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Gene: Agtpbp1 (ATP/GTP binding carboxypeptidase 1) Rattus norvegicus

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Symbol:

Agtpbp1

Name:

ATP/GTP binding carboxypeptidase 1

RGD ID:

1306307

Description:

Predicted to enable metallocarboxypeptidase activity and tubulin binding activity. Predicted to be involved in eye photoreceptor cell differentiation; mitochondrion organization; and olfactory bulb development. Predicted to act upstream of or within several processes, including adult walking behavior; axonal transport of mitochondrion; and central nervous system neuron differentiation. Predicted to be located in cytosol and mitochondrion. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Orthologous to human AGTPBP1 (ATP/GTP binding carboxypeptidase 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ATP/GTP binding protein 1; cytosolic carboxypeptidase 1; LOC290986

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AGTPBP1 (ATP/GTP binding carboxypeptidase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Agtpbp1 (ATP/GTP binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Agtpbp1 (ATP/GTP binding carboxypeptidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AGTPBP1 (ATP/GTP binding carboxypeptidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AGTPBP1 (ATP/GTP binding carboxypeptidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Agtpbp1 (ATP/GTP binding carboxypeptidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AGTPBP1 (ATP/GTP binding carboxypeptidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AGTPBP1 (ATP/GTP binding carboxypeptidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Agtpbp1 (ATP/GTP binding carboxypeptidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Agtpbp1 (ATP/GTP binding carboxypeptidase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	THAP6 (THAP domain containing 6)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	AGTPBP1 (ATP/GTP binding carboxypeptidase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Agtpbp1 (ATP/GTP binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	agtpbp1 (ATP/GTP binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ccpp-1	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ccpp-1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	agtpbp1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	5,092,108 - 5,244,414 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	5,126,146 - 5,244,420 (+)	Ensembl				GRCr8
mRatBN7.2	17	5,120,540 - 5,238,874 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	5,120,609 - 5,238,869 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	5,153,873 - 5,264,101 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	6,694,971 - 6,799,992 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	5,150,307 - 5,260,529 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	5,510,009 - 5,614,416 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	5,511,385 - 5,614,435 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	7,722,385 - 7,837,764 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	11,040,339 - 11,155,923 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	5,254,268 - 5,358,824 (+)	NCBI		Celera
RGSC_v3.1	17	11,063,063 - 11,155,645 (+)	NCBI
Cytogenetic Map	17	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Childhood-Onset Neurodegeneration with Cerebellar Atrophy (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

Nerve Degeneration (ISO)

NEURODEVELOPMENTAL DISORDER WITH CEREBELLAR ATROPHY AND WITH OR WITHOUT SEIZURES (ISO)

retinitis pigmentosa (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2-methoxyethanol (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

ethanol (EXP,ISO)

fenvalerate (EXP)

fipronil (EXP)

folic acid (ISO)

genistein (ISO)

glycidol (EXP)

L-methionine (ISO)

lead diacetate (EXP)

lead(0) (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

methylphenidate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (EXP)

naled (ISO)

nickel sulfate (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

pirinixic acid (ISO)

quercetin (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult walking behavior (ISO)

anterograde axonal transport of mitochondrion (ISO)

axonal transport (ISO)

C-terminal protein deglutamylation (ISO)

central nervous system neuron development (ISO)

cerebellar Purkinje cell differentiation (ISO)

cerebellar Purkinje cell layer development (ISO)

cerebellum development (ISO)

eye photoreceptor cell differentiation (ISO)

mitochondrion organization (ISO)

negative regulation of cell population proliferation (ISO)

neuromuscular process (ISO)

olfactory bulb development (ISO)

positive regulation of ubiquitin-dependent protein catabolic process (ISO)

protein deglutamylation (ISO)

protein side chain deglutamylation (ISO)

proteolysis (IEA)

retina development in camera-type eye (ISO)

retrograde axonal transport of mitochondrion (ISO)

Cellular Component

axon (IEA)

axon cytoplasm (IEA)

cytoplasm (IBA,ISO)

cytosol (IEA,ISO)

microtubule cytoskeleton (IBA)

mitochondrion (IEA,ISO)

nucleoplasm (ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

carboxypeptidase activity (IEA)

hydrolase activity (IEA)

metal ion binding (IEA)

metallocarboxypeptidase activity (IBA,IEA,ISO)

metallopeptidase activity (IEA)

peptidase activity (IEA)

protein binding (ISO)

tubulin binding (IBA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:23085998	PMID:30420557

Genomics

Comparative Map Data

Agtpbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	5,092,108 - 5,244,414 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	5,126,146 - 5,244,420 (+)	Ensembl				GRCr8
mRatBN7.2	17	5,120,540 - 5,238,874 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	5,120,609 - 5,238,869 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	5,153,873 - 5,264,101 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	6,694,971 - 6,799,992 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	5,150,307 - 5,260,529 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	5,510,009 - 5,614,416 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	5,511,385 - 5,614,435 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	7,722,385 - 7,837,764 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	11,040,339 - 11,155,923 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	5,254,268 - 5,358,824 (+)	NCBI		Celera
RGSC_v3.1	17	11,063,063 - 11,155,645 (+)	NCBI
Cytogenetic Map	17	p14	NCBI

AGTPBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	85,546,539 - 85,805,483 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	85,546,539 - 85,742,144 (-)	Ensembl			hg38	GRCh38
GRCh37	9	88,161,454 - 88,356,944 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	87,351,275 - 87,546,709 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	85,391,008 - 85,586,443	NCBI
Celera	9	58,731,693 - 58,927,167 (-)	NCBI		Celera
Cytogenetic Map	9	q21.33	NCBI
HuRef	9	57,985,670 - 58,181,366 (-)	NCBI		HuRef
CHM1_1	9	88,308,168 - 88,503,654 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	97,697,026 - 97,955,976 (-)	NCBI		T2T-CHM13v2.0

Agtpbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	59,597,348 - 59,705,184 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	59,593,556 - 59,733,041 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	59,449,534 - 59,557,370 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	59,445,742 - 59,585,227 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	59,550,896 - 59,658,680 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	59,459,518 - 59,566,909 (-)	NCBI		MGSCv36	mm8
Celera	13	60,505,890 - 60,600,548 (-)	NCBI		Celera
Cytogenetic Map	13	B2	NCBI
cM Map	13	37.0	NCBI

Agtpbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	1,628,913 - 1,818,454 (+)	Ensembl
ChiLan1.0	NW_004955432	1,628,966 - 1,816,373 (+)	NCBI	ChiLan1.0	ChiLan1.0

AGTPBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	84,681,031 - 84,876,912 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	84,686,971 - 84,882,852 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	39,161,182 - 39,357,043 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	84,871,571 - 85,049,056 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	84,871,450 - 85,037,897 (-)	Ensembl			panPan2	panpan1.1

AGTPBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	73,853,491 - 74,030,075 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	73,887,934 - 74,107,312 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	74,616,116 - 74,795,461 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	74,158,469 - 74,338,565 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	74,158,416 - 74,336,496 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	73,967,595 - 74,147,352 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	73,736,759 - 73,916,152 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	74,439,370 - 74,619,422 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Agtpbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	120,497,104 - 120,673,188 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936680	1,065,937 - 1,240,875 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936680	1,065,375 - 1,240,909 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AGTPBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	29,440,145 - 29,590,454 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	29,440,150 - 29,590,457 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	33,515,965 - 33,666,698 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AGTPBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	96,342,193 - 96,534,981 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	96,342,759 - 96,534,800 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	84,694,874 - 84,887,676 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Agtpbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624809	9,119,951 - 9,339,604 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624809	9,119,412 - 9,321,226 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Agtpbp1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	78,580,921 - 78,699,019 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Agtpbp1
1082 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	40
Interacting mature miRNAs:	49
Transcripts:	ENSRNOT00000025381
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	1	36045694	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	43999106	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4360057	27233623	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)	17	1	21499218	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2120843	42054133	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4733534	49733534	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	38037084	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31706603	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4733534	49733534	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	43999106	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4360057	27233623	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	43999106	Rat
1641902	Colcr7	Colorectal carcinoma resistance QTL 7	3.35	0.0044	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	17	2120843	22087569	Rat
1549900	Iddm20	Insulin dependent diabetes mellitus QTL 20	3.7		pancreas integrity trait (VT:0010560)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	17	1	22181410	Rat
9590316	Scort21	Serum corticosterone level QTL 21	4.75	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	1	22877318	Rat

Markers in Region

RH129402

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	5,238,648 - 5,238,838 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	5,614,196 - 5,614,385	NCBI	Rnor6.0
Rnor_5.0	17	7,837,542 - 7,837,731	UniSTS	Rnor5.0
RGSC_v3.4	17	11,155,703 - 11,155,892	UniSTS	RGSC3.4
Celera	17	5,358,604 - 5,358,793	UniSTS
RH 3.4 Map	17	73.7	UniSTS
Cytogenetic Map	17	p14	UniSTS

RH129762

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	5,238,637 - 5,238,838 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	5,614,185 - 5,614,385	NCBI	Rnor6.0
Rnor_5.0	17	7,837,531 - 7,837,731	UniSTS	Rnor5.0
RGSC_v3.4	17	11,155,692 - 11,155,892	UniSTS	RGSC3.4
Celera	17	5,358,593 - 5,358,793	UniSTS
RH 3.4 Map	17	73.7	UniSTS
Cytogenetic Map	17	p14	UniSTS

