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Gene: Ntmt1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1) Rattus norvegicus

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Symbol:

Ntmt1

Name:

N-terminal Xaa-Pro-Lys N-methyltransferase 1

RGD ID:

1306582

Description:

Predicted to enable N-terminal protein N-methyltransferase activity and histone methyltransferase activity. Predicted to be involved in N-terminal protein amino acid methylation; chromosome segregation; and spindle organization. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human NTMT1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

alpha N-terminal protein methyltransferase 1A; LOC362103; methyltransferase like 11A; methyltransferase-like protein 11A; Mettl11a; MGC109213; NTM1A; RGD1306582; similar to RIKEN cDNA 2610205E22; X-Pro-Lys N-terminal protein methyltransferase 1A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NTMT1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ntmt1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ntmt1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NTMT1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NTMT1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ntmt1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NTMT1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NTMT1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ntmt1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ntmt1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ntmt1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	NTMT1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ntmt1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	homt-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	homt-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ntmt	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TAE1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TAE1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ntmt1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	LOC116407067	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	34,490,972 - 34,508,316 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	34,484,388 - 34,508,417 (+)	Ensembl				GRCr8
mRatBN7.2	3	14,093,374 - 14,110,565 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	14,093,977 - 14,110,663 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	17,166,347 - 17,182,937 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	25,751,337 - 25,767,927 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	23,998,688 - 24,015,284 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	9,642,748 - 9,659,633 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	9,643,047 - 9,659,630 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	15,001,767 - 15,019,007 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	9,860,524 - 9,877,109 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	8,854,298 - 8,870,883 (+)	NCBI		Celera
RGSC_v3.1	3	9,755,909 - 9,769,836 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

DDE (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

doxorubicin (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

ivermectin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (EXP)

mono(2-ethylhexyl) phthalate (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phorone (EXP)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA)

chromosome segregation (IEA,ISO,ISS)

methylation (IEA)

N-terminal peptidyl-alanine trimethylation (ISO)

N-terminal peptidyl-glycine methylation (ISO,ISS)

N-terminal peptidyl-proline dimethylation (ISO,ISS)

N-terminal peptidyl-serine dimethylation (ISO,ISS)

N-terminal peptidyl-serine trimethylation (ISO,ISS)

spindle organization (IBA,IEA,ISO,ISS)

Cellular Component

cytoplasm (IBA)

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO,ISS)

Molecular Function

histone methyltransferase activity (IEA,ISO,ISS)

methyltransferase activity (IEA)

N-terminal protein N-methyltransferase activity (IBA,IEA,ISO,ISS)

protein binding (ISO)

protein methyltransferase activity (IEA,ISO,ISS)

transferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:20481588	PMID:20668449	PMID:26543159

Genomics

Comparative Map Data

Ntmt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	34,490,972 - 34,508,316 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	34,484,388 - 34,508,417 (+)	Ensembl				GRCr8
mRatBN7.2	3	14,093,374 - 14,110,565 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	14,093,977 - 14,110,663 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	17,166,347 - 17,182,937 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	25,751,337 - 25,767,927 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	23,998,688 - 24,015,284 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	9,642,748 - 9,659,633 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	9,643,047 - 9,659,630 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	15,001,767 - 15,019,007 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	9,860,524 - 9,877,109 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	8,854,298 - 8,870,883 (+)	NCBI		Celera
RGSC_v3.1	3	9,755,909 - 9,769,836 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

NTMT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	129,608,872 - 129,636,135 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	129,606,704 - 129,636,744 (+)	Ensembl			hg38	GRCh38
GRCh37	9	132,371,151 - 132,398,414 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	131,428,256 - 131,437,700 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	9	103,039,246 - 103,048,694 (+)	NCBI		Celera
Cytogenetic Map	9	q34.11	NCBI
HuRef	9	101,987,502 - 101,996,950 (+)	NCBI		HuRef
CHM1_1	9	132,537,169 - 132,546,616 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	141,813,472 - 141,840,743 (+)	NCBI		T2T-CHM13v2.0

Ntmt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	30,697,576 - 30,713,045 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	30,697,838 - 30,713,045 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	30,807,945 - 30,823,033 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	30,807,826 - 30,823,033 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	30,663,497 - 30,678,534 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	30,629,986 - 30,645,023 (+)	NCBI		MGSCv36	mm8
Celera	2	30,512,087 - 30,527,181 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	21.74	NCBI

Ntmt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955570	1,744,716 - 1,747,813 (+)	Ensembl
ChiLan1.0	NW_004955570	1,730,407 - 1,747,813 (+)	NCBI	ChiLan1.0	ChiLan1.0

NTMT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	9,714,603 - 9,770,113 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	9,716,947 - 9,726,387 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	100,752,741 - 100,762,164 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	129,410,036 - 129,419,471 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	129,410,048 - 129,420,092 (+)	Ensembl			panPan2	panpan1.1

NTMT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	54,163,708 - 54,172,906 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	54,164,098 - 54,172,688 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	53,359,638 - 53,368,822 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	55,059,207 - 55,068,384 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	55,059,591 - 55,068,164 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	53,837,720 - 53,846,916 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	54,157,772 - 54,166,939 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	54,251,180 - 54,260,367 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ntmt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	197,119,217 - 197,127,196 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	16,888,096 - 16,900,277 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	16,887,769 - 16,895,721 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NTMT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	269,819,753 - 269,828,831 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	269,819,774 - 269,828,832 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	303,687,323 - 303,696,421 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NTMT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	8,509,770 - 8,519,726 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	8,509,905 - 8,519,894 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666079	6,918,992 - 6,928,915 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ntmt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	5,704,334 - 5,713,415 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	5,704,334 - 5,712,790 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ntmt1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	4,798,040 - 4,814,426 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ntmt1
160 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	194
Count of miRNA genes:	143
Interacting mature miRNAs:	159
Transcripts:	ENSRNOT00000035805
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

BI277553

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	14,110,343 - 14,110,494 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	9,659,423 - 9,659,573	NCBI	Rnor6.0
Rnor_5.0	3	15,018,786 - 15,018,936	UniSTS	Rnor5.0
RGSC_v3.4	3	9,876,899 - 9,877,049	UniSTS	RGSC3.4
Celera	3	8,870,673 - 8,870,823	UniSTS
RH 3.4 Map	3	49.6	UniSTS
Cytogenetic Map	3	p12	UniSTS

BF387456

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	34,505,631 - 34,505,814 (+)	Marker Load Pipeline
mRatBN7.2	3	14,107,870 - 14,108,052 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	9,656,950 - 9,657,131	NCBI	Rnor6.0
Rnor_5.0	3	15,016,313 - 15,016,494	UniSTS	Rnor5.0
RGSC_v3.4	3	9,874,426 - 9,874,607	UniSTS	RGSC3.4
Celera	3	8,868,200 - 8,868,381	UniSTS
RH 3.4 Map	3	47.3	UniSTS
Cytogenetic Map	3	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035805 ⟹ ENSRNOP00000035921

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	34,484,388 - 34,508,417 (+)	Ensembl
mRatBN7.2 Ensembl	3	14,093,977 - 14,110,653 (+)	Ensembl
Rnor_6.0 Ensembl	3	9,643,047 - 9,659,630 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111041 ⟹ ENSRNOP00000085096

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	34,491,692 - 34,508,313 (+)	Ensembl
mRatBN7.2 Ensembl	3	14,093,981 - 14,110,663 (+)	Ensembl

RefSeq Acc Id:

NM_001025019 ⟹ NP_001020190

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,491,731 - 34,508,316 (+)	NCBI
mRatBN7.2	3	14,093,969 - 14,110,554 (+)	NCBI
Rnor_6.0	3	9,643,047 - 9,659,633 (+)	NCBI
Rnor_5.0	3	15,001,767 - 15,019,007 (+)	NCBI
RGSC_v3.4	3	9,860,524 - 9,877,109 (+)	RGD
Celera	3	8,854,298 - 8,870,883 (+)	RGD

Sequence:

show sequence

GACAAAGGCAGAGGCCGCGAGGTGTCTGGTCCGGTAGAGTGGTGGCGGCAGCCGTGGGCTACGG
TCTTTGCCAGCCTCCTCCTCAACCCGTCCTTGTCTTTCGAGTCCCTGGAGCCACCACCTAGGGG
AGCAGAGCAGTGGCTGGTGACTGTGCAGCTGGTGACGTCATGACAAGCGAGGTGATCGAAGATG
AGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATTCCGCCCACGGTGGACGGCAT
GCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCCCGGAAGTTTCTGCAGAGG
TTTTTAAGGGAAGGCCCAAACAAGACGGGGACTTCCTGTGCCCTGGACTGTGGTGCTGGCATTG
GAAGGATCACCAAGCGCCTGCTCCTGCCGCTCTTCAGGGTGGTTGACATGGTCGACGTGACGGA
AGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGGGCAAGAGGGTGAGGAACTACTTC
TGCTGTGGGCTGCAGGACTTCAGCCCTGAGCCCAGCTCCTATGACGTGATCTGGATCCAGTGGG
TGATAGGCCACCTGACGGATCAGCACCTGGCTGAGTTTCTGCGCCGCTGCAGGCGGGGCCTGCG
CCCCAATGGCATCATTGTCATCAAAGACAACATGGCCCAGGAGGGTGTGATCCTGGACGATGTG
GACAGCAGTGTGTGCCGTGACCTCGAGGTGGTCCGCCGGATCATCCGCAGTGCAGGCCTCAGCC
TCCTGGCTGAGGAGCGCCAGGAGAACCTGCCAGATGAGATCTATCACGTCTACAGTTTCGCCCT
GAGATGAAACCGGGGCCAGAGCTGGGGGCCAGCAGCTGGCAGGCCAAGAGACACCTGCCACCCA
CCAATGACTCCAGTGGGAAGGGACAAGCCCCAGAGTAGGTGTGCCCTGGATTGGGGCAGTGCAG
CCCTGTCACTCCAAAGCACCCTGGCGACTCCCTGCAGGGCCTACGGGAAGCTGAGTTGTCCCCA
CTGGACCAGCCGCCTAAGGGGAAAGACTTCACTTGGTTGCCTAGGACCTGAAGTGTGTGGACTG
CTGTGTTCCAGGACAGCCAGGCAAGCCACACATGGTACCCGCCAGAAGGTACCACTTACGGGTA
TGGTCACAGCCCCAAATCCTCTTTGGTGATGGGTCATAGCAGCCTGTAGCTCCTCCCTGACAGG
CATGTGCAGTCAATAAAAGGGTGAGCCTTGTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006233919 ⟹ XP_006233981

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,490,972 - 34,508,316 (+)	NCBI
mRatBN7.2	3	14,093,880 - 14,110,565 (+)	NCBI
Rnor_6.0	3	9,642,979 - 9,659,633 (+)	NCBI
Rnor_5.0	3	15,001,767 - 15,019,007 (+)	NCBI

Sequence:

show sequence

TGAACTGGCCTTGGGGCGGAGCGAGCTTGAGTCCGGCCCCTACCAGGCTCAGGGAAGTGACGTG
TGCGGACAAAGGCAGAGGCCGCGAGGTGTCTGGTCCGGTAGAGTGGTGGCGGCAGCCGTGGGCT
ACGGTCTTTGCCAGCCTCCTCCTCAACCCGTCCTTGTCTTTCGAGTCCCTGGAGCCACCACCTA
GGATTCGGAATTCCCCTGTTCTCTAGGATTAACCCCTTTTGAAGCTGTGCGCACTAGGACCCCA
TCTCTGCTGCCCGATATAAAAGCAGAAGTCGTTGCTGAATTTGATGAAAAGTTTCTTTCCTCCC
TACAAGCCTCATTCCAGGTACAGTAATCATCAAAAGGCACCAAAAGGAGACATCGGAGCCTGGC
TGGAAGGGACCATAGACTTTAATCCTGACCACATCAAGAACAGTCAAGGTCGACGAGGTCCCGG
CCTGGATACACCATTCCTGGTTTTACCCATGTAAAACCTGTTGACCCACAGGCAGGCCCAGGCC
ACTACACACCCGAGGCCTGCACTGGACTATGGCGAGCTGCCACCCACCCACTAGACCCACTTAA
GCTAAGAATTCAAAAACCCGCCTCACGAACCCTGCTGCTCGCCCTAAACAATGGCACACCTCGA
CTGGTCTCCAGAGGGCTCCATCTTCACACTGCTCTGCTTGGAGATCAGACTTCAGCAGACAAAC
CTTTAACAAGCTGTTACCACCAAATGGATACTTCCAGGCCCCGAGAGAACCCCAGGAGACTTAG
AGGTGCAGACTTTGACATTGACTGGTTCCGGCAATACCACCTTTCCCATGTTTAACCTAGGCCT
TTGCGCCCTGGCCGGATATGTATGGAAAGATCCGGGTTCAAGCTGTTTGTCATATCAGGAACTG
CAGAGCGCTAGGCCAACTTGTGGGCAGGACTGCCAAGAACAGCGACTTGCAGCCATCCAGCTCT
GTGGGACTTGCCGAGGGGAGCAGAGCAGTGGCTGGTGACTGTGCAGCTGGTGACGTCATGACAA
GCGAGGTGATCGAAGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATTCC
GCCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACAGCTCC
CGGAAGTTTCTGCAGAGGTTTTTAAGGGAAGGCCCAAACAAGACGGGGACTTCCTGTGCCCTGG
ACTGTGGTGCTGGCATTGGAAGGATCACCAAGCGCCTGCTCCTGCCGCTCTTCAGGGTGGTTGA
CATGGTCGACGTGACGGAAGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGGGCAAG
AGGGTGAGGAACTACTTCTGCTGTGGGCTGCAGGACTTCAGCCCTGAGCCCAGCTCCTATGACG
TGATCTGGATCCAGTGGGTGATAGGCCACCTGACGGATCAGCACCTGGCTGAGTTTCTGCGCCG
CTGCAGGCGGGGCCTGCGCCCCAATGGCATCATTGTCATCAAAGACAACATGGCCCAGGAGGGT
GTGATCCTGGACGATGTGGACAGCAGTGTGTGCCGTGACCTCGAGGTGGTCCGCCGGATCATCC
GCAGTGCAGGCCTCAGCCTCCTGGCTGAGGAGCGCCAGGAGAACCTGCCAGATGAGATCTATCA
CGTCTACAGTTTCGCCCTGAGATGAAACCGGGGCCAGAGCTGGGGGCCAGCAGCTGGCAGGCCA
AGAGACACCTGCCACCCACCAATGACTCCAGTGGGAAGGGACAAGCCCCAGAGTAGGTGTGCCC
TGGATTGGGGCAGTGCAGCCCTGTCACTCCAAAGCACCCTGGCGACTCCCTGCAGGGCCTACGG
GAAGCTGAGTTGTCCCCACTGGACCAGCCGCCTAAGGGGAAAGACTTCACTTGGTTGCCTAGGA
CCTGAAGTGTGTGGACTGCTGTGTTCCAGGACAGCCAGGCAAGCCACACATGGTACCCGCCAGA
AGGTACCACTTACGGGTATGGTCACAGCCCCAAATCCTCTTTGGTGATGGGTCATAGCAGCCTG
TAGCTCCTCCCTGACAGGCATGTGCAGTCAATAAAAGGGTGAGCCTTGTTCTCAAA

hide sequence

RefSeq Acc Id:

XM_008761670 ⟹ XP_008759892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,491,401 - 34,508,316 (+)	NCBI
mRatBN7.2	3	14,093,628 - 14,110,565 (+)	NCBI
Rnor_6.0	3	9,642,748 - 9,659,633 (+)	NCBI

Sequence:

show sequence

AGAAGATCTGGAGGTGCCGGGGGAGCAGAGCAGTGGCTGGTGACTGTGCAGCTGGTGACGTCAT
GACAAGCGAGGTGATCGAAGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAG
ATTCCGCCCACGGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAACATCGACCTCAACA
GCTCCCGGAAGTTTCTGCAGAGGTTTTTAAGGGAAGGCCCAAACAAGACGGGGACTTCCTGTGC
CCTGGACTGTGGTGCTGGCATTGGAAGGATCACCAAGCGCCTGCTCCTGCCGCTCTTCAGGGTG
GTTGACATGGTCGACGTGACGGAAGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGG
GCAAGAGGGTGAGGAACTACTTCTGCTGTGGGCTGCAGGACTTCAGCCCTGAGCCCAGCTCCTA
TGACGTGATCTGGATCCAGTGGGTGATAGGCCACCTGACGGATCAGCACCTGGCTGAGTTTCTG
CGCCGCTGCAGGCGGGGCCTGCGCCCCAATGGCATCATTGTCATCAAAGACAACATGGCCCAGG
AGGGTGTGATCCTGGACGATGTGGACAGCAGTGTGTGCCGTGACCTCGAGGTGGTCCGCCGGAT
CATCCGCAGTGCAGGCCTCAGCCTCCTGGCTGAGGAGCGCCAGGAGAACCTGCCAGATGAGATC
TATCACGTCTACAGTTTCGCCCTGAGATGAAACCGGGGCCAGAGCTGGGGGCCAGCAGCTGGCA
GGCCAAGAGACACCTGCCACCCACCAATGACTCCAGTGGGAAGGGACAAGCCCCAGAGTAGGTG
TGCCCTGGATTGGGGCAGTGCAGCCCTGTCACTCCAAAGCACCCTGGCGACTCCCTGCAGGGCC
TACGGGAAGCTGAGTTGTCCCCACTGGACCAGCCGCCTAAGGGGAAAGACTTCACTTGGTTGCC
TAGGACCTGAAGTGTGTGGACTGCTGTGTTCCAGGACAGCCAGGCAAGCCACACATGGTACCCG
CCAGAAGGTACCACTTACGGGTATGGTCACAGCCCCAAATCCTCTTTGGTGATGGGTCATAGCA
GCCTGTAGCTCCTCCCTGACAGGCATGTGCAGTCAATAAAAGGGTGAGCCTTGTTCTCAAA

hide sequence

RefSeq Acc Id:

XM_017591880 ⟹ XP_017447369

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,504,519 - 34,508,316 (+)	NCBI
mRatBN7.2	3	14,093,859 - 14,110,565 (+)	NCBI
Rnor_6.0	3	9,655,893 - 9,659,633 (+)	NCBI

Sequence:

show sequence

ATCGAAGATGAGAAACAGTTTTATTCGAAGGCCAAGACCTACTGGAAGCAGATTCCGCCCACGG
TGGACGGCATGCTCGGGGGGAAGGCCCAAACAAGACGGGGACTTCCTGTGCCCTGGACTGTGGT
GCTGGCATTGGAAGGATCACCAAGCGCCTGCTCCTGCCGCTCTTCAGGGTGGTTGACATGGTCG
ACGTGACGGAAGACTTTCTGGCCAAAGCCAAGACCTACCTGGGGGAAGAGGGCAAGAGGGTGAG
GAACTACTTCTGCTGTGGGCTGCAGGACTTCAGCCCTGAGCCCAGCTCCTATGACGTGATCTGG
ATCCAGTGGGTGATAGGCCACCTGACGGATCAGCACCTGGCTGAGTTTCTGCGCCGCTGCAGGC
GGGGCCTGCGCCCCAATGGCATCATTGTCATCAAAGACAACATGGCCCAGGAGGGTGTGATCCT
GGACGATGTGGACAGCAGTGTGTGCCGTGACCTCGAGGTGGTCCGCCGGATCATCCGCAGTGCA
GGCCTCAGCCTCCTGGCTGAGGAGCGCCAGGAGAACCTGCCAGATGAGATCTATCACGTCTACA
GTTTCGCCCTGAGATGAAACCGGGGCCAGAGCTGGGGGCCAGCAGCTGGCAGGCCAAGAGACAC
CTGCCACCCACCAATGACTCCAGTGGGAAGGGACAAGCCCCAGAGTAGGTGTGCCCTGGATTGG
GGCAGTGCAGCCCTGTCACTCCAAAGCACCCTGGCGACTCCCTGCAGGGCCTACGGGAAGCTGA
GTTGTCCCCACTGGACCAGCCGCCTAAGGGGAAAGACTTCACTTGGTTGCCTAGGACCTGAAGT
GTGTGGACTGCTGTGTTCCAGGACAGCCAGGCAAGCCACACATGGTACCCGCCAGAAGGTACCA
CTTACGGGTATGGTCACAGCCCCAAATCCTCTTTGGTGATGGGTCATAGCAGCCTGTAGCTCCT
CCCTGACAGGCATGTGCAGTCAATAAAAGGGTGAGCCTTGTTCTCAAA

hide sequence

RefSeq Acc Id:

XM_039105370 ⟹ XP_038961298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,491,209 - 34,508,316 (+)	NCBI
mRatBN7.2	3	14,093,452 - 14,110,565 (+)	NCBI

RefSeq Acc Id:

XM_039105371 ⟹ XP_038961299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,491,087 - 34,508,316 (+)	NCBI
mRatBN7.2	3	14,093,374 - 14,110,565 (+)	NCBI

RefSeq Acc Id:

XM_039105372 ⟹ XP_038961300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,490,972 - 34,505,824 (+)	NCBI
mRatBN7.2	3	14,093,853 - 14,108,062 (+)	NCBI

RefSeq Acc Id:

XM_039105373 ⟹ XP_038961301

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	34,504,583 - 34,508,316 (+)	NCBI
mRatBN7.2	3	14,106,821 - 14,110,565 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020190	(Get FASTA)	NCBI Sequence Viewer
	XP_006233981	(Get FASTA)	NCBI Sequence Viewer
	XP_008759892	(Get FASTA)	NCBI Sequence Viewer
	XP_017447369	(Get FASTA)	NCBI Sequence Viewer
	XP_038961298	(Get FASTA)	NCBI Sequence Viewer
	XP_038961299	(Get FASTA)	NCBI Sequence Viewer
	XP_038961300	(Get FASTA)	NCBI Sequence Viewer
	XP_038961301	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91294	(Get FASTA)	NCBI Sequence Viewer
	EDL93293	(Get FASTA)	NCBI Sequence Viewer
	EDL93294	(Get FASTA)	NCBI Sequence Viewer
	EDL93295	(Get FASTA)	NCBI Sequence Viewer
	EDL93296	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035921
	ENSRNOP00000035921.4
	ENSRNOP00000085096
GenBank Protein	Q5BJX0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020190 ⟸ NM_001025019

- UniProtKB:

Q5BJX0 (UniProtKB/Swiss-Prot), A6JU01 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREGPNKTGTSC
ALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGKRVRNYFCCGLQDFSPEPSS
YDVIWIQWVIGHLTDQHLAEFLRRCRRGLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLEVVRR
IIRSAGLSLLAEERQENLPDEIYHVYSFALR

hide sequence

RefSeq Acc Id:	XP_006233981 ⟸ XM_006233919
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZZE9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYGKIRVQAVCHIRNCRALGQLVGRTAKNSDLQPSSSVGLAEGSRAVAGDCAAGDVMTSEVIED EKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREGPNKTGTSCALDCGAGI GRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGKRVRNYFCCGLQDFSPEPSSYDVIWIQW VIGHLTDQHLAEFLRRCRRGLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLEVVRRIIRSAGLS LLAEERQENLPDEIYHVYSFALR hide sequence

