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Gene: Dcaf5 (DDB1 and CUL4 associated factor 5) Rattus norvegicus

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Symbol:

Dcaf5

Name:

DDB1 and CUL4 associated factor 5

RGD ID:

1306535

Description:

Predicted to be involved in negative regulation of fatty acid biosynthetic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human DCAF5 (DDB1 and CUL4 associated factor 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

breakpoint cluster region protein, uterine leiomyoma, 2; DDB1- and CUL4-associated factor 5; DDB1- and CUL4-associated factor 5-like; LOC102553533; LOC314273; WD repeat domain 22; Wdr22

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DCAF5 (DDB1 and CUL4 associated factor 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Dcaf5 (DDB1 and CUL4 associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dcaf5 (DDB1 and CUL4 associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DCAF5 (DDB1 and CUL4 associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DCAF5 (DDB1 and CUL4 associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dcaf5 (DDB1 and CUL4 associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DCAF5 (DDB1 and CUL4 associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DCAF5 (DDB1 and CUL4 associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dcaf5 (DDB1 and CUL4 associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Dcaf5 (DDB1 and CUL4 associated factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	DCAF5 (DDB1 and CUL4 associated factor 5)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Dcaf5 (DDB1 and CUL4 associated factor 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dcaf5 (ddb1 and cul4 associated factor 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dcaf5 (ddb1 and cul4 associated factor 5)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R11D1.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG42233	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dcaf5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dcaf5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	104,904,423 - 104,993,150 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	104,904,423 - 104,993,103 (-)	Ensembl				GRCr8
mRatBN7.2	6	99,171,506 - 99,260,183 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	99,171,506 - 99,260,110 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	99,594,245 - 99,682,572 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	99,893,357 - 99,981,686 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	99,273,351 - 99,362,039 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	103,516,586 - 103,605,288 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	103,516,586 - 103,605,256 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	111,691,590 - 111,780,260 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	103,364,401 - 103,451,568 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	97,527,557 - 97,615,982 (-)	NCBI		Celera
RGSC_v3.1	6	103,367,001 - 103,460,615 (-)	NCBI
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

FR900359 (ISO)

fulvestrant (ISO)

maneb (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

paracetamol (ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

rifampicin (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of fatty acid biosynthetic process (IBA)

protein ubiquitination (IEA)

Cellular Component

Cul4-RING E3 ubiquitin ligase complex (IBA,ISO)

cytoplasm (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16949367	PMID:18614015

Genomics

Comparative Map Data

Dcaf5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	104,904,423 - 104,993,150 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	104,904,423 - 104,993,103 (-)	Ensembl				GRCr8
mRatBN7.2	6	99,171,506 - 99,260,183 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	99,171,506 - 99,260,110 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	99,594,245 - 99,682,572 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	99,893,357 - 99,981,686 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	99,273,351 - 99,362,039 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	103,516,586 - 103,605,288 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	103,516,586 - 103,605,256 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	111,691,590 - 111,780,260 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	103,364,401 - 103,451,568 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	97,527,557 - 97,615,982 (-)	NCBI		Celera
RGSC_v3.1	6	103,367,001 - 103,460,615 (-)	NCBI
Cytogenetic Map	6	q24	NCBI

DCAF5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	69,050,881 - 69,153,197 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	69,050,881 - 69,153,179 (-)	Ensembl			hg38	GRCh38
GRCh37	14	69,517,598 - 69,619,914 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	68,587,395 - 68,689,502 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	68,587,394 - 68,689,502	NCBI
Celera	14	49,581,760 - 49,684,074 (-)	NCBI		Celera
Cytogenetic Map	14	q24.1	NCBI
HuRef	14	49,688,338 - 49,790,602 (-)	NCBI		HuRef
CHM1_1	14	69,455,892 - 69,558,157 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	63,263,958 - 63,366,302 (-)	NCBI		T2T-CHM13v2.0

Dcaf5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	80,382,622 - 80,483,375 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	80,382,622 - 80,483,375 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	80,335,848 - 80,436,601 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	80,335,848 - 80,436,601 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	81,436,834 - 81,537,588 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	81,255,531 - 81,355,387 (-)	NCBI		MGSCv36	mm8
Celera	12	81,801,313 - 81,901,674 (-)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	36.61	NCBI

Dcaf5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	1,216,300 - 1,322,704 (+)	Ensembl
ChiLan1.0	NW_004955466	1,216,966 - 1,322,704 (+)	NCBI	ChiLan1.0	ChiLan1.0

DCAF5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	70,171,258 - 70,273,611 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	69,387,772 - 69,490,173 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	49,640,440 - 49,743,118 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	68,514,979 - 68,616,974 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	68,514,979 - 68,616,968 (-)	Ensembl			panPan2	panpan1.1

DCAF5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	42,883,095 - 42,984,686 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	42,882,774 - 42,985,188 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	42,572,496 - 42,673,981 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	43,110,372 - 43,213,983 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	43,112,930 - 43,213,968 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	42,724,750 - 42,828,308 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	42,802,145 - 42,903,187 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	43,158,765 - 43,262,337 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dcaf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	61,806,363 - 61,902,051 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	12,288,748 - 12,356,919 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	12,289,648 - 12,357,640 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DCAF5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	92,715,384 - 92,812,979 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	92,717,544 - 92,813,297 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	98,963,907 - 99,037,731 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DCAF5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	46,273,732 - 46,384,141 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	46,272,395 - 46,384,144 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	34,506,663 - 34,615,648 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dcaf5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	31,911,080 - 32,031,634 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dcaf5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	94,421,004 - 94,510,247 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dcaf5
552 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	541
Count of miRNA genes:	281
Interacting mature miRNAs:	341
Transcripts:	ENSRNOT00000006005
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	99437079	125323237	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	99708426	112483760	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	64367996	109367996	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat

Markers in Region

D6Got128

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	99,184,967 - 99,185,094 (+)	MAPPER	mRatBN7.2
mRatBN7.2	6	99,181,714 - 99,181,865 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	103,530,048 - 103,530,174	NCBI	Rnor6.0
Rnor_6.0	6	103,526,795 - 103,526,945	NCBI	Rnor6.0
Rnor_5.0	6	111,705,052 - 111,705,178	UniSTS	Rnor5.0
Rnor_5.0	6	111,701,799 - 111,701,949	UniSTS	Rnor5.0
RGSC_v3.4	6	103,376,172 - 103,376,298	UniSTS	RGSC3.4
RGSC_v3.4	6	103,376,171 - 103,376,297	RGD	RGSC3.4
RGSC_v3.4	6	103,372,918 - 103,373,068	RGD	RGSC3.4
RGSC_v3.4	6	103,372,919 - 103,373,069	UniSTS	RGSC3.4
Celera	6	97,537,766 - 97,537,910	UniSTS
Celera	6	97,541,013 - 97,541,139	UniSTS
RGSC_v3.1	6	103,379,627 - 103,379,753	RGD
RH 3.4 Map	6	711.4	RGD
RH 3.4 Map	6	711.4	UniSTS
Cytogenetic Map	6	q24	UniSTS

D6Got130

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	99,200,655 - 99,200,861 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	103,545,735 - 103,545,940	NCBI	Rnor6.0
Rnor_5.0	6	111,720,739 - 111,720,944	UniSTS	Rnor5.0
RGSC_v3.4	6	103,391,859 - 103,392,064	UniSTS	RGSC3.4
RGSC_v3.4	6	103,391,858 - 103,392,064	RGD	RGSC3.4
RGSC_v3.1	6	103,395,315 - 103,395,520	RGD
RH 3.4 Map	6	707.6	UniSTS
RH 3.4 Map	6	707.6	RGD
Cytogenetic Map	6	q24	UniSTS

AI430035

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	99,171,552 - 99,171,739 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	103,516,633 - 103,516,819	NCBI	Rnor6.0
Rnor_5.0	6	111,691,637 - 111,691,823	UniSTS	Rnor5.0
RGSC_v3.4	6	103,362,757 - 103,362,943	UniSTS	RGSC3.4
Celera	6	97,527,604 - 97,527,790	UniSTS
Cytogenetic Map	6	q24	UniSTS

D14S848

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	99,174,193 - 99,174,526 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	103,519,274 - 103,519,606	NCBI	Rnor6.0
Rnor_5.0	6	111,694,278 - 111,694,610	UniSTS	Rnor5.0
RGSC_v3.4	6	103,365,398 - 103,365,730	UniSTS	RGSC3.4
Celera	6	97,530,245 - 97,530,577	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH91357

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	99,174,880 - 99,175,003 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	103,519,961 - 103,520,083	NCBI	Rnor6.0
Rnor_5.0	6	111,694,965 - 111,695,087	UniSTS	Rnor5.0
RGSC_v3.4	6	103,366,085 - 103,366,207	UniSTS	RGSC3.4
Celera	6	97,530,932 - 97,531,054	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH140793

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	99,171,599 - 99,171,749 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	103,516,680 - 103,516,829	NCBI	Rnor6.0
Rnor_5.0	6	111,691,684 - 111,691,833	UniSTS	Rnor5.0
RGSC_v3.4	6	103,362,804 - 103,362,953	UniSTS	RGSC3.4
Celera	6	97,527,651 - 97,527,800	UniSTS
RH 3.4 Map	6	704.0	UniSTS
Cytogenetic Map	6	q24	UniSTS

BI281105

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	99,259,151 - 99,259,315 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	103,604,298 - 103,604,461	NCBI	Rnor6.0
Rnor_5.0	6	111,779,302 - 111,779,465	UniSTS	Rnor5.0
RGSC_v3.4	6	103,450,628 - 103,450,791	UniSTS	RGSC3.4
Celera	6	97,615,024 - 97,615,187	UniSTS
RH 3.4 Map	6	711.0	UniSTS
Cytogenetic Map	6	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006005 ⟹ ENSRNOP00000006005

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	104,904,423 - 104,993,103 (-)	Ensembl
mRatBN7.2 Ensembl	6	99,171,506 - 99,260,110 (-)	Ensembl
Rnor_6.0 Ensembl	6	103,516,586 - 103,605,256 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094678 ⟹ ENSRNOP00000097052

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	104,904,423 - 104,973,503 (-)	Ensembl
mRatBN7.2 Ensembl	6	99,171,506 - 99,240,689 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000130678 ⟹ ENSRNOP00000106789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	104,904,423 - 104,992,274 (-)	Ensembl

RefSeq Acc Id:

NM_001100718 ⟹ NP_001094188

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	104,904,423 - 104,993,031 (-)	NCBI
mRatBN7.2	6	99,171,506 - 99,260,110 (-)	NCBI
Rnor_6.0	6	103,516,586 - 103,605,256 (-)	NCBI
Rnor_5.0	6	111,691,590 - 111,780,260 (-)	NCBI
Celera	6	97,527,557 - 97,615,982 (-)	NCBI

Sequence:

show sequence

GGCGGCGGCGGTTCCAGCATGAAGAGGAGAGCTGGCCTGGGGGGCAGCATGAGGTCAGTGGTGG
GCTTCTTGTCCCAGCGGGGCTTGCATGGGGACCCCCTGCTCACTCAGGACTTTCAGAGGAGACG
CCTGCGGGGCTGCAGAAACCTCTACAAGAAGGACCTTCTCGGCCACTTCGGCTGTGTCAATGCC
ATTGAATTCTCCAACAATGGAGGCCAGTGGCTGGTCTCAGGAGGAGACGACCGCCGAGTTCTGC
TATGGCACATGGAACAAGCTATCCATTCCAGGGTCAAACCCATACAGCTGAAAGGGGAGCACCA
TTCCAACATTTTCTGCCTGGCTTTCAACAGTGGGAACACCAAAGTATTCTCCGGAGGAAATGAT
GAGCAAGTCATCCTCCATGATGTTGAAAGCAGTGAGACCCTGGATGTGTTTGCTCATGAAGATG
CAGTATATGGCTTGTCAGTGAGCCCAGTGAATGACAACATTTTTGCCAGCTCTTCAGATGATGG
CCGGGTTCTCATTTGGGATATCCGGGAGTCTCCCCATGGAGAGCCCTTCTGCCTGGCAAACTAT
CCATCAGCCTTTCACAGTGTCATGTTTAACCCTGTGGAGCCCAGGTTATTGGCCACAGCCAATT
CAAAGGAAGGAGTGGGACTCTGGGACATTAGAAAGCCTCAGAGTTCTCTCCTGCGCTATGGTGG
CAACCTGTCTCTCCAGAGCGCCATGAGCGTGCGATTCAACAGCAACGGAACCCAGCTCCTGGCA
CTGCGCCGCCGCCTGCCTCCTGTCCTCTACGATATCCACTCACGCCTGCCAGTGTTCCAGTTCG
ACAATCAGGGTTACTTCAACTCTTGCACTATGAAGAGCTGCTGTTTTGCAGGGGATCGTGACCA
GTATATCCTTTCAGGCTCTGATGACTTCAACCTGTACATGTGGAAGGTCCCTGCAGATCCAGAA
GCCGGTGGCCTTGGCAGGGTGGTCAATGGAGCCTTCATGGTGCTGAAAGGGCATCGGTCCATCG
TTAACCAGGTCCGCTTTAACCCCCACACCTATATGATCTGCTCTTCTGGTGTGGAGAAGATTAT
CAAGATCTGGAGCCCATACAAGCAGCCAGGATGTACAGGAGACCTCGATGGTCGGATTGAAGAT
GATTCCCGCTGCCTCTACACCCATGAAGAGTACATCAGCCTTGTACTGAACAGTGGGAGTGGCC
TGTCCCACGACTACGCTAACCAGTCGGTCCAGGAAGACCCCCGGATGATGGCTTTCTTTGACTC
TTTGGTGCGCCGTGAAATCGAGGGCTGGAGCTCAGACTCAGACAGTGACCTCAGCGAGAGTACT
ATCCTTCAGCTGCATGCGGGCGTCAGTGAGCGCTCTGGCTACACTGACTCGGAGTCCTCAGCCT
CACTGCCCCGCTCCCCACCTCCCACAGTGGACGAGTCTGCTGACAATGCCTTCCACCTGGGGCC
CCTGCGAGTCACCACCACAAGTGCAGTGGTATCAACCCCAGCAACGCCAACATGTGAGGATGCG
GCCTCTCGACAGCAGCGCCTGTCCGCTCTGAGGCGCTATCAGGACAAACGCCTCCTGGCCCTGT
CCAATGAGTCTGATTCTGAAGAGAATGTTTGTGAGGCTGAACTGGACACAGATCTCTTCCCTCG
GCCACGGTCACCCAGCCCTGAGGATGGATCTAGCAGTTCCAGCAGCTCCACTAGCTCTGAGGAT
GAAGAAGAACTGAACCAACGCCGAGCCAACACCCGGCAGCGAAACGCCATGCGGAGGCGACAGA
AGACAGCCCGGGAAGAGCGGCCCAATGCTCCAGTCAAATCCACCAACACCTACATTGGAGAGGA
