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Gene: Galnt3 (polypeptide N-acetylgalactosaminyltransferase 3) Rattus norvegicus

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Symbol:

Galnt3

Name:

polypeptide N-acetylgalactosaminyltransferase 3

RGD ID:

1306443

Description:

Predicted to enable calcium ion binding activity; manganese ion binding activity; and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation. Predicted to act upstream of or within several processes, including chondroitin sulfate proteoglycan biosynthetic process; limb development; and skeletal system development. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in Golgi apparatus. Orthologous to human GALNT3 (polypeptide N-acetylgalactosaminyltransferase 3); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC366061; MGC124508; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	71,150,559 - 71,187,321 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	71,150,571 - 71,174,323 (-)	Ensembl				GRCr8
mRatBN7.2	3	50,742,500 - 50,779,266 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	50,742,512 - 50,766,268 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	54,085,866 - 54,109,634 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	62,669,491 - 62,693,259 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	60,445,630 - 60,469,408 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	52,174,469 - 52,212,395 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	52,175,547 - 52,212,412 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	58,806,436 - 58,843,496 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	48,026,128 - 48,049,883 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	50,332,309 - 50,356,022 (-)	NCBI		Celera
RGSC_v3.1	3	47,923,236 - 47,946,144 (-)	NCBI
Cytogenetic Map	3	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

calcinosis (ISO)

Desbuquois dysplasia (ISO)

genetic disease (ISO)

hyperphosphatemia (ISO)

hyperphosphatemic familial tumoral calcinosis (ISO,ISS)

Hyperphosphatemic Familial Tumoral Calcinosis 1 (ISO)

Ovarian Neoplasms (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3',4'-dimethoxyflavone (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

all-trans-retinoic acid (ISO)

anthra[1,9-cd]pyrazol-6(2H)-one (ISO)

antimycin A (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (EXP,ISO)

cadmium dichloride (EXP,ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

carnosic acid (ISO)

CGP 52608 (ISO)

choline (ISO)

chromium(6+) (ISO)

ciguatoxin CTX1B (ISO)

copper atom (EXP)

copper(0) (EXP)

deguelin (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

diclofenac (EXP)

dieldrin (ISO)

diethyl phthalate (EXP)

dioxygen (EXP,ISO)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

Evodiamine (ISO)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

L-methionine (ISO)

lidocaine (EXP)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methimazole (EXP)

methoxychlor (EXP)

methylmercury chloride (ISO)

okadaic acid (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenylmercury acetate (ISO)

phosgene (ISO)

picoxystrobin (ISO)

poly(I:C) (ISO)

potassium chromate (ISO)

pyrimidifen (ISO)

quercetin (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 203580 (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

thifluzamide (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

Triptolide (EXP)

valproic acid (ISO)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (ISO)

biological_process (ND)

cell maturation (ISO)

chondrocyte development (ISO)

chondroitin sulfate proteoglycan biosynthetic process (ISO)

endochondral ossification (ISO)

gene expression (ISO)

limb development (ISO)

multicellular organism growth (ISO)

polysaccharide metabolic process (ISO)

protein O-linked glycosylation (IEA,ISO)

protein O-linked glycosylation via N-acetyl-galactosamine (IEA,ISO)

spermatogenesis (ISO)

Cellular Component

Golgi apparatus (IEA,ISO)

Golgi membrane (IEA)

perinuclear region of cytoplasm (IEA,ISO)

Molecular Function

calcium ion binding (IEA,ISO)

carbohydrate binding (IEA)

glycosyltransferase activity (IEA)

manganese ion binding (IEA,ISO)

metal ion binding (IEA)

polypeptide N-acetylgalactosaminyltransferase activity (IEA,ISO)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:9295285	PMID:12477932	PMID:12506059	PMID:16638743	PMID:18570454

Genomics

Comparative Map Data

Galnt3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	71,150,559 - 71,187,321 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	71,150,571 - 71,174,323 (-)	Ensembl				GRCr8
mRatBN7.2	3	50,742,500 - 50,779,266 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	50,742,512 - 50,766,268 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	54,085,866 - 54,109,634 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	62,669,491 - 62,693,259 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	60,445,630 - 60,469,408 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	52,174,469 - 52,212,395 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	52,175,547 - 52,212,412 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	58,806,436 - 58,843,496 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	48,026,128 - 48,049,883 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	50,332,309 - 50,356,022 (-)	NCBI		Celera
RGSC_v3.1	3	47,923,236 - 47,946,144 (-)	NCBI
Cytogenetic Map	3	q21	NCBI

GALNT3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	165,747,588 - 165,794,692 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	165,747,588 - 165,846,201 (-)	Ensembl			hg38	GRCh38
GRCh37	2	166,604,098 - 166,650,757 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	166,312,559 - 166,359,049 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	166,428,830 - 166,452,717	NCBI
Celera	2	160,214,267 - 160,260,749 (-)	NCBI		Celera
Cytogenetic Map	2	q24.3	NCBI
HuRef	2	158,486,232 - 158,532,744 (-)	NCBI		HuRef
CHM1_1	2	166,610,616 - 166,657,104 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	166,204,962 - 166,251,751 (-)	NCBI		T2T-CHM13v2.0

Galnt3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	65,913,110 - 65,955,217 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	65,913,110 - 65,955,338 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	66,082,766 - 66,125,056 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	66,082,766 - 66,124,994 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	65,920,823 - 65,962,850 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	65,884,272 - 65,934,377 (-)	NCBI		MGSCv36	mm8
Celera	2	67,762,030 - 67,803,898 (-)	NCBI		Celera
Cytogenetic Map	2	C1.3	NCBI
cM Map	2	38.99	NCBI

Galnt3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	8,379,164 - 8,406,988 (+)	Ensembl
ChiLan1.0	NW_004955449	8,365,951 - 8,406,988 (+)	NCBI	ChiLan1.0	ChiLan1.0

GALNT3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	68,400,623 - 68,447,618 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	68,413,360 - 68,467,548 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	53,014,933 - 53,066,330 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	170,492,482 - 170,539,231 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	170,335,216 - 170,539,231 (-)	Ensembl			panPan2	panpan1.1

GALNT3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	10,895,366 - 10,990,848 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	10,896,128 - 10,919,000 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	11,040,139 - 11,084,227 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	11,029,831 - 11,074,091 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	11,030,584 - 11,124,756 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	11,111,447 - 11,155,527 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	11,084,131 - 11,128,392 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	11,196,286 - 11,240,452 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Galnt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	128,040,946 - 128,145,958 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	13,538,258 - 13,576,657 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	13,538,349 - 13,576,608 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GALNT3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	72,293,614 - 72,342,435 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	72,276,502 - 72,343,524 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	80,794,975 - 80,818,272 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GALNT3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	51,237,150 - 51,284,301 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	51,236,756 - 51,259,062 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	148,228,855 - 148,279,748 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Galnt3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624787	3,559,903 - 3,591,615 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624787	3,557,946 - 3,613,235 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Galnt3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	43,530,674 - 43,568,199 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Galnt3
183 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	273
Count of miRNA genes:	175
Interacting mature miRNAs:	193
Transcripts:	ENSRNOT00000007615
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
634317	Bw117	Body weight QTL 117	3.58		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	59863663	73704481	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	59863663	87321459	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	53651826	98651826	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	48876619	93876619	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	48876619	93876619	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	47904172	92904172	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	87321459	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	48657744	93657744	Rat
10450816	Scl75	Serum cholesterol level QTL 75	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	58601291	71157804	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
10450813	Scl74	Serum cholesterol level QTL 74	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	58601291	71157804	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	37796919	82796919	Rat
2302276	Bw82	Body weight QTL 82	4.32		body mass (VT:0001259)	body weight (CMO:0000012)	3	59863663	83358329	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	48657744	93657744	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	50766145	95766145	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	50766145	95766145	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	48657744	93657744	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	83708931	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	48657744	93657744	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	37363734	82363734	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	48657744	93657744	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
10450852	Stl33	Serum triglyceride level QTL 33	3.4	0.05	blood LDL triglyceride amount (VT:0010699)	blood lipoprotein triglyceride level (CMO:0002685)	3	58601291	71157804	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