RefSeq Acc Id:	XP_008759892 ⟸ XM_008761670
- Peptide Label:	isoform X2
- UniProtKB:	Q5BJX0 (UniProtKB/Swiss-Prot), A6JU01 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREGPNKTGTSC ALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGKRVRNYFCCGLQDFSPEPSS YDVIWIQWVIGHLTDQHLAEFLRRCRRGLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLEVVRR IIRSAGLSLLAEERQENLPDEIYHVYSFALR hide sequence

RefSeq Acc Id:	XP_017447369 ⟸ XM_017591880
- Peptide Label:	isoform X4
- UniProtKB:	A6JU03 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVDVTEDFLAKAKTYLGEEGKRVRNYFCCGLQDFSPEPSSYDVIWIQWVIGHLTDQHLAEFLRR CRRGLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLEVVRRIIRSAGLSLLAEERQENLPDEIYH VYSFALR hide sequence

Ensembl Acc Id:

ENSRNOP00000035921 ⟸ ENSRNOT00000035805

RefSeq Acc Id:	XP_038961299 ⟸ XM_039105371
- Peptide Label:	isoform X2
- UniProtKB:	Q5BJX0 (UniProtKB/Swiss-Prot), A6JU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961298 ⟸ XM_039105370
- Peptide Label:	isoform X2
- UniProtKB:	Q5BJX0 (UniProtKB/Swiss-Prot), A6JU01 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961300 ⟸ XM_039105372
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038961301 ⟸ XM_039105373
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000085096 ⟸ ENSRNOT00000111041

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5BJX0-F1-model_v2	AlphaFold	Q5BJX0	1-223	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691965

Promoter ID:

EPDNEW_R2490

Type:

initiation region

Name:

Ntmt1_1

Description:

N-terminal Xaa-Pro-Lys N-methyltransferase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	9,643,082 - 9,643,142	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306582	AgrOrtholog
BioCyc Gene	G2FUF-50195	BioCyc
Ensembl Genes	ENSRNOG00000024809	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000035805	ENTREZGENE
	ENSRNOT00000035805.7	UniProtKB/Swiss-Prot
	ENSRNOT00000111041	ENTREZGENE
Gene3D-CATH	3.40.50.150	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7307721	IMAGE-MGC_LOAD
InterPro	MeTrfase_NTM1	UniProtKB/Swiss-Prot
	SAM-dependent_MTases	UniProtKB/Swiss-Prot
KEGG Report	rno:362103	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109213	IMAGE-MGC_LOAD
NCBI Gene	362103	ENTREZGENE
PANTHER	N-TERMINAL XAA-PRO-LYS N-METHYLTRANSFERASE 1	UniProtKB/Swiss-Prot
	PTHR12753	UniProtKB/Swiss-Prot
Pfam	Methyltransf_PK	UniProtKB/Swiss-Prot
PhenoGen	Ntmt1	PhenoGen
PIRSF	DUF858_MeTrfase_lik	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000024809	RatGTEx
Superfamily-SCOP	SSF53335	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZZE9	ENTREZGENE, UniProtKB/TrEMBL
	A6JU01	ENTREZGENE, UniProtKB/TrEMBL
	A6JU03	ENTREZGENE, UniProtKB/TrEMBL
	NTM1A_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-05	Ntmt1	N-terminal Xaa-Pro-Lys N-methyltransferase 1	Mettl11a	methyltransferase like 11A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-09	Mettl11a	methyltransferase like 11A	RGD1306582	similar to RIKEN cDNA 2610205E22	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306582	similar to RIKEN cDNA 2610205E22	RGD1306582_predicted	similar to RIKEN cDNA 2610205E22 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306582_predicted	similar to RIKEN cDNA 2610205E22 (predicted)	LOC362103_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362103_predicted	similar to RIKEN cDNA 2610205E22 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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