RH143444

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	5,185,545 - 5,185,679 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	5,563,940 - 5,564,073	NCBI	Rnor6.0
Rnor_5.0	17	7,787,457 - 7,787,590	UniSTS	Rnor5.0
RGSC_v3.4	17	11,102,557 - 11,102,690	UniSTS	RGSC3.4
Celera	17	5,305,354 - 5,305,487	UniSTS
RH 3.4 Map	17	73.7	UniSTS
Cytogenetic Map	17	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010058817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025381 ⟹ ENSRNOP00000025382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	5,126,146 - 5,244,415 (+)	Ensembl
mRatBN7.2 Ensembl	17	5,133,698 - 5,238,869 (+)	Ensembl
Rnor_6.0 Ensembl	17	5,511,385 - 5,614,416 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091370 ⟹ ENSRNOP00000071198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	5,126,151 - 5,244,076 (+)	Ensembl
mRatBN7.2 Ensembl	17	5,120,609 - 5,233,767 (+)	Ensembl
Rnor_6.0 Ensembl	17	5,513,930 - 5,614,435 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000146723 ⟹ ENSRNOP00000110575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	5,126,427 - 5,239,312 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000147265 ⟹ ENSRNOP00000098927

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	5,126,427 - 5,244,418 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000166040 ⟹ ENSRNOP00000101042

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	5,126,427 - 5,244,420 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168062 ⟹ ENSRNOP00000099619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	5,126,146 - 5,244,415 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000170055 ⟹ ENSRNOP00000109333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	5,126,183 - 5,244,074 (+)	Ensembl

RefSeq Acc Id:

NM_001106100 ⟹ NP_001099570

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,139,253 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,133,698 - 5,238,869 (+)	NCBI
Rnor_6.0	17	5,511,385 - 5,614,416 (+)	NCBI
Rnor_5.0	17	7,722,385 - 7,837,764 (+)	NCBI
RGSC_v3.4	17	11,040,339 - 11,155,923 (+)	RGD
Celera	17	5,254,268 - 5,358,824 (+)	RGD

Sequence:

show sequence

GGTGTGGCAAAGGAGTGGGATTGCAGAAAGCATCATGGAATCGTTCTACCCAAGACAGAAGTAA
CAAGACGTTATGGCGGTGAGAAGAAAAGGTGTGTTTTCGTGTGGAAATACACGTCTACCAGTTT
GGCGCTACTATGTAATCAGTGGTCACCTTGTCGTGGAAAGCTGTGGTTGGCTTGAGAATTAATG
AGGCATAGCAGCACTGTCTCAGAAGAAATCGAAGTACTGATTGTAGGAGCAGCCTTTCATAGGA
GTGATAAAACCATCACGAAAAAACAACTTAAGGGAGAAGATTATCTGCAATGCTGGAATGAAGT
AACTCAAGATGAGCAAGCTAAAAGTGGTAGGAGAGAAAAGCCTTACCAATAGTTCTCGGGTTGT
GGGGCTCTTGGCTCAGCTGGAGAAGATCAATACGGATTCCACAGAGTCAGACACTGCCAGACAT
GTCACATCCAAAATTCTTCATTTGGCTCAAAGTCAAGAAAAAACAAGGAGGGAAATGACAACCA
AAGGTTCTACAGGCATGGAAGTTCTGTTGTCAACATTGGAGAACACGAAAGATCTTCAGACTGT
ACTTAATATCCTGAGCATTCTCATCGAGCTGGTGTCCTCCGGTGGAGGCCGAAGAGCGAGTTTC
TTAGTTGCCAAAGGTGGTTCACAGATTCTGTTGCAACTGCTCATGAACGCCAGCAAAGACTCTC
CCCCACACGAGGAGGTGATGGTGCAGACTCACTCCATTCTTGCCAAGATTGGACCAAAAGATAA
AAAATTTGGAGTGAAAGCCAGAGTAAATGGGGCCCTGAATATAACTCTGAACCTGGTCAAGCAG
CACTTTCAGAACTACCGCCTGGTTCTGCCTTGTCTTCAGCTGTTACGAGTGTATTCTACCAACT
CTGTGAACTCAGTATCTTTAGGTAAGAATGGAGTTGTGGAGCTGATGTTTAAGATCATCGGACC
ATTCAGTAAGAAGAATTCGGGTCTCATGAAGGTTGCTTTAGACACTCTTGCTGCATTGCTAAAA
TCAAAGACAAATGCCAGGCGTGCCGTAGACAGAGGCTATGTTCAAGTGCTTTTAACCATTTATG
TAGATTGGCATCGACACGATAACCGGCACAGAAACATGCTCATTCGGAAGGGGATTCTACAGAG
CTTAAAAAGTGTCACGAACATCAAATTGGGAAGAAAAGCATTTATTGATGCAAATGGGATGAGA
ATTCTGTATAACACCTCACAAGAGTGCTTGGCGGTCAGGACTCTGGACCCTCTTGTCAACACAT
CCAGTCTGATAATGAGGAAATGTTTCCCCAAAAACCGCCTTCCACTCCCCACCATTAAAAGTTC
TTTCCACTTCCAGTTGCCAATTATCCCTGTGACTGGACCTGTGGCCCAGCTCTACAACCTGCCG
CCCGAAGTGGACGACGTGGTGGACGAGAGTGACGACAACGATGACATTGATTTAGAAGCTGAAA
ATGAAGTCGAGAATGAAGATGACCTAGATCAAAGTTTTAAGAATGATGATATTGAAACAGATAT
TAATAAATTAAGACCCCAGCAAGTACCAGGACGAACAATAGAAGAACTAAAAATGTATGAGCAC
CTTTTCCCTGAGCTTGTTGATGATTTTCAGGACTATGAATTAATCGCTAAAGAACCCAAACCTT
TTGTGTTTGAGGGGAAAGTTCGGGGCCCGATTGTAGTTCCCACAGCTGGAGAGGAAGTGCCTGG
GAATCCAGGTAACGTAAGGAAAGGAGCTGCAGTGAAGGAGAAAGCGAGTCCTAAAGGAGAGGAA
GTCAAGGAAGATGCCAAGGGCCATGACAAAACACCGCCGTGGCAGCTGGGTGGCCAGAACAGAG
CGGCCGCTTCAGCCCACAGCTCCAACAACGATCTTGTGAAGGCCTTAGACCGAATCACACTGCA
GAGTACCCCTTCACAAGTAGCCGCGGGCTTGACTGCAGGAATGAGGAAGGACTACGGCCTCCCT
CTCACTGTCCTCTCATGCACGAAAGCGTGTCCTCACGTGGCTAAGTGCACAAGTGCCCTTTTCG
AAGGGCGGACAGTACATCTTGGTAAACTGTGTTGTACTGGAGTTGAAACGGAAGATGATGAAGA
CTTTGAGTCCCACTCATCAGCAGAGCAGGTCTCCTCTGTTGAAGCCTCTGATGGACCACCAACA
CTGCATGACCCAGACCTCTACATCGAGATTGTGAAAAATACAAAGTCTGTTCCCGAGTACTCAG
AGGTGGCCTATCCTGATTATTTTGGACACATTCCACCTCCCTTCAAAGAGCCTATTTTAGAAAG
GCCTTATGGTGTACAAAGGACAAAAATTGCCCAAGATATCGAGAGGCTGATACACCAGAATGAT
ATCATTGACCGGGTGGTGTATGACTTAGATAACCCTAACTATACCACTCCAGAAGAAGGAGATA
TTTTGAAGTTTAACTCAAAATTTGAATCTGGGAATCTGCGCAAAGTAATTCAAATTAGAAAAAG
CGAGTATGACCTCATTCTGAACTCTGACATAAACAGTAACCATTACCATCAGTGGTTCTACTTT
GAAGTCAGTGGGATGCGGCCGGGTGTGGCATACAGGTTCAACATCATCAACTGTGAGAAGTCCA
ACAGCCAGTTTAACTACGGTATGCAGCCACTTATGTATTCAGTTCAGGAAGCACTAAATGCCAG
GCCGTGGTGGATCCGTATGGGTACTGACATTTGTTACTACAAAAATCACTTCTCGAGAAGTTCC
GTGGCTGCGGGTGGACAGAAGGGGAAGTCCTACTACACGATCACCTTCACCGTGGTCTTCCCGC
ATAAAGATGACGTGTGCTACTTTGCCTATCACTACCCATACACATACTCTACTCTGCAGATGCA
TCTTCAAAAATTGGAGTCAGCGCACAATCCTCAGCAAATCTACTTTCGAAAAGATGTGTTGTGT
GAGACCTTGTCTGGGAACAGCTGTCCTTTGGTGACCATAACAGCAATGCCAGAGTCCAGTTACT
ATGAGCATATCTGTCAATTCAGAACTCGCCCTTACATTTTCTTGTCTGCTCGGGTGCATCCTGG
AGAAACCAATGCAAGCTGGGTCATGAAAGGAACGCTGGAGTACCTCATGAGCAATAGCCCGACC
GCCCAGAGCTTGCGGGAGGCTTACATTTTTAAAATTGTTCCCATGCTCAATCCAGACGGTGTCA
TCAATGGAAATCACCGCTGCTCCTTAAGTGGAGAGGATTTGAACAGACAGTGGCAAAGTCCAAA
CCCAGAGTTACACCCCACGATTTACCATGCGAAGGGGCTACTCCAGTACCTGGCTGCAGTGAAG
CGCTTACCTCTGGTTTACTGTGATTACCATGGCCACTCTCGGAAAAAGAATGTGTTCATGTATG
GCTGCAGCATCAAAGAGACAGTGTGGCACACCCATGACAACGCGGCCTCCTGCGATGTTGTGGA
AGACATGGGATACAGGACTTTGCCTAAGATCCTGAGCCACATCGCTCCGGCCTTCTGCATGAGC
AGCTGTAGCTTTGTGGTGGAAAAATCCAAAGAGTCCACAGCTCGGGTTGTTGTGTGGCGGGAAA
TTGGAGTTCAAAGGAGCTATACCATGGAGAGTACTTTATGTGGCTGCGATCAGGGTAGATACAA
GGGTTTACAGATTGGGACTCGAGAACTGGAAGAAATGGGAGCAAAATTTTGTGTTGGTTTATTG
CGTTTGAAAAGACTGACTTCTCCATTGGAGTACAATCTACCCTCCAACCTGCTTGACTTTGAAA
ATGACTTAATTGAATCAAGCTGTAAAGTAACTAGCCCCACTACTTACGTTTTGGATGAAGATGA
ACCTCGGTTCCTTGAAGAAGTTGATTACAGTGCAGAAAGCAATGACGAGTTAGAGGTTGAATTA
GCGGAGAATACAGGCGATTATGAGCCTTCTGCCCAAGACGAAGCCCTTTCCGACTCTGAGGTAT
CAAGAACACACCCTATTTGAACTTTCTTCCACCTTTGTTAATTGCCAAGAAGAAATGAAATGTC
TTGGTTTTCGTTGCACAGGAAGTATGAGAGGGACAAGCATTCAGACAGCTGACTCAAGACGAAA
AGGACCTTGGGCCTGTTTGGTTTCAAGACAATAAATATATTATTAATTGATATTATTGGCATTT
GTTTTATTTTAGATATTCAATGTACTTTATATAACATTGAATTATCAGATGATAGAAGTATCAT
TGCATGAATTTTATCTCCTGTGGCACCTGCATCAAGCAGACAAACTCAGTGTGTCCGAGTAAAA
ATCTAAATTATATGGAGTGAAAATCGTTCTCTACATGGATTTCTCCGAATGTGTTTGTGTGGAG
GTGGGGAGATACTCAAGCTAACTGCTCTTCAGAAGCATGTGAACTGTGTATGGTGGCTGAACTA
ACCCAAAATTTGCCTCGAATCCATCCCATTCTACATTTATCAAGTTAAATAAAACTGTATCAGA
CTCTG

