTTGAGCAAAGAGGAGGAAAGAAGAAAGTCAGGCTGGTCAACCA
TCCGGAGGAACCAGTGGCTGGCACACAGGCAGGCAGAGCCAAGATGTTCATGGTGGCCGTGAAG
CAAGCACTGAGCCAAGCTAACTTTGACACCTTTACCCAGGCCCTGCAGCACTATAAGAGTTCTG
ATGACTTTGAAGCCCTAGTGGCCTCTCTCACCTGCCTCTTTGCTGAAGACCCCAAGAAACACAC
CCTACTTAAAGGTTTCTACCAGTTTGTACGACCCCACCACAAGCAGCAGTTTGAGGACATCTGC
TTCCAGCTAACAGGCCAACGATGTAGCTACCAGCCAGGAAACAGCCTTCCCTTTGGAGAGCAAG
CACAGTCAACTGCCAGAAGGAGAGAGCTGGAATCTAAACTGACCTTGTCTGAAGGTGCAGATAG
GCAGCTGGATCCTGGAGAGCACCTGAATCAGGGGTGGCCTCACCTGTCTACCCATCTAACCTCC
AAAGGAGACACCAGCAATTGTCCAAAAGTGGGATGTGTGGGAGAAAAACCTGGCCAGCCTGCTG
TGAATGACTACCTATCTGACGTCCACAAAGCTCTGGGATCTGCAAGCTGCAACCAGCTTACGGC
AGCTCTGAGGGCATACAAACAGGATGATGACCTGGACAAAGTGCTGGCTGTGGTGGCAGCATTG
ACCACTGCAAAACCTGAACACTTATCTTTGCTACAGAGATTTGGCATGTTTATACGTCGGCATC
ATAAGCCTCGGTTTGTACAGACCTGTGCAGACCTAATGGGCCTACCTACCATAGGCAAGGGCTT
GGAGCTCCCATGTCCCAGGGATGAGAGTACAACTGTGCCTTCTGAGCTTACTCATGAGGACATG
AAACCAGGGCCCTCGACGTCCAAGAAACCTGAGAAGACCCAGAGTAAGATCTCATCCTTCCTTA
GACAGAGGCCAGACCAGAGTGCGAGGTCTGATGATACCATAATGCAGCTTCCTCCCAGACTACC
CCCTGAACACACGACGTCTCAGTGGAATTTTGTATGCCCAGCCTGTGCAACTGAGGATACAGTG
CTTTTCCAGTGCCCTTCCTGTGACTTCTGCCGCTGCCGGGCCTGCTGGCAACGTCAACTCCAGG
CCTCTAGACTGTGTCCAGCTTGTGGTGCTGTTAACAGGAAGCAGAGCATTGCACAGGTCATCTG
GCCGAAGCCCCAGTGAACACAGATGATGGCCTTTGCTGGCCCAGATGCGGCTAAATCCACTGTA
GCTCTCATGCTCAGCTGTCCAATGGAATCTACTTGTGAAGTCTTAAAACTTCAAATATATTGGC
ATCGCACACATATTACTGAAGGTATAGACTGTTCAATAAAATTAACAGTTGTCAGGA

hide sequence

RefSeq Acc Id:

XM_006235773 ⟹ XP_006235835

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,801,985 - 188,842,877 (+)	NCBI
mRatBN7.2	3	168,427,247 - 168,465,349 (+)	NCBI
Rnor_6.0	3	176,818,012 - 176,856,531 (+)	NCBI
Rnor_5.0	3	180,528,554 - 180,566,701 (+)	NCBI

Sequence:

show sequence

AGAGCAACAAGTGCCCTTGTCCACAGAGCTATTTCTCTAATAGGAGCACTTTCAAAACAGCACA
GACAGTTTTCACGTTGGAGTCAAGTGGCAAAGATATAAAAGCTGTTTCCACCCTGTAGTCAGAA
AGACCTTAAAGCTACCACCGCTGGAAGCACATTCTGAATACCCTGGATATAGATTTTCCTTCGG
AGCCTCCAGACAGAGGTCAGAACCTAATACATGAAACATAGAACAGGGCTCTGGTGTGAGATAG
AGGCAGGTTCCAGCACCAGCTCTGACATTCTGAATTTCTGATCTCTCTGAGTTTCTACATTTTG
GATGTAAGATGAAGTCATGATGCCCAGACTCCAAGAGACGGAGGAAAGTGTACTAGATATTGTA
TTGAGATGCTTACTTGTGTACTTTTTATGTAGAAATACCAAGCTCATTCACATGGAGAAAACAC
AGTTCTGCGTGCACACTGTTCATGGAATTCTGCTCTGAGAGAGAGCTAGAAGAAAGAAGAAGCA
CACGAATCTATTCCTAATAATGGAGTTGACCTCTTCAGAAGCAGTAACATCCTCTAGGGAATTC
CTGCAGAGAGAAACCTGGTGCCACATGCTGCCAGCACTTAACCTGGAGCGGCTGAAACACTGAG
ATGTTCAGAGGGGTTTCTCTGACAGACCCAAACAGCCTGCATCTTGGCCTACCACCGTGTCTTC
CTCAGTATAGGCTGATATGCCCAGGGTAGTCCTGAATGGTGTGACAGTGGATTTCCCTTTCCAG
CCCTACCCATGCCAGCAGGAATATATGACCAAGGTGCTAGAATGTCTCCAGAAGAAAGTGAATG
GCATCCTCGAGAGCCCCACTGGCACTGGGAAGACGCTATGCCTCCTCTGCACTACATTGGCCTG
GCGGGAACATCTCCGAGATGCCGTTTCTTCCCTAAAGATTGCTGAGAGAGTTCAAGGGGAACTC
TTTGCCAGTCGGACCTTGTCATCCTGGAGGAGTGCTGCTGATGCCAATGGAGACTCAATAGATT
GCTACACAGATATCCCAAAGATCATCTATGCTTCTAGAACTCACTCACAGCTAACTCAGGTCAT
CGGTGAGCTTCGGAATACTTCCTACCGGCCCAAGGTGTGTGTGCTGGGCTCCCGGGAGCAGCTG
TGTATTCATCCCGAAGTGAAGAAGCAAGAGAGTAACCACATGCAGATCAGTTTGTGCCGTAAGA
AGGTGGCAAGTCGCTCCTGTCATTTCTACAACAATGTGGAAGAGAAAAGCCTGGAGCAAGAGCT
GGCTACCCCCATCTTGGATATTGAGGACCTTGTGAAGAACGGAAGCAAACACAAAGTGTGCCCA
TACTACCTCTCTCGAAACCTGAAGCAGCAAGCTGATATCATCTTTATGCCATACAATTACTTGT
TGGATGCTAAGAGTCGTAAGGCACACAACATTGACCTGAAGGGAACGGTTGTAATCTTTGATGA
AGCTCACAATGTGGAAAAGATATGTGAGGAGTCAGCCTCCTTTGACTTGACTCCCCGAGATGTG
GCTTCAGGACTGGAGGTTATCAACCAGGTTTTGGAGGAGCAAGCCCGGGTGGCTCAGCATGGTG
AACTCCAACAGGAGTTCATTATAGACACGTCCAGCTCAGGTCTCAACATGGAGCTGGAAGACAT
CGCAAAGTTGAAGATGATCCTGCTGCACCTGGAGGAGGCTATTGATGCTGTTCAGCTGCCTGGG
GATGACAGAGGAGTCACCAAACCTGGAAGCTACATCTTCGAGCTGTTTGCTGAAGCACAAATAA
CATTTCAAACCAAAGGCTGCATTTTGGAGTCGCTGGACCAGATAATCCAGCACCTGACAGGACG
CACTGGTGTGTTCACCAACACGGCTGGGTTGCAGAAGCTCATGGACATTATCCAGATTGTGTTC
AGCGTGGACCCTCTGGAAGGCAGCCCTGGTTCTCAGGTGGGGCTGGGTAGCTCACATTTCTATA
AGGTACACATACACCCTGAAACCAGCCACCGGAGAGCAGCTCAGCGGTCAGATGCCTGGAGTAC
CACTGCATCCAGGAAACAAGGGAAGGTGCTGAGCTATTGGTGCTTCAGTCCCAGCCACAGCATG
CGTGAACTGGTCCAGCAAGGAGTCCGTACCCTTATCCTCACCAGTGGTACACTGGCTCCGCTGT
CTTCCTTTGCTCTGGAGATGCAAATTCCATTCCCAGTCTGTCTGGAGAATCCACACATCATTGA
CAAGAACCAGCTCTGGGTAGGGGTTATCCCCAGAGGACCTGATGGTGTTCAGCTAAGCTCTGCC
TATGACAAAAGGTTTTCTGAAGAGTGCTTATCTTCCCTGGGGAAGGCTCTGGGCAACATTGCTC
GTGTGGTGCCCCATGGGCTTCTGGTCTTCTTCCCTTCCTACCCTGTCATGGAGAAAAGCCTGGA
GTTCTGGCAGGCGCAAGGCATGTCCAAAAAGGTAGAGGCACTGAAGCCTCTATTCGTGGAACCC
AGGAACAAAGGCAGCTTCTCAGAGGTCATTGATGCCTACTACCAGCAAGTTGCCTCCCCTGGGT
CTAATGGGGCCACCTTCTTAGCAGTGTGTCGAGGAAAGGCCAGTGAAGGGCTGGACTTCTCAGA
CATGAATGGTCGTGGTGTGATTGTCACGGGCCTCCCATATCCCCCACGCATGGATCCCCGTGTT
ATCCTCAAGATGCAGTTCTTGGATGAGATGAAAGGCCGGAGTAGGGTTGGAGGCCAGTGCCTCT
CTGGACAGGAATGGTACCAGCAACAAGCATCCAGGGCTGTGAACCAGGCTATTGGGAGGGTTAT
CCGACACCGCCATGACTATGGGGCCATCTTCTTATGTGACCACAGGTTTGCCTATGCTGATGCC
AGGGCCCATCTGCCCTCCTGGGTGCGCCCCTACCTCAAGGTGTATGACAACTTTGGCCGTGTCA
TCCGAGATGTGGCCCAGTTCTTCCGTGTTGCTCAGAAAGCTATGCCTTTGCCAGTTCCTCAGGC
TGTGACCTCAAGTGTGAGTGAGGGAGAAGCTGCTGTCAAGGAGGCCACATTGTCCAGCCACTCC
CTCTCCACCAGGAAAGCCATGAGCTTGGATGTGCATGTGCCCAGCCTGAGGCGGAGGCCCGTAG
GATTACCGACTGCTGGAGACTCCGAGAGCAGCGTATGTGTGGAGTATGAGCAGCAGACATTTTC
TGCCCAGAAGAGACCCATGGGGCTGCTAGCTGCCTTAGAGTACAACGAGCAGAAGGCTGGGGCA
TCTGAGGAGCAGGCACTCAGCTCCTCCACCCCATCTCTCCGGTGTGAAAAGAGGCTGTCCGTTG
AGCAAAGAGGAGGAAAGAAGAAAGTCAGGCTGGTCAACCATCCGGAGGAACCAGTGGCTGGCAC
ACAGGCAGGCAGAGCCAAGATGTTCATGGTGGCCGTGAAGCAAGCACTGAGCCAAGCTAACTTT
GACACCTTTACCCAGGCCCTGCAGCACTATAAGAGTTCTGATGACTTTGAAGCCCTAGTGGCCT
CTCTCACCTGCCTCTTTGCTGAAGACCCCAAGAAACACACCCTACTTAAAGGTTTCTACCAGTT
TGTACGACCCCACCACAAGCAGCAGTTTGAGGACATCTGCTTCCAGCTAACAGGCCAACGATGT
AGCTACCAGCCAGGAAACAGCCTTCCCTTTGGAGAGCAAGCACAGTCAACTGCCAGAAGGAGAG
AGCTGGAATCTAAACTGACCTTGTCTGAAGGTGCAGATAGGCAGCTGGATCCTGGAGAGCACCT
GAATCAGGGGTGGCCTCACCTGTCTACCCATCTAACCTCCAAAGGAGACACCAGCAATTGTCCA
AAAGTGGGATGTGTGGGAGAAAAACCTGGCCAGCCTGCTGTGAATGACTACCTATCTGACGTCC
ACAAAGCTCTGGGATCTGCAAGCTGCAACCAGCTTACGGCAGCTCTGAGGGCATACAAACAGGA
TGATGACCTGGACAAAGTGCTGGCTGTGGTGGCAGCATTGACCACTGCAAAACCTGAACACTTA
TCTTTGCTACAGAGATTTGGCATGTTTATACGTCGGCATCATAAGCCTCGGTTTGTACAGACCT
GTGCAGACCTAATGGGCCTACCTACCATAGGCAAGGGCTTGGAGCTCCCATGTCCCAGGGATGA
GAGTACAACTGTGCCTTCTGAGCTTACTCATGAGGACATGAAACCAGGGCCCTCGACGTCCAAG
AAACCTGAGAAGACCCAGAGTAAGATCTCATCCTTCCTTAGACAGAGGCCAGACCAGAGTGCGA
GGTCTGATGATACCATAATGCAGCTTCCTCCCAGACTACCCCCTGAACACACGACGTCTCAGTG
GAATTTTGTATGCCCAGCCTGTGCAACTGAGGATACAGTGCTTTTCCAGTGCCCTTCCTGTGAC
TTCTGCCGCTGCCGGGCCTGCTGGCAACGTCAACTCCAGGCCTCTAGACTGTGTCCAGCTTGTG
GTGCTGTTAACAGGAAGCAGAGCATTGCACAGGTCATCTGGCCGAAGCCCCAGTGAACACAGAT
GATGGCCTTTGCTGGCCCAGATGCGGCTAAATCCACTGTAGCTCTCATGCTCAGCTGTCCAATG
GAATCTACTTGTGAAGTCTTAAAACTTCAAATATATTGGCATCGCACACATATTACTGAAGGTA
TAGACTGTTCAATAAAATTAACAGTTGTCAGGA

hide sequence

RefSeq Acc Id:

XM_006235774 ⟹ XP_006235836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,807,932 - 188,842,877 (+)	NCBI
mRatBN7.2	3	168,430,386 - 168,465,348 (+)	NCBI
Rnor_6.0	3	176,821,599 - 176,856,531 (+)	NCBI
Rnor_5.0	3	180,528,554 - 180,566,701 (+)	NCBI

Sequence:

show sequence

AGGGAGAAAACGGAAGTGTATCATTTAGGCGGGGCTACACGGATCTGCCCGCGAAGTTCCAATC
AGCAGACTGCGGAGCACGCGGGGGTCGGCGTCTTTACAATTGATTGACTTCGGATTTTGCAAGG
CACCCCCACCGAGACAAGGAATTCCTGCAGAGAGAAACCTGGTGCCACATGCTGCCAGCACTTA
ACCTGGAGCGGCTGAAACACTGAGATGTTCAGAGGGGTTTCTCTGACAGACCCAAACAGCCTGC
ATCTTGGCCTACCACCGTGTCTTCCTCAGTATAGGCTGATATGCCCAGGGTAGTCCTGAATGGT
GTGACAGTGGATTTCCCTTTCCAGCCCTACCCATGCCAGCAGGAATATATGACCAAGGTGCTAG
AATGTCTCCAGAAGAAAGTGAATGGCATCCTCGAGAGCCCCACTGGCACTGGGAAGACGCTATG
CCTCCTCTGCACTACATTGGCCTGGCGGGAACATCTCCGAGATGCCGTTTCTTCCCTAAAGATT
GCTGAGAGAGTTCAAGGGGAACTCTTTGCCAGTCGGACCTTGTCATCCTGGAGGAGTGCTGCTG
ATGCCAATGGAGACTCAATAGATTGCTACACAGATATCCCAAAGATCATCTATGCTTCTAGAAC
TCACTCACAGCTAACTCAGGTCATCGGTGAGCTTCGGAATACTTCCTACCGGCCCAAGGTGTGT
GTGCTGGGCTCCCGGGAGCAGCTGTGTATTCATCCCGAAGTGAAGAAGCAAGAGAGTAACCACA
TGCAGATCAGTTTGTGCCGTAAGAAGGTGGCAAGTCGCTCCTGTCATTTCTACAACAATGTGGA
AGAGAAAAGCCTGGAGCAAGAGCTGGCTACCCCCATCTTGGATATTGAGGACCTTGTGAAGAAC
GGAAGCAAACACAAAGTGTGCCCATACTACCTCTCTCGAAACCTGAAGCAGCAAGCTGATATCA
TCTTTATGCCATACAATTACTTGTTGGATGCTAAGAGTCGTAAGGCACACAACATTGACCTGAA
GGGAACGGTTGTAATCTTTGATGAAGCTCACAATGTGGAAAAGATATGTGAGGAGTCAGCCTCC
TTTGACTTGACTCCCCGAGATGTGGCTTCAGGACTGGAGGTTATCAACCAGGTTTTGGAGGAGC
AAGCCCGGGTGGCTCAGCATGGTGAACTCCAACAGGAGTTCATTATAGACACGTCCAGCTCAGG
TCTCAACATGGAGCTGGAAGACATCGCAAAGTTGAAGATGATCCTGCTGCACCTGGAGGAGGCT
ATTGATGCTGTTCAGCTGCCTGGGGATGACAGAGGAGTCACCAAACCTGGAAGCTACATCTTCG
AGCTGTTTGCTGAAGCACAAATAACATTTCAAACCAAAGGCTGCATTTTGGAGTCGCTGGACCA
GATAATCCAGCACCTGACAGGACGCACTGGTGTGTTCACCAACACGGCTGGGTTGCAGAAGCTC
ATGGACATTATCCAGATTGTGTTCAGCGTGGACCCTCTGGAAGGCAGCCCTGGTTCTCAGGTGG
GGCTGGGTAGCTCACATTTCTATAAGGTACACATACACCCTGAAACCAGCCACCGGAGAGCAGC
TCAGCGGTCAGATGCCTGGAGTACCACTGCATCCAGGAAACAAGGGAAGGTGCTGAGCTATTGG
TGCTTCAGTCCCAGCCACAGCATGCGTGAACTGGTCCAGCAAGGAGTCCGTACCCTTATCCTCA
CCAGTGGTACACTGGCTCCGCTGTCTTCCTTTGCTCTGGAGATGCAAATTCCATTCCCAGTCTG
TCTGGAGAATCCACACATCATTGACAAGAACCAGCTCTGGGTAGGGGTTATCCCCAGAGGACCT
GATGGTGTTCAGCTAAGCTCTGCCTATGACAAAAGGTTTTCTGAAGAGTGCTTATCTTCCCTGG
GGAAGGCTCTGGGCAACATTGCTCGTGTGGTGCCCCATGGGCTTCTGGTCTTCTTCCCTTCCTA
CCCTGTCATGGAGAAAAGCCTGGAGTTCTGGCAGGCGCAAGGCATGTCCAAAAAGGTAGAGGCA
CTGAAGCCTCTATTCGTGGAACCCAGGAACAAAGGCAGCTTCTCAGAGGTCATTGATGCCTACT
ACCAGCAAGTTGCCTCCCCTGGGTCTAATGGGGCCACCTTCTTAGCAGTGTGTCGAGGAAAGGC
CAGTGAAGGGCTGGACTTCTCAGACATGAATGGTCGTGGTGTGATTGTCACGGGCCTCCCATAT
CCCCCACGCATGGATCCCCGTGTTATCCTCAAGATGCAGTTCTTGGATGAGATGAAAGGCCGGA
GTAGGGTTGGAGGCCAGTGCCTCTCTGGACAGGAATGGTACCAGCAACAAGCATCCAGGGCTGT
GAACCAGGCTATTGGGAGGGTTATCCGACACCGCCATGACTATGGGGCCATCTTCTTATGTGAC
CACAGGTTTGCCTATGCTGATGCCAGGGCCCATCTGCCCTCCTGGGTGCGCCCCTACCTCAAGG
TGTATGACAACTTTGGCCGTGTCATCCGAGATGTGGCCCAGTTCTTCCGTGTTGCTCAGAAAGC
TATGCCTTTGCCAGTTCCTCAGGCTGTGACCTCAAGTGTGAGTGAGGGAGAAGCTGCTGTCAAG
GAGGCCACATTGTCCAGCCACTCCCTCTCCACCAGGAAAGCCATGAGCTTGGATGTGCATGTGC
CCAGCCTGAGGCGGAGGCCCGTAGGATTACCGACTGCTGGAGACTCCGAGAGCAGCGTATGTGT
GGAGTATGAGCAGCAGACATTTTCTGCCCAGAAGAGACCCATGGGGCTGCTAGCTGCCTTAGAG
TACAACGAGCAGAAGGCTGGGGCATCTGAGGAGCAGGCACTCAGCTCCTCCACCCCATCTCTCC
GGTGTGAAAAGAGGCTGTCCGTTGAGCAAAGAGGAGGAAAGAAGAAAGTCAGGCTGGTCAACCA
TCCGGAGGAACCAGTGGCTGGCACACAGGCAGGCAGAGCCAAGATGTTCATGGTGGCCGTGAAG
CAAGCACTGAGCCAAGCTAACTTTGACACCTTTACCCAGGCCCTGCAGCACTATAAGAGTTCTG
ATGACTTTGAAGCCCTAGTGGCCTCTCTCACCTGCCTCTTTGCTGAAGACCCCAAGAAACACAC
CCTACTTAAAGGTTTCTACCAGTTTGTACGACCCCACCACAAGCAGCAGTTTGAGGACATCTGC
TTCCAGCTAACAGGCCAACGATGTAGCTACCAGCCAGGAAACAGCCTTCCCTTTGGAGAGCAAG
CACAGTCAACTGCCAGAAGGAGAGAGCTGGAATCTAAACTGACCTTGTCTGAAGGTGCAGATAG
GCAGCTGGATCCTGGAGAGCACCTGAATCAGGGGTGGCCTCACCTGTCTACCCATCTAACCTCC
AAAGGAGACACCAGCAATTGTCCAAAAGTGGGATGTGTGGGAGAAAAACCTGGCCAGCCTGCTG
TGAATGACTACCTATCTGACGTCCACAAAGCTCTGGGATCTGCAAGCTGCAACCAGCTTACGGC
AGCTCTGAGGGCATACAAACAGGATGATGACCTGGACAAAGTGCTGGCTGTGGTGGCAGCATTG
ACCACTGCAAAACCTGAACACTTATCTTTGCTACAGAGATTTGGCATGTTTATACGTCGGCATC
ATAAGCCTCGGTTTGTACAGACCTGTGCAGACCTAATGGGCCTACCTACCATAGGCAAGGGCTT
GGAGCTCCCATGTCCCAGGGATGAGAGTACAACTGTGCCTTCTGAGCTTACTCATGAGGACATG
AAACCAGGGCCCTCGACGTCCAAGAAACCTGAGAAGACCCAGAGTAAGATCTCATCCTTCCTTA
GACAGAGGCCAGACCAGAGTGCGAGGTCTGATGATACCATAATGCAGCTTCCTCCCAGACTACC
CCCTGAACACACGACGTCTCAGTGGAATTTTGTATGCCCAGCCTGTGCAACTGAGGATACAGTG
CTTTTCCAGTGCCCTTCCTGTGACTTCTGCCGCTGCCGGGCCTGCTGGCAACGTCAACTCCAGG
AAGCAGAGCATTGCACAGGTCATCTGGCCGAAGCCCCAGTGAACACAGATGATGGCCTTTGCTG
GCCCAGATGCGGCTAAATCCACTGTAGCTCTCATGCTCAGCTGTCCAATGGAATCTACTTGTGA
AGTCTTAAAACTTCAAATATATTGGCATCGCACACATATTACTGAAGGTATAGACTGTTCAATA
AAATTAACAGTTGTCAGGA

hide sequence

RefSeq Acc Id:

XM_006235775 ⟹ XP_006235837

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,807,932 - 188,842,877 (+)	NCBI
mRatBN7.2	3	168,430,386 - 168,465,349 (+)	NCBI
Rnor_6.0	3	176,821,599 - 176,856,531 (+)	NCBI
Rnor_5.0	3	180,528,554 - 180,566,701 (+)	NCBI

Sequence:

show sequence

AGGGAGAAAACGGAAGTGTATCATTTAGGCGGGGCTACACGGATCTGCCCGCGAAGTTCCAATC
AGCAGACTGCGGAGCACGCGGGGGTCGGCGTCTTTACAATTGATTGACTTCGGATTTTGCAAGG
CACCCCCACCGAGACAAGGAATTCCTGCAGAGAGAAACCTGGTGCCACATGCTGCCAGCACTTA
ACCTGGAGCGGCTGAAACACTGAGATGTTCAGAGGGGTTTCTCTGACAGACCCAAACAGCCTGC
ATCTTGGCCTACCACCGTGTCTTCCTCAGTATAGGCTGATATGCCCAGGGTAGTCCTGAATGGT
GTGACAGTGGATTTCCCTTTCCAGCCCTACCCATGCCAGCAGGAATATATGACCAAGGTGCTAG
AATGTCTCCAGAAGAAAGTGAATGGCATCCTCGAGAGCCCCACTGGCACTGGGAAGACGCTATG
CCTCCTCTGCACTACATTGGCCTGGCGGGAACATCTCCGAGATGCCGTTTCTTCCCTAAAGATT
GCTGAGAGAGTTCAAGGGGAACTCTTTGCCAGTCGGACCTTGTCATCCTGGAGGAGTGCTGCTG
ATGCCAATGGAGACTCAATAGATTGCTACACAGATATCCCAAAGATCATCTATGCTTCTAGAAC
TCACTCACAGCTAACTCAGGTCATCGGTGAGCTTCGGAATACTTCCTACCGGCCCAAGGTGTGT
GTGCTGGGCTCCCGGGAGCAGCTGTGTATTCATCCCGAAGTGAAGAAGCAAGAGAGTAACCACA
TGCAGATCAGTTTGTGCCGTAAGAAGGTGGCAAGTCGCTCCTGTCATTTCTACAACAATGTGGA
AGAGAAAAGCCTGGAGCAAGAGCTGGCTACCCCCATCTTGGATATTGAGGACCTTGTGAAGAAC
GGAAGCAAACACAAAGTGTGCCCATACTACCTCTCTCGAAACCTGAAGCAGCAAGCTGATATCA
TCTTTATGCCATACAATTACTTGTTGGATGCTAAGAGTCGTAAGGCACACAACATTGACCTGAA
GGGAACGGTTGTAATCTTTGATGAAGCTCACAATGTGGAAAAGATATGTGAGGAGTCAGCCTCC
TTTGACTTGACTCCCCGAGATGTGGCTTCAGGACTGGAGGTTATCAACCAGGTTTTGGAGGAGC
AAGCCCGGGTGGCTCAGCATGGTGAACTCCAACAGGAGTTCATTATAGACACGTCCAGCTCAGG
TCTCAACATGGAGCTGGAAGACATCGCAAAGTTGAAGATGATCCTGCTGCACCTGGAGGAGGCT
ATTGATGCTGTTCAGCTGCCTGGGGATGACAGAGGAGTCACCAAACCTGGAAGCTACATCTTCG
AGCTGTTTGCTGAAGCACAAATAACATTTCAAACCAAAGGCTGCATTTTGGAGTCGCTGGACCA
GATAATCCAGCACCTGACAGGACGCACTGGTGTGTTCACCAACACGGCTGGGTTGCAGAAGCTC
ATGGACATTATCCAGATTGTGTTCAGCGTGGACCCTCTGGAAGGCAGCCCTGGTTCTCAGGTGG
GGCTGGGTAGCTCACATTTCTATAAGGTACACATACACCCTGAAACCAGCCACCGGAGAGCAGC
TCAGCGGTCAGATGCCTGGAGTACCACTGCATCCAGGAAACAAGGGAAGGTGCTGAGCTATTGG
TGCTTCAGTCCCAGCCACAGCATGCGTGAACTGGTCCAGCAAGGAGTCCGTACCCTTATCCTCA
CCAGTGGTACACTGGCTCCGCTGTCTTCCTTTGCTCTGGAGATGCAAATTCCATTCCCAGTCTG
TCTGGAGAATCCACACATCATTGACAAGAACCAGCTCTGGGTAGGGGTTATCCCCAGAGGACCT
GATGGTGTTCAGCTAAGCTCTGCCTATGACAAAAGGTTTTCTGAAGAGTGCTTATCTTCCCTGG
GGAAGGCTCTGGGCAACATTGCTCGTGTGGTGCCCCATGGGCTTCTGGTCTTCTTCCCTTCCTA
CCCTGTCATGGAGAAAAGCCTGGAGTTCTGGCAGGCGCAAGGCATGTCCAAAAAGGTAGAGGCA
CTGAAGCCTCTATTCGTGGAACCCAGGAACAAAGGCAGCTTCTCAGAGGTCATTGATGCCTACT
ACCAGCAAGTTGCCTCCCCTGGGTCTAATGGGGCCACCTTCTTAGCAGTGTGTCGAGGAAAGGC
CAGTGAAGGGCTGGACTTCTCAGACATGAATGGTCGTGGTGTGATTGTCACGGGCCTCCCATAT
CCCCCACGCATGGATCCCCGTGTTATCCTCAAGATGCAGTTCTTGGATGAGATGAAAGGCCGGA
GTAGGGTTGGAGGCCAGTGCCTCTCTGGACAGGAATGGTACCAGCAACAAGCATCCAGGGCTGT
GAACCAGGCTATTGGGAGGGTTATCCGACACCGCCATGACTATGGGGCCATCTTCTTATGTGAC
CACAGGTTTGCCTATGCTGATGCCAGGGCCCATCTGCCCTCCTGGGTGCGCCCCTACCTCAAGG
TGTATGACAACTTTGGCCGTGTCATCCGAGATGTGGCCCAGTTCTTCCGTGTTGCTCAGAAAGC
TATGCCTTTGCCAGTTCCTCAGGCTGTGACCTCAAGTGTGAGTGAGGGAGAAGCTGCTGTCAAG
GAGGCCACATTGTCCAGCCACTCCCTCTCCACCAGGAAAGCCATGAGCTTGGATGTGCATGTGC
CCAGCCTGAGGCGGAGGCCCGTAGGATTACCGACTGCTGGAGACTCCGAGAGCAGCGTATGTGT
GGAGTATGAGCAGCAGACATTTTCTGCCCAGAAGAGACCCATGGGGCTGCTAGCTGCCTTAGAG
TACAACGAGCAGAAGGCTGGGGCATCTGAGGAGCAGGCACTCAGCTCCTCCACCCCATCTCTCC
GGTGTGAAAAGAGGCTGTCCGTTGAGCAAAGAGGAGGAAAGAAGAAAGTCAGGCTGGTCAACCA
TCCGGAGGAACCAGTGGCTGGCACACAGGCAGGCAGAGCCAAGATGTTCATGGTGGCCGTGAAG
CAAGCACTGAGCCAAGCTAACTTTGACACCTTTACCCAGGCCCTGCAGCACTATAAGAGTTCTG
ATGACTTTGAAGCCCTAGTGGCCTCTCTCACCTGCCTCTTTGCTGAAGACCCCAAGAAACACAC
CCTACTTAAAGGTTTCTACCAGTTTGTACGACCCCACCACAAGCAGCAGTTTGAGGACATCTGC
TTCCAGCTAACAGGCCAACGATGTAGCTACCAGCCAGGAAACAGCCTTCCCTTTGGAGAGCAAG
CACAGTCAACTGCCAGTGCAGATAGGCAGCTGGATCCTGGAGAGCACCTGAATCAGGGGTGGCC
TCACCTGTCTACCCATCTAACCTCCAAAGGAGACACCAGCAATTGTCCAAAAGTGGGATGTGTG
GGAGAAAAACCTGGCCAGCCTGCTGTGAATGACTACCTATCTGACGTCCACAAAGCTCTGGGAT
CTGCAAGCTGCAACCAGCTTACGGCAGCTCTGAGGGCATACAAACAGGATGATGACCTGGACAA
AGTGCTGGCTGTGGTGGCAGCATTGACCACTGCAAAACCTGAACACTTATCTTTGCTACAGAGA
TTTGGCATGTTTATACGTCGGCATCATAAGCCTCGGTTTGTACAGACCTGTGCAGACCTAATGG
GCCTACCTACCATAGGCAAGGGCTTGGAGCTCCCATGTCCCAGGGATGAGAGTACAACTGTGCC
TTCTGAGCTTACTCATGAGGACATGAAACCAGGGCCCTCGACGTCCAAGAAACCTGAGAAGACC
CAGAGTAAGATCTCATCCTTCCTTAGACAGAGGCCAGACCAGAGTGCGAGGTCTGATGATACCA
TAATGCAGCTTCCTCCCAGACTACCCCCTGAACACACGACGTCTCAGTGGAATTTTGTATGCCC
AGCCTGTGCAACTGAGGATACAGTGCTTTTCCAGTGCCCTTCCTGTGACTTCTGCCGCTGCCGG
GCCTGCTGGCAACGTCAACTCCAGGCCTCTAGACTGTGTCCAGCTTGTGGTGCTGTTAACAGGA
AGCAGAGCATTGCACAGGTCATCTGGCCGAAGCCCCAGTGAACACAGATGATGGCCTTTGCTGG
CCCAGATGCGGCTAAATCCACTGTAGCTCTCATGCTCAGCTGTCCAATGGAATCTACTTGTGAA
GTCTTAAAACTTCAAATATATTGGCATCGCACACATATTACTGAAGGTATAGACTGTTCAATAA
AATTAACAGTTGTCAGGA

hide sequence

RefSeq Acc Id:

XM_006235776 ⟹ XP_006235838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,807,932 - 188,842,877 (+)	NCBI
mRatBN7.2	3	168,430,386 - 168,465,349 (+)	NCBI
Rnor_6.0	3	176,821,599 - 176,856,531 (+)	NCBI
Rnor_5.0	3	180,528,554 - 180,566,701 (+)	NCBI

Sequence:

show sequence

AGGGAGAAAACGGAAGTGTATCATTTAGGCGGGGCTACACGGATCTGCCCGCGAAGTTCCAATC
AGCAGACTGCGGAGCACGCGGGGGTCGGCGTCTTTACAATTGATTGACTTCGGATTTTGCAAGG
CACCCCCACCGAGACAAGGAATTCCTGCAGAGAGAAACCTGGTGCCACATGCTGCCAGCACTTA
ACCTGGAGCGGCTGAAACACTGAGATGTTCAGAGGGGTTTCTCTGACAGACCCAAACAGCCTGC
ATCTTGGCCTACCACCGTGTCTTCCTCAGTATAGGCTGATATGCCCAGGGTAGTCCTGAATGGT
GTGACAGTGGATTTCCCTTTCCAGCCCTACCCATGCCAGCAGGAATATATGACCAAGGTGCTAG
AATGTCTCCAGAAGAAAGTGAATGGCATCCTCGAGAGCCCCACTGGCACTGGGAAGACGCTATG
CCTCCTCTGCACTACATTGGCCTGGCGGGAACATCTCCGAGATGCCGTTTCTTCCCTAAAGATT
GCTGAGAGAGTTCAAGGGGAACTCTTTGCCAGTCGGACCTTGTCATCCTGGAGGAGTGCTGCTG
ATGCCAATGGAGACTCAATAGATTGCTACACAGATATCCCAAAGATCATCTATGCTTCTAGAAC
TCACTCACAGCTAACTCAGGTCATCGGTGAGCTTCGGAATACTTCCTACCGGCCCAAGGTGTGT
GTGCTGGGCTCCCGGGAGCAGCTGTGTATTCATCCCGAAGTGAAGAAGCAAGAGAGTAACCACA
TGCAGATCAGTTTGTGCCGTAAGAAGGTGGCAAGTCGCTCCTGTCATTTCTACAACAATGTGGA
AGAGAAAAGCCTGGAGCAAGAGCTGGCTACCCCCATCTTGGATATTGAGGACCTTGTGAAGAAC
GGAAGCAAACACAAAGTGTGCCCATACTACCTCTCTCGAAACCTGAAGCAGCAAGCTGATATCA
TCTTTATGCCATACAATTACTTGTTGGATGCTAAGAGTCGTAAGGCACACAACATTGACCTGAA
GGGAACGGTTGTAATCTTTGATGAAGCTCACAATGTGGAAAAGATATGTGAGGAGTCAGCCTCC
TTTGACTTGACTCCCCGAGATGTGGCTTCAGGACTGGAGGTTATCAACCAGGTTTTGGAGGAGC
AAGCCCGGGTGGCTCAGCATGGTGAACTCCAACAGGAGTTCATTATAGACACGTCCAGCTCAGG
TCTCAACATGGAGCTGGAAGACATCGCAAAGTTGAAGATGATCCTGCTGCACCTGGAGGAGGCT
ATTGATGCTGTTCAGCTGCCTGGGGATGACAGAGGAGTCACCAAACCTGGAAGCTACATCTTCG
AGCTGTTTGCTGAAGCACAAATAACATTTCAAACCAAAGGCTGCATTTTGGAGTCGCTGGACCA
GATAATCCAGCACCTGACAGGACGCACTGGTGTGTTCACCAACACGGCTGGGTTGCAGAAGCTC
ATGGACATTATCCAGATTGTGTTCAGCGTGGACCCTCTGGAAGGCAGCCCTGGTTCTCAGGTGG
GGCTGGGTAGCTCACATTTCTATAAGGTACACATACACCCTGAAACCAGCCACCGGAGAGCAGC
TCAGCGGTCAGATGCCTGGAGTACCACTGCATCCAGGAAACAAGGGAAGGTGCTGAGCTATTGG
TGCTTCAGTCCCAGCCACAGCATGCGTGAACTGGTCCAGCAAGGAGTCCGTACCCTTATCCTCA
CCAGTGGTACACTGGCTCCGCTGTCTTCCTTTGCTCTGGAGATGCAAATTCCATTCCCAGTCTG
TCTGGAGAATCCACACATCATTGACAAGAACCAGCTCTGGGTAGGGGTTATCCCCAGAGGACCT
GATGGTGTTCAGCTAAGCTCTGCCTATGACAAAAGGTTTTCTGAAGAGTGCTTATCTTCCCTGG
GGAAGGCTCTGGGCAACATTGCTCGTGTGGTGCCCCATGGGCTTCTGGTCTTCTTCCCTTCCTA
CCCTGTCATGGAGAAAAGCCTGGAGTTCTGGCAGGCGCAAGGCATGTCCAAAAAGGTAGAGGCA
CTGAAGCCTCTATTCGTGGAACCCAGGAACAAAGGCAGCTTCTCAGAGGTCATTGATGCCTACT
ACCAGCAAGTTGCCTCCCCTGGGTCTAATGGGGCCACCTTCTTAGCAGTGTGTCGAGGAAAGGC
CAGTGAAGGGCTGGACTTCTCAGACATGAATGGTCGTGGTGTGATTGTCACGGGCCTCCCATAT
CCCCCACGCATGGATCCCCGTGTTATCCTCAAGATGCAGTTCTTGGATGAGATGAAAGGCCGGA
GTAGGGTTGGAGGCCAGTGCCTCTCTGGACAGGAATGGTACCAGCAACAAGCATCCAGGGCTGT
GAACCAGGCTATTGGGAGGGTTATCCGACACCGCCATGACTATGGGGCCATCTTCTTATGTGAC
CACAGGTTTGCCTATGCTGATGCCAGGGCCCATCTGCCCTCCTGGGTGCGCCCCTACCTCAAGG
TGTATGACAACTTTGGCCGTGTCATCCGAGATGTGGCCCAGTTCTTCCGTGTTGCTCAGAAAGC
TATGCCTTTGCCAGTTCCTCAGGCTGTGACCTCAAGTGTGAGTGAGGGAGAAGCTGCTGTCAAG
GAGGCCACATTGTCCAGCCACTCCCTCTCCACCAGGAAAGCCATGAGCTTGGATGTGCATGTGC
CCAGCCTGAGGCGGAGGCCCGTAGGATTACCGACTGCTGGAGACTCCGAGAGCAGCGTATGTGT
GGAGTATGAGCAGCAGACATTTTCTGCCCAGAAGAGACCCATGGGGCTGCTAGCTGCCTTAGAG
TACAACGAGCAGAAGGCTGGGGCATCTGAGGAGCAGGCACTCAGCTCCTCCACCCCATCTCTCC
GGTGTGAAAAGAGGCTGTCCGTTGAGCAAAGAGGAGGAAAGAAGAAAGTCAGGCTGGTCAACCA
TCCGGAGGAACCAGTGGCTGGCACACAGGCAGGCAGAGCCAAGATGTTCATGGTGGCCGTGAAG
CAAGCACTGAGCCAAGCTAACTTTGACACCTTTACCCAGGCCCTGCAGCACTATAAGAGTTCTG
ATGACTTTGAAGCCCTAGTGGCCTCTCTCACCTGCCTCTTTGCTGAAGACCCCAAGAAACACAC
CCTACTTAAAGGTTTCTACCAGTTTGTACGACCCCACCACAAGCAGCAGTTTGAGGACATCTGC
TTCCAGCTAACAGGCCAACGATGTAGCTACCAGCCAGGAAACAGCCTTCCCTTTGGAGAGCAAG
CACAGTCAACTGCCAGAGACACCAGCAATTGTCCAAAAGTGGGATGTGTGGGAGAAAAACCTGG
CCAGCCTGCTGTGAATGACTACCTATCTGACGTCCACAAAGCTCTGGGATCTGCAAGCTGCAAC
CAGCTTACGGCAGCTCTGAGGGCATACAAACAGGATGATGACCTGGACAAAGTGCTGGCTGTGG
TGGCAGCATTGACCACTGCAAAACCTGAACACTTATCTTTGCTACAGAGATTTGGCATGTTTAT
ACGTCGGCATCATAAGCCTCGGTTTGTACAGACCTGTGCAGACCTAATGGGCCTACCTACCATA
GGCAAGGGCTTGGAGCTCCCATGTCCCAGGGATGAGAGTACAACTGTGCCTTCTGAGCTTACTC
ATGAGGACATGAAACCAGGGCCCTCGACGTCCAAGAAACCTGAGAAGACCCAGAGTAAGATCTC
ATCCTTCCTTAGACAGAGGCCAGACCAGAGTGCGAGGTCTGATGATACCATAATGCAGCTTCCT
CCCAGACTACCCCCTGAACACACGACGTCTCAGTGGAATTTTGTATGCCCAGCCTGTGCAACTG
AGGATACAGTGCTTTTCCAGTGCCCTTCCTGTGACTTCTGCCGCTGCCGGGCCTGCTGGCAACG
TCAACTCCAGGCCTCTAGACTGTGTCCAGCTTGTGGTGCTGTTAACAGGAAGCAGAGCATTGCA
CAGGTCATCTGGCCGAAGCCCCAGTGAACACAGATGATGGCCTTTGCTGGCCCAGATGCGGCTA
AATCCACTGTAGCTCTCATGCTCAGCTGTCCAATGGAATCTACTTGTGAAGTCTTAAAACTTCA
AATATATTGGCATCGCACACATATTACTGAAGGTATAGACTGTTCAATAAAATTAACAGTTGTC
AGGA

hide sequence

RefSeq Acc Id:

XM_006235778 ⟹ XP_006235840

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,819,568 - 188,842,877 (+)	NCBI
mRatBN7.2	3	168,442,020 - 168,465,349 (+)	NCBI
Rnor_6.0	3	176,833,240 - 176,856,531 (+)	NCBI
Rnor_5.0	3	180,528,554 - 180,566,701 (+)	NCBI

Sequence:

show sequence

TGGGCAGGAGAAAAGTTTTAGAGAGGAGAGGAGACCGGAGCAAGAGGGGAAGAGCAGCCTAGAA
AAGATGGAGGCGGATGTCACGATTTCTCTCTGCACACTTACAGAGTCGTAAGGCACACAACATT
GACCTGAAGGGAACGGTTGTAATCTTTGATGAAGCTCACAATGTGGAAAAGATATGTGAGGAGT
CAGCCTCCTTTGACTTGACTCCCCGAGATGTGGCTTCAGGACTGGAGGTTATCAACCAGGTTTT
GGAGGAGCAAGCCCGGGTGGCTCAGCATGGTGAACTCCAACAGGAGTTCATTATAGACACGTCC
AGCTCAGGTCTCAACATGGAGCTGGAAGACATCGCAAAGTTGAAGATGATCCTGCTGCACCTGG
AGGAGGCTATTGATGCTGTTCAGCTGCCTGGGGATGACAGAGGAGTCACCAAACCTGGAAGCTA
CATCTTCGAGCTGTTTGCTGAAGCACAAATAACATTTCAAACCAAAGGCTGCATTTTGGAGTCG
CTGGACCAGATAATCCAGCACCTGACAGGACGCACTGGTGTGTTCACCAACACGGCTGGGTTGC
AGAAGCTCATGGACATTATCCAGATTGTGTTCAGCGTGGACCCTCTGGAAGGCAGCCCTGGTTC
TCAGGTGGGGCTGGGTAGCTCACATTTCTATAAGGTACACATACACCCTGAAACCAGCCACCGG
AGAGCAGCTCAGCGGTCAGATGCCTGGAGTACCACTGCATCCAGGAAACAAGGGAAGGTGCTGA
GCTATTGGTGCTTCAGTCCCAGCCACAGCATGCGTGAACTGGTCCAGCAAGGAGTCCGTACCCT
TATCCTCACCAGTGGTACACTGGCTCCGCTGTCTTCCTTTGCTCTGGAGATGCAAATTCCATTC
CCAGTCTGTCTGGAGAATCCACACATCATTGACAAGAACCAGCTCTGGGTAGGGGTTATCCCCA
GAGGACCTGATGGTGTTCAGCTAAGCTCTGCCTATGACAAAAGGTTTTCTGAAGAGTGCTTATC
TTCCCTGGGGAAGGCTCTGGGCAACATTGCTCGTGTGGTGCCCCATGGGCTTCTGGTCTTCTTC
CCTTCCTACCCTGTCATGGAGAAAAGCCTGGAGTTCTGGCAGGCGCAAGGCATGTCCAAAAAGG
TAGAGGCACTGAAGCCTCTATTCGTGGAACCCAGGAACAAAGGCAGCTTCTCAGAGGTCATTGA
TGCCTACTACCAGCAAGTTGCCTCCCCTGGGTCTAATGGGGCCACCTTCTTAGCAGTGTGTCGA
GGAAAGGCCAGTGAAGGGCTGGACTTCTCAGACATGAATGGTCGTGGTGTGATTGTCACGGGCC
TCCCATATCCCCCACGCATGGATCCCCGTGTTATCCTCAAGATGCAGTTCTTGGATGAGATGAA
AGGCCGGAGTAGGGTTGGAGGCCAGTGCCTCTCTGGACAGGAATGGTACCAGCAACAAGCATCC
AGGGCTGTGAACCAGGCTATTGGGAGGGTTATCCGACACCGCCATGACTATGGGGCCATCTTCT
TATGTGACCACAGGTTTGCCTATGCTGATGCCAGGGCCCATCTGCCCTCCTGGGTGCGCCCCTA
CCTCAAGGTGTATGACAACTTTGGCCGTGTCATCCGAGATGTGGCCCAGTTCTTCCGTGTTGCT
CAGAAAGCTATGCCTTTGCCAGTTCCTCAGGCTGTGACCTCAAGTGTGAGTGAGGGAGAAGCTG
CTGTCAAGGAGGCCACATTGTCCAGCCACTCCCTCTCCACCAGGAAAGCCATGAGCTTGGATGT
GCATGTGCCCAGCCTGAGGCGGAGGCCCGTAGGATTACCGACTGCTGGAGACTCCGAGAGCAGC
GTATGTGTGGAGTATGAGCAGCAGACATTTTCTGCCCAGAAGAGACCCATGGGGCTGCTAGCTG
CCTTAGAGTACAACGAGCAGAAGGCTGGGGCATCTGAGGAGCAGGCACTCAGCTCCTCCACCCC
ATCTCTCCGGTGTGAAAAGAGGCTGTCCGTTGAGCAAAGAGGAGGAAAGAAGAAAGTCAGGCTG
GTCAACCATCCGGAGGAACCAGTGGCTGGCACACAGGCAGGCAGAGCCAAGATGTTCATGGTGG
CCGTGAAGCAAGCACTGAGCCAAGCTAACTTTGACACCTTTACCCAGGCCCTGCAGCACTATAA
GAGTTCTGATGACTTTGAAGCCCTAGTGGCCTCTCTCACCTGCCTCTTTGCTGAAGACCCCAAG
AAACACACCCTACTTAAAGGTTTCTACCAGTTTGTACGACCCCACCACAAGCAGCAGTTTGAGG
ACATCTGCTTCCAGCTAACAGGCCAACGATGTAGCTACCAGCCAGGAAACAGCCTTCCCTTTGG
AGAGCAAGCACAGTCAACTGCCAGAAGGAGAGAGCTGGAATCTAAACTGACCTTGTCTGAAGGT
GCAGATAGGCAGCTGGATCCTGGAGAGCACCTGAATCAGGGGTGGCCTCACCTGTCTACCCATC
TAACCTCCAAAGGAGACACCAGCAATTGTCCAAAAGTGGGATGTGTGGGAGAAAAACCTGGCCA
GCCTGCTGTGAATGACTACCTATCTGACGTCCACAAAGCTCTGGGATCTGCAAGCTGCAACCAG
CTTACGGCAGCTCTGAGGGCATACAAACAGGATGATGACCTGGACAAAGTGCTGGCTGTGGTGG
CAGCATTGACCACTGCAAAACCTGAACACTTATCTTTGCTACAGAGATTTGGCATGTTTATACG
TCGGCATCATAAGCCTCGGTTTGTACAGACCTGTGCAGACCTAATGGGCCTACCTACCATAGGC
AAGGGCTTGGAGCTCCCATGTCCCAGGGATGAGAGTACAACTGTGCCTTCTGAGCTTACTCATG
AGGACATGAAACCAGGGCCCTCGACGTCCAAGAAACCTGAGAAGACCCAGAGTAAGATCTCATC
CTTCCTTAGACAGAGGCCAGACCAGAGTGCGAGGTCTGATGATACCATAATGCAGCTTCCTCCC
AGACTACCCCCTGAACACACGACGTCTCAGTGGAATTTTGTATGCCCAGCCTGTGCAACTGAGG
ATACAGTGCTTTTCCAGTGCCCTTCCTGTGACTTCTGCCGCTGCCGGGCCTGCTGGCAACGTCA
ACTCCAGGCCTCTAGACTGTGTCCAGCTTGTGGTGCTGTTAACAGGAAGCAGAGCATTGCACAG
GTCATCTGGCCGAAGCCCCAGTGAACACAGATGATGGCCTTTGCTGGCCCAGATGCGGCTAAAT
CCACTGTAGCTCTCATGCTCAGCTGTCCAATGGAATCTACTTGTGAAGTCTTAAAACTTCAAAT
ATATTGGCATCGCACACATATTACTGAAGGTATAGACTGTTCAATAAAATTAACAGTTGTCAGG
A

hide sequence

RefSeq Acc Id:

XM_039105561 ⟹ XP_038961489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,808,172 - 188,842,877 (+)	NCBI
mRatBN7.2	3	168,430,617 - 168,465,349 (+)	NCBI

RefSeq Acc Id:

XM_039105563 ⟹ XP_038961491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,807,932 - 188,841,431 (+)	NCBI
mRatBN7.2	3	168,430,386 - 168,464,064 (+)	NCBI

RefSeq Acc Id:

XM_039105568 ⟹ XP_038961496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,834,144 - 188,842,877 (+)	NCBI
mRatBN7.2	3	168,456,625 - 168,465,349 (+)	NCBI

RefSeq Acc Id:

XM_063284242 ⟹ XP_063140312

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,778,329 - 188,842,877 (+)	NCBI

RefSeq Acc Id:

XM_063284243 ⟹ XP_063140313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,807,932 - 188,842,877 (+)	NCBI

RefSeq Acc Id:

XM_063284244 ⟹ XP_063140314

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,811,258 - 188,842,877 (+)	NCBI

RefSeq Acc Id:

XM_063284245 ⟹ XP_063140315

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,813,627 - 188,842,877 (+)	NCBI

RefSeq Acc Id:

XM_063284247 ⟹ XP_063140317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,833,315 - 188,842,877 (+)	NCBI

RefSeq Acc Id:

XR_010064670

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,807,932 - 188,836,021 (+)	NCBI

RefSeq Acc Id:

XR_010064671

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,807,932 - 188,836,021 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178786	(Get FASTA)	NCBI Sequence Viewer
	NP_001421322	(Get FASTA)	NCBI Sequence Viewer
	NP_001421323	(Get FASTA)	NCBI Sequence Viewer
	NP_001421324	(Get FASTA)	NCBI Sequence Viewer
	NP_001421325	(Get FASTA)	NCBI Sequence Viewer
	NP_001421326	(Get FASTA)	NCBI Sequence Viewer
	NP_001421328	(Get FASTA)	NCBI Sequence Viewer
	XP_006235834	(Get FASTA)	NCBI Sequence Viewer
	XP_006235835	(Get FASTA)	NCBI Sequence Viewer
	XP_006235836	(Get FASTA)	NCBI Sequence Viewer
	XP_006235837	(Get FASTA)	NCBI Sequence Viewer
	XP_006235838	(Get FASTA)	NCBI Sequence Viewer
	XP_006235840	(Get FASTA)	NCBI Sequence Viewer
	XP_038961489	(Get FASTA)	NCBI Sequence Viewer
	XP_038961491	(Get FASTA)	NCBI Sequence Viewer
	XP_038961496	(Get FASTA)	NCBI Sequence Viewer
	XP_063140312	(Get FASTA)	NCBI Sequence Viewer
	XP_063140313	(Get FASTA)	NCBI Sequence Viewer
	XP_063140314	(Get FASTA)	NCBI Sequence Viewer
	XP_063140315	(Get FASTA)	NCBI Sequence Viewer
	XP_063140317	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86436	(Get FASTA)	NCBI Sequence Viewer
	AAI61910	(Get FASTA)	NCBI Sequence Viewer
	EDL88727	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051909
	ENSRNOP00000051909.3
	ENSRNOP00000088333
	ENSRNOP00000094899
GenBank Protein	Q5RJZ1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001178786 ⟸ NM_001191857

- UniProtKB:

Q5RJZ1 (UniProtKB/Swiss-Prot), A0A8I6AMG5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR
DAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQVIGELRN
TSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKKVASRSCHFYNNVEEKSLEQELATPIL
DIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNIDLKGTVVIFDEAHNVE
KICEESASFDLTPRDVASGLEVINQVLEEQARVAQHGELQQEFIIDTSSSGLNMELEDIAKLKM
ILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQTKGCILESLDQIIQHLTGRTGVFT
NTAGLQKLMDIIQIVFSVDPLEGSPGSQVGLGSSHFYKVHIHPETSHRRAAQRSDAWSTTASRK
QGKVLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQLW
VGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQ
GMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRG
VIVTGLPYPPRMDPRVILKMQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHD
YGAIFLCDHRFAYADARAHLPSWVRPYLKVYDNFGRVIRDVAQFFRVAQKAMPLPVPQAVTSSV
SEGEAAVKEATLSSHSLSTRKAMSLDVHVPSLRRRPVGLPTAGDSESSVCVEYEQQTFSAQKRP
MGLLAALEYNEQKAGASEEQALSSSTPSLRCEKRLSVEQRGGKKKVRLVNHPEEPVAGTQAGRA
KMFMVAVKQALSQANFDTFTQALQHYKSSDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHH
KQQFEDICFQLTGQRCSYQPGNSLPFGEQAQSTASKQGRRELESKLTLSEGADRQLDPGEHLNQ
GWPHLSTHLTSKGDTSNCPKVGCVGEKPGQPAVNDYLSDVHKALGSASCNQLTAALRAYKQDDD
LDKVLAVVAALTTAKPEHLSLLQRFGMFIRRHHKPRFVQTCADLMGLPTIGKGLELPCPRDEST
TVPSELTHEDMKPGPSTSKKPEKTQSKISSFLRQRPDQSARSDDTIMQLPPRLPPEHTTSQWNF
VCPACATEDTVLFQCPSCDFCRCRACWQRQLQASRLCPACGAVNRKQSIAQVIWPKPQ

hide sequence

RefSeq Acc Id:	XP_006235835 ⟸ XM_006235773
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JVG0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR DAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQVIGELRN TSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKKVASRSCHFYNNVEEKSLEQELATPIL DIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNIDLKGTVVIFDEAHNVE KICEESASFDLTPRDVASGLEVINQVLEEQARVAQHGELQQEFIIDTSSSGLNMELEDIAKLKM ILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQTKGCILESLDQIIQHLTGRTGVFT NTAGLQKLMDIIQIVFSVDPLEGSPGSQVGLGSSHFYKVHIHPETSHRRAAQRSDAWSTTASRK QGKVLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQLW VGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQ GMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRG VIVTGLPYPPRMDPRVILKMQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHD YGAIFLCDHRFAYADARAHLPSWVRPYLKVYDNFGRVIRDVAQFFRVAQKAMPLPVPQAVTSSV SEGEAAVKEATLSSHSLSTRKAMSLDVHVPSLRRRPVGLPTAGDSESSVCVEYEQQTFSAQKRP MGLLAALEYNEQKAGASEEQALSSSTPSLRCEKRLSVEQRGGKKKVRLVNHPEEPVAGTQAGRA KMFMVAVKQALSQANFDTFTQALQHYKSSDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHH KQQFEDICFQLTGQRCSYQPGNSLPFGEQAQSTARRRELESKLTLSEGADRQLDPGEHLNQGWP HLSTHLTSKGDTSNCPKVGCVGEKPGQPAVNDYLSDVHKALGSASCNQLTAALRAYKQDDDLDK VLAVVAALTTAKPEHLSLLQRFGMFIRRHHKPRFVQTCADLMGLPTIGKGLELPCPRDESTTVP SELTHEDMKPGPSTSKKPEKTQSKISSFLRQRPDQSARSDDTIMQLPPRLPPEHTTSQWNFVCP ACATEDTVLFQCPSCDFCRCRACWQRQLQASRLCPACGAVNRKQSIAQVIWPKPQ hide sequence

RefSeq Acc Id:

XP_006235834 ⟸ XM_006235772

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR
DAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQVIGELRN
TSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKKVASRSCHFYNNVEEKSLEQELATPIL
DIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNIDLKGTVVIFDEAHNVE
KICEESASFDLTPRDVASGLEVINQVLEEQARVAQHGELQQEFIIDTSSSGLNMELEDIAKLKM
ILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQTKGCILESLDQIIQHLTGRTGVFT
NTAGLQKLMDIIQIVFSVDPLEGSPGSQVGLGSSHFYKVHIHPETSHRRAAQRSDAWSTTASRK
QGKVLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQLW
VGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQ
GMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRG
VIVTGLPYPPRMDPRVILKMQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHD
YGAIFLCDHRFAYADARAHLPSWVRPYLKVYDNFGRVIRDVAQFFRVAQKAMPLPVPQAVTSSV
SEGEAAVKEATLSSHSLSTRKAMSLDVHVPSLRRRPVGLPTAGDSESSVCVEYEQQTFSAQKRP
MGLLAALEYNEQKAGASEEQALSSSTPSLRCEKRLSVEQRGGKKKVRLVNHPEEPVAGTQAGRA
KMFMVAVKQALSQANFDTFTQALQHYKSSDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHH
KQQFEDICFQLTGQRCSYQPGNSLPFGEQAQSTARRRELESKLTLSEGADRQLDPGEHLNQGWP
HLSTHLTSKGDTSNCPKVGCVGEKPGQPAVNDYLSDVHKALGSASCNQLTAALRAYKQDDDLDK
VLAVVAALTTAKPEHLSLLQRFGMFIRRHHKPRFVQTCADLMGLPTIGKGLELPCPRDESTTVP
SELTHEDMKPGPSTSKKPEKTQSKISSFLRQRPDQSARSDDTIMQLPPRLPPEHTTSQWNFVCP
ACATEDTVLFQCPSCDFCRCRACWQRQLQASRLCPACGAVNRKQSIAQVIWPKPQ

hide sequence

RefSeq Acc Id:	XP_006235836 ⟸ XM_006235774
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JVG0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR DAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQVIGELRN TSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKKVASRSCHFYNNVEEKSLEQELATPIL DIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNIDLKGTVVIFDEAHNVE KICEESASFDLTPRDVASGLEVINQVLEEQARVAQHGELQQEFIIDTSSSGLNMELEDIAKLKM ILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQTKGCILESLDQIIQHLTGRTGVFT NTAGLQKLMDIIQIVFSVDPLEGSPGSQVGLGSSHFYKVHIHPETSHRRAAQRSDAWSTTASRK QGKVLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQLW VGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQ GMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRG VIVTGLPYPPRMDPRVILKMQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHD YGAIFLCDHRFAYADARAHLPSWVRPYLKVYDNFGRVIRDVAQFFRVAQKAMPLPVPQAVTSSV SEGEAAVKEATLSSHSLSTRKAMSLDVHVPSLRRRPVGLPTAGDSESSVCVEYEQQTFSAQKRP MGLLAALEYNEQKAGASEEQALSSSTPSLRCEKRLSVEQRGGKKKVRLVNHPEEPVAGTQAGRA KMFMVAVKQALSQANFDTFTQALQHYKSSDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHH KQQFEDICFQLTGQRCSYQPGNSLPFGEQAQSTARRRELESKLTLSEGADRQLDPGEHLNQGWP HLSTHLTSKGDTSNCPKVGCVGEKPGQPAVNDYLSDVHKALGSASCNQLTAALRAYKQDDDLDK VLAVVAALTTAKPEHLSLLQRFGMFIRRHHKPRFVQTCADLMGLPTIGKGLELPCPRDESTTVP SELTHEDMKPGPSTSKKPEKTQSKISSFLRQRPDQSARSDDTIMQLPPRLPPEHTTSQWNFVCP ACATEDTVLFQCPSCDFCRCRACWQRQLQEAEHCTGHLAEAPVNTDDGLCWPRCG hide sequence

RefSeq Acc Id:

XP_006235837 ⟸ XM_006235775

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR
DAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQVIGELRN
TSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKKVASRSCHFYNNVEEKSLEQELATPIL
DIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNIDLKGTVVIFDEAHNVE
KICEESASFDLTPRDVASGLEVINQVLEEQARVAQHGELQQEFIIDTSSSGLNMELEDIAKLKM
ILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQTKGCILESLDQIIQHLTGRTGVFT
NTAGLQKLMDIIQIVFSVDPLEGSPGSQVGLGSSHFYKVHIHPETSHRRAAQRSDAWSTTASRK
QGKVLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQLW
VGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQ
GMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRG
VIVTGLPYPPRMDPRVILKMQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHD
YGAIFLCDHRFAYADARAHLPSWVRPYLKVYDNFGRVIRDVAQFFRVAQKAMPLPVPQAVTSSV
SEGEAAVKEATLSSHSLSTRKAMSLDVHVPSLRRRPVGLPTAGDSESSVCVEYEQQTFSAQKRP
MGLLAALEYNEQKAGASEEQALSSSTPSLRCEKRLSVEQRGGKKKVRLVNHPEEPVAGTQAGRA
KMFMVAVKQALSQANFDTFTQALQHYKSSDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHH
KQQFEDICFQLTGQRCSYQPGNSLPFGEQAQSTASADRQLDPGEHLNQGWPHLSTHLTSKGDTS
NCPKVGCVGEKPGQPAVNDYLSDVHKALGSASCNQLTAALRAYKQDDDLDKVLAVVAALTTAKP
EHLSLLQRFGMFIRRHHKPRFVQTCADLMGLPTIGKGLELPCPRDESTTVPSELTHEDMKPGPS
TSKKPEKTQSKISSFLRQRPDQSARSDDTIMQLPPRLPPEHTTSQWNFVCPACATEDTVLFQCP
SCDFCRCRACWQRQLQASRLCPACGAVNRKQSIAQVIWPKPQ

hide sequence

RefSeq Acc Id:	XP_006235838 ⟸ XM_006235776
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JVG0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRVVLNGVTVDFPFQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCTTLAWREHLR DAVSSLKIAERVQGELFASRTLSSWRSAADANGDSIDCYTDIPKIIYASRTHSQLTQVIGELRN TSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKKVASRSCHFYNNVEEKSLEQELATPIL DIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLLDAKSRKAHNIDLKGTVVIFDEAHNVE KICEESASFDLTPRDVASGLEVINQVLEEQARVAQHGELQQEFIIDTSSSGLNMELEDIAKLKM ILLHLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQTKGCILESLDQIIQHLTGRTGVFT NTAGLQKLMDIIQIVFSVDPLEGSPGSQVGLGSSHFYKVHIHPETSHRRAAQRSDAWSTTASRK QGKVLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKNQLW VGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQ GMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRGKASEGLDFSDMNGRG VIVTGLPYPPRMDPRVILKMQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHD YGAIFLCDHRFAYADARAHLPSWVRPYLKVYDNFGRVIRDVAQFFRVAQKAMPLPVPQAVTSSV SEGEAAVKEATLSSHSLSTRKAMSLDVHVPSLRRRPVGLPTAGDSESSVCVEYEQQTFSAQKRP MGLLAALEYNEQKAGASEEQALSSSTPSLRCEKRLSVEQRGGKKKVRLVNHPEEPVAGTQAGRA KMFMVAVKQALSQANFDTFTQALQHYKSSDDFEALVASLTCLFAEDPKKHTLLKGFYQFVRPHH KQQFEDICFQLTGQRCSYQPGNSLPFGEQAQSTARDTSNCPKVGCVGEKPGQPAVNDYLSDVHK ALGSASCNQLTAALRAYKQDDDLDKVLAVVAALTTAKPEHLSLLQRFGMFIRRHHKPRFVQTCA DLMGLPTIGKGLELPCPRDESTTVPSELTHEDMKPGPSTSKKPEKTQSKISSFLRQRPDQSARS DDTIMQLPPRLPPEHTTSQWNFVCPACATEDTVLFQCPSCDFCRCRACWQRQLQASRLCPACGA VNRKQSIAQVIWPKPQ hide sequence

RefSeq Acc Id:	XP_006235840 ⟸ XM_006235778
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AMG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRFLSAHLQSRKAHNIDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEVINQVLEEQA RVAQHGELQQEFIIDTSSSGLNMELEDIAKLKMILLHLEEAIDAVQLPGDDRGVTKPGSYIFEL FAEAQITFQTKGCILESLDQIIQHLTGRTGVFTNTAGLQKLMDIIQIVFSVDPLEGSPGSQVGL GSSHFYKVHIHPETSHRRAAQRSDAWSTTASRKQGKVLSYWCFSPSHSMRELVQQGVRTLILTS GTLAPLSSFALEMQIPFPVCLENPHIIDKNQLWVGVIPRGPDGVQLSSAYDKRFSEECLSSLGK ALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQGMSKKVEALKPLFVEPRNKGSFSEVIDAYYQ QVASPGSNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVILKMQFLDEMKGRSR VGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAYADARAHLPSWVRPYLKVY DNFGRVIRDVAQFFRVAQKAMPLPVPQAVTSSVSEGEAAVKEATLSSHSLSTRKAMSLDVHVPS LRRRPVGLPTAGDSESSVCVEYEQQTFSAQKRPMGLLAALEYNEQKAGASEEQALSSSTPSLRC EKRLSVEQRGGKKKVRLVNHPEEPVAGTQAGRAKMFMVAVKQALSQANFDTFTQALQHYKSSDD FEALVASLTCLFAEDPKKHTLLKGFYQFVRPHHKQQFEDICFQLTGQRCSYQPGNSLPFGEQAQ STARRRELESKLTLSEGADRQLDPGEHLNQGWPHLSTHLTSKGDTSNCPKVGCVGEKPGQPAVN DYLSDVHKALGSASCNQLTAALRAYKQDDDLDKVLAVVAALTTAKPEHLSLLQRFGMFIRRHHK PRFVQTCADLMGLPTIGKGLELPCPRDESTTVPSELTHEDMKPGPSTSKKPEKTQSKISSFLRQ RPDQSARSDDTIMQLPPRLPPEHTTSQWNFVCPACATEDTVLFQCPSCDFCRCRACWQRQLQAS RLCPACGAVNRKQSIAQVIWPKPQ hide sequence

Ensembl Acc Id:

ENSRNOP00000051909 ⟸ ENSRNOT00000055030

Ensembl Acc Id:

ENSRNOP00000069471 ⟸ ENSRNOT00000087279

RefSeq Acc Id:	XP_038961491 ⟸ XM_039105563
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038961489 ⟸ XM_039105561
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JVG0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961496 ⟸ XM_039105568
- Peptide Label:	isoform X10

Ensembl Acc Id:

ENSRNOP00000087672 ⟸ ENSRNOT00000098630

Ensembl Acc Id:

ENSRNOP00000094899 ⟸ ENSRNOT00000098539

Ensembl Acc Id:

ENSRNOP00000088333 ⟸ ENSRNOT00000100640

RefSeq Acc Id:	XP_063140312 ⟸ XM_063284242
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JVG0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140313 ⟸ XM_063284243
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063140314 ⟸ XM_063284244
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AMG5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140315 ⟸ XM_063284245
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6AMG5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140317 ⟸ XM_063284247
- Peptide Label:	isoform X11

Protein Domains

Helicase ATP-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5RJZ1-F1-model_v2	AlphaFold	Q5RJZ1	1-1274	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692752

Promoter ID:

EPDNEW_R3277

Type:

initiation region

Name:

Rtel1_1

Description:

regulator of telomere elongation helicase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	176,821,632 - 176,821,692	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306721	AgrOrtholog
BioCyc Gene	G2FUF-46291	BioCyc
Ensembl Genes	ENSRNOG00000027513	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000055030	ENTREZGENE
	ENSRNOT00000055030.4	UniProtKB/Swiss-Prot
	ENSRNOT00000098539	ENTREZGENE
	ENSRNOT00000100640	ENTREZGENE
Gene3D-CATH	1.20.1160.20	UniProtKB/Swiss-Prot
	3.40.50.300	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7302407	IMAGE-MGC_LOAD
	IMAGE:8368052	IMAGE-MGC_LOAD
InterPro	ATP-dep_Helicase_C	UniProtKB/Swiss-Prot
	DEAD_2	UniProtKB/Swiss-Prot
	DinG/Rad3-like	UniProtKB/Swiss-Prot
	Helic_SF1/SF2_ATP-bd_DinG/Rad3	UniProtKB/Swiss-Prot
	Helicase-like_DEXD_c2	UniProtKB/Swiss-Prot
	HHD_RTEL1	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	Rad3/Chl1-like	UniProtKB/Swiss-Prot
	RTEL1	UniProtKB/Swiss-Prot
KEGG Report	rno:362288	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105962	IMAGE-MGC_LOAD
	MGC:187633	IMAGE-MGC_LOAD
NCBI Gene	362288	ENTREZGENE
PANTHER	PTHR11472	UniProtKB/Swiss-Prot
	REGULATOR OF TELOMERE ELONGATION HELICASE 1	UniProtKB/Swiss-Prot
Pfam	ARCH_RTEL1	UniProtKB/Swiss-Prot
	DEAD_2	UniProtKB/Swiss-Prot
	Helicase_C_2	UniProtKB/Swiss-Prot
	HHD_RTEL1	UniProtKB/Swiss-Prot
PhenoGen	Rtel1	PhenoGen
PROSITE	HELICASE_ATP_BIND_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000027513	RatGTEx
SMART	DEXDc2	UniProtKB/Swiss-Prot
	HELICc2	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	A0A0G2JVG0	ENTREZGENE
	A0A8I6A605	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8F3	ENTREZGENE
	A0A8I6AMG5	ENTREZGENE, UniProtKB/TrEMBL
	B1WBW1_RAT	UniProtKB/TrEMBL
	Q5RJZ1	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-10-20	Rtel1	regulator of telomere elongation helicase 1	RGD1306721	similar to helicase-like protein NHL isoform 2	Symbol and Name updated to reflect Human and Mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306721	similar to helicase-like protein NHL isoform 2	RGD1306721_predicted	similar to helicase-like protein NHL isoform 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306721_predicted	similar to helicase-like protein NHL isoform 2 (predicted)	LOC362288_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362288_predicted	similar to helicase-like protein NHL isoform 2 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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