Gpr45 (G protein-coupled receptor 45) - Rat Genome Database

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Gene: Gpr45 (G protein-coupled receptor 45) Rattus norvegicus
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Symbol: Gpr45
Name: G protein-coupled receptor 45
RGD ID: 1306253
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Orthologous to human GPR45 (G protein-coupled receptor 45); INTERACTS WITH acrylamide; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC301372; probable G-protein coupled receptor 45
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8952,713,825 - 52,801,826 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl952,783,090 - 52,801,941 (+)EnsemblGRCr8
mRatBN7.2945,221,364 - 45,309,713 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,306,237 - 45,309,706 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx953,799,433 - 53,802,902 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0958,922,234 - 58,925,703 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0957,204,092 - 57,207,561 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0949,837,868 - 49,841,337 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl949,837,868 - 49,841,337 (+)Ensemblrn6Rnor6.0
Rnor_5.0949,424,620 - 49,511,913 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4942,236,809 - 42,240,278 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera943,024,208 - 43,027,677 (+)NCBICelera
RGSC_v3.1942,238,371 - 42,239,587 (+)NCBI
Cytogenetic Map9q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Gpr45
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8952,713,825 - 52,801,826 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl952,783,090 - 52,801,941 (+)EnsemblGRCr8
mRatBN7.2945,221,364 - 45,309,713 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,306,237 - 45,309,706 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx953,799,433 - 53,802,902 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0958,922,234 - 58,925,703 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0957,204,092 - 57,207,561 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0949,837,868 - 49,841,337 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl949,837,868 - 49,841,337 (+)Ensemblrn6Rnor6.0
Rnor_5.0949,424,620 - 49,511,913 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4942,236,809 - 42,240,278 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera943,024,208 - 43,027,677 (+)NCBICelera
RGSC_v3.1942,238,371 - 42,239,587 (+)NCBI
Cytogenetic Map9q22NCBI
GPR45
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382105,241,743 - 105,243,467 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2105,241,743 - 105,243,467 (+)Ensemblhg38GRCh38
GRCh372105,858,200 - 105,859,924 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362105,224,632 - 105,226,356 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342105,316,717 - 105,318,442NCBI
Celera2100,058,695 - 100,060,419 (+)NCBICelera
Cytogenetic Map2q12.1NCBI
HuRef299,627,102 - 99,628,826 (+)NCBIHuRef
CHM1_12105,862,513 - 105,864,237 (+)NCBICHM1_1
T2T-CHM13v2.02105,702,860 - 105,704,584 (+)NCBIT2T-CHM13v2.0
Gpr45
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39142,992,032 - 43,074,611 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl142,992,032 - 43,074,616 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38142,952,872 - 43,035,451 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl142,952,872 - 43,035,456 (+)Ensemblmm10GRCm38
MGSCv37143,009,717 - 43,092,294 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36142,897,509 - 42,979,995 (+)NCBIMGSCv36mm8
Celera143,291,673 - 43,373,768 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map121.88NCBI
Gpr45
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547010,166,182 - 10,167,300 (+)Ensembl
ChiLan1.0NW_00495547010,166,164 - 10,169,031 (+)NCBIChiLan1.0ChiLan1.0
GPR45
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21222,471,146 - 22,569,465 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A22,473,027 - 22,572,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A96,582,250 - 96,681,444 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A106,330,296 - 106,333,824 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A106,330,536 - 106,331,654 (+)EnsemblpanPan2panpan1.1
GPR45
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11038,170,264 - 38,175,520 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1038,173,418 - 38,174,539 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1038,098,198 - 38,099,805 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01039,029,506 - 39,031,113 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1039,029,766 - 39,030,887 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11038,753,426 - 38,755,033 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01039,032,917 - 39,034,524 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01039,224,580 - 39,226,187 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gpr45
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629287,336,113 - 87,435,457 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936764761,204 - 762,322 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936764760,981 - 762,548 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR45
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl349,532,215 - 49,535,946 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1349,531,595 - 49,536,036 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2351,783,792 - 51,785,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103241182
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1148,790,645 - 8,880,509 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl148,878,021 - 8,879,139 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041176,489,401 - 176,510,151 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpr45
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247499,340,448 - 9,373,627 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247499,319,475 - 9,373,631 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Gpr45
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14119,182,093 - 119,188,202 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gpr45
422 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:487
Count of miRNA genes:256
Interacting mature miRNAs:335
Transcripts:ENSRNOT00000021999
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat

Markers in Region
RH132262  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2945,309,271 - 45,309,460 (+)MAPPERmRatBN7.2
Rnor_6.0949,840,903 - 49,841,091NCBIRnor6.0
Rnor_5.0949,511,477 - 49,511,665UniSTSRnor5.0
RGSC_v3.4942,239,844 - 42,240,032UniSTSRGSC3.4
Celera943,027,243 - 43,027,431UniSTS
Cytogenetic Map9q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 1 28 142 32 29 19 72 19 2 203 116 11 130 59 56 10 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000021999   ⟹   ENSRNOP00000021999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl952,797,663 - 52,801,817 (+)Ensembl
mRatBN7.2 Ensembl945,306,237 - 45,309,706 (+)Ensembl
Rnor_6.0 Ensembl949,837,868 - 49,841,337 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000121198   ⟹   ENSRNOP00000109128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl952,798,350 - 52,801,941 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000149551   ⟹   ENSRNOP00000102983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl952,798,350 - 52,801,941 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000152215   ⟹   ENSRNOP00000112492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl952,793,043 - 52,801,941 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000165041   ⟹   ENSRNOP00000100561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl952,796,971 - 52,801,734 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000168330   ⟹   ENSRNOP00000105874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl952,783,090 - 52,799,631 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000168368   ⟹   ENSRNOP00000109803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl952,798,350 - 52,801,941 (+)Ensembl
RefSeq Acc Id: NM_001106906   ⟹   NP_001100376
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8952,798,350 - 52,801,819 (+)NCBI
mRatBN7.2945,306,237 - 45,309,706 (+)NCBI
Rnor_6.0949,837,868 - 49,841,337 (+)NCBI
Rnor_5.0949,424,620 - 49,511,913 (+)NCBI
RGSC_v3.4942,236,809 - 42,240,278 (+)RGD
Celera943,024,208 - 43,027,677 (+)RGD
Sequence:
RefSeq Acc Id: XM_039083259   ⟹   XP_038939187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8952,713,861 - 52,801,826 (+)NCBI
mRatBN7.2945,221,364 - 45,309,713 (+)NCBI
RefSeq Acc Id: XR_005488869
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8952,713,825 - 52,716,307 (+)NCBI
mRatBN7.2945,221,666 - 45,223,417 (+)NCBI
RefSeq Acc Id: NP_001100376   ⟸   NM_001106906
- UniProtKB: D4A8X5 (UniProtKB/TrEMBL),   A6INQ8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021999   ⟸   ENSRNOT00000021999
RefSeq Acc Id: XP_038939187   ⟸   XM_039083259
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000102983   ⟸   ENSRNOT00000149551
Ensembl Acc Id: ENSRNOP00000109803   ⟸   ENSRNOT00000168368
Ensembl Acc Id: ENSRNOP00000112492   ⟸   ENSRNOT00000152215
Ensembl Acc Id: ENSRNOP00000100561   ⟸   ENSRNOT00000165041
Ensembl Acc Id: ENSRNOP00000105874   ⟸   ENSRNOT00000168330
Ensembl Acc Id: ENSRNOP00000109128   ⟸   ENSRNOT00000121198
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A8X5-F1-model_v2 AlphaFold D4A8X5 1-373 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306253 AgrOrtholog
BioCyc Gene G2FUF-27677 BioCyc
Ensembl Genes ENSRNOG00000016446 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021999.7 UniProtKB/TrEMBL
  ENSRNOT00000121198.1 UniProtKB/TrEMBL
  ENSRNOT00000149551 ENTREZGENE
  ENSRNOT00000149551.1 UniProtKB/TrEMBL
  ENSRNOT00000152215.1 UniProtKB/TrEMBL
  ENSRNOT00000165041.1 UniProtKB/TrEMBL
  ENSRNOT00000168330.1 UniProtKB/TrEMBL
  ENSRNOT00000168368.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPC_Orphan_Receptors UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
KEGG Report rno:301372 UniProtKB/TrEMBL
NCBI Gene 301372 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  G-PROTEIN COUPLED RECEPTOR 45-RELATED UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PhenoGen Gpr45 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016446 RatGTEx
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0ABK0LY82_RAT UniProtKB/TrEMBL
  A6INQ8 ENTREZGENE, UniProtKB/TrEMBL
  D4A8X5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Gpr45  G protein-coupled receptor 45   Gpr45_predicted  G protein-coupled receptor 45 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Gpr45_predicted  G protein-coupled receptor 45 (predicted)      Symbol and Name status set to approved 70820 APPROVED