Slc9d1 (solute carrier family 9 member D1) - Rat Genome Database

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Gene: Slc9d1 (solute carrier family 9 member D1) Rattus norvegicus
Analyze
Symbol: Slc9d1 (Ensembl: Tmco3)
Name: solute carrier family 9 member D1 (Ensembl:transmembrane and coiled-coil domains 3)
RGD ID: 1306586
Description: Predicted to enable potassium:proton antiporter activity and symporter activity. Predicted to be involved in potassium ion transmembrane transport; proton transmembrane transport; and sodium ion transport. Predicted to be located in membrane. Orthologous to human TMCO3 (transmembrane and coiled-coil domains 3); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC103690105; LOC306607; RGD1306586; similar to RIKEN cDNA B230339H12; Tmco3; transmembrane and coiled-coil domain-containing protein 3; transmembrane and coiled-coil domain-containing protein 3-like; transmembrane and coiled-coil domains 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81682,919,324 - 82,956,485 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1682,919,324 - 82,956,485 (-)EnsemblGRCr8
mRatBN7.21676,217,146 - 76,254,309 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,217,201 - 76,254,107 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1681,497,724 - 81,534,890 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01684,950,303 - 84,987,468 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,198,861 - 80,236,320 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,035,001 - 81,072,145 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1680,904,125 - 81,072,145 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1681,549,204 - 81,587,080 (-)Ensemblrn6Rnor6.0
Rnor_5.01681,037,226 - 81,075,420 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01680,467,221 - 80,478,659 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41681,072,647 - 81,111,007 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1674,023,961 - 74,060,922 (-)NCBICelera
RGSC_v3.11681,073,567 - 81,121,965 (-)NCBI
Cytogenetic Map16q12.5NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Slc9d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81682,919,324 - 82,956,485 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1682,919,324 - 82,956,485 (-)EnsemblGRCr8
mRatBN7.21676,217,146 - 76,254,309 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,217,201 - 76,254,107 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1681,497,724 - 81,534,890 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01684,950,303 - 84,987,468 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,198,861 - 80,236,320 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,035,001 - 81,072,145 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1680,904,125 - 81,072,145 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1681,549,204 - 81,587,080 (-)Ensemblrn6Rnor6.0
Rnor_5.01681,037,226 - 81,075,420 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01680,467,221 - 80,478,659 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41681,072,647 - 81,111,007 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1674,023,961 - 74,060,922 (-)NCBICelera
RGSC_v3.11681,073,567 - 81,121,965 (-)NCBI
Cytogenetic Map16q12.5NCBI
SLC9D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813113,491,021 - 113,550,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13113,490,816 - 113,554,590 (+)Ensemblhg38GRCh38
GRCh3713114,145,336 - 114,204,544 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613113,193,309 - 113,252,545 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3413113,193,310 - 113,252,507NCBI
Celera1394,973,299 - 95,032,110 (+)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1394,584,366 - 94,643,515 (+)NCBIHuRef
CHM1_113114,113,053 - 114,173,561 (+)NCBICHM1_1
T2T-CHM13v2.013112,749,864 - 112,809,126 (+)NCBIT2T-CHM13v2.0
Tmco3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39813,333,214 - 13,372,924 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl813,338,190 - 13,372,924 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38813,288,013 - 13,322,924 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl813,288,190 - 13,322,924 (+)Ensemblmm10GRCm38
MGSCv37813,288,013 - 13,322,924 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36813,287,990 - 13,322,901 (+)NCBIMGSCv36mm8
Celera813,456,371 - 13,491,544 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
Slc9d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955404428,584 - 457,551 (-)Ensembl
ChiLan1.0NW_004955404427,987 - 463,176 (-)NCBIChiLan1.0ChiLan1.0
SLC9D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214114,998,173 - 115,060,572 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113113,687,614 - 113,749,892 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01394,635,777 - 94,698,015 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113113,693,949 - 113,752,667 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13113,693,949 - 113,752,667 (+)EnsemblpanPan2panpan1.1