CAATTACGACTACCCACAGATCAAGGTAGATGACCTCTCCTCCTCCCCAAACTCCTCCCCTGAG
CGTAGCACTTCCACTCTGGATATTCAGCCAAGCCGGGCACCACCAGCTGCCAACATGGAATCAG
TTGAGCGTAAGATTTATAAAGCTTACAAATGGCTCCGCTACTCCTACATCTCTTACTCAAATAA
CAAAGATGGGGAAACCTCCCTAGTGACAGAGGAAGCAGATGAAGGAAGAGCAGGAACCAGCCAC
AAAGACAACCCAACCCCTTCTTCCAGTAAGGAAGCCTGTCTAACAGCCACAACCCAGAGGAGCC
AGGACCAGTCTCCTGAGGGCTGCAGCAGTGATGCTTGCAAAGAAGGGACGTCTGCTAGAAATCC
CAACAGCGGTGCAAGCCACGAGCACAGCGGCCATCCTTGGGCAGAGGTGCCAGAGGGCACCTCT
CAGGATGCTAACAACAGTGGCTCTCTGGAACACTCTTTTGAAACCAAGAAGCTCAATGGAAAGG
CTCTGTGCAAGGCCCTGAGCAGTCGGGCTGAGGAGCCATCCTCCCCTCCTGTCCCCAAGGCATC
GGGCTCCACTCTCAACAGTGCATCTGGCAACTGTCCCAGGACCCAGTCTGATGACAGTGAGGAG
AGGAGCCCTGACACCGTCTGTGCCAACCACAACAATGGACGCTTGCACCCCAGACCCCTTCACC
CCCACAACAATGGGCAGAACTCTGGGGAGCTGGAGTCAGTGGCCTGCTCTTCCCCAGGACACCT
AGACACTGACCATGATAGCCCATCCCTGACAGGGACACTCCTACACAAAGATTGTTGTGGGTCT
GAGATGGCCTGTGAGACCTCAACTGCTGGAATGAGAGAGGACCCCACTGACCCCTCAGCCATGG
ACAGCAGCAAGGTTGTTCATGGCCAAAGTGGCCTCAAAAGGCACCGAATTGAATTGGAAGACAC
AGATTCAGAGAATTCCTCCTCAGAGAAGAAATTAAAAACATGATAAATACAAAGGGAAAACAAA
AGCTACAAAAAGTAGCCTTACAAAATAATTTTTCTTGTTTAGTGAACACAGAGGAAAGGAAAAG
TATTAAAGGCACATAAAACCAGGGCCTGAAATGTGTCTGCTGCTGCTCCTTCTGTTAGCCACTC
ACCAGTGGTCGGATGTCTAGCTGGCACTGCCTCGTGCTCTGCTGAGAGCACTGCCAGCAGCTCT
TCTCTAGTGAGATGTAGCATAGCATCCCTGTGCAGGTTCTGTTACGATGAGCCCGTCTTGGGAC
ATTCGGCTTGTTCTGTGTGTGTGTGCCCACCGGCACATGTGGGCTTGTTGTCTTAGGAGACCTT
TCTTTTAACTGTCCATCAGCAAAGACCTGTGAATCTGTAGCTTTTGCCGTCACACCTGTTCATT
GTTCACATGACATGGTGTCCTGGTCGTAACAGAGTGTCTCTTAGATCAGAGTGTGCTGCAGTGA
CTTGTGGATTTATGTAGCAGAAAGGAGATGCAGATGAAAGAGGCCTTCCTTCAGCTCATTGGCT
GTGCTGAAGAGGAAAACATGGTTCCTTTTTTAAATGCTCCATGTTTTCTCCAGCTCACATATCA
CTGAGCATTTACTGTGGCTCTAAGTGGAACGTTGCTCTTGCTAATAAGAGGCTGACACTAGAGC
TCAGATCCTGGTAGTGTCGCTGTGTACAGAAGGGGCAGAGCTATGATACGTGCTGTGAGGTGCC
CGTACAATGACTAGTGGACAACACAACTTTAATCATTTAGGTGCTGGGTTCCTAAGAGGCACTC
AAGGCCAGCAGGTGCTTCCTTGGCTCCAGGTAATGGAGTCCAGGCATACTGAAAGAAGAAAGGT
CCCCTCGCTCTAATAGAAGAATGCTAATGAGTTGTAGTGAAGAGCAGAATGTGGTACTGTATTC
TAATCCAGTGCCAATCTATCAGTCAGAAATGGGGGCCAGCACCTTCCCTCAGGTGTGGAGTAGT
CAGAGCTGTGGGTTCCACCTGAACTTTGCAGAATAGTAACTTCTGTTAGGAGACAGGGAGTATG
GAGAGAAGTCTCTGGTTTGTGTGTCCTGGCTCCCAGAAGACATTCTGTGCTGTTGAAGTAGGTA
ACAGTGGAGAGAAGAAAATATCACATTTCCAGTGTGTAGTGGTGATCGTAGTCCCTGAGTTGTC
AATGAAGGGTCGTGCGAGGCAGGAAGACCTAAGGATGCTCCAGTGTCTTGGTGTAGATGGTAAA
GCAAGAGGAAGGCAGAAGTGGAACTTTGGGTGCAGAGGTGCTAGGCAACAGAGGGAGGGCTCAG
CACGAGGCAGCCGTGGCCTCACGGACCCCCAGTTCCTCTCTGAGGAGGACCTGTCCTGCTGGAA
TGGACCAAGAGAAGACCACCTGTGGAGGCTGAAGAATGGATACCCCTCAGTGCTGGGAGCCAGG
GCCCTTGTAAAGGAAGGCGCTTGGTAAGAGCCAGGGGTGTGTGTCATCTTTCTGAGCTTCGCAG
AAGGGAGATGTGCCTAGTATTTGTGTGTGTGGCTGAAGTGTAGAAGCACGGTTTGGAAAGGAGA
GGAAGGCGCCTGAGTAGGGCGGGGGTGCATACAGTCAGCTGCTGGACTCTTCCTGGGGAGCGGG
ACAGTGACTCTGTAACCAACCTTAGAATCACTTTAGATTTGTAATCAAAATGGTTCTATGATTT
ACCTTTTGACTATTCGCAGATAATTGTAAATTCTGGTTTTATAAGCCCAAGTCATTTTACATTT
GCTTTTTCAAAATTATTAAATTGGAATTTTTTAATCCTTTATATACAAAAAAAGAGTTATAAGC
ACTCAGTGTGTGTCTCTCTTCCCCTTAGTCAGCTTACCTGGTTCTTCTGTTCTGTTTTACTTTA
ATCAGATAGATTCACATTATCTTCCTGGAGGAAAAAGAAAGCAAAATTAGCTATTGATAATTAG
TTTCCAAATGCCAAGAGTGGTCTTTCATTGCTAAAAGTTATCTCATTTGGGTATTCAAAAACAT
TCAAAAAGTCAGTTAGTTTGTAACTGTAGACACCGATAAAGGTCATCCTTTGCAGGATGCTACC
AGTGCCATAAGTTTGGGTTGTCAGGAGATGGGCCCTAAAAAATGACCAGAGCAGGACAGAAAGG
GATGCTTCTTTTAGCCAGTCTACACCCACTTCAGAGCTCTTGTGTTGTGTGGTCCTGGTATTGG
AATCCTGGCCAGAACTACTTCACAGCCCCTTTGCCTAAACCATTGTGGAAGCCAGGCCTCCCAT
GTTGAAGACATTTTAATCCCCAAATTCCCCCATGATGTCTGTTTTCCCTAGCAGCAGAGGGCAC
TGATCAGATGGATTTTGTTCCTGCACCCTGTACATAATGTTTTGAGTGGCAGGTCCAGGGACGT
GAGACCGTTGCTCTTCCCTTTGTTTCTCTCCTGGTTTTGTAAATGATTCTCAACTGATATATGA
GTTCAATGAGCTGTTGGCTTGAGGCAAATGAAGTTTGCAACTGTGCTGATTTAATAGGAGTCTC
GTGTTGTCTGTCAAGGTGCCTTCCTCTGCTGAAGCCTTACCTCTTCGCAGCCCTGCCTCTTCTT
ACCCAACAATGCTGACTCTTCTCTGTGTATATGCAAATAAACCTATTAATCACTTCC

hide sequence

RefSeq Acc Id:

XM_006240279 ⟹ XP_006240341

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	104,904,424 - 104,993,118 (-)	NCBI
mRatBN7.2	6	99,171,507 - 99,260,183 (-)	NCBI
Rnor_6.0	6	103,516,587 - 103,605,285 (-)	NCBI
Rnor_5.0	6	111,691,590 - 111,780,260 (-)	NCBI

Sequence:

show sequence

GGAGGGGCGGCGGCGCGAGCTGCGGCGGCGGCGGCGGCGGTTCCAGCATGAAGAGGAGAGCTGG
CCTGGGGGGCAGCATGAGGAGGAGACGACCGCCGAGTTCTGCTATGGCACATGGAACAAGCTAT
CCATTCCAGGGTCAAACCCATACAGCTGAAAGGGGAGCACCATTCCAACATTTTCTGCCTGGCT
TTCAACAGTGGGAACACCAAAGTATTCTCCGGAGGAAATGATGAGCAAGTCATCCTCCATGATG
TTGAAAGCAGTGAGACCCTGGATGTGTTTGCTCATGAAGATGCAGTATATGGCTTGTCAGTGAG
CCCAGTGAATGACAACATTTTTGCCAGCTCTTCAGATGATGGCCGGGTTCTCATTTGGGATATC
CGGGAGTCTCCCCATGGAGAGCCCTTCTGCCTGGCAAACTATCCATCAGCCTTTCACAGTGTCA
TGTTTAACCCTGTGGAGCCCAGGTTATTGGCCACAGCCAATTCAAAGGAAGGAGTGGGACTCTG
GGACATTAGAAAGCCTCAGAGTTCTCTCCTGCGCTATGGTGGCAACCTGTCTCTCCAGAGCGCC
ATGAGCGTGCGATTCAACAGCAACGGAACCCAGCTCCTGGCACTGCGCCGCCGCCTGCCTCCTG
TCCTCTACGATATCCACTCACGCCTGCCAGTGTTCCAGTTCGACAATCAGGGTTACTTCAACTC
TTGCACTATGAAGAGCTGCTGTTTTGCAGGGGATCGTGACCAGTATATCCTTTCAGGCTCTGAT
GACTTCAACCTGTACATGTGGAAGGTCCCTGCAGATCCAGAAGCCGGTGGCCTTGGCAGGGTGG
TCAATGGAGCCTTCATGGTGCTGAAAGGGCATCGGTCCATCGTTAACCAGGTCCGCTTTAACCC
CCACACCTATATGATCTGCTCTTCTGGTGTGGAGAAGATTATCAAGATCTGGAGCCCATACAAG
CAGCCAGGATGTACAGGAGACCTCGATGGTCGGATTGAAGATGATTCCCGCTGCCTCTACACCC
ATGAAGAGTACATCAGCCTTGTACTGAACAGTGGGAGTGGCCTGTCCCACGACTACGCTAACCA
GTCGGTCCAGGAAGACCCCCGGATGATGGCTTTCTTTGACTCTTTGGTGCGCCGTGAAATCGAG
GGCTGGAGCTCAGACTCAGACAGTGACCTCAGCGAGAGTACTATCCTTCAGCTGCATGCGGGCG
TCAGTGAGCGCTCTGGCTACACTGACTCGGAGTCCTCAGCCTCACTGCCCCGCTCCCCACCTCC
CACAGTGGACGAGTCTGCTGACAATGCCTTCCACCTGGGGCCCCTGCGAGTCACCACCACAAGT
GCAGTGGTATCAACCCCAGCAACGCCAACATGTGAGGATGCGGCCTCTCGACAGCAGCGCCTGT
CCGCTCTGAGGCGCTATCAGGACAAACGCCTCCTGGCCCTGTCCAATGAGTCTGATTCTGAAGA
GAATGTTTGTGAGGCTGAACTGGACACAGATCTCTTCCCTCGGCCACGGTCACCCAGCCCTGAG
GATGGATCTAGCAGTTCCAGCAGCTCCACTAGCTCTGAGGATGAAGAAGAACTGAACCAACGCC
GAGCCAACACCCGGCAGCGAAACGCCATGCGGAGGCGACAGAAGACAGCCCGGGAAGAGCGGCC
CAATGCTCCAGTCAAATCCACCAACACCTACATTGGAGAGGACAATTACGACTACCCACAGATC
AAGGTAGATGACCTCTCCTCCTCCCCAAACTCCTCCCCTGAGCGTAGCACTTCCACTCTGGATA
TTCAGCCAAGCCGGGCACCACCAGCTGCCAACATGGAATCAGTTGAGCGTAAGATTTATAAAGC
TTACAAATGGCTCCGCTACTCCTACATCTCTTACTCAAATAACAAAGATGGGGAAACCTCCCTA
GTGACAGAGGAAGCAGATGAAGGAAGAGCAGGAACCAGCCACAAAGACAACCCAACCCCTTCTT
CCAGTAAGGAAGCCTGTCTAACAGCCACAACCCAGAGGAGCCAGGACCAGTCTCCTGAGGGCTG
CAGCAGTGATGCTTGCAAAGAAGGGACGTCTGCTAGAAATCCCAACAGCGGTGCAAGCCACGAG
CACAGCGGCCATCCTTGGGCAGAGGTGCCAGAGGGCACCTCTCAGGATGCTAACAACAGTGGCT
CTCTGGAACACTCTTTTGAAACCAAGAAGCTCAATGGAAAGGCTCTGTGCAAGGCCCTGAGCAG
TCGGGCTGAGGAGCCATCCTCCCCTCCTGTCCCCAAGGCATCGGGCTCCACTCTCAACAGTGCA
TCTGGCAACTGTCCCAGGACCCAGTCTGATGACAGTGAGGAGAGGAGCCCTGACACCGTCTGTG
CCAACCACAACAATGGACGCTTGCACCCCAGACCCCTTCACCCCCACAACAATGGGCAGAACTC
TGGGGAGCTGGAGTCAGTGGCCTGCTCTTCCCCAGGACACCTAGACACTGACCATGATAGCCCA
TCCCTGACAGGGACACTCCTACACAAAGATTGTTGTGGGTCTGAGATGGCCTGTGAGACCTCAA
CTGCTGGAATGAGAGAGGACCCCACTGACCCCTCAGCCATGGACAGCAGCAAGGTTGTTCATGG
CCAAAGTGGCCTCAAAAGGCACCGAATTGAATTGGAAGACACAGATTCAGAGAATTCCTCCTCA
GAGAAGAAATTAAAAACATGATAAATACAAAGGGAAAACAAAAGCTACAAAAAGTAGCCTTACA
AAATAATTTTTCTTGTTTAGTGAACACAGAGGAAAGGAAAAGTATTAAAGGCACATAAAACCAG
GGCCTGAAATGTGTCTGCTGCTGCTCCTTCTGTTAGCCACTCACCAGTGGTCGGATGTCTAGCT
GGCACTGCCTCGTGCTCTGCTGAGAGCACTGCCAGCAGCTCTTCTCTAGTGAGATGTAGCATAG
CATCCCTGTGCAGGTTCTGTTACGATGAGCCCGTCTTGGGACATTCGGCTTGTTCTGTGTGTGT
GTGCCCACCGGCACATGTGGGCTTGTTGTCTTAGGAGACCTTTCTTTTAACTGTCCATCAGCAA
AGACCTGTGAATCTGTAGCTTTTGCCGTCACACCTGTTCATTGTTCACATGACATGGTGTCCTG
GTCGTAACAGAGTGTCTCTTAGATCAGAGTGTGCTGCAGTGACTTGTGGATTTATGTAGCAGAA
AGGAGATGCAGATGAAAGAGGCCTTCCTTCAGCTCATTGGCTGTGCTGAAGAGGAAAACATGGT
TCCTTTTTTAAATGCTCCATGTTTTCTCCAGCTCACATATCACTGAGCATTTACTGTGGCTCTA
AGTGGAACGTTGCTCTTGCTAATAAGAGGCTGACACTAGAGCTCAGATCCTGGTAGTGTCGCTG
TGTACAGAAGGGGCAGAGCTATGATACGTGCTGTGAGGTGCCCGTACAATGACTAGTGGACAAC
ACAACTTTAATCATTTAGGTGCTGGGTTCCTAAGAGGCACTCAAGGCCAGCAGGTGCTTCCTTG
GCTCCAGGTAATGGAGTCCAGGCATACTGAAAGAAGAAAGGTCCCCTCGCTCTAATAGAAGAAT
GCTAATGAGTTGTAGTGAAGAGCAGAATGTGGTACTGTATTCTAATCCAGTGCCAATCTATCAG
TCAGAAATGGGGGCCAGCACCTTCCCTCAGGTGTGGAGTAGTCAGAGCTGTGGGTTCCACCTGA
ACTTTGCAGAATAGTAACTTCTGTTAGGAGACAGGGAGTATGGAGAGAAGTCTCTGGTTTGTGT
GTCCTGGCTCCCAGAAGACATTCTGTGCTGTTGAAGTAGGTAACAGTGGAGAGAAGAAAATATC
ACATTTCCAGTGTGTAGTGGTGATCGTAGTCCCTGAGTTGTCAATGAAGGGTCGTGCGAGGCAG
GAAGACCTAAGGATGCTCCAGTGTCTTGGTGTAGATGGTAAAGCAAGAGGAAGGCAGAAGTGGA
ACTTTGGGTGCAGAGGTGCTAGGCAACAGAGGGAGGGCTCAGCACGAGGCAGCCGTGGCCTCAC
GGACCCCCAGTTCCTCTCTGAGGAGGACCTGTCCTGCTGGAATGGACCAAGAGAAGACCACCTG
TGGAGGCTGAAGAATGGATACCCCTCAGTGCTGGGAGCCAGGGCCCTTGTAAAGGAAGGCGCTT
GGTAAGAGCCAGGGGTGTGTGTCATCTTTCTGAGCTTCGCAGAAGGGAGATGTGCCTAGTATTT
GTGTGTGTGGCTGAAGTGTAGAAGCACGGTTTGGAAAGGAGAGGAAGGCGCCTGAGTAGGGCGG
GGGTGCATACAGTCAGCTGCTGGACTCTTCCTGGGGAGCGGGACAGTGACTCTGTAACCAACCT
TAGAATCACTTTAGATTTGTAATCAAAATGGTTCTATGATTTACCTTTTGACTATTCGCAGATA
ATTGTAAATTCTGGTTTTATAAGCCCAAGTCATTTTACATTTGCTTTTTCAAAATTATTAAATT
GGAATTTTTTAATCCTTTATATACAAAAAAAGAGTTATAAGCACTCAGTGTGTGTCTCTCTTCC
CCTTAGTCAGCTTACCTGGTTCTTCTGTTCTGTTTTACTTTAATCAGATAGATTCACATTATCT
TCCTGGAGGAAAAAGAAAGCAAAATTAGCTATTGATAATTAGTTTCCAAATGCCAAGAGTGGTC
TTTCATTGCTAAAAGTTATCTCATTTGGGTATTCAAAAACATTCAAAAAGTCAGTTAGTTTGTA
ACTGTAGACACCGATAAAGGTCATCCTTTGCAGGATGCTACCAGTGCCATAAGTTTGGGTTGTC
AGGAGATGGGCCCTAAAAAATGACCAGAGCAGGACAGAAAGGGATGCTTCTTTTAGCCAGTCTA
CACCCACTTCAGAGCTCTTGTGTTGTGTGGTCCTGGTATTGGAATCCTGGCCAGAACTACTTCA
CAGCCCCTTTGCCTAAACCATTGTGGAAGCCAGGCCTCCCATGTTGAAGACATTTTAATCCCCA
AATTCCCCCATGATGTCTGTTTTCCCTAGCAGCAGAGGGCACTGATCAGATGGATTTTGTTCCT
GCACCCTGTACATAATGTTTTGAGTGGCAGGTCCAGGGACGTGAGACCGTTGCTCTTCCCTTTG
TTTCTCTCCTGGTTTTGTAAATGATTCTCAACTGATATATGAGTTCAATGAGCTGTTGGCTTGA
GGCAAATGAAGTTTGCAACTGTGCTGATTTAATAGGAGTCTCGTGTTGTCTGTCAAGGTGCCTT
CCTCTGCTGAAGCCTTACCTCTTCGCAGCCCTGCCTCTTCTTACCCAACAATGCTGACTCTTCT
CTGTGTATATGCAAATAAACCTATTAATCACTTC

hide sequence

RefSeq Acc Id:

XM_008764782 ⟹ XP_008763004

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	104,904,424 - 104,993,150 (-)	NCBI
mRatBN7.2	6	99,171,507 - 99,260,156 (-)	NCBI
Rnor_6.0	6	103,516,587 - 103,605,288 (-)	NCBI

Sequence:

show sequence

GAGGGAGGGGCGGCGGCGCGAGCTGCGGCGGCGGCGGCGGCGGTTCCAGCATGAAGAGGAGAGC
TGGCCTGGGGGGCAGCATGAGATTCTTGCTCCCTGCTAAAGGAGGAGACGACCGCCGAGTTCTG
CTATGGCACATGGAACAAGCTATCCATTCCAGGGTCAAACCCATACAGCTGAAAGGGGAGCACC
ATTCCAACATTTTCTGCCTGGCTTTCAACAGTGGGAACACCAAAGTATTCTCCGGAGGAAATGA
TGAGCAAGTCATCCTCCATGATGTTGAAAGCAGTGAGACCCTGGATGTGTTTGCTCATGAAGAT
GCAGTATATGGCTTGTCAGTGAGCCCAGTGAATGACAACATTTTTGCCAGCTCTTCAGATGATG
GCCGGGTTCTCATTTGGGATATCCGGGAGTCTCCCCATGGAGAGCCCTTCTGCCTGGCAAACTA
TCCATCAGCCTTTCACAGTGTCATGTTTAACCCTGTGGAGCCCAGGTTATTGGCCACAGCCAAT
TCAAAGGAAGGAGTGGGACTCTGGGACATTAGAAAGCCTCAGAGTTCTCTCCTGCGCTATGGTG
GCAACCTGTCTCTCCAGAGCGCCATGAGCGTGCGATTCAACAGCAACGGAACCCAGCTCCTGGC
ACTGCGCCGCCGCCTGCCTCCTGTCCTCTACGATATCCACTCACGCCTGCCAGTGTTCCAGTTC
GACAATCAGGGTTACTTCAACTCTTGCACTATGAAGAGCTGCTGTTTTGCAGGGGATCGTGACC
AGTATATCCTTTCAGGCTCTGATGACTTCAACCTGTACATGTGGAAGGTCCCTGCAGATCCAGA
AGCCGGTGGCCTTGGCAGGGTGGTCAATGGAGCCTTCATGGTGCTGAAAGGGCATCGGTCCATC
GTTAACCAGGTCCGCTTTAACCCCCACACCTATATGATCTGCTCTTCTGGTGTGGAGAAGATTA
TCAAGATCTGGAGCCCATACAAGCAGCCAGGATGTACAGGAGACCTCGATGGTCGGATTGAAGA
TGATTCCCGCTGCCTCTACACCCATGAAGAGTACATCAGCCTTGTACTGAACAGTGGGAGTGGC
CTGTCCCACGACTACGCTAACCAGTCGGTCCAGGAAGACCCCCGGATGATGGCTTTCTTTGACT
CTTTGGTGCGCCGTGAAATCGAGGGCTGGAGCTCAGACTCAGACAGTGACCTCAGCGAGAGTAC
TATCCTTCAGCTGCATGCGGGCGTCAGTGAGCGCTCTGGCTACACTGACTCGGAGTCCTCAGCC
TCACTGCCCCGCTCCCCACCTCCCACAGTGGACGAGTCTGCTGACAATGCCTTCCACCTGGGGC
CCCTGCGAGTCACCACCACAAGTGCAGTGGTATCAACCCCAGCAACGCCAACATGTGAGGATGC
GGCCTCTCGACAGCAGCGCCTGTCCGCTCTGAGGCGCTATCAGGACAAACGCCTCCTGGCCCTG
TCCAATGAGTCTGATTCTGAAGAGAATGTTTGTGAGGCTGAACTGGACACAGATCTCTTCCCTC
GGCCACGGTCACCCAGCCCTGAGGATGGATCTAGCAGTTCCAGCAGCTCCACTAGCTCTGAGGA
TGAAGAAGAACTGAACCAACGCCGAGCCAACACCCGGCAGCGAAACGCCATGCGGAGGCGACAG
AAGACAGCCCGGGAAGAGCGGCCCAATGCTCCAGTCAAATCCACCAACACCTACATTGGAGAGG
ACAATTACGACTACCCACAGATCAAGGTAGATGACCTCTCCTCCTCCCCAAACTCCTCCCCTGA
GCGTAGCACTTCCACTCTGGATATTCAGCCAAGCCGGGCACCACCAGCTGCCAACATGGAATCA
GTTGAGCGTAAGATTTATAAAGCTTACAAATGGCTCCGCTACTCCTACATCTCTTACTCAAATA
ACAAAGATGGGGAAACCTCCCTAGTGACAGAGGAAGCAGATGAAGGAAGAGCAGGAACCAGCCA
CAAAGACAACCCAACCCCTTCTTCCAGTAAGGAAGCCTGTCTAACAGCCACAACCCAGAGGAGC
CAGGACCAGTCTCCTGAGGGCTGCAGCAGTGATGCTTGCAAAGAAGGGACGTCTGCTAGAAATC
CCAACAGCGGTGCAAGCCACGAGCACAGCGGCCATCCTTGGGCAGAGGTGCCAGAGGGCACCTC
TCAGGATGCTAACAACAGTGGCTCTCTGGAACACTCTTTTGAAACCAAGAAGCTCAATGGAAAG
GCTCTGTGCAAGGCCCTGAGCAGTCGGGCTGAGGAGCCATCCTCCCCTCCTGTCCCCAAGGCAT
CGGGCTCCACTCTCAACAGTGCATCTGGCAACTGTCCCAGGACCCAGTCTGATGACAGTGAGGA
GAGGAGCCCTGACACCGTCTGTGCCAACCACAACAATGGACGCTTGCACCCCAGACCCCTTCAC
CCCCACAACAATGGGCAGAACTCTGGGGAGCTGGAGTCAGTGGCCTGCTCTTCCCCAGGACACC
TAGACACTGACCATGATAGCCCATCCCTGACAGGGACACTCCTACACAAAGATTGTTGTGGGTC
TGAGATGGCCTGTGAGACCTCAACTGCTGGAATGAGAGAGGACCCCACTGACCCCTCAGCCATG
GACAGCAGCAAGGTTGTTCATGGCCAAAGTGGCCTCAAAAGGCACCGAATTGAATTGGAAGACA
CAGATTCAGAGAATTCCTCCTCAGAGAAGAAATTAAAAACATGATAAATACAAAGGGAAAACAA
AAGCTACAAAAAGTAGCCTTACAAAATAATTTTTCTTGTTTAGTGAACACAGAGGAAAGGAAAA
GTATTAAAGGCACATAAAACCAGGGCCTGAAATGTGTCTGCTGCTGCTCCTTCTGTTAGCCACT
CACCAGTGGTCGGATGTCTAGCTGGCACTGCCTCGTGCTCTGCTGAGAGCACTGCCAGCAGCTC
TTCTCTAGTGAGATGTAGCATAGCATCCCTGTGCAGGTTCTGTTACGATGAGCCCGTCTTGGGA
CATTCGGCTTGTTCTGTGTGTGTGTGCCCACCGGCACATGTGGGCTTGTTGTCTTAGGAGACCT
TTCTTTTAACTGTCCATCAGCAAAGACCTGTGAATCTGTAGCTTTTGCCGTCACACCTGTTCAT
TGTTCACATGACATGGTGTCCTGGTCGTAACAGAGTGTCTCTTAGATCAGAGTGTGCTGCAGTG
ACTTGTGGATTTATGTAGCAGAAAGGAGATGCAGATGAAAGAGGCCTTCCTTCAGCTCATTGGC
TGTGCTGAAGAGGAAAACATGGTTCCTTTTTTAAATGCTCCATGTTTTCTCCAGCTCACATATC
ACTGAGCATTTACTGTGGCTCTAAGTGGAACGTTGCTCTTGCTAATAAGAGGCTGACACTAGAG
CTCAGATCCTGGTAGTGTCGCTGTGTACAGAAGGGGCAGAGCTATGATACGTGCTGTGAGGTGC
CCGTACAATGACTAGTGGACAACACAACTTTAATCATTTAGGTGCTGGGTTCCTAAGAGGCACT
CAAGGCCAGCAGGTGCTTCCTTGGCTCCAGGTAATGGAGTCCAGGCATACTGAAAGAAGAAAGG
TCCCCTCGCTCTAATAGAAGAATGCTAATGAGTTGTAGTGAAGAGCAGAATGTGGTACTGTATT
CTAATCCAGTGCCAATCTATCAGTCAGAAATGGGGGCCAGCACCTTCCCTCAGGTGTGGAGTAG
TCAGAGCTGTGGGTTCCACCTGAACTTTGCAGAATAGTAACTTCTGTTAGGAGACAGGGAGTAT
GGAGAGAAGTCTCTGGTTTGTGTGTCCTGGCTCCCAGAAGACATTCTGTGCTGTTGAAGTAGGT
AACAGTGGAGAGAAGAAAATATCACATTTCCAGTGTGTAGTGGTGATCGTAGTCCCTGAGTTGT
CAATGAAGGGTCGTGCGAGGCAGGAAGACCTAAGGATGCTCCAGTGTCTTGGTGTAGATGGTAA
AGCAAGAGGAAGGCAGAAGTGGAACTTTGGGTGCAGAGGTGCTAGGCAACAGAGGGAGGGCTCA
GCACGAGGCAGCCGTGGCCTCACGGACCCCCAGTTCCTCTCTGAGGAGGACCTGTCCTGCTGGA
ATGGACCAAGAGAAGACCACCTGTGGAGGCTGAAGAATGGATACCCCTCAGTGCTGGGAGCCAG
GGCCCTTGTAAAGGAAGGCGCTTGGTAAGAGCCAGGGGTGTGTGTCATCTTTCTGAGCTTCGCA
GAAGGGAGATGTGCCTAGTATTTGTGTGTGTGGCTGAAGTGTAGAAGCACGGTTTGGAAAGGAG
AGGAAGGCGCCTGAGTAGGGCGGGGGTGCATACAGTCAGCTGCTGGACTCTTCCTGGGGAGCGG
GACAGTGACTCTGTAACCAACCTTAGAATCACTTTAGATTTGTAATCAAAATGGTTCTATGATT
TACCTTTTGACTATTCGCAGATAATTGTAAATTCTGGTTTTATAAGCCCAAGTCATTTTACATT
TGCTTTTTCAAAATTATTAAATTGGAATTTTTTAATCCTTTATATACAAAAAAAGAGTTATAAG
CACTCAGTGTGTGTCTCTCTTCCCCTTAGTCAGCTTACCTGGTTCTTCTGTTCTGTTTTACTTT
AATCAGATAGATTCACATTATCTTCCTGGAGGAAAAAGAAAGCAAAATTAGCTATTGATAATTA
GTTTCCAAATGCCAAGAGTGGTCTTTCATTGCTAAAAGTTATCTCATTTGGGTATTCAAAAACA
TTCAAAAAGTCAGTTAGTTTGTAACTGTAGACACCGATAAAGGTCATCCTTTGCAGGATGCTAC
CAGTGCCATAAGTTTGGGTTGTCAGGAGATGGGCCCTAAAAAATGACCAGAGCAGGACAGAAAG
GGATGCTTCTTTTAGCCAGTCTACACCCACTTCAGAGCTCTTGTGTTGTGTGGTCCTGGTATTG
GAATCCTGGCCAGAACTACTTCACAGCCCCTTTGCCTAAACCATTGTGGAAGCCAGGCCTCCCA
TGTTGAAGACATTTTAATCCCCAAATTCCCCCATGATGTCTGTTTTCCCTAGCAGCAGAGGGCA
CTGATCAGATGGATTTTGTTCCTGCACCCTGTACATAATGTTTTGAGTGGCAGGTCCAGGGACG
TGAGACCGTTGCTCTTCCCTTTGTTTCTCTCCTGGTTTTGTAAATGATTCTCAACTGATATATG
AGTTCAATGAGCTGTTGGCTTGAGGCAAATGAAGTTTGCAACTGTGCTGATTTAATAGGAGTCT
CGTGTTGTCTGTCAAGGTGCCTTCCTCTGCTGAAGCCTTACCTCTTCGCAGCCCTGCCTCTTCT
TACCCAACAATGCTGACTCTTCTCTGTGTATATGCAAATAAACCTATTAATCACTTC

