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Gene: Btbd7 (BTB domain containing 7) Rattus norvegicus

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Symbol:

Btbd7

Name:

BTB domain containing 7

RGD ID:

1306262

Description:

Predicted to be involved in regulation of branching involved in salivary gland morphogenesis. Predicted to be located in nucleus. Orthologous to human BTBD7 (BTB domain containing 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; copper atom.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

BTB (POZ) domain containing 7; BTB/POZ domain-containing protein 7; LOC362772

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BTBD7 (BTB domain containing 7)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther
Mus musculus (house mouse):	Btbd7 (BTB domain containing 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Btbd7 (BTB domain containing 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BTBD7 (BTB domain containing 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BTBD7 (BTB domain containing 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Btbd7 (BTB domain containing 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BTBD7 (BTB domain containing 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BTBD7 (BTB domain containing 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Btbd7 (BTB domain containing 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Btbd7 (BTB domain containing 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Btbd7 (BTB domain containing 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	BTBD7 (BTB domain containing 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	btbd7 (BTB (POZ) domain containing 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C39F7.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	C39F7.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG16952	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	btbd7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	btbd7	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	127,685,185 - 127,774,947 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	127,688,421 - 127,737,222 (-)	Ensembl				GRCr8
mRatBN7.2	6	121,920,365 - 122,010,114 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	121,923,023 - 121,972,405 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	122,062,006 - 122,110,800 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	122,357,262 - 122,406,061 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	121,693,292 - 121,742,006 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	126,658,398 - 126,748,497 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	126,661,634 - 126,710,858 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	135,864,426 - 135,954,399 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	127,056,657 - 127,105,458 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	119,410,556 - 119,459,277 (-)	NCBI		Celera
RGSC_v3.1	6	127,060,831 - 127,109,204 (-)	NCBI
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

CGP 52608 (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

coumestrol (ISO)

dexamethasone (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

FR900359 (ISO)

indometacin (ISO)

lead diacetate (ISO)

niclosamide (ISO)

orphenadrine (EXP)

ozone (ISO)

paracetamol (ISO)

pentanal (ISO)

phenobarbital (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

tamoxifen (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

morphogenesis of a branching epithelium (IEA)

regulation of branching involved in salivary gland morphogenesis (IBA,ISO)

Cellular Component

nucleus (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11527404	PMID:20671187

Genomics

Comparative Map Data

Btbd7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	127,685,185 - 127,774,947 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	127,688,421 - 127,737,222 (-)	Ensembl				GRCr8
mRatBN7.2	6	121,920,365 - 122,010,114 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	121,923,023 - 121,972,405 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	122,062,006 - 122,110,800 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	122,357,262 - 122,406,061 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	121,693,292 - 121,742,006 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	126,658,398 - 126,748,497 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	126,661,634 - 126,710,858 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	135,864,426 - 135,954,399 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	127,056,657 - 127,105,458 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	119,410,556 - 119,459,277 (-)	NCBI		Celera
RGSC_v3.1	6	127,060,831 - 127,109,204 (-)	NCBI
Cytogenetic Map	6	q32	NCBI

BTBD7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	93,237,550 - 93,333,036 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	93,237,550 - 93,333,092 (-)	Ensembl			hg38	GRCh38
GRCh37	14	93,703,896 - 93,799,382 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	92,773,649 - 92,869,138 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	92,823,726 - 92,869,138	NCBI
Celera	14	73,757,920 - 73,853,399 (-)	NCBI		Celera
Cytogenetic Map	14	q32.12	NCBI
HuRef	14	73,884,190 - 73,979,391 (-)	NCBI		HuRef
CHM1_1	14	93,641,911 - 93,737,412 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	87,469,459 - 87,564,916 (-)	NCBI		T2T-CHM13v2.0

Btbd7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	102,747,056 - 102,844,733 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	102,747,056 - 102,844,730 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	102,780,797 - 102,878,471 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	102,780,797 - 102,878,471 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	104,022,858 - 104,116,616 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	103,185,698 - 103,279,456 (-)	NCBI		MGSCv36	mm8
Celera	12	104,002,002 - 104,058,498 (-)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	52.25	NCBI

Btbd7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	15,351,688 - 15,445,704 (-)	Ensembl
ChiLan1.0	NW_004955438	15,345,678 - 15,445,705 (-)	NCBI	ChiLan1.0	ChiLan1.0

BTBD7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	94,395,243 - 94,490,849 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	93,611,748 - 93,707,266 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	73,870,163 - 73,965,819 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	93,206,479 - 93,301,895 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	93,211,207 - 93,264,835 (-)	Ensembl			panPan2	panpan1.1

BTBD7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	62,437,825 - 62,547,419 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	62,441,752 - 62,522,836 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	62,014,795 - 62,124,540 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	62,708,795 - 62,818,504 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	62,712,265 - 62,794,000 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	62,387,479 - 62,496,950 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	62,438,869 - 62,548,499 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	62,768,363 - 62,877,830 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Btbd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	12,200,112 - 12,309,748 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936733	1,153,955 - 1,266,934 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936733	1,157,143 - 1,217,111 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BTBD7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	114,617,508 - 114,707,095 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	114,617,489 - 114,707,056 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	121,202,700 - 121,292,271 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BTBD7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	70,979,273 - 71,084,485 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	70,979,232 - 71,041,628 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	58,230,859 - 58,335,941 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Btbd7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	9,665,086 - 9,714,685 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	9,659,249 - 9,768,359 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Btbd7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	114,057,358 - 114,153,137 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Btbd7
272 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	114
Count of miRNA genes:	94
Interacting mature miRNAs:	106
Transcripts:	ENSRNOT00000064914
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	114241077	147156653	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	112483610	147156653	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	110921244	147156653	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	118366855	147156653	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	122236101	147156653	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	121444670	147156653	Rat

Markers in Region

D6Hmgc12

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	6	127,703,740 - 127,704,057 (+)	Marker Load Pipeline
mRatBN7.2	6	121,938,920 - 121,939,237 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	126,676,954 - 126,677,270	NCBI	Rnor6.0
Rnor_5.0	6	135,882,984 - 135,883,300	UniSTS	Rnor5.0
Celera	6	119,425,813 - 119,426,129	UniSTS
Cytogenetic Map	6	q32	UniSTS

PMC24996P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	121,935,028 - 121,935,175 (+)	MAPPER	mRatBN7.2
mRatBN7.2	14	91,666,548 - 91,666,686 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	126,673,062 - 126,673,208	NCBI	Rnor6.0
Rnor_5.0	6	135,879,092 - 135,879,238	UniSTS	Rnor5.0
RGSC_v3.4	6	127,068,085 - 127,068,231	UniSTS	RGSC3.4
Celera	6	119,421,921 - 119,422,067	UniSTS
Cytogenetic Map	6	q32	UniSTS
Cytogenetic Map	14	q22	UniSTS

X95591

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	91,670,652 - 91,670,836 (-)	MAPPER	mRatBN7.2
mRatBN7.2	14	91,670,652 - 91,670,836 (+)	MAPPER	mRatBN7.2
mRatBN7.2	6	121,934,495 - 121,934,678 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	126,672,529 - 126,672,711	NCBI	Rnor6.0
Rnor_6.0	14	100,425,354 - 100,425,537	NCBI	Rnor6.0
Rnor_5.0	6	135,878,559 - 135,878,741	UniSTS	Rnor5.0
Rnor_5.0	14	100,113,945 - 100,114,128	UniSTS	Rnor5.0
RGSC_v3.4	6	127,067,552 - 127,067,734	UniSTS	RGSC3.4
RGSC_v3.4	14	98,164,061 - 98,164,244	UniSTS	RGSC3.4
Celera	14	90,716,639 - 90,716,822	UniSTS
Celera	6	119,421,388 - 119,421,570	UniSTS
Cytogenetic Map	6	q32	UniSTS
Cytogenetic Map	14	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC109025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064914 ⟹ ENSRNOP00000062323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	127,688,421 - 127,737,222 (-)	Ensembl
mRatBN7.2 Ensembl	6	121,923,601 - 121,972,405 (-)	Ensembl
Rnor_6.0 Ensembl	6	126,661,634 - 126,710,858 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081127 ⟹ ENSRNOP00000074965

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	127,688,434 - 127,737,222 (-)	Ensembl
mRatBN7.2 Ensembl	6	121,923,023 - 121,972,405 (-)	Ensembl
Rnor_6.0 Ensembl	6	126,662,449 - 126,710,854 (-)	Ensembl

RefSeq Acc Id:

NM_001108720 ⟹ NP_001102190

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	127,688,421 - 127,737,222 (-)	NCBI
mRatBN7.2	6	121,923,601 - 121,972,405 (-)	NCBI
Rnor_6.0	6	126,661,634 - 126,710,858 (-)	NCBI
Rnor_5.0	6	135,864,426 - 135,954,399 (-)	NCBI
RGSC_v3.4	6	127,056,657 - 127,105,458 (-)	RGD
Celera	6	119,410,556 - 119,459,277 (-)	RGD

Sequence:

show sequence

AGAAATGGATGAAAAGAGGCTGCTGGATCCAGGGTTGAAGGTTCGTAAAGGCCTCTGGGATTAC
CCTCTGAAGAACCAGCAGATGGAATGCCAGAGTGACTGAAGAAAATGGGTGCTAATGCATCTAA
CTATCCTCATTCATGTTCCCCAAGGGTAGGGGGAAATTCACAGGCCCAGCAGACTTTCATAGGA
ACATCTTCCTATTCTCAGCAAGGCTATGGTTGTGAGTCAAAGTTGTATAGCCTTGACCACGGCC
ATGAAAAACCACAAGACAAAAAAAAGAGAACCTCTGGCCTTGCTACTCTCAAAAAGAAGTTCAT
TAAACGTCGAAAATCTAATAGATCGGCTGATCATGCGAAGCAGATGCGAGAACTCCTGTCTGGG
TGGGATGTTAGAGATGTCAATGCACTAGTGGAAGAATATGAGGGGACTTCAGCCTTAAAGGAGC
TTTCTCTGCAAGCCAGTTTGGCTAGACCAGAAGCTCGGACACTGCAGAAGGACATGGCTGACCT
TTATGAGTATAAGTACTGTACTGATGTGGACTTAATATTTCAAGAAACTTGTTTCCCTGTTCAT
CGTGCCATTTTGGCAGCCAGGTGTCCATTTTTCAAAACACTGCTATCTTCCTCACCTGAGTATG
GGGCAGAGATAATAATGGATATCAGTACAGCTGGTATTGATATGCCCATGTTTTCTGCCTTGTT
ACACTACCTTTATACAGGAGAATTTGGAATGGAGGACTCAAGATTTCAGAATGTCGATATCCTT
GTTCAGCTTAGTGAAGAATTTGGAACACCAAATTCCCTTGATGTAGATATGCGTGGACTCTTTG
ATTACATGTGTTATTATGATGTTGTCCTTAGTTTTTCTTCAGATTCTGAACTAGTTGAAGCTTT
TGGTGGAAATCAGAACTGTTTAGATGAAGAGCTCAAAGCCCACAAGGCTATTATTTCTGCACGG
TCCCCATTTTTCCGAAATTTATTACAAAGGAGAATACGGACTGGTGAAGAAATCACAGACCGAA
CTTTGAGAACTCCTACAAGAATTATATTAGATGAGTCCATTATACCAAAAAAATATGCAAAAGT
GATATTACACTGTATGTATACCGATGTGGTGGACCTCTCTGTTTTGCACTGCAGCCCCTCTGTG
GGGAGTCTCAGTGAAGTTCAAGCTCTCGTCGCAGGGAAGCCAAACATGACCAGGGCAGAAGAAG
CCATGGAGCTTTACCACATAGCCCTGTTCTTGGAATTTAACATGCTTGCACAAGGCTGTGAGGA
TATCATTGCTGAGAGCATCTCCTTAGAGACCTTAATTGCTATCCTCAAGTGGAGCTCACATCCG
TATGGTTCTAAGTGGGTGCACCGACAAGCTTTGCATTTCCTTTGTGAGGAATTATCCCAGGTCA
TGACTTCAGATGTTTTTTATGAACTCAGCAAAGACCATCTGCTTACTGCTATCCAGTCTGACTA
CCTACAGGCAAGCGAACAAGATATCCTTAAATATCTGATTAAATGGGGTGAGCATCAGTTGATG
AAGAGAATAGCAGACAGAGAGCCAAACCTCCTGAGCGGCACTGCACATAGTGTGAACAAAAGAG
GTGTGAAGAGAAGAGACCTGGACATGGAAGAACTCAGAGAGATCCTTTCTTCTCTCCTGCCTTT
TGTGCGAATTGAACACATCTTACCTATGAACAGTGAGGTCTTAAGCGATGCAATGAAAAGAGGC
TTGATCAGTACACCCCCATCAGATATGCTTCCTACAACAGAAGGGGGGAAATCAAATGCCTGGC
TTCGGCAAAAAAATGCTGGCATATATGTTCGTCCTCGGCTGTTTTCTCCGTATGTGGAAGAAGC
GAAGTCGGTGCTGGATGAGATGATGGTGGAGCAAACAGACCTGGTGCGACTCCGAATGGTGCGA
ATGTCCAACGTTCCAGACACACTTTACATGGTCAGCAATGCCATGCCCCAGTGCTGCCACATGA
TCAGCCACCAGCAGATCAGCAGTAACCAGTCAAGCCCTCCATCAGTTGTAGCCAATGAAATCCC
AGTTCCTCGTCTCCTCATTATGAAGGACATGGTGAGGCGCCTGCAGGAACTGCGGCACACAGAG
CAGGTGCAGAGAGCCTATGCACTGAACTGTGGGGAAGGCGCCACCGTCAGCTATGAGATCCAGA
TCCGAGTGCTCAGAGAGTTTGGTCTTGCAGATGCTGCTGCAGAGCTCCTGCAGTGTCCACAGCC
TGTGCTGAATGATCTGATGCCAGATATCGCCATGGGGGTGTCTACATTGTCACTCAAGGACAGG
AGGCTCCCAGAGCTTGCTGCAGACACAGAATTATGCCAGACAGTTTCCGAAGCAGGACCAGGGC
CTCCCCAGCATCTCTCATGTATTCCACAGAGACATACACACACGTCTCGGAAAAAACACACACT
AGAGCAGAAACCAGACGGTAGAGAAAGTCAGCAGGAATACCCAGATCTCTATGACTTCCCAAAT
GCTGCCTGCAGGCCTTCCACTCCTGCTCCTGGCAGACGCACTCCTTCCCCTTCTCGTGGTAGAT
ATTTTGGTCCGGACTTGTACAGCCACAATAAGGCATCACCAAATGGCTTAAAGTCAGCTTACCT
ACCTGGTCAGACCTCTCCTAAAAAGCAGGAAGACACTAGGAGAGAATATCCACTTTCTCCTGAT
GGGCATCCACATAAGCAGAAGAACGAGCCAATACGCCTGGATGTTGTTGAGCAGCCTCCACAGA
GGCCAGACTTCCCTTCAGCAGCCTCAGAAAATGCTAGTAATGGTCCAGCCCATGTCAGGGCACG
AACTGCAGTAGAAACTGACTTGACTTTTGGGCTGACACCTAACAGACCTCCTTCCCATTCTGCA
TGTAGCTCTGAAGTTCTCGAAGAGCGATCTAGTAGAAGACTGACAGACAGTGAGTCCCTGGGCC
ATGGAGCTCAGAGAAATGCAGATCTGGAAAGGGACGATTCCATTAGCAGAGGGAGGAGGTCGCC
AAGTAAACCAGACTTCCTCTACAAAAAGTCTGCCCTCTGAAGTAGCTTCCAAGTCTGTGCCTGA
GATGTGAAACATCCCGTCTTATGATGTAACCCAACAACTTACTGACCGGTTTGTCGATGCCAGC
TCAGTTTCACATGTTATCGTAGCTTCTGTGTGTATGTGTTTATTAGACATGGCATGCTAAGGGG
ATTGTTTTGAACGCTGCATCTGTCTTTCGTGTTTAACAGTTGTGTGGGGAGCATCTTCAAGAGC
AAGCAAGCTGGCACTTTCTCTTTACAGATGACTTTTTGCACTTGTACATTTTATTTGTATTGAT
TTTATAACAGTGTGTTAAACTTTATTGCTACATTTAAAGGACTGTATTTTCATACTTTTTGCAT
TTTACCTATCATCTACCAGTTTCCATGTGCATTGGGTTGCACACTAAGATGTATTTTCTTACAA
AATAGTTGTGTTTATTTTTTAATTATAGAAATTCCAAAGAACAGCACATCAATCGCTCCTCTCT
TTTTTGGTGATTGTTTCCGTTGAGAAATCTTCCTGCTCAGTCTCCATAAATCCAATGTCATTCT
TTTTTATAAGTCTTGAAAGCCAGTCTTCATTCCCCACAGCAGAAGTCCAGGTCTTGATGCTTTT
TTGATTCAGTAAAGAACAAGGAGGAAAGCCCTGATATCCAGCCTGTGGCTGCTATTTAATTACA
GTGCGGTTTTGTCGGGAACCCTGTAGATTCTGGAGTAGAGCTACTCACTCAAATGGCATAAGGA
AAGTAGGCTTTAGTATTAAAAAACAGTAGTGCTGGGCTCAGTGGAAATGTGTACACTGGCAGTC
CCAGCCCATGGGAGTGGAGACAGCCGGTCAGAAGTTCAAGGTTGTTTCAGGCTACGTAGTAAGT
TCAAGATTAGACTGGATGTCTGAGCTCTGCCTCCAAAAACAGTAGCAGAGGTGGTGACATCACA
CACAGGGCACACTGCACTGATGGGGTGCCTGGCTCTGCATATGACTCACTATACTGGGGGAAAT
GACTGCCTGTGGTTGTCTTGCATTTTGTGG

hide sequence

RefSeq Acc Id:

XM_008764818 ⟹ XP_008763040

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	127,685,185 - 127,774,936 (-)	NCBI
mRatBN7.2	6	121,920,365 - 122,010,110 (-)	NCBI
Rnor_6.0	6	126,658,398 - 126,748,495 (-)	NCBI

Sequence:

show sequence

AGGCGCGCCAGGGCCACGCCGAGGTGAGCCCCTCCTGCTCCCTGTCGGAGTCAAAATGGCGACG
GGGGGAACCTGGAGTGGTCCCGGAGCCTAAACCACTGACAGGAGAGGGGAGGGCGGCGGCGGCG
GCGGCGGCTGGAGGAGAATGGCCGCGGGGGCTGGCGCCAGTGCGGACGGCGGCGCTGGGGGCGG
CGGCGGCGGAGGCGACGGCAGCGGTCCCAGCAGCAGTCGCGGCGGGAGGAGCCTCCGAGAAATG
GATGAAAAGAGGCTGCTGGATCCAGGGTTGAAGGTTCGTAAAGGCCTCTGGGATTACCCTCTGA
AGAACCAGCAGATGGAATGCCAGAGTGACTGAAGAAAATGGGTGCTAATGCATCTAACTATCCT
CATTCATGTTCCCCAAGGGTAGGGGGAAATTCACAGGCCCAGCAGACTTTCATAGGAACATCTT
CCTATTCTCAGCAAGGCTATGGTTGTGAGTCAAAGTTGTATAGCCTTGACCACGGCCATGAAAA
ACCACAAGACAAAAAAAAGAGAACCTCTGGCCTTGCTACTCTCAAAAAGAAGTTCATTAAACGT
CGAAAATCTAATAGATCGGCTGATCATGCGAAGCAGATGCGAGAACTCCTGTCTGGGTGGGATG
TTAGAGATGTCAATGCACTAGTGGAAGAATATGAGGGGACTTCAGCCTTAAAGGAGCTTTCTCT
GCAAGCCAGTTTGGCTAGACCAGAAGCTCGGACACTGCAGAAGGACATGGCTGACCTTTATGAG
TATAAGTACTGTACTGATGTGGACTTAATATTTCAAGAAACTTGTTTCCCTGTTCATCGTGCCA
TTTTGGCAGCCAGGTGTCCATTTTTCAAAACACTGCTATCTTCCTCACCTGAGTATGGGGCAGA
GATAATAATGGATATCAGTACAGCTGGTATTGATATGCCCATGTTTTCTGCCTTGTTACACTAC
CTTTATACAGGAGAATTTGGAATGGAGGACTCAAGATTTCAGAATGTCGATATCCTTGTTCAGC
TTAGTGAAGAATTTGGAACACCAAATTCCCTTGATGTAGATATGCGTGGACTCTTTGATTACAT
GTGTTATTATGATGTTGTCCTTAGTTTTTCTTCAGATTCTGAACTAGTTGAAGCTTTTGGTGGA
AATCAGAACTGTTTAGATGAAGAGCTCAAAGCCCACAAGGCTATTATTTCTGCACGGTCCCCAT
TTTTCCGAAATTTATTACAAAGGAGAATACGGACTGGTGAAGAAATCACAGACCGAACTTTGAG
AACTCCTACAAGAATTATATTAGATGAGTCCATTATACCAAAAAAATATGCAAAAGTGATATTA
CACTGTATGTATACCGATGTGGTGGACCTCTCTGTTTTGCACTGCAGCCCCTCTGTGGGGAGTC
TCAGTGAAGTTCAAGCTCTCGTCGCAGGGAAGCCAAACATGACCAGGGCAGAAGAAGCCATGGA
GCTTTACCACATAGCCCTGTTCTTGGAATTTAACATGCTTGCACAAGGCTGTGAGGATATCATT
GCTGAGAGCATCTCCTTAGAGACCTTAATTGCTATCCTCAAGTGGAGCTCACATCCGTATGGTT
CTAAGTGGGTGCACCGACAAGCTTTGCATTTCCTTTGTGAGGAATTATCCCAGGTCATGACTTC
AGATGTTTTTTATGAACTCAGCAAAGACCATCTGCTTACTGCTATCCAGTCTGACTACCTACAG
GCAAGCGAACAAGATATCCTTAAATATCTGATTAAATGGGGTGAGCATCAGTTGATGAAGAGAA
TAGCAGACAGAGAGCCAAACCTCCTGAGCGGCACTGCACATAGTGTGAACAAAAGAGGTGTGAA
GAGAAGAGACCTGGACATGGAAGAACTCAGAGAGATCCTTTCTTCTCTCCTGCCTTTTGTGCGA
ATTGAACACATCTTACCTATGAACAGTGAGGTCTTAAGCGATGCAATGAAAAGAGGCTTGATCA
GTACACCCCCATCAGATATGCTTCCTACAACAGAAGGGGGGAAATCAAATGCCTGGCTTCGGCA
AAAAAATGCTGGCATATATGTTCGTCCTCGGCTGTTTTCTCCGTATGTGGAAGAAGCGAAGTCG
GTGCTGGATGAGATGATGGTGGAGCAAACAGACCTGGTGCGACTCCGAATGGTGCGAATGTCCA
ACGTTCCAGACACACTTTACATGGTCAGCAATGCCATGCCCCAGTGCTGCCACATGATCAGCCA
CCAGCAGATCAGCAGTAACCAGTCAAGCCCTCCATCAGTTGTAGCCAATGAAATCCCAGTTCCT
CGTCTCCTCATTATGAAGGACATGGTGAGGCGCCTGCAGGAACTGCGGCACACAGAGCAGGTGC
AGAGAGCCTATGCACTGAACTGTGGGGAAGGCGCCACCGTCAGCTATGAGATCCAGATCCGAGT
GCTCAGAGAGTTTGGTCTTGCAGATGCTGCTGCAGAGCTCCTGCAGAATCCTCACAAGTTCTTT
CCTGATGAACGATTTGGGGATGAAAGTCCGCTCTTGACAATGAGGCAGCCTGGGAGATGTCGTG
TCAACAGCACCCCTACTGCAGAAACCATGTTTACAGACCTAGACTCTTTCGTGGCCTTCCATCC
ACCTCTTCCCCCTCCTCCCCCTCCATACCACCCTCCAGCTACTCCAATCCATAACCAGCTCAAA
GCAGGCTGGAAACAAAGGCCTCCCAGTCATCACCCTTCCCGTTCATTTTCTTACCCCTGTAATC
ATTCACTGTTTCACTCCAGAACAGCTCCTAAACCTGGCCCTCCCCCAGTCTATTTGCCAGGTGT
TAAAGTAGCGCCTCCCGACTGTACCAACACCACAGCTCTGGGGAGACAGACGGTTGCTGCTGCT
GCTGCCGCTGCTGCTGCCTCAGCAGCAGTAATATCTGAGAAGCAAGTGTGTCCACAGCCTGTGC
TGAATGATCTGATGCCAGATATCGCCATGGGGGTGTCTACATTGTCACTCAAGGACAGGAGGCT
CCCAGAGCTTGCTGCAGACACAGAATTATGCCAGACAGTTTCCGAAGCAGGACCAGGGCCTCCC
CAGCATCTCTCATGTATTCCACAGAGACATACACACACGTCTCGGAAAAAACACACACTAGAGC
AGAAACCAGACGGTAGAGAAAGTCAGCAGGAATACCCAGATCTCTATGACTTCCCAAATGCTGC
CTGCAGGCCTTCCACTCCTGCTCCTGGCAGACGCACTCCTTCCCCTTCTCGTGGTAGATATTTT
GGTCCGGACTTGTACAGCCACAATAAGGCATCACCAAATGGCTTAAAGTCAGCTTACCTACCTG
GTCAGACCTCTCCTAAAAAGCAGGAAGACACTAGGAGAGAATATCCACTTTCTCCTGATGGGCA
TCCACATAAGCAGAAGAACGAGCCAATACGCCTGGATGTTGTTGAGCAGCCTCCACAGAGGCCA
GACTTCCCTTCAGCAGCCTCAGAAAATGCTAGTAATGGTCCAGCCCATGTCAGGGCACGAACTG
CAGTAGAAACTGACTTGACTTTTGGGCTGACACCTAACAGACCTCCTTCCCATTCTGCATGTAG
CTCTGAAGTTCTCGAAGAGCGATCTAGTAGAAGACTGACAGACAGTGAGTCCCTGGGCCATGGA
GCTCAGAGAAATGCAGATCTGGAAAGGGACGATTCCATTAGCAGAGGGAGGAGGTCGCCAAGTA
AACCAGACTTCCTCTACAAAAAGTCTGCCCTCTGAAGTAGCTTCCAAGTCTGTGCCTGAGATGT
GAAACATCCCGTCTTATGATGTAACCCAACAACTTACTGACCGGTTTGTCGATGCCAGCTCAGT
TTCACATGTTATCGTAGCTTCTGTGTGTATGTGTTTATTAGACATGGCATGCTAAGGGGATTGT
TTTGAACGCTGCATCTGTCTTTCGTGTTTAACAGTTGTGTGGGGAGCATCTTCAAGAGCAAGCA
AGCTGGCACTTTCTCTTTACAGATGACTTTTTGCACTTGTACATTTTATTTGTATTGATTTTAT
AACAGTGTGTTAAACTTTATTGCTACATTTAAAGGACTGTATTTTCATACTTTTTGCATTTTAC
CTATCATCTACCAGTTTCCATGTGCATTGGGTTGCACACTAAGATGTATTTTCTTACAAAATAG
TTGTGTTTATTTTTTAATTATAGAAATTCCAAAGAACAGCACATCAATCGCTCCTCTCTTTTTT
GGTGATTGTTTCCGTTGAGAAATCTTCCTGCTCAGTCTCCATAAATCCAATGTCATTCTTTTTT
ATAAGTCTTGAAAGCCAGTCTTCATTCCCCACAGCAGAAGTCCAGGTCTTGATGCTTTTTTGAT
TCAGTAAAGAACAAGGAGGAAAGCCCTGATATCCAGCCTGTGGCTGCTATTTAATTACAGTGCG
GTTTTGTCGGGAACCCTGTAGATTCTGGAGTAGAGCTACTCACTCAAATGGCATAAGGAAAGTA
GGCTTTAGTATTAAAAAACAGTAGTGCTGGGCTCAGTGGAAATGTGTACACTGGCAGTCCCAGC
CCATGGGAGTGGAGACAGCCGGTCAGAAGTTCAAGGTTGTTTCAGGCTACGTAGTAAGTTCAAG
ATTAGACTGGATGTCTGAGCTCTGCCTCCAAAAACAGTAGCAGAGGTGGTGACATCACACACAG
GGCACACTGCACTGATGGGGTGCCTGGCTCTGCATATGACTCACTATACTGGGGGAAATGACTG
CCTGTGGTTGTCTTGCATTTTGTGGGGGGGGAAAGGGCTTCAGTTTTCTGTACGTCATTTGGTA
TTTGTAATCATACGTTTTTCTTAATATTGTCAGTATATCTGGATTTTGGTGTCTTCTATAAAGG
TGAATAATGCATAGTGCTTTACCACCAGAAAAACTGATTTTGTTTTCAGTAAAACACTACATGT
CCTACTTGAACTCCACTGGAGATGCTGGTTTGGTATTCACTGAATCACTGAGCATGTGGGTTCG
TTCAAGGGCAACGTGTGAGCTAAGGACTGTTTTTATTTGTCTTTTGTTTTTTCTTACTTTCCTA
TGTAAATATATTAGTATTTAAGTTTTTTAATCACTTCAGCACCATTTGAACATTCATTTTTGTA
TTTTTATAAACACATACAGCCGTAGCACCTAGAAGAAAGGAGACTTCCTGAACATTCTGTATGG
AAGAGATATTTGGGAACCTCTCCTCTGTGTGTATACATTTAACTAGGAATCACTTACACTCACT
CTAAAACTATGCAGGGCTAGGGAGCCTTCACAAGCTATCGGAGAAGTGAATTGCACACACTTTG
AAATAAATAGATTTCTATTGGGTATCAGCAACTCTGGTTTCTCCTGAAACTATAGTTTCTCTTA
TGATCTTTTCCTTCTTTACCCTGTGGATATACACTCAGGAATGATCTGACATTTAAACCATCCT
AACAGTAGATAATCGCATAGACGGGAACATGCCCATCTCTGCCAGCCCCTGTAATCGCTGCCAC
TGGTTCTGTTGTCTGGCTGATTACTCATGAGTCTGGGTACTGGACGACCCTGGCAATGTGTATC
CTGAGCTCAGAGGCTTGGACAAGGCAGGCAGATTTCTGTTGTAAGGTGGCTCTTTTTTGTTTCT
TAAGGTAGAAACCCACAGGGCTCTGCTCATCTTTACAAGTGGAGTCTTCTGAAGCACACAGTCT
CGGGCTGCAGAAGCAAAGCAATTCCATTCTGGTCCTACCTGTTTCTGGGACCTCATTATTTGAT
GTGGATTGAGATTGTTCCAGATCAGACTGTACTGTGCAGGTGCTGCAGAGAGGCAAGTCCATCA
AAGCTTCCTCACCTTTGACAGGCTTTGTTTTTTAACATTTTAGGACCATTGATCTCACACTTTT
TATTTTTTCTGAAAATTCATTAAATGTGCTCTCTAATCCATATGGTGTAATTATACAAGTAAAC
GACACTGTTTGTAGTCTTATTTAATTTGTAAGGTTTGTTTTTAGCGACTTAGCAGGTTACCTGG
CCAAACTGTGTATAGAGGGAAATCTTGCTTTGGTCTGTGGGTGTGGACTGGTGTGACTTACAGA
AGATAAGCAGATGTGGGGCTGTGTGCGATAGGATAGGTGTTCATGGGCAGCTAAGCGCGTGCCT
CTGGCTGTGACCTATGAAGTTTCTTAATGCTGTACTTACAAATGTGAAGTGTGAGTAGGGTTGG
TCTCGGAAAAGATGGTATTTATGTATAATATAAACCTTAAGCCACAGGAACTGGCATTTTTCTT
AGTGTAAAAATTTAATAAGAACCAAATCACAAAAATCCCAGATCTCCTTTTGAGGCCGGGGACA
ATCAGGCCGTTCGGACAATCACCATTCCAGTCCCACCGAGTGCTGAGGCTGGAGAACCACCTCT
TAGGTTCTCAAGATGCTGTTGATCCTGTTCTTGTATTTTTGTTTTAGTTTTGTAATCTTGAAAA
ATAACTTAAAGTTGCCAGTGGCTCATAAGGAGAAATCAATTAAAACCATTCAAAACATAGATCC
TTAAATTTCCATGTACTGTCCCCCTTTTACATTCCTCCATTGACTCGGTTCTTTAGTGTAGTCC
CTAGGCCAGCGCTAGCCTAGCATTTCAGTAGCCTGTTGGGCTTTTAGGGCTTATAGTGTTAAAT
TTATGTCGTCTGTACCTCTTCTATAACTCAACCTAATTTTTGACTTTGCTTCCTCACTGGCTGT
TGTATTTGGTTTCAGGTTTTGTGTTAACATTTGCCATCCATTGTTGTGTTTTCTTTCATTGTTT
GTTGACAGTGATAGCAATGGGTATAACTCTCGTACATTTAAATGAAGCTGATGCTACAGAATGT
AATGCGAGCCAGTGAACGCCACTTGGCGCCAACCGGTGGAAGCTGGCCTCAGGCGCATTCTCTG
GAGTTGAAGGATCAACACTCCCTGTGTCTACAACAAGGAGATACGTCTTCATCATACTGAACTT
GGCCTTTTAAGGGAAAAATGCTTTTCATGAAATTTGCATAATACCATTGTTTTGCAGTGATAAG
GCATTTGCATGTTTCTGAGGGCTGAGTTAAGCTCTTTGGAGTGAAGACTATCAGTGCCGCAGTG
ATGGGTGCTATCCCCGGGTCTGCAGTGGTCACAAAGTCTACCGTGTAGTTACTTTCAAGCCTCA
TTCAGATAATCTTGCTAAGAGCTGGTCTGCACTCCCCACAGGTGTTTTACTGTCCTCTCTCAAC
ACTGCTTTGAGCCGTGCTCTGTAAAGTGTAAGTTCTTTGTCCCATCAGTTTACTAGCTGTCATG
TGGTTATTGTCTGGGCAAGTCTTTTGATTTTGTTTTCCTTACAAAGTATGTCCATGACTGTATC
AATCTTCTGTATTCAGAACATTATAATGCTGCGGCCATTTTTATAGAACGACTGCAAGTTTGTG
TCCTGGAAATATCTTCTACTCGTGTGTGTATGTGAGCTCTGAGACCAGATCTGTTCTGGAAGAG
TCCTCAGGTATGCCTGCACATGACTGTCTGGGTATCTGGGTAGACGCTAGGGAATTGTGCTTTT
AGATGAGGCAGTTGGAAAACCTGAGCTCCCCTTGCTGTCCGTGTATGTGCCACATCTGGCCTCC
ACCACTGCGTTTCTTGTGGTTGTGCTGTTAATGGTAAAGTCAAGTGCCTTCAATGCTAAAGGCT
CAGAAATCTTTCTTAAACTGATTTCATGTCCTATGCAAGTGTTTTTACAACCTGCATAACCAGT
ACTTTGTAAAACTTGTTTACGCTTCAATTGTACATAGTGTTTTTTAAAGAAATATATAGTATTT
TTATTTAGGTACCTCCAAACTTGAATCCGTCTGTGTGAAACACTGTAAACGACACGTTTCTCTT
TTGCGTACCATCACAGTTGTACAGAGGTTTTCACTGGTTCTATTTTTCTACTGTTACTGATACG
CATGTAACACTGACTTTATCCTCCATATAGTTGGCATTTCAAATAAATGGCTTGTATAGAA

hide sequence

RefSeq Acc Id:

XM_008764819 ⟹ XP_008763041

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	127,685,185 - 127,774,623 (-)	NCBI
mRatBN7.2	6	121,920,365 - 122,009,754 (-)	NCBI
Rnor_6.0	6	126,658,398 - 126,747,869 (-)	NCBI

Sequence:

show sequence

GGACTCCTGTTTACGGGGTGCGGGGCCACGGGTGGGCGTGAGGCCTCAGGGAGGGCCAGAGCTT
GGGGAGGTGTAGGCCTGGGGAGGGTCACTCCACACGGGCGAAGTGAAATCGTCCGGGGTGAGTG
CTCTGGGAGGAAAGAAACTGGCGTTGAGCTTTGACAGAAATGGATGAAAAGAGGCTGCTGGATC
CAGGGTTGAAGGTTCGTAAAGGCCTCTGGGATTACCCTCTGAAGAACCAGCAGATGGAATGCCA
GAGTGACTGAAGAAAATGGGTGCTAATGCATCTAACTATCCTCATTCATGTTCCCCAAGGGTAG
GGGGAAATTCACAGGCCCAGCAGACTTTCATAGGAACATCTTCCTATTCTCAGCAAGGCTATGG
TTGTGAGTCAAAGTTGTATAGCCTTGACCACGGCCATGAAAAACCACAAGACAAAAAAAAGAGA
ACCTCTGGCCTTGCTACTCTCAAAAAGAAGTTCATTAAACGTCGAAAATCTAATAGATCGGCTG
ATCATGCGAAGCAGATGCGAGAACTCCTGTCTGGGTGGGATGTTAGAGATGTCAATGCACTAGT
GGAAGAATATGAGGGGACTTCAGCCTTAAAGGAGCTTTCTCTGCAAGCCAGTTTGGCTAGACCA
GAAGCTCGGACACTGCAGAAGGACATGGCTGACCTTTATGAGTATAAGTACTGTACTGATGTGG
ACTTAATATTTCAAGAAACTTGTTTCCCTGTTCATCGTGCCATTTTGGCAGCCAGGTGTCCATT
TTTCAAAACACTGCTATCTTCCTCACCTGAGTATGGGGCAGAGATAATAATGGATATCAGTACA
GCTGGTATTGATATGCCCATGTTTTCTGCCTTGTTACACTACCTTTATACAGGAGAATTTGGAA
TGGAGGACTCAAGATTTCAGAATGTCGATATCCTTGTTCAGCTTAGTGAAGAATTTGGAACACC
AAATTCCCTTGATGTAGATATGCGTGGACTCTTTGATTACATGTGTTATTATGATGTTGTCCTT
AGTTTTTCTTCAGATTCTGAACTAGTTGAAGCTTTTGGTGGAAATCAGAACTGTTTAGATGAAG
AGCTCAAAGCCCACAAGGCTATTATTTCTGCACGGTCCCCATTTTTCCGAAATTTATTACAAAG
GAGAATACGGACTGGTGAAGAAATCACAGACCGAACTTTGAGAACTCCTACAAGAATTATATTA
GATGAGTCCATTATACCAAAAAAATATGCAAAAGTGATATTACACTGTATGTATACCGATGTGG
TGGACCTCTCTGTTTTGCACTGCAGCCCCTCTGTGGGGAGTCTCAGTGAAGTTCAAGCTCTCGT
CGCAGGGAAGCCAAACATGACCAGGGCAGAAGAAGCCATGGAGCTTTACCACATAGCCCTGTTC
TTGGAATTTAACATGCTTGCACAAGGCTGTGAGGATATCATTGCTGAGAGCATCTCCTTAGAGA
CCTTAATTGCTATCCTCAAGTGGAGCTCACATCCGTATGGTTCTAAGTGGGTGCACCGACAAGC
TTTGCATTTCCTTTGTGAGGAATTATCCCAGGTCATGACTTCAGATGTTTTTTATGAACTCAGC
AAAGACCATCTGCTTACTGCTATCCAGTCTGACTACCTACAGGCAAGCGAACAAGATATCCTTA
AATATCTGATTAAATGGGGTGAGCATCAGTTGATGAAGAGAATAGCAGACAGAGAGCCAAACCT
CCTGAGCGGCACTGCACATAGTGTGAACAAAAGAGGTGTGAAGAGAAGAGACCTGGACATGGAA
GAACTCAGAGAGATCCTTTCTTCTCTCCTGCCTTTTGTGCGAATTGAACACATCTTACCTATGA
ACAGTGAGGTCTTAAGCGATGCAATGAAAAGAGGCTTGATCAGTACACCCCCATCAGATATGCT
TCCTACAACAGAAGGGGGGAAATCAAATGCCTGGCTTCGGCAAAAAAATGCTGGCATATATGTT
CGTCCTCGGCTGTTTTCTCCGTATGTGGAAGAAGCGAAGTCGGTGCTGGATGAGATGATGGTGG
AGCAAACAGACCTGGTGCGACTCCGAATGGTGCGAATGTCCAACGTTCCAGACACACTTTACAT
GGTCAGCAATGCCATGCCCCAGTGCTGCCACATGATCAGCCACCAGCAGATCAGCAGTAACCAG
TCAAGCCCTCCATCAGTTGTAGCCAATGAAATCCCAGTTCCTCGTCTCCTCATTATGAAGGACA
TGGTGAGGCGCCTGCAGGAACTGCGGCACACAGAGCAGGTGCAGAGAGCCTATGCACTGAACTG
TGGGGAAGGCGCCACCGTCAGCTATGAGATCCAGATCCGAGTGCTCAGAGAGTTTGGTCTTGCA
GATGCTGCTGCAGAGCTCCTGCAGAATCCTCACAAGTTCTTTCCTGATGAACGATTTGGGGATG
AAAGTCCGCTCTTGACAATGAGGCAGCCTGGGAGATGTCGTGTCAACAGCACCCCTACTGCAGA
AACCATGTTTACAGACCTAGACTCTTTCGTGGCCTTCCATCCACCTCTTCCCCCTCCTCCCCCT
CCATACCACCCTCCAGCTACTCCAATCCATAACCAGCTCAAAGCAGGCTGGAAACAAAGGCCTC
CCAGTCATCACCCTTCCCGTTCATTTTCTTACCCCTGTAATCATTCACTGTTTCACTCCAGAAC
AGCTCCTAAACCTGGCCCTCCCCCAGTCTATTTGCCAGGTGTTAAAGTAGCGCCTCCCGACTGT
ACCAACACCACAGCTCTGGGGAGACAGACGGTTGCTGCTGCTGCTGCCGCTGCTGCTGCCTCAG
CAGCAGTAATATCTGAGAAGCAAGTGTGTCCACAGCCTGTGCTGAATGATCTGATGCCAGATAT
CGCCATGGGGGTGTCTACATTGTCACTCAAGGACAGGAGGCTCCCAGAGCTTGCTGCAGACACA
GAATTATGCCAGACAGTTTCCGAAGCAGGACCAGGGCCTCCCCAGCATCTCTCATGTATTCCAC
AGAGACATACACACACGTCTCGGAAAAAACACACACTAGAGCAGAAACCAGACGGTAGAGAAAG
TCAGCAGGAATACCCAGATCTCTATGACTTCCCAAATGCTGCCTGCAGGCCTTCCACTCCTGCT
CCTGGCAGACGCACTCCTTCCCCTTCTCGTGGTAGATATTTTGGTCCGGACTTGTACAGCCACA
ATAAGGCATCACCAAATGGCTTAAAGTCAGCTTACCTACCTGGTCAGACCTCTCCTAAAAAGCA
GGAAGACACTAGGAGAGAATATCCACTTTCTCCTGATGGGCATCCACATAAGCAGAAGAACGAG
CCAATACGCCTGGATGTTGTTGAGCAGCCTCCACAGAGGCCAGACTTCCCTTCAGCAGCCTCAG
AAAATGCTAGTAATGGTCCAGCCCATGTCAGGGCACGAACTGCAGTAGAAACTGACTTGACTTT
TGGGCTGACACCTAACAGACCTCCTTCCCATTCTGCATGTAGCTCTGAAGTTCTCGAAGAGCGA
TCTAGTAGAAGACTGACAGACAGTGAGTCCCTGGGCCATGGAGCTCAGAGAAATGCAGATCTGG
AAAGGGACGATTCCATTAGCAGAGGGAGGAGGTCGCCAAGTAAACCAGACTTCCTCTACAAAAA
GTCTGCCCTCTGAAGTAGCTTCCAAGTCTGTGCCTGAGATGTGAAACATCCCGTCTTATGATGT
AACCCAACAACTTACTGACCGGTTTGTCGATGCCAGCTCAGTTTCACATGTTATCGTAGCTTCT
GTGTGTATGTGTTTATTAGACATGGCATGCTAAGGGGATTGTTTTGAACGCTGCATCTGTCTTT
CGTGTTTAACAGTTGTGTGGGGAGCATCTTCAAGAGCAAGCAAGCTGGCACTTTCTCTTTACAG
ATGACTTTTTGCACTTGTACATTTTATTTGTATTGATTTTATAACAGTGTGTTAAACTTTATTG
CTACATTTAAAGGACTGTATTTTCATACTTTTTGCATTTTACCTATCATCTACCAGTTTCCATG
TGCATTGGGTTGCACACTAAGATGTATTTTCTTACAAAATAGTTGTGTTTATTTTTTAATTATA
GAAATTCCAAAGAACAGCACATCAATCGCTCCTCTCTTTTTTGGTGATTGTTTCCGTTGAGAAA
TCTTCCTGCTCAGTCTCCATAAATCCAATGTCATTCTTTTTTATAAGTCTTGAAAGCCAGTCTT
CATTCCCCACAGCAGAAGTCCAGGTCTTGATGCTTTTTTGATTCAGTAAAGAACAAGGAGGAAA
GCCCTGATATCCAGCCTGTGGCTGCTATTTAATTACAGTGCGGTTTTGTCGGGAACCCTGTAGA
TTCTGGAGTAGAGCTACTCACTCAAATGGCATAAGGAAAGTAGGCTTTAGTATTAAAAAACAGT
AGTGCTGGGCTCAGTGGAAATGTGTACACTGGCAGTCCCAGCCCATGGGAGTGGAGACAGCCGG
TCAGAAGTTCAAGGTTGTTTCAGGCTACGTAGTAAGTTCAAGATTAGACTGGATGTCTGAGCTC
TGCCTCCAAAAACAGTAGCAGAGGTGGTGACATCACACACAGGGCACACTGCACTGATGGGGTG
CCTGGCTCTGCATATGACTCACTATACTGGGGGAAATGACTGCCTGTGGTTGTCTTGCATTTTG
TGGGGGGGGAAAGGGCTTCAGTTTTCTGTACGTCATTTGGTATTTGTAATCATACGTTTTTCTT
AATATTGTCAGTATATCTGGATTTTGGTGTCTTCTATAAAGGTGAATAATGCATAGTGCTTTAC
CACCAGAAAAACTGATTTTGTTTTCAGTAAAACACTACATGTCCTACTTGAACTCCACTGGAGA
TGCTGGTTTGGTATTCACTGAATCACTGAGCATGTGGGTTCGTTCAAGGGCAACGTGTGAGCTA
AGGACTGTTTTTATTTGTCTTTTGTTTTTTCTTACTTTCCTATGTAAATATATTAGTATTTAAG
TTTTTTAATCACTTCAGCACCATTTGAACATTCATTTTTGTATTTTTATAAACACATACAGCCG
TAGCACCTAGAAGAAAGGAGACTTCCTGAACATTCTGTATGGAAGAGATATTTGGGAACCTCTC
CTCTGTGTGTATACATTTAACTAGGAATCACTTACACTCACTCTAAAACTATGCAGGGCTAGGG
AGCCTTCACAAGCTATCGGAGAAGTGAATTGCACACACTTTGAAATAAATAGATTTCTATTGGG
TATCAGCAACTCTGGTTTCTCCTGAAACTATAGTTTCTCTTATGATCTTTTCCTTCTTTACCCT
GTGGATATACACTCAGGAATGATCTGACATTTAAACCATCCTAACAGTAGATAATCGCATAGAC
GGGAACATGCCCATCTCTGCCAGCCCCTGTAATCGCTGCCACTGGTTCTGTTGTCTGGCTGATT
ACTCATGAGTCTGGGTACTGGACGACCCTGGCAATGTGTATCCTGAGCTCAGAGGCTTGGACAA
GGCAGGCAGATTTCTGTTGTAAGGTGGCTCTTTTTTGTTTCTTAAGGTAGAAACCCACAGGGCT
CTGCTCATCTTTACAAGTGGAGTCTTCTGAAGCACACAGTCTCGGGCTGCAGAAGCAAAGCAAT
TCCATTCTGGTCCTACCTGTTTCTGGGACCTCATTATTTGATGTGGATTGAGATTGTTCCAGAT
CAGACTGTACTGTGCAGGTGCTGCAGAGAGGCAAGTCCATCAAAGCTTCCTCACCTTTGACAGG
CTTTGTTTTTTAACATTTTAGGACCATTGATCTCACACTTTTTATTTTTTCTGAAAATTCATTA
AATGTGCTCTCTAATCCATATGGTGTAATTATACAAGTAAACGACACTGTTTGTAGTCTTATTT
AATTTGTAAGGTTTGTTTTTAGCGACTTAGCAGGTTACCTGGCCAAACTGTGTATAGAGGGAAA
TCTTGCTTTGGTCTGTGGGTGTGGACTGGTGTGACTTACAGAAGATAAGCAGATGTGGGGCTGT
GTGCGATAGGATAGGTGTTCATGGGCAGCTAAGCGCGTGCCTCTGGCTGTGACCTATGAAGTTT
CTTAATGCTGTACTTACAAATGTGAAGTGTGAGTAGGGTTGGTCTCGGAAAAGATGGTATTTAT
GTATAATATAAACCTTAAGCCACAGGAACTGGCATTTTTCTTAGTGTAAAAATTTAATAAGAAC
CAAATCACAAAAATCCCAGATCTCCTTTTGAGGCCGGGGACAATCAGGCCGTTCGGACAATCAC
CATTCCAGTCCCACCGAGTGCTGAGGCTGGAGAACCACCTCTTAGGTTCTCAAGATGCTGTTGA
TCCTGTTCTTGTATTTTTGTTTTAGTTTTGTAATCTTGAAAAATAACTTAAAGTTGCCAGTGGC
TCATAAGGAGAAATCAATTAAAACCATTCAAAACATAGATCCTTAAATTTCCATGTACTGTCCC
CCTTTTACATTCCTCCATTGACTCGGTTCTTTAGTGTAGTCCCTAGGCCAGCGCTAGCCTAGCA
TTTCAGTAGCCTGTTGGGCTTTTAGGGCTTATAGTGTTAAATTTATGTCGTCTGTACCTCTTCT
ATAACTCAACCTAATTTTTGACTTTGCTTCCTCACTGGCTGTTGTATTTGGTTTCAGGTTTTGT
GTTAACATTTGCCATCCATTGTTGTGTTTTCTTTCATTGTTTGTTGACAGTGATAGCAATGGGT
ATAACTCTCGTACATTTAAATGAAGCTGATGCTACAGAATGTAATGCGAGCCAGTGAACGCCAC
TTGGCGCCAACCGGTGGAAGCTGGCCTCAGGCGCATTCTCTGGAGTTGAAGGATCAACACTCCC
TGTGTCTACAACAAGGAGATACGTCTTCATCATACTGAACTTGGCCTTTTAAGGGAAAAATGCT
TTTCATGAAATTTGCATAATACCATTGTTTTGCAGTGATAAGGCATTTGCATGTTTCTGAGGGC
TGAGTTAAGCTCTTTGGAGTGAAGACTATCAGTGCCGCAGTGATGGGTGCTATCCCCGGGTCTG
CAGTGGTCACAAAGTCTACCGTGTAGTTACTTTCAAGCCTCATTCAGATAATCTTGCTAAGAGC
TGGTCTGCACTCCCCACAGGTGTTTTACTGTCCTCTCTCAACACTGCTTTGAGCCGTGCTCTGT
AAAGTGTAAGTTCTTTGTCCCATCAGTTTACTAGCTGTCATGTGGTTATTGTCTGGGCAAGTCT
TTTGATTTTGTTTTCCTTACAAAGTATGTCCATGACTGTATCAATCTTCTGTATTCAGAACATT
ATAATGCTGCGGCCATTTTTATAGAACGACTGCAAGTTTGTGTCCTGGAAATATCTTCTACTCG
TGTGTGTATGTGAGCTCTGAGACCAGATCTGTTCTGGAAGAGTCCTCAGGTATGCCTGCACATG
ACTGTCTGGGTATCTGGGTAGACGCTAGGGAATTGTGCTTTTAGATGAGGCAGTTGGAAAACCT
GAGCTCCCCTTGCTGTCCGTGTATGTGCCACATCTGGCCTCCACCACTGCGTTTCTTGTGGTTG
TGCTGTTAATGGTAAAGTCAAGTGCCTTCAATGCTAAAGGCTCAGAAATCTTTCTTAAACTGAT
TTCATGTCCTATGCAAGTGTTTTTACAACCTGCATAACCAGTACTTTGTAAAACTTGTTTACGC
TTCAATTGTACATAGTGTTTTTTAAAGAAATATATAGTATTTTTATTTAGGTACCTCCAAACTT
GAATCCGTCTGTGTGAAACACTGTAAACGACACGTTTCTCTTTTGCGTACCATCACAGTTGTAC
AGAGGTTTTCACTGGTTCTATTTTTCTACTGTTACTGATACGCATGTAACACTGACTTTATCCT
CCATATAGTTGGCATTTCAAATAAATGGCTTGTATAGAA