TMCO3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12260,785,287 - 60,832,940 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2260,786,583 - 60,904,895 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2260,496,656 - 60,544,102 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02261,470,165 - 61,517,664 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2261,470,068 - 61,517,656 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12260,908,951 - 60,956,412 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02260,910,924 - 60,958,406 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02260,942,095 - 60,989,556 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc9d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945195,666,287 - 195,703,547 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936472248,979 - 280,977 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936472248,518 - 285,724 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMCO3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,709,062 - 78,743,063 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11178,709,010 - 78,753,431 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,442,565 - 86,476,526 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC9D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1391,465,606 - 91,521,196 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl391,469,996 - 91,521,389 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604648,531,950 - 48,611,097 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc9d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624793520,036 - 565,601 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624793518,153 - 565,608 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc9d1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11370,382,240 - 70,419,380 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc9d1
304 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:72
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000026281
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat

Markers in Region
RH129860  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21676,217,313 - 76,217,497 (-)MAPPERmRatBN7.2
mRatBN7.21676,217,313 - 76,217,497 (+)MAPPERmRatBN7.2
Rnor_6.01681,549,302 - 81,549,485NCBIRnor6.0
Rnor_6.01681,071,794 - 81,071,977NCBIRnor6.0
Rnor_5.01681,037,394 - 81,037,577UniSTSRnor5.0
RGSC_v3.41681,072,815 - 81,072,998UniSTSRGSC3.4
Celera1674,024,129 - 74,024,312UniSTS
RH 3.4 Map16743.2UniSTS
Cytogenetic Map16q12.5UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 20 97 211 96 101 69 101 69 422 227 11 197 101 113 32 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001135857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000057761   ⟹   ENSRNOP00000054572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1680,908,340 - 81,071,969 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080832   ⟹   ENSRNOP00000073085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1680,904,125 - 81,072,145 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092470   ⟹   ENSRNOP00000075815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1682,919,377 - 82,956,245 (-)Ensembl
mRatBN7.2 Ensembl1676,217,201 - 76,254,107 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092501   ⟹   ENSRNOP00000075830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1676,217,340 - 76,249,985 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000164504   ⟹   ENSRNOP00000105364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1682,919,324 - 82,956,485 (-)Ensembl
RefSeq Acc Id: NM_001135857   ⟹   NP_001129329
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,324 - 82,956,485 (-)NCBI
mRatBN7.21676,217,146 - 76,254,309 (-)NCBI
Rnor_6.01681,035,001 - 81,072,145 (+)NCBI
Rnor_5.01681,037,226 - 81,075,420 (-)NCBI
RGSC_v3.41681,072,647 - 81,111,007 (-)RGD
Celera1674,023,961 - 74,060,922 (-)RGD
Sequence:
RefSeq Acc Id: NM_001415083   ⟹   NP_001402012
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,377 - 82,956,245 (-)NCBI
mRatBN7.21676,217,199 - 76,254,069 (-)NCBI
RefSeq Acc Id: XM_017600154   ⟹   XP_017455643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,195 (-)NCBI
mRatBN7.21676,217,199 - 76,254,018 (-)NCBI
Rnor_6.01681,035,343 - 81,072,092 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600159   ⟹   XP_017455648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,195 (-)NCBI
mRatBN7.21676,217,199 - 76,254,018 (-)NCBI
Rnor_6.01681,035,343 - 81,072,092 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094592   ⟹   XP_038950520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,194 (-)NCBI
mRatBN7.21676,217,286 - 76,254,057 (-)NCBI
RefSeq Acc Id: XM_039094593   ⟹   XP_038950521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,931,270 - 82,956,195 (-)NCBI
mRatBN7.21676,229,093 - 76,254,018 (-)NCBI
RefSeq Acc Id: XM_039094594   ⟹   XP_038950522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,931,260 - 82,956,195 (-)NCBI
mRatBN7.21676,229,085 - 76,254,018 (-)NCBI
RefSeq Acc Id: XM_063275466   ⟹   XP_063131536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,193 (-)NCBI
RefSeq Acc Id: XM_063275467   ⟹   XP_063131537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,195 (-)NCBI
RefSeq Acc Id: XM_063275468   ⟹   XP_063131538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,151 (-)NCBI
RefSeq Acc Id: XM_063275469   ⟹   XP_063131539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,193 (-)NCBI
RefSeq Acc Id: XM_063275470   ⟹   XP_063131540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,149 (-)NCBI
RefSeq Acc Id: XM_063275471   ⟹   XP_063131541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,151 (-)NCBI
RefSeq Acc Id: XM_063275472   ⟹   XP_063131542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,093 (-)NCBI
RefSeq Acc Id: XM_063275473   ⟹   XP_063131543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,193 (-)NCBI
RefSeq Acc Id: XM_063275474   ⟹   XP_063131544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,194 (-)NCBI
RefSeq Acc Id: XM_063275475   ⟹   XP_063131545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,919,463 - 82,956,149 (-)NCBI
RefSeq Acc Id: XR_005494625
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,921,941 - 82,956,195 (-)NCBI
mRatBN7.21676,219,763 - 76,254,018 (-)NCBI
RefSeq Acc Id: XR_005494626
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,926,069 - 82,956,195 (-)NCBI
mRatBN7.21676,223,886 - 76,254,018 (-)NCBI
RefSeq Acc Id: XR_005494627
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,921,941 - 82,956,195 (-)NCBI
mRatBN7.21676,219,763 - 76,254,018 (-)NCBI
RefSeq Acc Id: XR_005494628
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,929,684 - 82,956,195 (-)NCBI
mRatBN7.21676,227,493 - 76,254,018 (-)NCBI
RefSeq Acc Id: XR_005494629
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,926,259 - 82,956,195 (-)NCBI
mRatBN7.21676,224,073 - 76,254,018 (-)NCBI
RefSeq Acc Id: XR_005494630
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,929,684 - 82,956,195 (-)NCBI
mRatBN7.21676,227,493 - 76,254,018 (-)NCBI
RefSeq Acc Id: NP_001129329   ⟸   NM_001135857
- Peptide Label: isoform 1 precursor
- UniProtKB: A6IWH9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017455643   ⟸   XM_017600154
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017455648   ⟸   XM_017600159
- Peptide Label: isoform X3
- UniProtKB: A6IWH9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000054572   ⟸   ENSRNOT00000057761
Ensembl Acc Id: ENSRNOP00000073085   ⟸   ENSRNOT00000080832
RefSeq Acc Id: XP_038950520   ⟸   XM_039094592
- Peptide Label: isoform X3
- UniProtKB: A6IWH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950522   ⟸   XM_039094594
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038950521   ⟸   XM_039094593
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000075815   ⟸   ENSRNOT00000092470
Ensembl Acc Id: ENSRNOP00000075830   ⟸   ENSRNOT00000092501
RefSeq Acc Id: NP_001402012   ⟸   NM_001415083
- Peptide Label: isoform 2 precursor
- UniProtKB: D4A9M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131537   ⟸   XM_063275467
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063131544   ⟸   XM_063275474
- Peptide Label: isoform X4
- UniProtKB: D4A9M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131543   ⟸   XM_063275473
- Peptide Label: isoform X4
- UniProtKB: D4A9M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131539   ⟸   XM_063275469
- Peptide Label: isoform X3
- UniProtKB: A6IWH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131536   ⟸   XM_063275466
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063131541   ⟸   XM_063275471
- Peptide Label: isoform X4
- UniProtKB: D4A9M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131538   ⟸   XM_063275468
- Peptide Label: isoform X3
- UniProtKB: A6IWH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131545   ⟸   XM_063275475
- Peptide Label: isoform X4
- UniProtKB: D4A9M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131540   ⟸   XM_063275470
- Peptide Label: isoform X3
- UniProtKB: A6IWH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131542   ⟸   XM_063275472
- Peptide Label: isoform X4
- UniProtKB: D4A9M9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105364   ⟸   ENSRNOT00000164504
Protein Domains
Cation/H+ exchanger transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3Z8-F1-model_v2 AlphaFold D4A3Z8 1-678 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306586 AgrOrtholog
BioCyc Gene G2FUF-10717 BioCyc
Ensembl Genes ENSRNOG00000019346 Ensembl
  ENSRNOG00000046973 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000092470 ENTREZGENE
  ENSRNOT00000092470.3 UniProtKB/TrEMBL
  ENSRNOT00000164504 ENTREZGENE
  ENSRNOT00000164504.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1530.20 UniProtKB/TrEMBL
InterPro Cation/H_exchanger UniProtKB/TrEMBL
  KEA4/5/6-like UniProtKB/TrEMBL
  Na+/solute_symporter_sf UniProtKB/TrEMBL
NCBI Gene 306607 ENTREZGENE
PANTHER PTHR16254 UniProtKB/TrEMBL
  TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam Na_H_Exchanger UniProtKB/TrEMBL
PhenoGen Slc9d1 PhenoGen
RatGTEx ENSRNOG00000019346 RatGTEx
  ENSRNOG00000046973 RatGTEx
UniProt A0ABK0LT19_RAT UniProtKB/TrEMBL
  A6IWH9 ENTREZGENE, UniProtKB/TrEMBL
  D4A9M9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-11-13 Slc9d1  solute carrier family 9 member D1  Tmco3  transmembrane and coiled-coil domains 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-03-09 Tmco3  transmembrane and coiled-coil domains 3  LOC103690105  transmembrane and coiled-coil domain-containing protein 3-like  Data merged from RGD:9083991 737654 PROVISIONAL
2014-08-25 LOC103690105  transmembrane and coiled-coil domain-containing protein 3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Tmco3  transmembrane and coiled-coil domains 3   Tmco3_predicted  transmembrane and coiled-coil domains 3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Tmco3_predicted  transmembrane and coiled-coil domains 3 (predicted)  RGD1306586_predicted  similar to RIKEN cDNA B230339H12 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1306586_predicted  similar to RIKEN cDNA B230339H12 (predicted)  LOC306607_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC306607_predicted  similar to RIKEN cDNA B230339H12 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL