Mrpl53 (mitochondrial ribosomal protein L53) - Rat Genome Database

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Gene: Mrpl53 (mitochondrial ribosomal protein L53) Rattus norvegicus
Analyze
Symbol: Mrpl53
Name: mitochondrial ribosomal protein L53
RGD ID: 1306709
Description: Orthologous to human MRPL53 (mitochondrial ribosomal protein L53); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 39S ribosomal protein L53, mitochondrial; large ribosomal subunit protein mL53; LOC103692169; LOC362388
RGD Orthologs
Human
Mouse
Chinchilla
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,173,043 - 117,173,933 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.24115,615,329 - 115,616,219 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx4121,091,950 - 121,092,840 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04116,867,143 - 116,868,033 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04115,481,711 - 115,482,601 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04113,942,037 - 113,942,927 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4113,942,041 - 113,942,674 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl4114,807,765 - 114,808,652 (+)Ensemblrn6Rnor6.0
Rnor_5.04178,627,009 - 178,627,899 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44117,321,318 - 117,322,208 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4104,609,848 - 104,610,738 (+)NCBICelera
RGSC_v3.14117,565,528 - 117,566,686 (+)NCBI
Cytogenetic Map4q34NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18614015   PMID:25278503   PMID:28892042  


Genomics

Comparative Map Data
Mrpl53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,173,043 - 117,173,933 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.24115,615,329 - 115,616,219 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx4121,091,950 - 121,092,840 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04116,867,143 - 116,868,033 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04115,481,711 - 115,482,601 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04113,942,037 - 113,942,927 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4113,942,041 - 113,942,674 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl4114,807,765 - 114,808,652 (+)Ensemblrn6Rnor6.0
Rnor_5.04178,627,009 - 178,627,899 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44117,321,318 - 117,322,208 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4104,609,848 - 104,610,738 (+)NCBICelera
RGSC_v3.14117,565,528 - 117,566,686 (+)NCBI
Cytogenetic Map4q34NCBI
MRPL53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38274,471,982 - 74,472,680 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl274,471,982 - 74,472,687 (-)Ensemblhg38GRCh38
GRCh37274,699,109 - 74,699,807 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,552,617 - 74,553,435 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34274,610,765 - 74,611,582NCBI
Celera274,530,297 - 74,531,115 (-)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef274,435,357 - 74,436,214 (-)NCBIHuRef
CHM1_1274,628,501 - 74,629,358 (-)NCBICHM1_1
T2T-CHM13v2.0274,480,549 - 74,481,247 (-)NCBIT2T-CHM13v2.0
Mrpl53
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,086,089 - 83,086,913 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,086,021 - 83,086,920 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38683,109,108 - 83,109,932 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,109,040 - 83,109,939 (+)Ensemblmm10GRCm38
MGSCv37683,059,102 - 83,059,926 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36683,072,709 - 83,075,597 (+)NCBIMGSCv36mm8
Celera685,091,808 - 85,092,632 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
Mrpl53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,312,778 - 11,314,564 (+)Ensembl
ChiLan1.0NW_00495542411,312,778 - 11,314,564 (+)NCBIChiLan1.0ChiLan1.0
MRPL53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,663,271 - 48,666,078 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,663,598 - 48,664,554 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1748,305,344 - 48,307,970 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01749,522,699 - 49,525,326 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11748,539,822 - 48,542,449 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01748,606,586 - 48,609,212 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01749,164,289 - 49,166,915 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mrpl53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629210,045,414 - 10,046,385 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936556691,511 - 692,563 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936556691,511 - 693,366 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1368,570,198 - 68,573,584 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,848,728 - 71,850,279 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Mrpl53
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474929,035,241 - 29,036,502 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474929,035,274 - 29,035,895 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mrpl53
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1663,114,869 - 63,116,396 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mrpl53
3 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:34
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000011427
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)480212111119233320Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478687630123687630Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4113634167149763391Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat

Markers in Region
RH128382  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24115,615,859 - 115,616,062 (+)MAPPERmRatBN7.2
Rnor_6.04114,808,296 - 114,808,498NCBIRnor6.0
Rnor_6.04113,942,568 - 113,942,770NCBIRnor6.0
Rnor_5.04178,627,540 - 178,627,742UniSTSRnor5.0
RGSC_v3.44117,321,849 - 117,322,051UniSTSRGSC3.4
Celera4104,610,379 - 104,610,581UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
18 1 30 112 67 59 35 79 35 10 252 143 11 89 56 70 24 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000084616   ⟹   ENSRNOP00000070134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4114,807,765 - 114,808,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086051   ⟹   ENSRNOP00000073610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4113,942,041 - 113,942,674 (+)Ensembl
RefSeq Acc Id: NM_001108635   ⟹   NP_001102105
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84117,173,043 - 117,173,933 (+)NCBI
mRatBN7.24115,615,329 - 115,616,219 (+)NCBI
Rnor_6.04113,942,037 - 113,942,927 (+)NCBI
Rnor_5.04178,627,009 - 178,627,899 (+)NCBI
RGSC_v3.44117,321,318 - 117,322,208 (+)RGD
Celera4104,609,848 - 104,610,738 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102105 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66928 (Get FASTA)   NCBI Sequence Viewer  
  EDL91120 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001102105   ⟸   NM_001108635
- UniProtKB: B2RYW4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073610   ⟸   ENSRNOT00000086051
Ensembl Acc Id: ENSRNOP00000070134   ⟸   ENSRNOT00000084616

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYW4-F1-model_v2 AlphaFold B2RYW4 1-119 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306709 AgrOrtholog
BioCyc Gene G2FUF-44027 BioCyc
Ensembl Genes ENSRNOG00000052279 Ensembl
  ENSRNOG00000053109 Ensembl
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6920305 IMAGE-MGC_LOAD
InterPro mtLSU_mL53 UniProtKB/TrEMBL
  Ribosomal_L53_mit UniProtKB/TrEMBL
KEGG Report rno:362388 UniProtKB/TrEMBL
MGC_CLONE MGC:188919 IMAGE-MGC_LOAD
NCBI Gene 362388 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L53, MITOCHONDRIAL UniProtKB/TrEMBL
  39S RIBOSOMAL PROTEIN L53, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam MRP_L53 UniProtKB/TrEMBL
PhenoGen Mrpl53 PhenoGen
RatGTEx ENSRNOG00000052279 RatGTEx
  ENSRNOG00000053109 RatGTEx
UniProt B2RYW4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Mrpl53  mitochondrial ribosomal protein L53  LOC103692169  39S ribosomal protein L53, mitochondrial  Data merged from RGD:9457461 737654 PROVISIONAL
2014-08-25 LOC103692169  39S ribosomal protein L53, mitochondrial      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Mrpl53  mitochondrial ribosomal protein L53   Mrpl53_predicted  mitochondrial ribosomal protein L53 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mrpl53_predicted  mitochondrial ribosomal protein L53 (predicted)      Symbol and Name status set to approved 70820 APPROVED