Nin (ninein) - Rat Genome Database

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Gene: Nin (ninein) Rattus norvegicus
Analyze
Symbol: Nin
Name: ninein
RGD ID: 1306492
Description: Predicted to enable microtubule minus-end binding activity. Predicted to be involved in centrosome localization; intracellular protein localization; and microtubule cytoskeleton organization. Predicted to act upstream of or within axonogenesis and positive regulation of axonogenesis. Predicted to be located in several cellular components, including axonal growth cone; dendrite; and microtubule cytoskeleton. Predicted to be part of centriolar subdistal appendage and ciliary transition fiber. Predicted to be active in centriole; mitotic spindle pole; and pericentriolar material. Human ortholog(s) of this gene implicated in Seckel syndrome 7. Orthologous to human NIN (ninein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100911256; LOC299117; ninein (GSK3B interacting protein); ninein-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8694,261,382 - 94,363,679 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl694,263,206 - 94,363,610 (-)EnsemblGRCr8
mRatBN7.2688,525,405 - 88,627,710 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl688,525,742 - 88,627,639 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx688,933,310 - 89,026,727 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0689,232,771 - 89,326,186 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0688,672,288 - 88,765,701 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0692,423,412 - 92,527,776 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl692,433,381 - 92,527,711 (-)Ensemblrn6Rnor6.0
Rnor_5.06101,871,336 - 101,976,601 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4692,135,196 - 92,229,044 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera687,027,675 - 87,121,154 (-)NCBICelera
RGSC_v3.1692,133,297 - 92,240,106 (-)NCBI
Cytogenetic Map6q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
acrolein  (ISO)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clodronic acid  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
ifosfamide  (ISO)
indometacin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
metformin  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nicotine  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
tubocurarine  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8834802   PMID:10934040   PMID:12927815   PMID:15147888   PMID:15784680   PMID:18331714   PMID:19625297   PMID:19829375   PMID:19841136   PMID:21399614   PMID:23213374   PMID:23386061  
PMID:23955340   PMID:24469809   PMID:24947469   PMID:25220058   PMID:25564561   PMID:25741725   PMID:27565344   PMID:29487109  


Genomics

Comparative Map Data
Nin
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8694,261,382 - 94,363,679 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl694,263,206 - 94,363,610 (-)EnsemblGRCr8
mRatBN7.2688,525,405 - 88,627,710 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl688,525,742 - 88,627,639 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx688,933,310 - 89,026,727 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0689,232,771 - 89,326,186 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0688,672,288 - 88,765,701 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0692,423,412 - 92,527,776 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl692,433,381 - 92,527,711 (-)Ensemblrn6Rnor6.0
Rnor_5.06101,871,336 - 101,976,601 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4692,135,196 - 92,229,044 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera687,027,675 - 87,121,154 (-)NCBICelera
RGSC_v3.1692,133,297 - 92,240,106 (-)NCBI
Cytogenetic Map6q24NCBI
NIN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381450,719,763 - 50,831,503 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1450,719,763 - 50,831,504 (-)Ensemblhg38GRCh38
GRCh371451,186,481 - 51,297,880 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361450,256,231 - 50,367,589 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341450,262,298 - 50,367,589NCBI
Celera1431,053,486 - 31,164,870 (-)NCBICelera
Cytogenetic Map14q22.1NCBI
HuRef1431,312,065 - 31,423,361 (-)NCBIHuRef
CHM1_11451,125,025 - 51,236,373 (-)NCBICHM1_1
T2T-CHM13v2.01444,925,893 - 45,037,887 (-)NCBIT2T-CHM13v2.0
Nin
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391270,058,209 - 70,160,575 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1270,058,209 - 70,160,491 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381270,011,435 - 70,113,811 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1270,011,435 - 70,113,717 (-)Ensemblmm10GRCm38
MGSCv371271,112,422 - 71,212,912 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361270,937,359 - 71,030,565 (-)NCBIMGSCv36mm8