D3Rat40

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	50,766,449 - 50,766,577 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	52,199,493 - 52,199,620	NCBI	Rnor6.0
Rnor_5.0	3	58,830,614 - 58,830,741	UniSTS	Rnor5.0
RGSC_v3.4	3	48,050,064 - 48,050,192	RGD	RGSC3.4
RGSC_v3.4	3	48,050,065 - 48,050,192	UniSTS	RGSC3.4
Celera	3	50,356,204 - 50,356,327	UniSTS
RGSC_v3.1	3	47,946,436 - 47,946,564	RGD
RH 2.0 Map	3	418.3	RGD
FHH x ACI Map	3	34.98	RGD
Cytogenetic Map	3	q21	UniSTS

D3Rat66

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	71,157,684 - 71,157,804 (+)	Marker Load Pipeline
mRatBN7.2	3	50,749,627 - 50,749,747 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	52,182,673 - 52,182,792	NCBI	Rnor6.0
Rnor_5.0	3	58,813,794 - 58,813,913	UniSTS	Rnor5.0
RGSC_v3.4	3	48,033,244 - 48,033,364	RGD	RGSC3.4
RGSC_v3.4	3	48,033,245 - 48,033,364	UniSTS	RGSC3.4
Celera	3	50,339,425 - 50,339,544	UniSTS
RGSC_v3.1	3	47,929,617 - 47,929,736	RGD
RH 3.4 Map	3	609.5	UniSTS
RH 3.4 Map	3	609.5	RGD
RH 2.0 Map	3	416.3	RGD
FHH x ACI Map	3	36.06	RGD
Cytogenetic Map	3	q21	UniSTS

D3Got208

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	50,758,721 - 50,758,927 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	52,191,767 - 52,191,970	NCBI	Rnor6.0
Rnor_5.0	3	58,822,888 - 58,823,091	UniSTS	Rnor5.0
RGSC_v3.4	3	48,042,339 - 48,042,542	UniSTS	RGSC3.4
Celera	3	50,348,519 - 50,348,680	UniSTS
Cytogenetic Map	3	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	8	35	159	88	87	56	91	56	6	312	154	11	138	81	92	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001015032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB040674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC101886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007615 ⟹ ENSRNOP00000007615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	71,150,571 - 71,174,323 (-)	Ensembl
mRatBN7.2 Ensembl	3	50,742,512 - 50,766,268 (-)	Ensembl
Rnor_6.0 Ensembl	3	52,175,547 - 52,212,412 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094310 ⟹ ENSRNOP00000089927

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	71,150,571 - 71,174,323 (-)	Ensembl
mRatBN7.2 Ensembl	3	50,742,512 - 50,766,268 (-)	Ensembl

RefSeq Acc Id:

NM_001015032 ⟹ NP_001015032

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	71,150,570 - 71,174,323 (-)	NCBI
mRatBN7.2	3	50,742,511 - 50,766,268 (-)	NCBI
Rnor_6.0	3	52,175,558 - 52,199,311 (-)	NCBI
Rnor_5.0	3	58,806,436 - 58,843,496 (-)	NCBI
RGSC_v3.4	3	48,026,128 - 48,049,883 (-)	RGD
Celera	3	50,332,309 - 50,356,022 (-)	RGD

Sequence:

show sequence

AGGTCTTACCATTTAAAGAAACCCTTTTCCTGGCAAACCTATGCTAAAGAGTATAAGTAACAAA
GGAAACCATAACCGTCATCTGTCAAGTCACAAGCATTTAGCGCCAGAATGGCTCACCTCAAGCG
ACTAGTAAAATTACACATTAAAAGACATTACCATAGAAAGTTCTGGAAGCTTGGCGCAGTCATC
TTTTTCTTTTTAGTAGTTTTGATTTTGATGCAAAGAGAAGTAAGTGTTCAGTATTCCAAGGAGG
AATCAAAGATGGAGAGAAACTTGAAAAACAAAAACAAAATGTTTGACTTTATGCTCGAAGCCGT
AAATAATATTAAAGACGCAATGCCAAAGATGCAGATAGGGGCACCTATCAAGCAGAACATCGAC
GTCCCTGAGAGGCCCTGTCTGCAAGGGTACTACACCGCAGCAGAGTTGAAACCTGTCCTAGACC
GCCCACCTCAGGATTCTAATGCACCTGGTGCTTCCGGCAAGCCCTTTAAGATCACCCACCTCAG
CCCAGAGGAGCAGAAGGAGAAAGAGCGTGGGGAGACGAAGCACTGTTTCAACGCCTTTGCGAGT
GACAGAATTTCCTTACACCGAGATCTTGGACCTGACACCCGACCACCCGAATGTATTGAACAAA
AATTTAAGCGCTGCCCACCCCTGCCTACCACCAGTGTCATAATAGTCTTTCATAATGAAGCGTG
GTCCACACTGCTTAGGACCGTCCACAGTGTGCTCTATTCTTCACCTGCAATACTGCTGAAGGAG
ATCATTTTGGTGGACGATGCTAGTGTAGATGACTACTTGCATGAGAAACTAGAGGAATACATAA
AACAGTTTTCTATCGTGAAAATAGTCAGGCAGCAAGAGAGGAAAGGCCTGATCACGGCGCGGTT
GCTAGGGGCAGCTGTAGCAACTGCCGAGACGCTCACGTTCTTAGACGCTCACTGTGAGTGCTTC
TATGGTTGGTTGGAACCTTTGCTGGCCAGAATAGCTGAGAACTACACTGCCGTGGTGAGTCCAG
ACATTGCATCCATAGATCTAAACACATTTGAGTTCAACAAGCCTTCTCCGTACGGAAGCAACCA
CAACCGTGGGAATTTTGACTGGAGCCTTTCCTTTGGCTGGGAGTCACTTCCTGATCATGAGAAG
CAAAGAAGGAAAGATGAAACCTACCCAATTAAGACCCCCACCTTTGCAGGAGGCCTCTTTTCTA
TATCTAGAGACTATTTTGAGCATATTGGAAGTTACGATGAAGAAATGGAAATCTGGGGAGGTGA
AAACATAGAAATGTCATTCCGAGTATGGCAATGTGGTGGGCAGTTGGAGATTATGCCTTGCTCT
GTTGTTGGACATGTTTTTCGCAGCAAAAGCCCTCATACCTTTCCAAAAGGCACTCAGGTGATTG
CTCGTAACCAAGTTCGCCTCGCAGAAGTCTGGATGGACGAGTACAAGGAAATATTTTACAGGAG
AAACACAGATGCAGCAAAAATCGTTAAGCAAAAATCATTTGGTGATCTTTCAAAAAGATTTGAA
ATAAAGAAACGCCTTCAGTGTAAAAATTTTACATGGTACCTGAACACTATTTACCCAGAAGTGT
ATGTACCAGACCTTAATCCTGTTATATCCGGATATATTAAGAGTGTTGGTCAGCCTTTATGTCT
GGATGTCGGTGAGAATAACCAGGGAGACAAACCATTGATTCTGTACACGTGCCACGGCCTAGGG
GGAAATCAGTACTTTGAGTATTCTGCTCAGCGAGAAATCCGACACAACATCCAGAAGGAGTTAT
GTCTTCATGCTACTCAGGGTGTTGTCCAGCTGAAGGCATGTGTCTATAAAGGTCACAGGACAAT
CGCCCCTGGAGAACAGATATGGGAGATTCGGAAGGACCAACTTCTCTATAATCCATTATTTAGA
ATGTGCCTTTCATCAAATGGAGAGCATCCGAGCTTAGTGCCATGCGACACAACAGATCTACTCC
AAAAATGGATCTTTAGCCAAAATGATTAAGTGTTCCTTAAAATTAAGGAGTTGAAAAGGACATA
CTCTTCCTCATAAAACTGTGACTAGGCGTACACTGTAGTTGTTGAAAATTATGCAAAAGCAGCT
AATTGTAACTTATTCCAAGTGCATTTTCCTTATTTATATCTTAAGATGTCTATGTGGTGCCGCT
GCAGAAACCCTAGGGGTTTCCGTCTAAAAGCACAGCATCTAGAATACCAAAGACGATTCTGAAA
TGTCCAGATGCAGAAGAGAGATGTTTACAGTATGGAGAAAATAACTTTCCTAGTAAAGTGATGT
GTGCTTGTATCCTTGGGGACATGCACACCTCCATCCACACACTCACAGCTTAAAATGTTTCCCC
TGGTTTTAGGGAGAATAGGAAAAGATTTGATACTGTATTTTTATAACTATATAAAAATGGATCA
ATGAAGGTCAAGCCATTGGCCTTTCAGTACAAACCAGGAAATTTTTATAGATCTAGAATTTATT
GTTTTAAAATCCAGGTAAACTTTCGTTGTCTTTTGTTTACTTGTCTGTCAAATATTTCCTTAAA
TATGAAGTCAAATAAGGAGAGGACTATTTTTAACACTTAAATTTTTGGAAAATTTACAAATATT
TTTTAGTCTGAAGCCCATGCCACTCGATGCACACGAGTCTTCCCCAAATGGCTTTTCTGAAGTG
ACTGCACTGTGTGTTTTCCCAGAGTAAACTTTTTAAAAAATAAATAAACTTTATAAATTAAAAA
AAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234290 ⟹ XP_006234352

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	71,150,559 - 71,187,321 (-)	NCBI
mRatBN7.2	3	50,742,500 - 50,779,266 (-)	NCBI
Rnor_6.0	3	52,174,469 - 52,212,395 (-)	NCBI
Rnor_5.0	3	58,806,436 - 58,843,496 (-)	NCBI

Sequence:

show sequence

TGGGAGACTCGCAGAGGAAGAGGAGCCTTCGGCGCGGCCTCGCTTGGCAACGCGGGAGGCCCGG
CGGGAAGGCAGGAAGCGGCGGCGGAGGAGGAGTTGAGCCGAGCGGCCGCGGGAGCCACAGCCAC
CCGAGTCGCCGGCGCCGCCACCTGCACTTGGCTCTGGGCCCCCGCGGGCAGAGCCCCGGCCGGC
CGTCGCTTCCCGCCGCCTGCCCTGCCCACCTGCCAGGTCTTACCATTTAAAGAAACCCTTTTCC
TGGCAAACCTATGCTAAAGAGTATAAGTAACAAAGGAAACCATAACCGTCATCTGTCAAGTCAC
AAGCATTTAGCGCCAGAATGGCTCACCTCAAGCGACTAGTAAAATTACACATTAAAAGACATTA
CCATAGAAAGTTCTGGAAGCTTGGCGCAGTCATCTTTTTCTTTTTAGTAGTTTTGATTTTGATG
CAAAGAGAAGTAAGTGTTCAGTATTCCAAGGAGGAATCAAAGATGGAGAGAAACTTGAAAAACA
AAAACAAAATGTTTGACTTTATGCTCGAAGCCGTAAATAATATTAAAGACGCAATGCCAAAGAT
GCAGATAGGGGCACCTATCAAGCAGAACATCGACGTCCCTGAGAGGCCCTGTCTGCAAGGGTAC
TACACCGCAGCAGAGTTGAAACCTGTCCTAGACCGCCCACCTCAGGATTCTAATGCACCTGGTG
CTTCCGGCAAGCCCTTTAAGATCACCCACCTCAGCCCAGAGGAGCAGAAGGAGAAAGAGCGTGG
GGAGACGAAGCACTGTTTCAACGCCTTTGCGAGTGACAGAATTTCCTTACACCGAGATCTTGGA
CCTGACACCCGACCACCCGAATGTATTGAACAAAAATTTAAGCGCTGCCCACCCCTGCCTACCA
CCAGTGTCATAATAGTCTTTCATAATGAAGCGTGGTCCACACTGCTTAGGACCGTCCACAGTGT
GCTCTATTCTTCACCTGCAATACTGCTGAAGGAGATCATTTTGGTGGACGATGCTAGTGTAGAT
GACTACTTGCATGAGAAACTAGAGGAATACATAAAACAGTTTTCTATCGTGAAAATAGTCAGGC
AGCAAGAGAGGAAAGGCCTGATCACGGCGCGGTTGCTAGGGGCAGCTGTAGCAACTGCCGAGAC
GCTCACGTTCTTAGACGCTCACTGTGAGTGCTTCTATGGTTGGTTGGAACCTTTGCTGGCCAGA
ATAGCTGAGAACTACACTGCCGTGGTGAGTCCAGACATTGCATCCATAGATCTAAACACATTTG
AGTTCAACAAGCCTTCTCCGTACGGAAGCAACCACAACCGTGGGAATTTTGACTGGAGCCTTTC
CTTTGGCTGGGAGTCACTTCCTGATCATGAGAAGCAAAGAAGGAAAGATGAAACCTACCCAATT
AAGACCCCCACCTTTGCAGGAGGCCTCTTTTCTATATCTAGAGACTATTTTGAGCATATTGGAA
GTTACGATGAAGAAATGGAAATCTGGGGAGGTGAAAACATAGAAATGTCATTCCGAGTATGGCA
ATGTGGTGGGCAGTTGGAGATTATGCCTTGCTCTGTTGTTGGACATGTTTTTCGCAGCAAAAGC
CCTCATACCTTTCCAAAAGGCACTCAGGTGATTGCTCGTAACCAAGTTCGCCTCGCAGAAGTCT
GGATGGACGAGTACAAGGAAATATTTTACAGGAGAAACACAGATGCAGCAAAAATCGTTAAGCA
AAAATCATTTGGTGATCTTTCAAAAAGATTTGAAATAAAGAAACGCCTTCAGTGTAAAAATTTT
ACATGGTACCTGAACACTATTTACCCAGAAGTGTATGTACCAGACCTTAATCCTGTTATATCCG
GATATATTAAGAGTGTTGGTCAGCCTTTATGTCTGGATGTCGGTGAGAATAACCAGGGAGACAA
ACCATTGATTCTGTACACGTGCCACGGCCTAGGGGGAAATCAGTACTTTGAGTATTCTGCTCAG
CGAGAAATCCGACACAACATCCAGAAGGAGTTATGTCTTCATGCTACTCAGGGTGTTGTCCAGC
TGAAGGCATGTGTCTATAAAGGTCACAGGACAATCGCCCCTGGAGAACAGATATGGGAGATTCG
GAAGGACCAACTTCTCTATAATCCATTATTTAGAATGTGCCTTTCATCAAATGGAGAGCATCCG
AGCTTAGTGCCATGCGACACAACAGATCTACTCCAAAAATGGATCTTTAGCCAAAATGATTAAG
TGTTCCTTAAAATTAAGGAGTTGAAAAGGACATACTCTTCCTCATAAAACTGTGACTAGGCGTA
CACTGTAGTTGTTGAAAATTATGCAAAAGCAGCTAATTGTAACTTATTCCAAGTGCATTTTCCT
TATTTATATCTTAAGATGTCTATGTGGTGCCGCTGCAGAAACCCTAGGGGTTTCCGTCTAAAAG
CACAGCATCTAGAATACCAAAGACGATTCTGAAATGTCCAGATGCAGAAGAGAGATGTTTACAG
TATGGAGAAAATAACTTTCCTAGTAAAGTGATGTGTGCTTGTATCCTTGGGGACATGCACACCT
CCATCCACACACTCACAGTTTAAAATGTTTCCCCTGGTTTTAGGGAGAATAGGAAAAGATTTGA
TACTGTATTTTTATAACTATATAAAAATGGATCAATGAAGGTCAAGCCATTGGCCTTTCAGTAC
AAACCAGGAAATTTTTATAGATCTAGAATTTATTGTTTTAAAATCCAGGTAAACTTTCGTTGTC
TTTTGTTTACTTGTCTGTCAAATATTTCCTTAAATATGAAGTCAAATAAGGAGAGGACTATTTT
TAACACTTAAATTTTTGGAAAATTTACAAATATTTTTTAGTCTGAAGCCCATGCCACTCGATGC
ACACGAGTCTTCCCCAAATGGCTTTTCTGAAGTGACTACACTGTGTGTTTTCCCAGAGTAAACT
TTTTAAAAAATAAATAAACTTTATAAATTATTAGCTGTTAATAATGGTTCCTTTTTCCTTTCTA
GTAGTCTTATTTTCTTAGCGAAATTCACTAATCCTGAATATTTATGACACTGGATGTCAAATGG
AGAAACTTGGCTGAACTCTAAATGTCATTATTGATTCATTATACAGACTGTCTTCGCAATAGGG
TTATCTCATCAAATTAAAAAAGAGCCTTTTATTTACATGGAAAATGCAAATTAAAGGAAAAAAA
AAGAACCCTAAACACTATTACAAACCTTTGTTTCAGTTTTGTCCAGTTGGAGTAAGGTGTATGA
TTGGTGGTGGTGGGAGGGAAGTGCCCTTTTTTTATTTTTTTATTCTAGGTTTCACTCCTCTGCT
GTTTATGGAGCCCCAGGTTCCTTTAAGGAAAATGTAAACCGTGACAGCAGTGTGACAGTTTACA
CAGGACAGAGCAGAAGTGAAGATGCCGATGGATATGTGAACATTTGATATGGTCACCATTTTGC
ATGGAGAGTATTATTCCAGAAGCAAAATAGAACGTGCACGAACCTTTAAAGCTAGTGGTTCTCA
GTTATACAAAGGAAAGCATTTCCTAGTATTACAGCTTCAATTAAAAAAATAAGGCATCTATTCA
ATTTTAAAAGTTGAACTGAAAATTCCACATCCTCTAGCCAGTCACTTTGGGGATTCTTATTCTA
GTTTAAGGAACATGAACCGTGTTTCTAACTTCGTATCATAGATTACAGAGGATGTAAAGCTTCC
GTTCATCTGTCTCTTTAGGGTAGAGAGAAAAGCACACCCTTTTGAAACAGTATGCTGCTATGTT
ATATTTTTATGACTAAGATGACTTCCAACATTTTAACTTTGACACTTTATTAATGATAAATGTT
TCTCTATGATTGTAGCTAACAGTGATATGTACCAGTAAGCATACTATAGTTGGCCACTCAGATG
TGCAATTTCTGCTCCTCAGTTTGTTCCACCAGACGTGAATGATTATAAGCAAAAGCTACCCTCA
ATGCTTGTTTCACCTCTAAAATCAGTACAAAACTAAGCAATTCCCCAATGATATTTTTATAAAG
CAAACCCGAGTAAAACATGTTTTGTTTTTTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001015032	(Get FASTA)	NCBI Sequence Viewer
	XP_006234352	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI01887	(Get FASTA)	NCBI Sequence Viewer
	BAD93347	(Get FASTA)	NCBI Sequence Viewer
	EDL79029	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007615
	ENSRNOP00000007615.4
	ENSRNOP00000089927.1

RefSeq Acc Id:

NP_001015032 ⟸ NM_001015032

- UniProtKB:

Q3T1J4 (UniProtKB/TrEMBL), A6HLX8 (UniProtKB/TrEMBL), Q58A69 (UniProtKB/TrEMBL), F7FMK3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAHLKRLVKLHIKRHYHRKFWKLGAVIFFFLVVLILMQREVSVQYSKEESKMERNLKNKNKMFD
FMLEAVNNIKDAMPKMQIGAPIKQNIDVPERPCLQGYYTAAELKPVLDRPPQDSNAPGASGKPF
KITHLSPEEQKEKERGETKHCFNAFASDRISLHRDLGPDTRPPECIEQKFKRCPPLPTTSVIIV
FHNEAWSTLLRTVHSVLYSSPAILLKEIILVDDASVDDYLHEKLEEYIKQFSIVKIVRQQERKG
LITARLLGAAVATAETLTFLDAHCECFYGWLEPLLARIAENYTAVVSPDIASIDLNTFEFNKPS
PYGSNHNRGNFDWSLSFGWESLPDHEKQRRKDETYPIKTPTFAGGLFSISRDYFEHIGSYDEEM
EIWGGENIEMSFRVWQCGGQLEIMPCSVVGHVFRSKSPHTFPKGTQVIARNQVRLAEVWMDEYK
EIFYRRNTDAAKIVKQKSFGDLSKRFEIKKRLQCKNFTWYLNTIYPEVYVPDLNPVISGYIKSV
GQPLCLDVGENNQGDKPLILYTCHGLGGNQYFEYSAQREIRHNIQKELCLHATQGVVQLKACVY
KGHRTIAPGEQIWEIRKDQLLYNPLFRMCLSSNGEHPSLVPCDTTDLLQKWIFSQND

hide sequence

RefSeq Acc Id:

XP_006234352 ⟸ XM_006234290

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAHLKRLVKLHIKRHYHRKFWKLGAVIFFFLVVLILMQREVSVQYSKEESKMERNLKNKNKMFD
FMLEAVNNIKDAMPKMQIGAPIKQNIDVPERPCLQGYYTAAELKPVLDRPPQDSNAPGASGKPF
KITHLSPEEQKEKERGETKHCFNAFASDRISLHRDLGPDTRPPECIEQKFKRCPPLPTTSVIIV
FHNEAWSTLLRTVHSVLYSSPAILLKEIILVDDASVDDYLHEKLEEYIKQFSIVKIVRQQERKG
LITARLLGAAVATAETLTFLDAHCECFYGWLEPLLARIAENYTAVVSPDIASIDLNTFEFNKPS
PYGSNHNRGNFDWSLSFGWESLPDHEKQRRKDETYPIKTPTFAGGLFSISRDYFEHIGSYDEEM
EIWGGENIEMSFRVWQCGGQLEIMPCSVVGHVFRSKSPHTFPKGTQVIARNQVRLAEVWMDEYK
EIFYRRNTDAAKIVKQKSFGDLSKRFEIKKRLQCKNFTWYLNTIYPEVYVPDLNPVISGYIKSV
GQPLCLDVGENNQGDKPLILYTCHGLGGNQYFEYSAQREIRHNIQKELCLHATQGVVQLKACVY
KGHRTIAPGEQIWEIRKDQLLYNPLFRMCLSSNGEHPSLVPCDTTDLLQKWIFSQND

hide sequence

Ensembl Acc Id:

ENSRNOP00000007615 ⟸ ENSRNOT00000007615

Ensembl Acc Id:

ENSRNOP00000089927 ⟸ ENSRNOT00000094310

Protein Domains

Ricin B lectin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3T1J4-F1-model_v2	AlphaFold	Q3T1J4	1-633	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692107

Promoter ID:

EPDNEW_R2630

Type:

multiple initiation site

Name:

Galnt3_1

Description:

polypeptide N-acetylgalactosaminyltransferase 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	52,212,403 - 52,212,463	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306443	AgrOrtholog
BioCyc Gene	G2FUF-49550	BioCyc
BioCyc Pathway	PWY-7433 [mucin core 1 and core 2 O-glycosylation]	BioCyc
	PWY-7435 [mucin core 3 and core 4 O-glycosylation]	BioCyc
BioCyc Pathway Image	PWY-7433	BioCyc
	PWY-7435	BioCyc
Ensembl Genes	ENSRNOG00000005727	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007615	ENTREZGENE
	ENSRNOT00000007615.8	UniProtKB/TrEMBL
	ENSRNOT00000094310.2	UniProtKB/TrEMBL
Gene3D-CATH	2.80.10.50	UniProtKB/TrEMBL
	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7929522	IMAGE-MGC_LOAD
InterPro	GalNAc-T	UniProtKB/TrEMBL
	Glyco_trans_2	UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/TrEMBL
	Ricin_B-like_lectins	UniProtKB/TrEMBL
	Ricin_B_lectin	UniProtKB/TrEMBL
KEGG Report	rno:366061	UniProtKB/TrEMBL
MGC_CLONE	MGC:124508	IMAGE-MGC_LOAD
NCBI Gene	366061	ENTREZGENE
PANTHER	N-ACETYLGALACTOSAMINYLTRANSFERASE	UniProtKB/TrEMBL
	POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 3	UniProtKB/TrEMBL
Pfam	Glycos_transf_2	UniProtKB/TrEMBL
	Ricin_B_lectin	UniProtKB/TrEMBL
PhenoGen	Galnt3	PhenoGen
PROSITE	RICIN_B_LECTIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005727	RatGTEx
SMART	RICIN	UniProtKB/TrEMBL
Superfamily-SCOP	RicinB_like	UniProtKB/TrEMBL
	SSF53448	UniProtKB/TrEMBL
UniProt	A0A8I6A8B0_RAT	UniProtKB/TrEMBL
	A6HLX8	ENTREZGENE, UniProtKB/TrEMBL
	F7FMK3	ENTREZGENE, UniProtKB/TrEMBL
	Q3T1J4	ENTREZGENE
	Q58A69	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	Q3T1J4	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-04-30	Galnt3	polypeptide N-acetylgalactosaminyltransferase 3	Galnt3	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-17	Galnt3	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)	Galnt3	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Galnt3	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	Galnt3_predicted	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Galnt3_predicted	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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