Myef2 (myelin expression factor 2) - Rat Genome Database

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Gene: Myef2 (myelin expression factor 2) Rattus norvegicus
Analyze
Symbol: Myef2
Name: myelin expression factor 2
RGD ID: 1306547
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and mRNA binding activity. Predicted to be involved in myotube differentiation; negative regulation of transcription by RNA polymerase II; and neuron differentiation. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human MYEF2 (myelin expression factor 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362207; MGC109392; myelin basic protein expression factor 2, repressor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83132,791,694 - 132,827,572 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3132,791,694 - 132,827,523 (-)EnsemblGRCr8
mRatBN7.23112,338,241 - 112,374,122 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3112,338,241 - 112,374,181 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3116,198,812 - 116,234,649 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03124,794,341 - 124,830,177 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03122,454,704 - 122,490,535 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd3130,843,434 - 130,879,269 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive3137,759,876 - 137,795,709 (-)NCBILyon_Normotensive
Lyon_Hypertensive3129,639,696 - 129,675,529 (-)NCBILyon_Hypertensive
F344_StmMcwi3110,944,224 - 110,980,059 (-)NCBIF344_StmMcwi
Rnor_6.03117,353,490 - 117,389,582 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3117,354,382 - 117,389,561 (-)Ensemblrn6Rnor6.0
Rnor_5.03123,877,348 - 123,913,393 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43112,386,454 - 112,422,182 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3111,196,494 - 111,225,673 (-)NCBICelera
RGSC_v3.13112,292,700 - 112,346,816 (-)NCBI
Cytogenetic Map3q36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
3',5'-cyclic UMP  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP)
amiodarone  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP,ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clotrimazole  (EXP)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
diazinon  (EXP)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
fenvalerate  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
indole-3-methanol  (EXP)
ivermectin  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
nickel atom  (ISO)
paracetamol  (ISO)
perfluorohexanesulfonic acid  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
nucleus  (IBA,IEA,ISO)
ribonucleoprotein complex  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7539003   PMID:8455629   PMID:12477932   PMID:22082260   PMID:22681889   PMID:25002582   PMID:30361391  


Genomics

Comparative Map Data
Myef2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83132,791,694 - 132,827,572 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3132,791,694 - 132,827,523 (-)EnsemblGRCr8
mRatBN7.23112,338,241 - 112,374,122 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3112,338,241 - 112,374,181 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3116,198,812 - 116,234,649 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03124,794,341 - 124,830,177 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03122,454,704 - 122,490,535 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd3130,843,434 - 130,879,269 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive3137,759,876 - 137,795,709 (-)NCBILyon_Normotensive
Lyon_Hypertensive3129,639,696 - 129,675,529 (-)NCBILyon_Hypertensive
F344_StmMcwi3110,944,224 - 110,980,059 (-)NCBIF344_StmMcwi
Rnor_6.03117,353,490 - 117,389,582 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3117,354,382 - 117,389,561 (-)Ensemblrn6Rnor6.0
Rnor_5.03123,877,348 - 123,913,393 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43112,386,454 - 112,422,182 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3111,196,494 - 111,225,673 (-)NCBICelera
RGSC_v3.13112,292,700 - 112,346,816 (-)NCBI
Cytogenetic Map3q36NCBI
MYEF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381548,134,632 - 48,178,295 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1548,134,632 - 48,178,353 (-)Ensemblhg38GRCh38
GRCh371548,426,829 - 48,470,492 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361546,218,921 - 46,257,850 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341546,219,718 - 46,257,788NCBI
Celera1525,324,149 - 25,363,072 (-)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1525,264,821 - 25,303,642 (-)NCBIHuRef
CHM1_11548,549,821 - 48,588,754 (-)NCBICHM1_1
T2T-CHM13v2.01545,942,725 - 45,986,393 (-)NCBIT2T-CHM13v2.0
Myef2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392124,922,894 - 124,966,727 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2124,926,548 - 124,965,581 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382125,080,975 - 125,123,660 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,084,628 - 125,123,661 (-)Ensemblmm10GRCm38
MGSCv372124,912,007 - 124,949,396 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362124,780,315 - 124,808,316 (-)NCBIMGSCv36mm8
Celera2126,336,875 - 126,374,154 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.16NCBI
Myef2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554095,714,124 - 5,747,140 (+)Ensembl
ChiLan1.0NW_0049554095,713,495 - 5,747,528 (+)NCBIChiLan1.0ChiLan1.0
MYEF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21637,380,013 - 37,418,879 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11541,561,352 - 41,600,185 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01527,086,001 - 27,127,313 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11545,412,593 - 45,442,003 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1545,412,593 - 45,443,600 (-)EnsemblpanPan2panpan1.1
MYEF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13014,399,747 - 14,447,113 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3014,399,966 - 14,425,141 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3014,314,422 - 14,352,808 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03014,526,600 - 14,564,962 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3014,532,118 - 14,564,995 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13014,449,378 - 14,487,752 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03014,564,832 - 14,603,202 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03014,676,665 - 14,715,046 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Myef2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864092,640,033 - 92,698,741 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647110,492,803 - 10,519,059 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647110,492,548 - 10,519,549 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYEF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1123,600,908 - 123,638,236 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11123,582,836 - 123,642,879 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21137,612,460 - 137,665,180 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MYEF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12635,107,127 - 35,145,344 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2635,107,227 - 35,142,543 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666048105,962,911 - 106,004,635 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myef2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473111,517,526 - 11,552,450 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473111,501,232 - 11,554,818 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Myef2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15103,398,272 - 103,442,878 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Myef2
122 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:109
Interacting mature miRNAs:127
Transcripts:ENSRNOT00000007103
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)3129154923182114333Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3122654702136118980Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)3116582412136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3101255536134750886Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)3131036586176036586Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)3131036586176036586Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)3125814931139636791Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat

Markers in Region
D3Got70  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23112,375,410 - 112,375,554 (+)MAPPERmRatBN7.2
Rnor_6.03117,390,873 - 117,391,016NCBIRnor6.0
Rnor_5.03123,914,684 - 123,914,827UniSTSRnor5.0
RGSC_v3.43112,423,598 - 112,423,742RGDRGSC3.4
RGSC_v3.43112,423,599 - 112,423,742UniSTSRGSC3.4
RGSC_v3.13112,329,172 - 112,329,315RGD
RH 3.4 Map3984.3UniSTS
RH 3.4 Map3984.3RGD
RH 2.0 Map3648.1RGD
Cytogenetic Map3q36UniSTS
BE116427  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23112,372,444 - 112,372,598 (+)MAPPERmRatBN7.2
Rnor_6.03117,387,907 - 117,388,060NCBIRnor6.0
Rnor_5.03123,911,718 - 123,911,871UniSTSRnor5.0
RGSC_v3.43112,420,632 - 112,420,785UniSTSRGSC3.4
Celera3111,230,661 - 111,230,814UniSTS
RH 3.4 Map3982.5UniSTS
Cytogenetic Map3q36UniSTS
RH137770  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23112,369,302 - 112,369,434 (+)MAPPERmRatBN7.2
Rnor_6.03117,384,762 - 117,384,893NCBIRnor6.0
Rnor_5.03123,908,620 - 123,908,751UniSTSRnor5.0
RGSC_v3.43112,417,515 - 112,417,646UniSTSRGSC3.4
Celera3111,227,554 - 111,227,685UniSTS
RH 3.4 Map3975.2UniSTS
Cytogenetic Map3q36UniSTS
BF390006  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23112,349,532 - 112,349,729 (+)MAPPERmRatBN7.2
Rnor_6.03117,364,782 - 117,364,978NCBIRnor6.0
Rnor_5.03123,888,640 - 123,888,836UniSTSRnor5.0
RGSC_v3.43112,397,745 - 112,397,941UniSTSRGSC3.4
Celera3111,207,784 - 111,207,980UniSTS
RH 3.4 Map3982.2UniSTS
Cytogenetic Map3q36UniSTS
AA893023  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23112,338,802 - 112,338,967 (+)MAPPERmRatBN7.2
Rnor_6.03117,354,052 - 117,354,216NCBIRnor6.0
Rnor_5.03123,877,910 - 123,878,074UniSTSRnor5.0
RGSC_v3.43112,387,016 - 112,387,180UniSTSRGSC3.4
Celera3111,197,056 - 111,197,220UniSTS
RH 3.4 Map3981.5UniSTS
Cytogenetic Map3q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000007103   ⟹   ENSRNOP00000007103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3132,791,694 - 132,827,523 (-)Ensembl
mRatBN7.2 Ensembl3112,338,241 - 112,374,181 (-)Ensembl
Rnor_6.0 Ensembl3117,354,581 - 117,389,456 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000043611   ⟹   ENSRNOP00000048644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3132,791,694 - 132,827,523 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000081533   ⟹   ENSRNOP00000072845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3132,791,694 - 132,827,523 (-)Ensembl
mRatBN7.2 Ensembl3112,338,241 - 112,374,181 (-)Ensembl
Rnor_6.0 Ensembl3117,354,382 - 117,389,561 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099942   ⟹   ENSRNOP00000077919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3132,791,694 - 132,827,523 (-)Ensembl
mRatBN7.2 Ensembl3112,338,241 - 112,368,156 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109676   ⟹   ENSRNOP00000081666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3132,791,694 - 132,827,523 (-)Ensembl
mRatBN7.2 Ensembl3112,338,241 - 112,368,156 (-)Ensembl
RefSeq Acc Id: NM_001013205   ⟹   NP_001013223
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83132,791,694 - 132,827,523 (-)NCBI
mRatBN7.23112,338,241 - 112,374,072 (-)NCBI
Dahl_SR_JrHsd3130,843,434 - 130,879,269 (-)NCBI
Lyon_Normotensive3137,759,876 - 137,795,709 (-)NCBI
Lyon_Hypertensive3129,639,696 - 129,675,529 (-)NCBI
F344_StmMcwi3110,944,224 - 110,980,059 (-)NCBI
Rnor_6.03117,353,490 - 117,389,456 (-)NCBI
Rnor_5.03123,877,348 - 123,913,393 (-)NCBI
RGSC_v3.43112,386,454 - 112,422,182 (-)RGD
Celera3111,196,494 - 111,225,673 (-)RGD
Sequence:
RefSeq Acc Id: XM_006234930   ⟹   XP_006234992
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83132,791,694 - 132,827,571 (-)NCBI
mRatBN7.23112,338,241 - 112,374,122 (-)NCBI
Rnor_6.03117,353,490 - 117,389,582 (-)NCBI
Rnor_5.03123,877,348 - 123,913,393 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234931   ⟹   XP_006234993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83132,791,694 - 132,827,572 (-)NCBI
mRatBN7.23112,338,241 - 112,373,994 (-)NCBI
Rnor_6.03117,353,490 - 117,389,582 (-)NCBI
Rnor_5.03123,877,348 - 123,913,393 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006234932   ⟹   XP_006234994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83132,791,694 - 132,827,571 (-)NCBI
mRatBN7.23112,338,773 - 112,373,994 (-)NCBI
Rnor_6.03117,353,490 - 117,389,582 (-)NCBI
Rnor_5.03123,877,348 - 123,913,393 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063284535   ⟹   XP_063140605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83132,791,694 - 132,819,332 (-)NCBI
RefSeq Acc Id: XM_063284536   ⟹   XP_063140606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83132,791,694 - 132,819,327 (-)NCBI
RefSeq Acc Id: XM_063284537   ⟹   XP_063140607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83132,791,694 - 132,819,324 (-)NCBI
RefSeq Acc Id: NP_001013223   ⟸   NM_001013205
- UniProtKB: A0A0G2K402 (UniProtKB/TrEMBL),   D4AEI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234992   ⟸   XM_006234930
- Peptide Label: isoform X4
- UniProtKB: D4AEI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234994   ⟸   XM_006234932
- Peptide Label: isoform X6
- UniProtKB: D4AEI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234993   ⟸   XM_006234931
- Peptide Label: isoform X5
- UniProtKB: D4AEI5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072845   ⟸   ENSRNOT00000081533
Ensembl Acc Id: ENSRNOP00000007103   ⟸   ENSRNOT00000007103
Ensembl Acc Id: ENSRNOP00000081666   ⟸   ENSRNOT00000109676
Ensembl Acc Id: ENSRNOP00000077919   ⟸   ENSRNOT00000099942
RefSeq Acc Id: XP_063140605   ⟸   XM_063284535
- Peptide Label: isoform X1
- UniProtKB: A6HPV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140606   ⟸   XM_063284536
- Peptide Label: isoform X2
- UniProtKB: A6HPV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140607   ⟸   XM_063284537
- Peptide Label: isoform X3
- UniProtKB: A6HPV5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000048644   ⟸   ENSRNOT00000043611
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K402-F1-model_v2 AlphaFold A0A0G2K402 1-591 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692377
Promoter ID:EPDNEW_R2901
Type:initiation region
Name:Myef2_1
Description:myelin expression factor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03117,389,530 - 117,389,590EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306547 AgrOrtholog
BioCyc Gene G2FUF-48051 BioCyc
Ensembl Genes ENSRNOG00000005258 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007103 ENTREZGENE
  ENSRNOT00000007103.8 UniProtKB/TrEMBL
  ENSRNOT00000043611.5 UniProtKB/TrEMBL
  ENSRNOT00000081533 ENTREZGENE
  ENSRNOT00000081533.3 UniProtKB/TrEMBL
  ENSRNOT00000099942 ENTREZGENE
  ENSRNOT00000099942.2 UniProtKB/TrEMBL
  ENSRNOT00000109676.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  NCX, central ion-binding region UniProtKB/TrEMBL
InterPro K/Na/Ca-exchanger UniProtKB/TrEMBL
  MYEF2_RRM1 UniProtKB/TrEMBL
  MYEF2_RRM3 UniProtKB/TrEMBL
  NaCa_Exmemb UniProtKB/TrEMBL
  NCX_ion-bd_dom_sf UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_RNP1 UniProtKB/TrEMBL
  RRT5_SRSF_SR UniProtKB/TrEMBL
KEGG Report rno:679712 UniProtKB/TrEMBL
NCBI Gene Myef2 ENTREZGENE
PANTHER PTHR23003:SF15 UniProtKB/TrEMBL
  RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  SODIUM/POTASSIUM/CALCIUM EXCHANGER UniProtKB/TrEMBL
  SODIUM_POTASSIUM_CALCIUM EXCHANGER 5 UniProtKB/TrEMBL
Pfam Na_Ca_ex UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PhenoGen Myef2 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005258 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0G2K402 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y9T8_RAT UniProtKB/TrEMBL
  A0A8I5ZTD6_RAT UniProtKB/TrEMBL
  A6HPV5 ENTREZGENE, UniProtKB/TrEMBL
  A6HPV7_RAT UniProtKB/TrEMBL
  D3ZFG9_RAT UniProtKB/TrEMBL
  D4AEI5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-11 Myef2  myelin expression factor 2  Myef2  myelin basic protein expression factor 2, repressor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Myef2  myelin basic protein expression factor 2, repressor  Myef2_predicted  myelin basic protein expression factor 2, repressor (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Myef2_predicted  myelin basic protein expression factor 2, repressor (predicted)      Symbol and Name status set to approved 70820 APPROVED