hide sequence

RefSeq Acc Id:

XM_039095446 ⟹ XP_038951374

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,101 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,542 - 5,238,535 (+)	NCBI

RefSeq Acc Id:

XM_039095447 ⟹ XP_038951375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,548 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,993 - 5,238,535 (+)	NCBI

RefSeq Acc Id:

XM_039095448 ⟹ XP_038951376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,342 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,779 - 5,238,535 (+)	NCBI

RefSeq Acc Id:

XM_039095449 ⟹ XP_038951377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,134,263 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,134,419 - 5,238,874 (+)	NCBI

RefSeq Acc Id:

XM_039095450 ⟹ XP_038951378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,662 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,991 - 5,238,874 (+)	NCBI

RefSeq Acc Id:

XM_039095451 ⟹ XP_038951379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,101 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,542 - 5,238,871 (+)	NCBI

RefSeq Acc Id:

XM_039095452 ⟹ XP_038951380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,548 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,993 - 5,238,874 (+)	NCBI

RefSeq Acc Id:

XM_039095454 ⟹ XP_038951382

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,094 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,540 - 5,238,871 (+)	NCBI

RefSeq Acc Id:

XM_039095455 ⟹ XP_038951383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,561 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,991 - 5,238,874 (+)	NCBI

RefSeq Acc Id:

XM_039095456 ⟹ XP_038951384

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,285 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,735 - 5,238,874 (+)	NCBI

RefSeq Acc Id:

XM_039095457 ⟹ XP_038951385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,101 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,632 - 5,238,874 (+)	NCBI

RefSeq Acc Id:

XM_039095460 ⟹ XP_038951388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,101 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,632 - 5,238,874 (+)	NCBI

RefSeq Acc Id:

XM_039095461 ⟹ XP_038951389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,101 - 5,240,524 (+)	NCBI
mRatBN7.2	17	5,120,632 - 5,235,829 (+)	NCBI

RefSeq Acc Id:

XM_039095462 ⟹ XP_038951390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,092 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,550 - 5,238,871 (+)	NCBI

RefSeq Acc Id:

XM_039095463 ⟹ XP_038951391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,243 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,121,004 - 5,238,871 (+)	NCBI

RefSeq Acc Id:

XM_039095464 ⟹ XP_038951392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,101 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,632 - 5,238,874 (+)	NCBI

RefSeq Acc Id:

XM_039095465 ⟹ XP_038951393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,101 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,120,632 - 5,238,874 (+)	NCBI

RefSeq Acc Id:

XM_039095466 ⟹ XP_038951394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,164,589 - 5,244,414 (+)	NCBI
mRatBN7.2	17	5,159,034 - 5,238,874 (+)	NCBI

RefSeq Acc Id:

XM_063276135 ⟹ XP_063132205

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,138,119 - 5,244,414 (+)	NCBI

RefSeq Acc Id:

XM_063276136 ⟹ XP_063132206

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,092,108 - 5,244,414 (+)	NCBI

RefSeq Acc Id:

XM_063276137 ⟹ XP_063132207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,101 - 5,244,414 (+)	NCBI

RefSeq Acc Id:

XM_063276138 ⟹ XP_063132208

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,548 - 5,244,414 (+)	NCBI

RefSeq Acc Id:

XM_063276139 ⟹ XP_063132209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,134,263 - 5,244,414 (+)	NCBI

RefSeq Acc Id:

XM_063276140 ⟹ XP_063132210

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,138,119 - 5,244,414 (+)	NCBI

RefSeq Acc Id:

XM_063276141 ⟹ XP_063132211

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,092 - 5,244,414 (+)	NCBI

RefSeq Acc Id:

XM_063276142 ⟹ XP_063132212

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,170,330 - 5,244,414 (+)	NCBI

RefSeq Acc Id:

XR_010058817

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	5,126,101 - 5,217,881 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099570	(Get FASTA)	NCBI Sequence Viewer
	NP_001430798	(Get FASTA)	NCBI Sequence Viewer
	NP_001430799	(Get FASTA)	NCBI Sequence Viewer
	NP_001430800	(Get FASTA)	NCBI Sequence Viewer
	NP_001430801	(Get FASTA)	NCBI Sequence Viewer
	NP_001430802	(Get FASTA)	NCBI Sequence Viewer
	NP_001430803	(Get FASTA)	NCBI Sequence Viewer
	NP_001430804	(Get FASTA)	NCBI Sequence Viewer
	NP_001430805	(Get FASTA)	NCBI Sequence Viewer
	NP_001430806	(Get FASTA)	NCBI Sequence Viewer
	NP_001430807	(Get FASTA)	NCBI Sequence Viewer
	NP_001430808	(Get FASTA)	NCBI Sequence Viewer
	XP_038951374	(Get FASTA)	NCBI Sequence Viewer
	XP_038951375	(Get FASTA)	NCBI Sequence Viewer
	XP_038951376	(Get FASTA)	NCBI Sequence Viewer
	XP_038951377	(Get FASTA)	NCBI Sequence Viewer
	XP_038951378	(Get FASTA)	NCBI Sequence Viewer
	XP_038951379	(Get FASTA)	NCBI Sequence Viewer
	XP_038951380	(Get FASTA)	NCBI Sequence Viewer
	XP_038951382	(Get FASTA)	NCBI Sequence Viewer
	XP_038951383	(Get FASTA)	NCBI Sequence Viewer
	XP_038951384	(Get FASTA)	NCBI Sequence Viewer
	XP_038951385	(Get FASTA)	NCBI Sequence Viewer
	XP_038951388	(Get FASTA)	NCBI Sequence Viewer
	XP_038951389	(Get FASTA)	NCBI Sequence Viewer
	XP_038951390	(Get FASTA)	NCBI Sequence Viewer
	XP_038951391	(Get FASTA)	NCBI Sequence Viewer
	XP_038951392	(Get FASTA)	NCBI Sequence Viewer
	XP_038951393	(Get FASTA)	NCBI Sequence Viewer
	XP_038951394	(Get FASTA)	NCBI Sequence Viewer
	XP_063132205	(Get FASTA)	NCBI Sequence Viewer
	XP_063132206	(Get FASTA)	NCBI Sequence Viewer
	XP_063132207	(Get FASTA)	NCBI Sequence Viewer
	XP_063132208	(Get FASTA)	NCBI Sequence Viewer
	XP_063132209	(Get FASTA)	NCBI Sequence Viewer
	XP_063132210	(Get FASTA)	NCBI Sequence Viewer
	XP_063132211	(Get FASTA)	NCBI Sequence Viewer
	XP_063132212	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58658	(Get FASTA)	NCBI Sequence Viewer
	EDL93892	(Get FASTA)	NCBI Sequence Viewer
	EDL93893	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025382
	ENSRNOP00000025382.6
	ENSRNOP00000071198
	ENSRNOP00000071198.3
	ENSRNOP00000098927
	ENSRNOP00000098927.1
	ENSRNOP00000099619
	ENSRNOP00000099619.1
	ENSRNOP00000101042
	ENSRNOP00000101042.1
	ENSRNOP00000109333.1
	ENSRNOP00000110575
	ENSRNOP00000110575.1

RefSeq Acc Id:

NP_001099570 ⟸ NM_001106100

- UniProtKB:

G3V8G1 (UniProtKB/TrEMBL), A6KAI4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSKLKVVGEKSLTNSSRVVGLLAQLEKINTDSTESDTARHVTSKILHLAQSQEKTRREMTTKGS
TGMEVLLSTLENTKDLQTVLNILSILIELVSSGGGRRASFLVAKGGSQILLQLLMNASKDSPPH
EEVMVQTHSILAKIGPKDKKFGVKARVNGALNITLNLVKQHFQNYRLVLPCLQLLRVYSTNSVN
SVSLGKNGVVELMFKIIGPFSKKNSGLMKVALDTLAALLKSKTNARRAVDRGYVQVLLTIYVDW
HRHDNRHRNMLIRKGILQSLKSVTNIKLGRKAFIDANGMRILYNTSQECLAVRTLDPLVNTSSL
IMRKCFPKNRLPLPTIKSSFHFQLPIIPVTGPVAQLYNLPPEVDDVVDESDDNDDIDLEAENEV
ENEDDLDQSFKNDDIETDINKLRPQQVPGRTIEELKMYEHLFPELVDDFQDYELIAKEPKPFVF
EGKVRGPIVVPTAGEEVPGNPGNVRKGAAVKEKASPKGEEVKEDAKGHDKTPPWQLGGQNRAAA
SAHSSNNDLVKALDRITLQSTPSQVAAGLTAGMRKDYGLPLTVLSCTKACPHVAKCTSALFEGR
TVHLGKLCCTGVETEDDEDFESHSSAEQVSSVEASDGPPTLHDPDLYIEIVKNTKSVPEYSEVA
YPDYFGHIPPPFKEPILERPYGVQRTKIAQDIERLIHQNDIIDRVVYDLDNPNYTTPEEGDILK
FNSKFESGNLRKVIQIRKSEYDLILNSDINSNHYHQWFYFEVSGMRPGVAYRFNIINCEKSNSQ
FNYGMQPLMYSVQEALNARPWWIRMGTDICYYKNHFSRSSVAAGGQKGKSYYTITFTVVFPHKD
DVCYFAYHYPYTYSTLQMHLQKLESAHNPQQIYFRKDVLCETLSGNSCPLVTITAMPESSYYEH
ICQFRTRPYIFLSARVHPGETNASWVMKGTLEYLMSNSPTAQSLREAYIFKIVPMLNPDGVING
NHRCSLSGEDLNRQWQSPNPELHPTIYHAKGLLQYLAAVKRLPLVYCDYHGHSRKKNVFMYGCS
IKETVWHTHDNAASCDVVEDMGYRTLPKILSHIAPAFCMSSCSFVVEKSKESTARVVVWREIGV
QRSYTMESTLCGCDQGRYKGLQIGTRELEEMGAKFCVGLLRLKRLTSPLEYNLPSNLLDFENDL
IESSCKVTSPTTYVLDEDEPRFLEEVDYSAESNDELEVELAENTGDYEPSAQDEALSDSEVSRT
HPI

hide sequence

Ensembl Acc Id:

ENSRNOP00000071198 ⟸ ENSRNOT00000091370

Ensembl Acc Id:

ENSRNOP00000025382 ⟸ ENSRNOT00000025381

RefSeq Acc Id:	XP_038951382 ⟸ XM_039095454
- Peptide Label:	isoform X1
- UniProtKB:	G3V8G1 (UniProtKB/TrEMBL), A6KAI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951379 ⟸ XM_039095451
- Peptide Label:	isoform X1
- UniProtKB:	G3V8G1 (UniProtKB/TrEMBL), A6KAI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951374 ⟸ XM_039095446
- Peptide Label:	isoform X1
- UniProtKB:	G3V8G1 (UniProtKB/TrEMBL), A6KAI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951390 ⟸ XM_039095462
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038951385 ⟸ XM_039095457
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038951392 ⟸ XM_039095464
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038951393 ⟸ XM_039095465
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038951388 ⟸ XM_039095460
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038951389 ⟸ XM_039095461
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JZV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951384 ⟸ XM_039095456
- Peptide Label:	isoform X1
- UniProtKB:	G3V8G1 (UniProtKB/TrEMBL), A6KAI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951376 ⟸ XM_039095448
- Peptide Label:	isoform X1
- UniProtKB:	G3V8G1 (UniProtKB/TrEMBL), A6KAI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951378 ⟸ XM_039095450
- Peptide Label:	isoform X1
- UniProtKB:	G3V8G1 (UniProtKB/TrEMBL), A6KAI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951383 ⟸ XM_039095455
- Peptide Label:	isoform X1
- UniProtKB:	G3V8G1 (UniProtKB/TrEMBL), A6KAI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951380 ⟸ XM_039095452
- Peptide Label:	isoform X1
- UniProtKB:	G3V8G1 (UniProtKB/TrEMBL), A6KAI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951375 ⟸ XM_039095447
- Peptide Label:	isoform X1
- UniProtKB:	G3V8G1 (UniProtKB/TrEMBL), A6KAI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951391 ⟸ XM_039095463
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038951377 ⟸ XM_039095449
- Peptide Label:	isoform X1
- UniProtKB:	G3V8G1 (UniProtKB/TrEMBL), A6KAI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951394 ⟸ XM_039095466
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063132206 ⟸ XM_063276136
- Peptide Label:	isoform X1
- UniProtKB:	A6KAI4 (UniProtKB/TrEMBL), G3V8G1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132211 ⟸ XM_063276141
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063132207 ⟸ XM_063276137
- Peptide Label:	isoform X1
- UniProtKB:	A6KAI4 (UniProtKB/TrEMBL), G3V8G1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132208 ⟸ XM_063276138
- Peptide Label:	isoform X1
- UniProtKB:	A6KAI4 (UniProtKB/TrEMBL), G3V8G1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132209 ⟸ XM_063276139
- Peptide Label:	isoform X1
- UniProtKB:	A6KAI4 (UniProtKB/TrEMBL), G3V8G1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132205 ⟸ XM_063276135
- Peptide Label:	isoform X1
- UniProtKB:	A6KAI4 (UniProtKB/TrEMBL), G3V8G1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132210 ⟸ XM_063276140
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063132212 ⟸ XM_063276142
- Peptide Label:	isoform X10

Ensembl Acc Id:

ENSRNOP00000098927 ⟸ ENSRNOT00000147265

Ensembl Acc Id:

ENSRNOP00000109333 ⟸ ENSRNOT00000170055

Ensembl Acc Id:

ENSRNOP00000110575 ⟸ ENSRNOT00000146723

Ensembl Acc Id:

ENSRNOP00000099619 ⟸ ENSRNOT00000168062

Ensembl Acc Id:

ENSRNOP00000101042 ⟸ ENSRNOT00000166040

Protein Domains

Peptidase M14

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V8G1-F1-model_v2	AlphaFold	G3V8G1	1-1219	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306307	AgrOrtholog
BioCyc Gene	G2FUF-10405	BioCyc
Ensembl Genes	ENSRNOG00000018651	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025381	ENTREZGENE
	ENSRNOT00000025381.8	UniProtKB/TrEMBL
	ENSRNOT00000091370	ENTREZGENE
	ENSRNOT00000091370.3	UniProtKB/TrEMBL
	ENSRNOT00000146723	ENTREZGENE
	ENSRNOT00000146723.1	UniProtKB/TrEMBL
	ENSRNOT00000147265	ENTREZGENE
	ENSRNOT00000147265.1	UniProtKB/TrEMBL
	ENSRNOT00000166040	ENTREZGENE
	ENSRNOT00000166040.1	UniProtKB/TrEMBL
	ENSRNOT00000168062	ENTREZGENE
	ENSRNOT00000168062.1	UniProtKB/TrEMBL
	ENSRNOT00000170055.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
	2.60.40.3120	UniProtKB/TrEMBL
	Zn peptidases	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8369129	IMAGE-MGC_LOAD
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	CBPC1/4	UniProtKB/TrEMBL
	Cytosolic_carboxypeptidase	UniProtKB/TrEMBL
	Pepdidase_M14_N	UniProtKB/TrEMBL
	Peptidase_M14	UniProtKB/TrEMBL
KEGG Report	rno:290986	UniProtKB/TrEMBL
MGC_CLONE	MGC:187642	IMAGE-MGC_LOAD
NCBI Gene	290986	ENTREZGENE
PANTHER	CYTOSOLIC CARBOXYPEPTIDASE	UniProtKB/TrEMBL
	CYTOSOLIC CARBOXYPEPTIDASE 1	UniProtKB/TrEMBL
Pfam	Pepdidase_M14_N	UniProtKB/TrEMBL
	Peptidase_M14	UniProtKB/TrEMBL
	TPR_CCP1_N	UniProtKB/TrEMBL
PhenoGen	Agtpbp1	PhenoGen
PROSITE	PEPTIDASE_M14	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018651	RatGTEx
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
	Zn-dependent exopeptidases	UniProtKB/TrEMBL
UniProt	A0A0G2JZV3	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L4P2_RAT	UniProtKB/TrEMBL
	A0ABK0L6N1_RAT	UniProtKB/TrEMBL
	A0ABK0L864_RAT	UniProtKB/TrEMBL
	A0ABK0LF37_RAT	UniProtKB/TrEMBL
	A0ABK0M5C4_RAT	UniProtKB/TrEMBL
	A6KAI4	ENTREZGENE, UniProtKB/TrEMBL
	B0BN26_RAT	UniProtKB/TrEMBL
	G3V8G1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-02-18	Agtpbp1	ATP/GTP binding carboxypeptidase 1	Agtpbp1	ATP/GTP binding protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Agtpbp1	ATP/GTP binding protein 1	Agtpbp1_predicted	ATP/GTP binding protein 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Agtpbp1_predicted	ATP/GTP binding protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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