Bicra (BRD4 interacting chromatin remodeling complex associated protein) - Rat Genome Database

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Gene: Bicra (BRD4 interacting chromatin remodeling complex associated protein) Rattus norvegicus
Analyze
Symbol: Bicra
Name: BRD4 interacting chromatin remodeling complex associated protein
RGD ID: 1306385
Description: Predicted to enable transcription regulator activator activity. Predicted to be involved in positive regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of SWI/SNF complex. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 12. Orthologous to human BICRA (BRD4 interacting chromatin remodeling complex associated protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BRD4 interacting chromatin remodelling complex associated protein; glioma tumor suppressor candidate region gene 1; Gltscr1; LOC292622
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,790,093 - 85,867,656 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl185,790,093 - 85,864,306 (-)EnsemblGRCr8
mRatBN7.2176,661,897 - 76,736,146 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,661,897 - 76,737,157 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx182,035,899 - 82,060,496 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,599,958 - 90,624,555 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,791,039 - 83,815,618 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0177,869,020 - 77,943,828 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,869,020 - 77,893,509 (-)Ensemblrn6Rnor6.0
Rnor_5.0179,133,679 - 79,211,053 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4176,318,931 - 76,321,319 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera171,152,229 - 71,176,718 (-)NCBICelera
RGSC_v3.1176,392,629 - 76,418,778 (-)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA,ISO)
SWI/SNF complex  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21555454   PMID:29374058  


Genomics

Comparative Map Data
Bicra
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,790,093 - 85,867,656 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl185,790,093 - 85,864,306 (-)EnsemblGRCr8
mRatBN7.2176,661,897 - 76,736,146 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,661,897 - 76,737,157 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx182,035,899 - 82,060,496 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,599,958 - 90,624,555 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,791,039 - 83,815,618 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0177,869,020 - 77,943,828 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,869,020 - 77,893,509 (-)Ensemblrn6Rnor6.0
Rnor_5.0179,133,679 - 79,211,053 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4176,318,931 - 76,321,319 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera171,152,229 - 71,176,718 (-)NCBICelera
RGSC_v3.1176,392,629 - 76,418,778 (-)NCBI
Cytogenetic Map1q21NCBI
BICRA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,608,196 - 47,703,277 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,608,196 - 47,703,277 (+)Ensemblhg38GRCh38
GRCh371948,111,453 - 48,206,534 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,874,031 - 52,898,291 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341952,874,030 - 52,898,291NCBI
Celera1944,917,158 - 45,012,242 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1944,539,001 - 44,633,232 (+)NCBIHuRef
CHM1_11948,113,705 - 48,208,894 (+)NCBICHM1_1
T2T-CHM13v2.01950,439,021 - 50,534,101 (+)NCBIT2T-CHM13v2.0
Bicra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39715,704,596 - 15,785,047 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl715,704,597 - 15,781,846 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38715,970,671 - 16,048,146 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl715,970,672 - 16,047,921 (-)Ensemblmm10GRCm38
MGSCv37716,556,611 - 16,584,844 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36715,129,192 - 15,158,017 (-)NCBIMGSCv36mm8
Celera713,169,953 - 13,197,925 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.67NCBI
Bicra
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555741,465,377 - 1,485,646 (+)Ensembl
ChiLan1.0NW_0049555741,463,656 - 1,484,709 (+)NCBIChiLan1.0ChiLan1.0
BICRA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22053,755,851 - 53,856,662 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11955,625,824 - 55,726,687 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01944,600,696 - 44,697,643 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11953,254,437 - 53,351,847 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1953,323,064 - 53,350,987 (+)EnsemblpanPan2panpan1.1
BICRA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,344,245 - 108,427,133 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,826,216 - 107,908,663 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01108,870,018 - 108,953,510 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1108,869,137 - 108,952,561 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11108,537,676 - 108,620,815 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,182,456 - 108,264,770 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01109,050,449 - 109,134,058 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bicra
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,622,898 - 19,691,985 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366641,287,475 - 1,309,232 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366641,241,048 - 1,310,114 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICRA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,339,192 - 53,415,937 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1653,339,166 - 53,416,834 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2648,921,977 - 48,946,945 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BICRA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1640,927,931 - 41,024,080 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl640,990,615 - 41,023,222 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607320,671,895 - 20,776,984 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bicra
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248326,172,642 - 6,195,243 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248326,171,923 - 6,237,198 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Bicra
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12173,039,857 - 173,113,528 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bicra
282 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:312
Count of miRNA genes:188
Interacting mature miRNAs:213
Transcripts:ENSRNOT00000015059
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
BF413098  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2176,672,678 - 76,672,883 (+)MAPPERmRatBN7.2
Rnor_6.0177,879,800 - 77,880,004NCBIRnor6.0
Rnor_5.0179,144,459 - 79,144,663UniSTSRnor5.0
RGSC_v3.4176,324,514 - 76,324,718UniSTSRGSC3.4
Celera171,163,009 - 71,163,213UniSTS
RH 3.4 Map1785.9UniSTS
Cytogenetic Map1q21UniSTS
AI230809  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2176,673,231 - 76,673,441 (+)MAPPERmRatBN7.2
Rnor_6.0177,880,353 - 77,880,562NCBIRnor6.0
Rnor_5.0179,145,012 - 79,145,221UniSTSRnor5.0
RGSC_v3.4176,325,067 - 76,325,276UniSTSRGSC3.4
Celera171,163,562 - 71,163,771UniSTS
RH 3.4 Map1786.6UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000015059   ⟹   ENSRNOP00000015059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl185,790,093 - 85,864,306 (-)Ensembl
mRatBN7.2 Ensembl176,661,897 - 76,737,157 (-)Ensembl
Rnor_6.0 Ensembl177,869,020 - 77,893,509 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102879   ⟹   ENSRNOP00000084339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl185,790,093 - 85,864,185 (-)Ensembl
mRatBN7.2 Ensembl176,661,897 - 76,737,157 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108489   ⟹   ENSRNOP00000086008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl185,790,093 - 85,864,185 (-)Ensembl
mRatBN7.2 Ensembl176,661,897 - 76,737,157 (-)Ensembl
RefSeq Acc Id: NM_001106226   ⟹   NP_001099696
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,790,093 - 85,814,582 (-)NCBI
mRatBN7.2176,661,897 - 76,686,387 (-)NCBI
Rnor_6.0177,869,020 - 77,893,509 (-)NCBI
Rnor_5.0179,133,679 - 79,211,053 (-)NCBI
RGSC_v3.4176,318,931 - 76,321,319 (-)RGD
Celera171,152,229 - 71,176,718 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006228343   ⟹   XP_006228405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,790,093 - 85,867,656 (-)NCBI
mRatBN7.2176,661,897 - 76,736,145 (-)NCBI
Rnor_6.0177,869,020 - 77,943,827 (-)NCBI
Rnor_5.0179,133,679 - 79,211,053 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006228344   ⟹   XP_006228406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,790,093 - 85,867,656 (-)NCBI
mRatBN7.2176,661,897 - 76,736,145 (-)NCBI
Rnor_6.0177,869,020 - 77,943,828 (-)NCBI
Rnor_5.0179,133,679 - 79,211,053 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006228345   ⟹   XP_006228407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,790,093 - 85,867,656 (-)NCBI
mRatBN7.2176,661,897 - 76,736,146 (-)NCBI
Rnor_6.0177,869,020 - 77,943,828 (-)NCBI
Rnor_5.0179,133,679 - 79,211,053 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001099696   ⟸   NM_001106226
- UniProtKB: D3ZQW8 (UniProtKB/TrEMBL),   A6J889 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228406   ⟸   XM_006228344
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A4I1 (UniProtKB/TrEMBL),   A6J889 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228407   ⟸   XM_006228345
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZXV5 (UniProtKB/TrEMBL),   A6J889 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228405   ⟸   XM_006228343
- Peptide Label: isoform X1
- UniProtKB: D3ZQW8 (UniProtKB/TrEMBL),   A6J889 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015059   ⟸   ENSRNOT00000015059
Ensembl Acc Id: ENSRNOP00000086008   ⟸   ENSRNOT00000108489
Ensembl Acc Id: ENSRNOP00000084339   ⟸   ENSRNOT00000102879
Protein Domains
GLTSCR protein conserved