hide sequence

RefSeq Acc Id:

XM_008764821 ⟹ XP_008763043

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	127,710,723 - 127,774,947 (-)	NCBI
mRatBN7.2	6	121,945,909 - 122,010,114 (-)	NCBI
Rnor_6.0	6	126,684,003 - 126,748,496 (-)	NCBI

Sequence:

show sequence

CAGGCGCGCCAGGGCCACGCCGAGGTGAGCCCCTCCTGCTCCCTGTCGGAGTCAAAATGGCGAC
GGGGGGAACCTGGAGTGGTCCCGGAGCCTAAACCACTGACAGGAGAGGGGAGGGCGGCGGCGGC
GGCGGCGGCTGGAGGAGAATGGCCGCGGGGGCTGGCGCCAGTGCGGACGGCGGCGCTGGGGGCG
GCGGCGGCGGAGGCGACGGCAGCGGTCCCAGCAGCAGTCGCGGCGGGAGGAGCCTCCGAGAAAT
GGATGAAAAGAGGCTGCTGGATCCAGGGTTGAAGGTTCGTAAAGGCCTCTGGGATTACCCTCTG
AAGAACCAGCAGATGGAATGCCAGAGTGACTGAAGAAAATGGGTGCTAATGCATCTAACTATCC
TCATTCATGTTCCCCAAGGGTAGGGGGAAATTCACAGGCCCAGCAGACTTTCATAGGAACATCT
TCCTATTCTCAGCAAGGCTATGGTTGTGAGTCAAAGTTGTATAGCCTTGACCACGGCCATGAAA
AACCACAAGACAAAAAAAAGAGAACCTCTGGCCTTGCTACTCTCAAAAAGAAGTTCATTAAACG
TCGAAAATCTAATAGATCGGCTGATCATGCGAAGCAGATGCGAGAACTCCTGTCTGGGTGGGAT
GTTAGAGATGTCAATGCACTAGTGGAAGAATATGAGGGGACTTCAGCCTTAAAGGAGCTTTCTC
TGCAAGCCAGTTTGGCTAGACCAGAAGCTCGGACACTGCAGAAGGACATGGCTGACCTTTATGA
GTATAAGTACTGTACTGATGTGGACTTAATATTTCAAGAAACTTGTTTCCCTGTTCATCGTGCC
ATTTTGGCAGCCAGGTGTCCATTTTTCAAAACACTGCTATCTTCCTCACCTGAGTATGGGGCAG
AGATAATAATGGATATCAGTACAGCTGGTATTGATATGCCCATGTTTTCTGCCTTGTTACACTA
CCTTTATACAGGAGAATTTGGAATGGAGGACTCAAGATTTCAGAATGTCGATATCCTTGTTCAG
CTTAGTGAAGAATTTGGAACACCAAATTCCCTTGATGTAGATATGCGTGGACTCTTTGATTACA
TGTGTTATTATGATGTTGTCCTTAGTTTTTCTTCAGATTCTGAACTAGTTGAAGCTTTTGGTGG
AAATCAGAACTGTTTAGATGAAGAGCTCAAAGCCCACAAGGCTATTATTTCTGCACGGTCCCCA
TTTTTCCGAAATTTATTACAAAGGAGAATACGGACTGGTGAAGAAATCACAGACCGAACTTTGA
GAACTCCTACAAGAATTATATTAGATGAGTCCATTATACCAAAAAAATATGCAAAAGTGATATT
ACACTGTATGTATACCGATGTGGTGGACCTCTCTGTTTTGCACTGCAGCCCCTCTGTGGGGAGT
CTCAGTGAAGTTCAAGCTCTCGTCGCAGGGAAGCCAAACATGACCAGGGCAGAAGAAGCCATGG
AGCTTTACCACATAGCCCTGTTCTTGGAATTTAACATGCTTGCACAAGCCAAATTTGTGAGAAA
ATGCTACTACAGAAAAAATTTGAAGTTTGCCACAGCATCAAAAAGGCTGTGAGGATATCATTGC
TGAGAGCATCTCCTTAGAGACCTTAATTGCTATCCTCAAGTGGAGCTCACA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102190	(Get FASTA)	NCBI Sequence Viewer
	NP_001430874	(Get FASTA)	NCBI Sequence Viewer
	XP_008763040	(Get FASTA)	NCBI Sequence Viewer
	XP_008763041	(Get FASTA)	NCBI Sequence Viewer
	XP_008763043	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL81761	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062323
	ENSRNOP00000062323.2
	ENSRNOP00000074965
	ENSRNOP00000074965.1

RefSeq Acc Id:

NP_001102190 ⟸ NM_001108720

- UniProtKB:

D3ZCW2 (UniProtKB/TrEMBL), A6JEL7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGANASNYPHSCSPRVGGNSQAQQTFIGTSSYSQQGYGCESKLYSLDHGHEKPQDKKKRTSGLA
TLKKKFIKRRKSNRSADHAKQMRELLSGWDVRDVNALVEEYEGTSALKELSLQASLARPEARTL
QKDMADLYEYKYCTDVDLIFQETCFPVHRAILAARCPFFKTLLSSSPEYGAEIIMDISTAGIDM
PMFSALLHYLYTGEFGMEDSRFQNVDILVQLSEEFGTPNSLDVDMRGLFDYMCYYDVVLSFSSD
SELVEAFGGNQNCLDEELKAHKAIISARSPFFRNLLQRRIRTGEEITDRTLRTPTRIILDESII
PKKYAKVILHCMYTDVVDLSVLHCSPSVGSLSEVQALVAGKPNMTRAEEAMELYHIALFLEFNM
LAQGCEDIIAESISLETLIAILKWSSHPYGSKWVHRQALHFLCEELSQVMTSDVFYELSKDHLL
TAIQSDYLQASEQDILKYLIKWGEHQLMKRIADREPNLLSGTAHSVNKRGVKRRDLDMEELREI
LSSLLPFVRIEHILPMNSEVLSDAMKRGLISTPPSDMLPTTEGGKSNAWLRQKNAGIYVRPRLF
SPYVEEAKSVLDEMMVEQTDLVRLRMVRMSNVPDTLYMVSNAMPQCCHMISHQQISSNQSSPPS
VVANEIPVPRLLIMKDMVRRLQELRHTEQVQRAYALNCGEGATVSYEIQIRVLREFGLADAAAE
LLQCPQPVLNDLMPDIAMGVSTLSLKDRRLPELAADTELCQTVSEAGPGPPQHLSCIPQRHTHT
SRKKHTLEQKPDGRESQQEYPDLYDFPNAACRPSTPAPGRRTPSPSRGRYFGPDLYSHNKASPN
GLKSAYLPGQTSPKKQEDTRREYPLSPDGHPHKQKNEPIRLDVVEQPPQRPDFPSAASENASNG
PAHVRARTAVETDLTFGLTPNRPPSHSACSSEVLEERSSRRLTDSESLGHGAQRNADLERDDSI
SRGRRSPSKPDFLYKKSAL

hide sequence

RefSeq Acc Id:	XP_008763041 ⟸ XM_008764819
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K9E3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANASNYPHSCSPRVGGNSQAQQTFIGTSSYSQQGYGCESKLYSLDHGHEKPQDKKKRTSGLA TLKKKFIKRRKSNRSADHAKQMRELLSGWDVRDVNALVEEYEGTSALKELSLQASLARPEARTL QKDMADLYEYKYCTDVDLIFQETCFPVHRAILAARCPFFKTLLSSSPEYGAEIIMDISTAGIDM PMFSALLHYLYTGEFGMEDSRFQNVDILVQLSEEFGTPNSLDVDMRGLFDYMCYYDVVLSFSSD SELVEAFGGNQNCLDEELKAHKAIISARSPFFRNLLQRRIRTGEEITDRTLRTPTRIILDESII PKKYAKVILHCMYTDVVDLSVLHCSPSVGSLSEVQALVAGKPNMTRAEEAMELYHIALFLEFNM LAQGCEDIIAESISLETLIAILKWSSHPYGSKWVHRQALHFLCEELSQVMTSDVFYELSKDHLL TAIQSDYLQASEQDILKYLIKWGEHQLMKRIADREPNLLSGTAHSVNKRGVKRRDLDMEELREI LSSLLPFVRIEHILPMNSEVLSDAMKRGLISTPPSDMLPTTEGGKSNAWLRQKNAGIYVRPRLF SPYVEEAKSVLDEMMVEQTDLVRLRMVRMSNVPDTLYMVSNAMPQCCHMISHQQISSNQSSPPS VVANEIPVPRLLIMKDMVRRLQELRHTEQVQRAYALNCGEGATVSYEIQIRVLREFGLADAAAE LLQNPHKFFPDERFGDESPLLTMRQPGRCRVNSTPTAETMFTDLDSFVAFHPPLPPPPPPYHPP ATPIHNQLKAGWKQRPPSHHPSRSFSYPCNHSLFHSRTAPKPGPPPVYLPGVKVAPPDCTNTTA LGRQTVAAAAAAAAASAAVISEKQVCPQPVLNDLMPDIAMGVSTLSLKDRRLPELAADTELCQT VSEAGPGPPQHLSCIPQRHTHTSRKKHTLEQKPDGRESQQEYPDLYDFPNAACRPSTPAPGRRT PSPSRGRYFGPDLYSHNKASPNGLKSAYLPGQTSPKKQEDTRREYPLSPDGHPHKQKNEPIRLD VVEQPPQRPDFPSAASENASNGPAHVRARTAVETDLTFGLTPNRPPSHSACSSEVLEERSSRRL TDSESLGHGAQRNADLERDDSISRGRRSPSKPDFLYKKSAL hide sequence

RefSeq Acc Id:	XP_008763040 ⟸ XM_008764818
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K9E3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANASNYPHSCSPRVGGNSQAQQTFIGTSSYSQQGYGCESKLYSLDHGHEKPQDKKKRTSGLA TLKKKFIKRRKSNRSADHAKQMRELLSGWDVRDVNALVEEYEGTSALKELSLQASLARPEARTL QKDMADLYEYKYCTDVDLIFQETCFPVHRAILAARCPFFKTLLSSSPEYGAEIIMDISTAGIDM PMFSALLHYLYTGEFGMEDSRFQNVDILVQLSEEFGTPNSLDVDMRGLFDYMCYYDVVLSFSSD SELVEAFGGNQNCLDEELKAHKAIISARSPFFRNLLQRRIRTGEEITDRTLRTPTRIILDESII PKKYAKVILHCMYTDVVDLSVLHCSPSVGSLSEVQALVAGKPNMTRAEEAMELYHIALFLEFNM LAQGCEDIIAESISLETLIAILKWSSHPYGSKWVHRQALHFLCEELSQVMTSDVFYELSKDHLL TAIQSDYLQASEQDILKYLIKWGEHQLMKRIADREPNLLSGTAHSVNKRGVKRRDLDMEELREI LSSLLPFVRIEHILPMNSEVLSDAMKRGLISTPPSDMLPTTEGGKSNAWLRQKNAGIYVRPRLF SPYVEEAKSVLDEMMVEQTDLVRLRMVRMSNVPDTLYMVSNAMPQCCHMISHQQISSNQSSPPS VVANEIPVPRLLIMKDMVRRLQELRHTEQVQRAYALNCGEGATVSYEIQIRVLREFGLADAAAE LLQNPHKFFPDERFGDESPLLTMRQPGRCRVNSTPTAETMFTDLDSFVAFHPPLPPPPPPYHPP ATPIHNQLKAGWKQRPPSHHPSRSFSYPCNHSLFHSRTAPKPGPPPVYLPGVKVAPPDCTNTTA LGRQTVAAAAAAAAASAAVISEKQVCPQPVLNDLMPDIAMGVSTLSLKDRRLPELAADTELCQT VSEAGPGPPQHLSCIPQRHTHTSRKKHTLEQKPDGRESQQEYPDLYDFPNAACRPSTPAPGRRT PSPSRGRYFGPDLYSHNKASPNGLKSAYLPGQTSPKKQEDTRREYPLSPDGHPHKQKNEPIRLD VVEQPPQRPDFPSAASENASNGPAHVRARTAVETDLTFGLTPNRPPSHSACSSEVLEERSSRRL TDSESLGHGAQRNADLERDDSISRGRRSPSKPDFLYKKSAL hide sequence

RefSeq Acc Id:

XP_008763043 ⟸ XM_008764821

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGANASNYPHSCSPRVGGNSQAQQTFIGTSSYSQQGYGCESKLYSLDHGHEKPQDKKKRTSGLA
TLKKKFIKRRKSNRSADHAKQMRELLSGWDVRDVNALVEEYEGTSALKELSLQASLARPEARTL
QKDMADLYEYKYCTDVDLIFQETCFPVHRAILAARCPFFKTLLSSSPEYGAEIIMDISTAGIDM
PMFSALLHYLYTGEFGMEDSRFQNVDILVQLSEEFGTPNSLDVDMRGLFDYMCYYDVVLSFSSD
SELVEAFGGNQNCLDEELKAHKAIISARSPFFRNLLQRRIRTGEEITDRTLRTPTRIILDESII
PKKYAKVILHCMYTDVVDLSVLHCSPSVGSLSEVQALVAGKPNMTRAEEAMELYHIALFLEFNM
LAQAKFVRKCYYRKNLKFATASKRL

hide sequence

Ensembl Acc Id:

ENSRNOP00000074965 ⟸ ENSRNOT00000081127

Ensembl Acc Id:

ENSRNOP00000062323 ⟸ ENSRNOT00000064914

Protein Domains

BTB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K9E3-F1-model_v2	AlphaFold	A0A0G2K9E3	1-1129	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306262	AgrOrtholog
BioCyc Gene	G2FUF-36432	BioCyc
Ensembl Genes	ENSRNOG00000008598	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000064914	ENTREZGENE
	ENSRNOT00000064914.5	UniProtKB/TrEMBL
	ENSRNOT00000081127	ENTREZGENE
	ENSRNOT00000081127.3	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.420	UniProtKB/TrEMBL
	Potassium Channel Kv1.1, Chain A	UniProtKB/TrEMBL
InterPro	BACK	UniProtKB/TrEMBL
	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	Btbd7	UniProtKB/TrEMBL
	BTBD7_BACK	UniProtKB/TrEMBL
	BTBD7_BTB_POZ_first	UniProtKB/TrEMBL
	BTBD7_BTB_POZ_second	UniProtKB/TrEMBL
KEGG Report	rno:362772	UniProtKB/TrEMBL
NCBI Gene	362772	ENTREZGENE
PANTHER	BTB/POZ DOMAIN-CONTAINING PROTEIN 7	UniProtKB/TrEMBL
	PTHR16064	UniProtKB/TrEMBL
Pfam	BACK	UniProtKB/TrEMBL
	BTB	UniProtKB/TrEMBL
PhenoGen	Btbd7	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008598	RatGTEx
SMART	BACK	UniProtKB/TrEMBL
	BTB	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
UniProt	A0A0G2K9E3	ENTREZGENE, UniProtKB/TrEMBL
	A6JEL7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZCW2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Btbd7	BTB domain containing 7	Btbd7	BTB (POZ) domain containing 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Btbd7	BTB (POZ) domain containing 7	Btbd7_predicted	BTB (POZ) domain containing 7 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Btbd7_predicted	BTB (POZ) domain containing 7 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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