hide sequence

RefSeq Acc Id:

XM_017594145 ⟹ XP_017449634

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	104,904,424 - 104,992,938 (-)	NCBI
mRatBN7.2	6	99,171,507 - 99,260,011 (-)	NCBI
Rnor_6.0	6	103,516,587 - 103,605,104 (-)	NCBI

Sequence:

show sequence

CAAGAAGGACCTTCTCGGCCACTTCGGCTGTGTCAATGCCATTGAATTCTCCAACAATGGAGGC
CAGTGGCTGGTCTCAGATTCTTGCTCCCTGCTAAAGGAGGAGACGACCGCCGAGTTCTGCTATG
GCACATGGAACAAGCTATCCATTCCAGGGTCAAACCCATACAGCTGAAAGGGGAGCACCATTCC
AACATTTTCTGCCTGGCTTTCAACAGTGGGAACACCAAAGTATTCTCCGGAGGAAATGATGAGC
AAGTCATCCTCCATGATGTTGAAAGCAGTGAGACCCTGGATGTGTTTGCTCATGAAGATGCAGT
ATATGGCTTGTCAGTGAGCCCAGTGAATGACAACATTTTTGCCAGCTCTTCAGATGATGGCCGG
GTTCTCATTTGGGATATCCGGGAGTCTCCCCATGGAGAGCCCTTCTGCCTGGCAAACTATCCAT
CAGCCTTTCACAGTGTCATGTTTAACCCTGTGGAGCCCAGGTTATTGGCCACAGCCAATTCAAA
GGAAGGAGTGGGACTCTGGGACATTAGAAAGCCTCAGAGTTCTCTCCTGCGCTATGGTGGCAAC
CTGTCTCTCCAGAGCGCCATGAGCGTGCGATTCAACAGCAACGGAACCCAGCTCCTGGCACTGC
GCCGCCGCCTGCCTCCTGTCCTCTACGATATCCACTCACGCCTGCCAGTGTTCCAGTTCGACAA
TCAGGGTTACTTCAACTCTTGCACTATGAAGAGCTGCTGTTTTGCAGGGGATCGTGACCAGTAT
ATCCTTTCAGGCTCTGATGACTTCAACCTGTACATGTGGAAGGTCCCTGCAGATCCAGAAGCCG
GTGGCCTTGGCAGGGTGGTCAATGGAGCCTTCATGGTGCTGAAAGGGCATCGGTCCATCGTTAA
CCAGGTCCGCTTTAACCCCCACACCTATATGATCTGCTCTTCTGGTGTGGAGAAGATTATCAAG
ATCTGGAGCCCATACAAGCAGCCAGGATGTACAGGAGACCTCGATGGTCGGATTGAAGATGATT
CCCGCTGCCTCTACACCCATGAAGAGTACATCAGCCTTGTACTGAACAGTGGGAGTGGCCTGTC
CCACGACTACGCTAACCAGTCGGTCCAGGAAGACCCCCGGATGATGGCTTTCTTTGACTCTTTG
GTGCGCCGTGAAATCGAGGGCTGGAGCTCAGACTCAGACAGTGACCTCAGCGAGAGTACTATCC
TTCAGCTGCATGCGGGCGTCAGTGAGCGCTCTGGCTACACTGACTCGGAGTCCTCAGCCTCACT
GCCCCGCTCCCCACCTCCCACAGTGGACGAGTCTGCTGACAATGCCTTCCACCTGGGGCCCCTG
CGAGTCACCACCACAAGTGCAGTGGTATCAACCCCAGCAACGCCAACATGTGAGGATGCGGCCT
CTCGACAGCAGCGCCTGTCCGCTCTGAGGCGCTATCAGGACAAACGCCTCCTGGCCCTGTCCAA
TGAGTCTGATTCTGAAGAGAATGTTTGTGAGGCTGAACTGGACACAGATCTCTTCCCTCGGCCA
CGGTCACCCAGCCCTGAGGATGGATCTAGCAGTTCCAGCAGCTCCACTAGCTCTGAGGATGAAG
AAGAACTGAACCAACGCCGAGCCAACACCCGGCAGCGAAACGCCATGCGGAGGCGACAGAAGAC
AGCCCGGGAAGAGCGGCCCAATGCTCCAGTCAAATCCACCAACACCTACATTGGAGAGGACAAT
TACGACTACCCACAGATCAAGGTAGATGACCTCTCCTCCTCCCCAAACTCCTCCCCTGAGCGTA
GCACTTCCACTCTGGATATTCAGCCAAGCCGGGCACCACCAGCTGCCAACATGGAATCAGTTGA
GCGTAAGATTTATAAAGCTTACAAATGGCTCCGCTACTCCTACATCTCTTACTCAAATAACAAA
GATGGGGAAACCTCCCTAGTGACAGAGGAAGCAGATGAAGGAAGAGCAGGAACCAGCCACAAAG
ACAACCCAACCCCTTCTTCCAGTAAGGAAGCCTGTCTAACAGCCACAACCCAGAGGAGCCAGGA
CCAGTCTCCTGAGGGCTGCAGCAGTGATGCTTGCAAAGAAGGGACGTCTGCTAGAAATCCCAAC
AGCGGTGCAAGCCACGAGCACAGCGGCCATCCTTGGGCAGAGGTGCCAGAGGGCACCTCTCAGG
ATGCTAACAACAGTGGCTCTCTGGAACACTCTTTTGAAACCAAGAAGCTCAATGGAAAGGCTCT
GTGCAAGGCCCTGAGCAGTCGGGCTGAGGAGCCATCCTCCCCTCCTGTCCCCAAGGCATCGGGC
TCCACTCTCAACAGTGCATCTGGCAACTGTCCCAGGACCCAGTCTGATGACAGTGAGGAGAGGA
GCCCTGACACCGTCTGTGCCAACCACAACAATGGACGCTTGCACCCCAGACCCCTTCACCCCCA
CAACAATGGGCAGAACTCTGGGGAGCTGGAGTCAGTGGCCTGCTCTTCCCCAGGACACCTAGAC
ACTGACCATGATAGCCCATCCCTGACAGGGACACTCCTACACAAAGATTGTTGTGGGTCTGAGA
TGGCCTGTGAGACCTCAACTGCTGGAATGAGAGAGGACCCCACTGACCCCTCAGCCATGGACAG
CAGCAAGGTTGTTCATGGCCAAAGTGGCCTCAAAAGGCACCGAATTGAATTGGAAGACACAGAT
TCAGAGAATTCCTCCTCAGAGAAGAAATTAAAAACATGATAAATACAAAGGGAAAACAAAAGCT
ACAAAAAGTAGCCTTACAAAATAATTTTTCTTGTTTAGTGAACACAGAGGAAAGGAAAAGTATT
AAAGGCACATAAAACCAGGGCCTGAAATGTGTCTGCTGCTGCTCCTTCTGTTAGCCACTCACCA
GTGGTCGGATGTCTAGCTGGCACTGCCTCGTGCTCTGCTGAGAGCACTGCCAGCAGCTCTTCTC
TAGTGAGATGTAGCATAGCATCCCTGTGCAGGTTCTGTTACGATGAGCCCGTCTTGGGACATTC
GGCTTGTTCTGTGTGTGTGTGCCCACCGGCACATGTGGGCTTGTTGTCTTAGGAGACCTTTCTT
TTAACTGTCCATCAGCAAAGACCTGTGAATCTGTAGCTTTTGCCGTCACACCTGTTCATTGTTC
ACATGACATGGTGTCCTGGTCGTAACAGAGTGTCTCTTAGATCAGAGTGTGCTGCAGTGACTTG
TGGATTTATGTAGCAGAAAGGAGATGCAGATGAAAGAGGCCTTCCTTCAGCTCATTGGCTGTGC
TGAAGAGGAAAACATGGTTCCTTTTTTAAATGCTCCATGTTTTCTCCAGCTCACATATCACTGA
GCATTTACTGTGGCTCTAAGTGGAACGTTGCTCTTGCTAATAAGAGGCTGACACTAGAGCTCAG
ATCCTGGTAGTGTCGCTGTGTACAGAAGGGGCAGAGCTATGATACGTGCTGTGAGGTGCCCGTA
CAATGACTAGTGGACAACACAACTTTAATCATTTAGGTGCTGGGTTCCTAAGAGGCACTCAAGG
CCAGCAGGTGCTTCCTTGGCTCCAGGTAATGGAGTCCAGGCATACTGAAAGAAGAAAGGTCCCC
TCGCTCTAATAGAAGAATGCTAATGAGTTGTAGTGAAGAGCAGAATGTGGTACTGTATTCTAAT
CCAGTGCCAATCTATCAGTCAGAAATGGGGGCCAGCACCTTCCCTCAGGTGTGGAGTAGTCAGA
GCTGTGGGTTCCACCTGAACTTTGCAGAATAGTAACTTCTGTTAGGAGACAGGGAGTATGGAGA
GAAGTCTCTGGTTTGTGTGTCCTGGCTCCCAGAAGACATTCTGTGCTGTTGAAGTAGGTAACAG
TGGAGAGAAGAAAATATCACATTTCCAGTGTGTAGTGGTGATCGTAGTCCCTGAGTTGTCAATG
AAGGGTCGTGCGAGGCAGGAAGACCTAAGGATGCTCCAGTGTCTTGGTGTAGATGGTAAAGCAA
GAGGAAGGCAGAAGTGGAACTTTGGGTGCAGAGGTGCTAGGCAACAGAGGGAGGGCTCAGCACG
AGGCAGCCGTGGCCTCACGGACCCCCAGTTCCTCTCTGAGGAGGACCTGTCCTGCTGGAATGGA
CCAAGAGAAGACCACCTGTGGAGGCTGAAGAATGGATACCCCTCAGTGCTGGGAGCCAGGGCCC
TTGTAAAGGAAGGCGCTTGGTAAGAGCCAGGGGTGTGTGTCATCTTTCTGAGCTTCGCAGAAGG
GAGATGTGCCTAGTATTTGTGTGTGTGGCTGAAGTGTAGAAGCACGGTTTGGAAAGGAGAGGAA
GGCGCCTGAGTAGGGCGGGGGTGCATACAGTCAGCTGCTGGACTCTTCCTGGGGAGCGGGACAG
TGACTCTGTAACCAACCTTAGAATCACTTTAGATTTGTAATCAAAATGGTTCTATGATTTACCT
TTTGACTATTCGCAGATAATTGTAAATTCTGGTTTTATAAGCCCAAGTCATTTTACATTTGCTT
TTTCAAAATTATTAAATTGGAATTTTTTAATCCTTTATATACAAAAAAAGAGTTATAAGCACTC
AGTGTGTGTCTCTCTTCCCCTTAGTCAGCTTACCTGGTTCTTCTGTTCTGTTTTACTTTAATCA
GATAGATTCACATTATCTTCCTGGAGGAAAAAGAAAGCAAAATTAGCTATTGATAATTAGTTTC
CAAATGCCAAGAGTGGTCTTTCATTGCTAAAAGTTATCTCATTTGGGTATTCAAAAACATTCAA
AAAGTCAGTTAGTTTGTAACTGTAGACACCGATAAAGGTCATCCTTTGCAGGATGCTACCAGTG
CCATAAGTTTGGGTTGTCAGGAGATGGGCCCTAAAAAATGACCAGAGCAGGACAGAAAGGGATG
CTTCTTTTAGCCAGTCTACACCCACTTCAGAGCTCTTGTGTTGTGTGGTCCTGGTATTGGAATC
CTGGCCAGAACTACTTCACAGCCCCTTTGCCTAAACCATTGTGGAAGCCAGGCCTCCCATGTTG
AAGACATTTTAATCCCCAAATTCCCCCATGATGTCTGTTTTCCCTAGCAGCAGAGGGCACTGAT
CAGATGGATTTTGTTCCTGCACCCTGTACATAATGTTTTGAGTGGCAGGTCCAGGGACGTGAGA
CCGTTGCTCTTCCCTTTGTTTCTCTCCTGGTTTTGTAAATGATTCTCAACTGATATATGAGTTC
AATGAGCTGTTGGCTTGAGGCAAATGAAGTTTGCAACTGTGCTGATTTAATAGGAGTCTCGTGT
TGTCTGTCAAGGTGCCTTCCTCTGCTGAAGCCTTACCTCTTCGCAGCCCTGCCTCTTCTTACCC
AACAATGCTGACTCTTCTCTGTGTATATGCAAATAAACCTATTAATCACTTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001094188	(Get FASTA)	NCBI Sequence Viewer
	XP_006240341	(Get FASTA)	NCBI Sequence Viewer
	XP_008763004	(Get FASTA)	NCBI Sequence Viewer
	XP_017449634	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79428	(Get FASTA)	NCBI Sequence Viewer
	EDM03743	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006005
	ENSRNOP00000006005.6
	ENSRNOP00000097052
	ENSRNOP00000097052.1
	ENSRNOP00000106789.1

RefSeq Acc Id:

NP_001094188 ⟸ NM_001100718

- UniProtKB:

G3V6K4 (UniProtKB/TrEMBL), A6HCI8 (UniProtKB/TrEMBL), A0A8I6AVX6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKRRAGLGGSMRSVVGFLSQRGLHGDPLLTQDFQRRRLRGCRNLYKKDLLGHFGCVNAIEFSNN
GGQWLVSGGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILH
DVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPFCLANYPSAFHS
VMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSVRFNSNGTQLLALRRRLP
PVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWKVPADPEAGGLGR
VVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSPYKQPGCTGDLDGRIEDDSRCLY
THEEYISLVLNSGSGLSHDYANQSVQEDPRMMAFFDSLVRREIEGWSSDSDSDLSESTILQLHA
GVSERSGYTDSESSASLPRSPPPTVDESADNAFHLGPLRVTTTSAVVSTPATPTCEDAASRQQR
LSALRRYQDKRLLALSNESDSEENVCEAELDTDLFPRPRSPSPEDGSSSSSSSTSSEDEEELNQ
RRANTRQRNAMRRRQKTAREERPNAPVKSTNTYIGEDNYDYPQIKVDDLSSSPNSSPERSTSTL
DIQPSRAPPAANMESVERKIYKAYKWLRYSYISYSNNKDGETSLVTEEADEGRAGTSHKDNPTP
SSSKEACLTATTQRSQDQSPEGCSSDACKEGTSARNPNSGASHEHSGHPWAEVPEGTSQDANNS
GSLEHSFETKKLNGKALCKALSSRAEEPSSPPVPKASGSTLNSASGNCPRTQSDDSEERSPDTV
CANHNNGRLHPRPLHPHNNGQNSGELESVACSSPGHLDTDHDSPSLTGTLLHKDCCGSEMACET
STAGMREDPTDPSAMDSSKVVHGQSGLKRHRIELEDTDSENSSSEKKLKT

hide sequence

RefSeq Acc Id:	XP_006240341 ⟸ XM_006240279
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AVX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQAIHSRVKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDVFAHEDAVY GLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKE GVGLWDIRKPQSSLLRYGGNLSLQSAMSVRFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQ GYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWKVPADPEAGGLGRVVNGAFMVLKGHRSIVNQ VRFNPHTYMICSSGVEKIIKIWSPYKQPGCTGDLDGRIEDDSRCLYTHEEYISLVLNSGSGLSH DYANQSVQEDPRMMAFFDSLVRREIEGWSSDSDSDLSESTILQLHAGVSERSGYTDSESSASLP RSPPPTVDESADNAFHLGPLRVTTTSAVVSTPATPTCEDAASRQQRLSALRRYQDKRLLALSNE SDSEENVCEAELDTDLFPRPRSPSPEDGSSSSSSSTSSEDEEELNQRRANTRQRNAMRRRQKTA REERPNAPVKSTNTYIGEDNYDYPQIKVDDLSSSPNSSPERSTSTLDIQPSRAPPAANMESVER KIYKAYKWLRYSYISYSNNKDGETSLVTEEADEGRAGTSHKDNPTPSSSKEACLTATTQRSQDQ SPEGCSSDACKEGTSARNPNSGASHEHSGHPWAEVPEGTSQDANNSGSLEHSFETKKLNGKALC KALSSRAEEPSSPPVPKASGSTLNSASGNCPRTQSDDSEERSPDTVCANHNNGRLHPRPLHPHN NGQNSGELESVACSSPGHLDTDHDSPSLTGTLLHKDCCGSEMACETSTAGMREDPTDPSAMDSS KVVHGQSGLKRHRIELEDTDSENSSSEKKLKT hide sequence

RefSeq Acc Id:	XP_008763004 ⟸ XM_008764782
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AVX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKRRAGLGGSMRFLLPAKGGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLAFNSGNTKVF SGGNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPF CLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSVRFNSNG TQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWKV PADPEAGGLGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSPYKQPGCTGDLD GRIEDDSRCLYTHEEYISLVLNSGSGLSHDYANQSVQEDPRMMAFFDSLVRREIEGWSSDSDSD LSESTILQLHAGVSERSGYTDSESSASLPRSPPPTVDESADNAFHLGPLRVTTTSAVVSTPATP TCEDAASRQQRLSALRRYQDKRLLALSNESDSEENVCEAELDTDLFPRPRSPSPEDGSSSSSSS TSSEDEEELNQRRANTRQRNAMRRRQKTAREERPNAPVKSTNTYIGEDNYDYPQIKVDDLSSSP NSSPERSTSTLDIQPSRAPPAANMESVERKIYKAYKWLRYSYISYSNNKDGETSLVTEEADEGR AGTSHKDNPTPSSSKEACLTATTQRSQDQSPEGCSSDACKEGTSARNPNSGASHEHSGHPWAEV PEGTSQDANNSGSLEHSFETKKLNGKALCKALSSRAEEPSSPPVPKASGSTLNSASGNCPRTQS DDSEERSPDTVCANHNNGRLHPRPLHPHNNGQNSGELESVACSSPGHLDTDHDSPSLTGTLLHK DCCGSEMACETSTAGMREDPTDPSAMDSSKVVHGQSGLKRHRIELEDTDSENSSSEKKLKT hide sequence

RefSeq Acc Id:	XP_017449634 ⟸ XM_017594145
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AVX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEQAIHSRVKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDVFAHEDAVY GLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKE GVGLWDIRKPQSSLLRYGGNLSLQSAMSVRFNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQ GYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWKVPADPEAGGLGRVVNGAFMVLKGHRSIVNQ VRFNPHTYMICSSGVEKIIKIWSPYKQPGCTGDLDGRIEDDSRCLYTHEEYISLVLNSGSGLSH DYANQSVQEDPRMMAFFDSLVRREIEGWSSDSDSDLSESTILQLHAGVSERSGYTDSESSASLP RSPPPTVDESADNAFHLGPLRVTTTSAVVSTPATPTCEDAASRQQRLSALRRYQDKRLLALSNE SDSEENVCEAELDTDLFPRPRSPSPEDGSSSSSSSTSSEDEEELNQRRANTRQRNAMRRRQKTA REERPNAPVKSTNTYIGEDNYDYPQIKVDDLSSSPNSSPERSTSTLDIQPSRAPPAANMESVER KIYKAYKWLRYSYISYSNNKDGETSLVTEEADEGRAGTSHKDNPTPSSSKEACLTATTQRSQDQ SPEGCSSDACKEGTSARNPNSGASHEHSGHPWAEVPEGTSQDANNSGSLEHSFETKKLNGKALC KALSSRAEEPSSPPVPKASGSTLNSASGNCPRTQSDDSEERSPDTVCANHNNGRLHPRPLHPHN NGQNSGELESVACSSPGHLDTDHDSPSLTGTLLHKDCCGSEMACETSTAGMREDPTDPSAMDSS KVVHGQSGLKRHRIELEDTDSENSSSEKKLKT hide sequence

Ensembl Acc Id:

ENSRNOP00000006005 ⟸ ENSRNOT00000006005

Ensembl Acc Id:

ENSRNOP00000097052 ⟸ ENSRNOT00000094678

Ensembl Acc Id:

ENSRNOP00000106789 ⟸ ENSRNOT00000130678

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V6K4-F1-model_v2	AlphaFold	G3V6K4	1-946	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306535	AgrOrtholog
BioCyc Gene	G2FUF-36936	BioCyc
Ensembl Genes	ENSRNOG00000004556	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006005	ENTREZGENE
	ENSRNOT00000006005.8	UniProtKB/TrEMBL
	ENSRNOT00000094678	ENTREZGENE
	ENSRNOT00000094678.2	UniProtKB/TrEMBL
	ENSRNOT00000130678.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7114611	IMAGE-MGC_LOAD
InterPro	DCAF8	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:314273	UniProtKB/TrEMBL
MGC_CLONE	MGC:94973	IMAGE-MGC_LOAD
NCBI Gene	314273	ENTREZGENE
PANTHER	DDB1- AND CUL4-ASSOCIATED FACTOR 5	UniProtKB/TrEMBL
	PTHR15574	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PhenoGen	Dcaf5	PhenoGen
PROSITE	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004556	RatGTEx
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	WD40_like	UniProtKB/TrEMBL
UniProt	A0A8I6AVX6	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L900_RAT	UniProtKB/TrEMBL
	A6HCI8	ENTREZGENE, UniProtKB/TrEMBL
	G3V6K4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Dcaf5	DDB1 and CUL4 associated factor 5	LOC102553533	DDB1- and CUL4-associated factor 5-like	Data merged from RGD:7747023	737654	PROVISIONAL
2013-12-18	LOC102553533	DDB1- and CUL4-associated factor 5-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-05-05	Dcaf5	DDB1 and CUL4 associated factor 5	Wdr22	WD repeat domain 22	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Wdr22	WD repeat domain 22	Wdr22_predicted	WD repeat domain 22 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Wdr22_predicted	WD repeat domain 22 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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