Celera1271,112,888 - 71,213,474 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.94NCBI
Nin
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540912,075,543 - 12,174,977 (+)Ensembl
ChiLan1.0NW_00495540912,074,895 - 12,174,899 (+)NCBIChiLan1.0ChiLan1.0
NIN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21551,856,693 - 51,968,362 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11451,073,195 - 51,184,866 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01431,308,388 - 31,420,045 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11449,609,367 - 49,719,971 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1449,609,368 - 49,719,971 (-)EnsemblpanPan2panpan1.1
NIN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1827,100,740 - 27,199,269 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl827,104,262 - 27,189,463 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha826,854,111 - 26,952,416 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0827,282,252 - 27,377,562 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl827,282,252 - 27,377,344 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,934,315 - 27,032,265 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0827,007,040 - 27,105,591 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0827,351,852 - 27,450,290 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864059,294,245 - 59,402,187 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649514,791,216 - 14,897,449 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649514,791,246 - 14,897,454 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1180,479,758 - 180,592,241 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11180,477,269 - 180,621,980 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21200,771,335 - 200,871,767 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NIN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12427,792,147 - 27,909,577 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2427,792,397 - 27,910,129 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605316,100,254 - 16,210,224 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nin
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473118,106,355 - 18,188,022 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473118,097,483 - 18,196,136 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nin
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1783,699,489 - 83,800,596 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nin
433 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:267
Count of miRNA genes:175
Interacting mature miRNAs:200
Transcripts:ENSRNOT00000007529
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat

Markers in Region
BI293899  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2688,601,353 - 88,601,508 (+)MAPPERmRatBN7.2
Rnor_6.0692,501,175 - 92,501,329NCBIRnor6.0
Rnor_5.06101,948,560 - 101,948,714UniSTSRnor5.0
RGSC_v3.4692,202,762 - 92,202,916UniSTSRGSC3.4
Celera687,095,045 - 87,095,199UniSTS
RH 3.4 Map6627.6UniSTS
Cytogenetic Map6q24UniSTS
RH144501  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.06100,707,216 - 100,707,361NCBIRnor5.0
Rnor_5.06101,920,474 - 101,920,619NCBIRnor5.0
Rnor_5.0674,173,805 - 74,173,950NCBIRnor5.0
RGSC_v3.4692,174,673 - 92,174,817UniSTSRGSC3.4
Celera687,067,056 - 87,067,200UniSTS
RH 3.4 Map6630.2UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 90 89 58 92 58 6 355 192 11 144 81 87 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000007529   ⟹   ENSRNOP00000007529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl694,269,764 - 94,363,610 (-)Ensembl
mRatBN7.2 Ensembl688,533,787 - 88,627,639 (-)Ensembl
Rnor_6.0 Ensembl692,433,381 - 92,527,711 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000052408   ⟹   ENSRNOP00000044897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl694,271,855 - 94,363,610 (-)Ensembl
mRatBN7.2 Ensembl688,540,238 - 88,626,880 (-)Ensembl
Rnor_6.0 Ensembl691,207,178 - 91,250,138 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103711   ⟹   ENSRNOP00000086065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl694,267,360 - 94,363,610 (-)Ensembl
mRatBN7.2 Ensembl688,525,742 - 88,627,639 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108786   ⟹   ENSRNOP00000088832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl694,263,206 - 94,363,610 (-)Ensembl
mRatBN7.2 Ensembl688,525,742 - 88,627,639 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112425   ⟹   ENSRNOP00000086179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl694,271,855 - 94,363,610 (-)Ensembl
mRatBN7.2 Ensembl688,525,742 - 88,627,639 (-)Ensembl
RefSeq Acc Id: NM_001106737   ⟹   NP_001100207
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,269,764 - 94,363,610 (-)NCBI
mRatBN7.2688,533,787 - 88,627,639 (-)NCBI
Rnor_6.0692,433,381 - 92,527,711 (-)NCBI
Rnor_5.06101,871,336 - 101,976,601 (-)NCBI
RGSC_v3.4692,135,196 - 92,229,044 (-)RGD
Celera687,027,675 - 87,121,154 (-)RGD
Sequence:
RefSeq Acc Id: XM_006240158   ⟹   XP_006240220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,261,382 - 94,363,679 (-)NCBI
mRatBN7.2688,525,405 - 88,627,710 (-)NCBI
Rnor_6.0692,423,412 - 92,527,776 (-)NCBI
Rnor_5.06101,871,336 - 101,976,601 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764705   ⟹   XP_008762927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,261,382 - 94,363,679 (-)NCBI
mRatBN7.2688,525,405 - 88,627,709 (-)NCBI
Rnor_6.0692,423,412 - 92,527,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764706   ⟹   XP_008762928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,261,382 - 94,363,679 (-)NCBI
mRatBN7.2688,525,405 - 88,627,709 (-)NCBI
Rnor_6.0692,423,412 - 92,527,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764707   ⟹   XP_008762929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,269,763 - 94,363,679 (-)NCBI
mRatBN7.2688,533,786 - 88,627,709 (-)NCBI
Rnor_6.0692,433,380 - 92,527,776 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764708   ⟹   XP_008762930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,269,763 - 94,363,678 (-)NCBI
mRatBN7.2688,533,786 - 88,627,709 (-)NCBI
Rnor_6.0692,433,380 - 92,527,775 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764709   ⟹   XP_008762931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,271,855 - 94,363,679 (-)NCBI
mRatBN7.2688,535,897 - 88,627,710 (-)NCBI
Rnor_6.0692,435,537 - 92,527,776 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008764710   ⟹   XP_008762932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,261,382 - 94,363,677 (-)NCBI
mRatBN7.2688,525,405 - 88,627,707 (-)NCBI
Rnor_6.0692,423,412 - 92,527,773 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594089   ⟹   XP_017449578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,261,382 - 94,363,679 (-)NCBI
mRatBN7.2688,525,405 - 88,627,710 (-)NCBI
Rnor_6.0692,423,412 - 92,527,776 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594090   ⟹   XP_017449579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,271,855 - 94,363,679 (-)NCBI
mRatBN7.2688,535,897 - 88,627,710 (-)NCBI
Rnor_6.0692,435,537 - 92,527,776 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594091   ⟹   XP_017449580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,271,932 - 94,363,679 (-)NCBI
mRatBN7.2688,535,952 - 88,627,710 (-)NCBI
Rnor_6.0692,435,676 - 92,527,776 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111992   ⟹   XP_038967920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,261,382 - 94,363,679 (-)NCBI
mRatBN7.2688,525,405 - 88,627,710 (-)NCBI
RefSeq Acc Id: XM_039111993   ⟹   XP_038967921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,271,932 - 94,363,679 (-)NCBI
mRatBN7.2688,535,952 - 88,627,710 (-)NCBI
RefSeq Acc Id: XM_039111994   ⟹   XP_038967922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,261,382 - 94,363,677 (-)NCBI
mRatBN7.2688,525,405 - 88,627,708 (-)NCBI
RefSeq Acc Id: XM_063261705   ⟹   XP_063117775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,261,382 - 94,363,679 (-)NCBI
RefSeq Acc Id: XM_063261706   ⟹   XP_063117776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,269,763 - 94,363,679 (-)NCBI
RefSeq Acc Id: XM_063261708   ⟹   XP_063117778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,261,382 - 94,363,678 (-)NCBI
RefSeq Acc Id: XM_063261709   ⟹   XP_063117779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8694,269,763 - 94,363,676 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100207 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421173 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421174 (Get FASTA)   NCBI Sequence Viewer  
  XP_006240220 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762927 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762928 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762929 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762930 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762931 (Get FASTA)   NCBI Sequence Viewer  
  XP_008762932 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449578 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449579 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449580 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967920 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967921 (Get FASTA)   NCBI Sequence Viewer  
  XP_038967922 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117775 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117776 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117778 (Get FASTA)   NCBI Sequence Viewer  
  XP_063117779 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM03540 (Get FASTA)   NCBI Sequence Viewer  
  EDM03541 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007529
  ENSRNOP00000007529.5
  ENSRNOP00000044897
  ENSRNOP00000044897.7
  ENSRNOP00000086065.2
  ENSRNOP00000086179
  ENSRNOP00000086179.2
  ENSRNOP00000088832
  ENSRNOP00000088832.2
RefSeq Acc Id: NP_001100207   ⟸   NM_001106737
- UniProtKB: A6HBY6 (UniProtKB/TrEMBL),   A0A8I6A7B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240220   ⟸   XM_006240158
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762928   ⟸   XM_008764706
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A7B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762927   ⟸   XM_008764705
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A538 (UniProtKB/TrEMBL),   A0A8I6A7B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762932   ⟸   XM_008764710
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_008762930   ⟸   XM_008764708
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008762929   ⟸   XM_008764707
- Peptide Label: isoform X5
- UniProtKB: A0A8I6A7B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762931   ⟸   XM_008764709
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A7B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449578   ⟸   XM_017594089
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449579   ⟸   XM_017594090
- Peptide Label: isoform X10
- UniProtKB: A0A8I6A7B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449580   ⟸   XM_017594091
- Peptide Label: isoform X11
- UniProtKB: A0A8I6A7B7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007529   ⟸   ENSRNOT00000007529
RefSeq Acc Id: XP_038967920   ⟸   XM_039111992
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A7B7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967922   ⟸   XM_039111994
- Peptide Label: isoform X12
- UniProtKB: A0A8I6A5C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967921   ⟸   XM_039111993
- Peptide Label: isoform X9
- UniProtKB: A0A8I6A7B7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000044897   ⟸   ENSRNOT00000052408
Ensembl Acc Id: ENSRNOP00000086179   ⟸   ENSRNOT00000112425
Ensembl Acc Id: ENSRNOP00000088832   ⟸   ENSRNOT00000108786
Ensembl Acc Id: ENSRNOP00000086065   ⟸   ENSRNOT00000103711
RefSeq Acc Id: XP_063117775   ⟸   XM_063261705
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A7B7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117778   ⟸   XM_063261708
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063117776   ⟸   XM_063261706
- Peptide Label: isoform X6
- UniProtKB: A0A8I6A7B7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117779   ⟸   XM_063261709
- Peptide Label: isoform X15
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZIT3-F1-model_v2 AlphaFold D3ZIT3 1-1746 view protein structure
AF-D4A1J7-F1-model_v2 AlphaFold D4A1J7 1-2031 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694642
Promoter ID:EPDNEW_R5165
Type:multiple initiation site
Name:Nin_1
Description:ninein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0692,527,735 - 92,527,795EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306492 AgrOrtholog
BioCyc Gene G2FUF-37216 BioCyc
Ensembl Genes ENSRNOG00000005540 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000049104 Ensembl
Ensembl Transcript ENSRNOT00000007529 ENTREZGENE
  ENSRNOT00000007529.6 UniProtKB/TrEMBL
  ENSRNOT00000052408 ENTREZGENE
  ENSRNOT00000052408.7 UniProtKB/TrEMBL
  ENSRNOT00000103711.2 UniProtKB/TrEMBL
  ENSRNOT00000108786 ENTREZGENE
  ENSRNOT00000108786.2 UniProtKB/TrEMBL
  ENSRNOT00000112425 ENTREZGENE
  ENSRNOT00000112425.2 UniProtKB/TrEMBL
InterPro EF-hand-like_dom UniProtKB/TrEMBL
  EF_hand_Ca-bd UniProtKB/TrEMBL
KEGG Report rno:299117 UniProtKB/TrEMBL
NCBI Gene 299117 ENTREZGENE
PANTHER NINEIN UniProtKB/TrEMBL
  PTHR18905:SF11 UniProtKB/TrEMBL
PhenoGen Nin PhenoGen
PROSITE EF_HAND_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005540 RatGTEx
  ENSRNOG00000049104 RatGTEx
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8I6A538 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5C4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7B7 ENTREZGENE, UniProtKB/TrEMBL
  A6HBY6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZIT3_RAT UniProtKB/TrEMBL
  D4A1J7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Nin  ninein  LOC100911256  ninein-like  Data merged from RGD:6493757 737654 PROVISIONAL
2015-12-02 Nin  ninein  Nin  ninein (GSK3B interacting protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100911256  ninein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-24 Nin  ninein (GSK3B interacting protein)  Nin  ninein   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Nin  ninein   Nin_predicted  ninein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nin_predicted  ninein (predicted)      Symbol and Name status set to approved 70820 APPROVED