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQW8-F1-model_v2 AlphaFold D3ZQW8 1-1576 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306385 AgrOrtholog
BioCyc Gene G2FUF-60628 BioCyc
Ensembl Genes ENSRNOG00000011262 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015059 ENTREZGENE
  ENSRNOT00000015059.8 UniProtKB/TrEMBL
  ENSRNOT00000102879 ENTREZGENE
  ENSRNOT00000102879.2 UniProtKB/TrEMBL
  ENSRNOT00000108489 ENTREZGENE
  ENSRNOT00000108489.2 UniProtKB/TrEMBL
InterPro Chromatin_remod/trans_coact UniProtKB/TrEMBL
  GSCR1_dom UniProtKB/TrEMBL
KEGG Report rno:292622 UniProtKB/TrEMBL
NCBI Gene 292622 ENTREZGENE
PANTHER GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1 UniProtKB/TrEMBL
  PTHR15572:SF1 UniProtKB/TrEMBL
Pfam GLTSCR1 UniProtKB/TrEMBL
PhenoGen Bicra PhenoGen
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011262 RatGTEx
UniProt A0A8I5ZXV5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A4I1 ENTREZGENE, UniProtKB/TrEMBL
  A6J889 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQW8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-04-26 Bicra  BRD4 interacting chromatin remodeling complex associated protein  Bicra  BRD4 interacting chromatin remodelling complex associated protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-03-29 Bicra  BRD4 interacting chromatin remodelling complex associated protein  Gltscr1  glioma tumor suppressor candidate region gene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Gltscr1  glioma tumor suppressor candidate region gene 1   Gltscr1_predicted  glioma tumor suppressor candidate region gene 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Gltscr1_predicted  glioma tumor suppressor candidate region gene 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED