Mrps9 (mitochondrial ribosomal protein S9) - Rat Genome Database

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Gene: Mrps9 (mitochondrial ribosomal protein S9) Rattus norvegicus
Analyze
Symbol: Mrps9
Name: mitochondrial ribosomal protein S9
RGD ID: 1306558
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in mitochondrial inner membrane; nucleolus; and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS9 (mitochondrial ribosomal protein S9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 28S ribosomal protein S9, mitochondrial; small ribosomal subunit protein uS9m
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8952,605,678 - 52,664,499 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl952,605,678 - 52,664,499 (+)EnsemblGRCr8
mRatBN7.2945,113,554 - 45,172,375 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,113,554 - 45,172,375 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx953,609,944 - 53,668,782 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0958,732,742 - 58,791,582 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0957,011,402 - 57,070,223 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0949,647,257 - 49,704,828 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl949,647,257 - 49,704,828 (+)Ensemblrn6Rnor6.0
Rnor_5.0949,317,820 - 49,375,391 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4942,043,450 - 42,102,684 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera942,831,629 - 42,890,556 (+)NCBICelera
RGSC_v3.1942,044,863 - 42,104,091 (+)NCBI
Cytogenetic Map9q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18614015   PMID:22681889  


Genomics

Comparative Map Data
Mrps9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8952,605,678 - 52,664,499 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl952,605,678 - 52,664,499 (+)EnsemblGRCr8
mRatBN7.2945,113,554 - 45,172,375 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,113,554 - 45,172,375 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx953,609,944 - 53,668,782 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0958,732,742 - 58,791,582 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0957,011,402 - 57,070,223 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0949,647,257 - 49,704,828 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl949,647,257 - 49,704,828 (+)Ensemblrn6Rnor6.0
Rnor_5.0949,317,820 - 49,375,391 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4942,043,450 - 42,102,684 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera942,831,629 - 42,890,556 (+)NCBICelera
RGSC_v3.1942,044,863 - 42,104,091 (+)NCBI
Cytogenetic Map9q22NCBI
MRPS9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382105,038,069 - 105,099,960 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2105,038,025 - 105,099,960 (+)Ensemblhg38GRCh38
GRCh372105,654,527 - 105,716,418 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362105,020,938 - 105,082,850 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342105,113,023 - 105,174,935NCBI
Celera299,857,577 - 99,919,512 (+)NCBICelera
Cytogenetic Map2q12.1NCBI
HuRef299,424,216 - 99,487,359 (+)NCBIHuRef
CHM1_12105,659,619 - 105,720,891 (+)NCBICHM1_1
T2T-CHM13v2.02105,499,329 - 105,561,123 (+)NCBIT2T-CHM13v2.0
Mrps9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39142,890,393 - 42,944,843 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl142,890,393 - 42,944,843 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38142,851,233 - 42,905,683 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl142,851,233 - 42,905,683 (+)Ensemblmm10GRCm38
MGSCv37142,908,078 - 42,962,528 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36142,795,829 - 42,850,226 (+)NCBIMGSCv36mm8
Celera143,190,035 - 43,244,491 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map121.62NCBI
Mrps9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547010,033,028 - 10,087,361 (+)Ensembl
ChiLan1.0NW_00495547010,033,685 - 10,166,113 (+)NCBIChiLan1.0ChiLan1.0
MRPS9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21222,613,301 - 22,677,437 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A22,616,066 - 22,677,076 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A96,725,292 - 96,786,113 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A106,129,381 - 106,190,167 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A106,129,381 - 106,194,057 (+)EnsemblpanPan2panpan1.1
MRPS9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11038,307,233 - 38,369,987 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1038,307,235 - 38,369,885 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1038,232,442 - 38,295,726 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01039,163,383 - 39,226,852 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1039,162,432 - 39,226,264 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11038,887,389 - 38,950,528 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01039,166,715 - 39,230,140 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01039,358,527 - 39,421,975 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mrps9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629287,479,252 - 87,536,218 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936764902,316 - 959,120 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936764902,156 - 959,154 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl349,625,248 - 49,681,440 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1349,626,796 - 49,681,437 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2352,083,605 - 52,092,083 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2351,870,434 - 51,891,406 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1148,694,469 - 8,749,754 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl148,694,520 - 8,750,792 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041176,412,092 - 176,467,884 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrps9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247499,220,950 - 9,275,953 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247499,220,880 - 9,275,836 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mrps9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14119,010,566 - 119,062,683 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mrps9
380 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:91
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000021899
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat

Markers in Region
BI274476  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2945,166,189 - 45,166,303 (+)MAPPERmRatBN7.2
Rnor_6.0949,698,643 - 49,698,756NCBIRnor6.0
Rnor_5.0949,369,206 - 49,369,319UniSTSRnor5.0
RGSC_v3.4942,096,499 - 42,096,612UniSTSRGSC3.4
Celera942,884,371 - 42,884,484UniSTS
RH 3.4 Map9399.0UniSTS
Cytogenetic Map9q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021899   ⟹   ENSRNOP00000021899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl952,605,678 - 52,664,499 (+)Ensembl
mRatBN7.2 Ensembl945,113,554 - 45,172,375 (+)Ensembl
Rnor_6.0 Ensembl949,647,257 - 49,704,828 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094384   ⟹   ENSRNOP00000081112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl952,605,678 - 52,663,209 (+)Ensembl
mRatBN7.2 Ensembl945,113,554 - 45,172,375 (+)Ensembl
RefSeq Acc Id: NM_001100549   ⟹   NP_001094019
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8952,605,678 - 52,664,499 (+)NCBI
mRatBN7.2945,113,554 - 45,172,375 (+)NCBI
Rnor_6.0949,647,257 - 49,704,828 (+)NCBI
Rnor_5.0949,317,820 - 49,375,391 (+)NCBI
RGSC_v3.4942,043,450 - 42,102,684 (+)RGD
Celera942,831,629 - 42,890,556 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001094019 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88242 (Get FASTA)   NCBI Sequence Viewer  
  AAI58705 (Get FASTA)   NCBI Sequence Viewer  
  EDL99153 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021899
  ENSRNOP00000021899.5
  ENSRNOP00000081112.2
RefSeq Acc Id: NP_001094019   ⟸   NM_001100549
- UniProtKB: B0BN68 (UniProtKB/TrEMBL),   A6INQ7 (UniProtKB/TrEMBL),   A0A8I5ZRA7 (UniProtKB/TrEMBL),   F7FN10 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021899   ⟸   ENSRNOT00000021899
Ensembl Acc Id: ENSRNOP00000081112   ⟸   ENSRNOT00000094384

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BN68-F1-model_v2 AlphaFold B0BN68 1-390 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696637
Promoter ID:EPDNEW_R7162
Type:multiple initiation site
Name:Mrps9_1
Description:mitochondrial ribosomal protein S9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0949,647,274 - 49,647,334EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306558 AgrOrtholog
BioCyc Gene G2FUF-27679 BioCyc
Ensembl Genes ENSRNOG00000016201 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021899 ENTREZGENE
  ENSRNOT00000021899.7 UniProtKB/TrEMBL
  ENSRNOT00000094384.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.230.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7366193 IMAGE-MGC_LOAD
  IMAGE:9030006 IMAGE-MGC_LOAD
InterPro Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
  Ribosomal_S9 UniProtKB/TrEMBL
  Ribosomal_S9_CS UniProtKB/TrEMBL
  Ribosomal_uS9_bac/plastid UniProtKB/TrEMBL
KEGG Report rno:301371 UniProtKB/TrEMBL
MGC_CLONE MGC:109027 IMAGE-MGC_LOAD
  MGC:187794 IMAGE-MGC_LOAD
NCBI Gene 301371 ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL UniProtKB/TrEMBL
  Ribosomal_S9 UniProtKB/TrEMBL
Pfam Ribosomal_S9 UniProtKB/TrEMBL
PhenoGen Mrps9 PhenoGen
PROSITE RIBOSOMAL_S9 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016201 RatGTEx
Superfamily-SCOP Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
UniProt A0A8I5ZRA7 ENTREZGENE, UniProtKB/TrEMBL
  A6INQ7 ENTREZGENE, UniProtKB/TrEMBL
  B0BN68 ENTREZGENE
  F7FN10 ENTREZGENE, UniProtKB/TrEMBL
  Q5I0K4_RAT UniProtKB/TrEMBL
UniProt Secondary B0BN68 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Mrps9  mitochondrial ribosomal protein S9  Mrps9_predicted  mitochondrial ribosomal protein S9 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Mrps9_predicted  mitochondrial ribosomal protein S9 (predicted)      Symbol and Name status set to approved 70820 APPROVED