Advanced Search (OLGA)

Gene: Arfgap2 (ARF GTPase activating protein 2) Rattus norvegicus

Analyze

Symbol:

Arfgap2

Name:

ARF GTPase activating protein 2 (Ensembl:ADP-ribosylation factor GTPase activating protein 2)

RGD ID:

1306177

Description:

Predicted to enable GTPase activator activity. Predicted to be involved in COPI coating of Golgi vesicle. Predicted to be located in Golgi membrane. Orthologous to human ARFGAP2 (ARF GTPase activating protein 2); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 6-propyl-2-thiouracil; amitrole; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ADP-ribosylation factor GTPase activating protein 2; ADP-ribosylation factor GTPase-activating protein 2; ARF GAP 2; GTPase-activating protein ZNF289; LOC362162; MGC124884; Zfp289; zinc finger protein 289

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARFGAP2 (ARF GTPase activating protein 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Arfgap2 (ARF GTPase activating protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arfgap2 (ARF GTPase activating protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARFGAP2 (ARF GTPase activating protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARFGAP2 (ADP ribosylation factor GTPase activating protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arfgap2 (ARF GTPase activating protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARFGAP2 (ADP ribosylation factor GTPase activating protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARFGAP2 (ARF GTPase activating protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arfgap2 (ARF GTPase activating protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Arfgap2 (ARF GTPase activating protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ARFGAP2 (ARF GTPase activating protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arfgap2 (ARF GTPase activating protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arfgap2 (ADP-ribosylation factor GTPase activating protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ArfGAP3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F07F6.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GLO3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arfgap2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arfgap2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	97,692,105 - 97,704,246 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	97,692,110 - 97,704,247 (+)	Ensembl				GRCr8
mRatBN7.2	3	77,236,305 - 77,248,445 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	77,236,322 - 77,248,455 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	80,714,617 - 80,726,606 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	89,313,632 - 89,325,628 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	87,164,775 - 87,176,781 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	80,081,541 - 80,093,659 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	80,081,647 - 80,093,658 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	86,790,321 - 86,802,360 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	75,620,198 - 75,633,343 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	76,443,121 - 76,455,093 (+)	NCBI		Celera
RGSC_v3.1	3	75,516,566 - 75,529,718 (+)	NCBI
Cytogenetic Map	3	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Disease Progression (ISO)

Stomach Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1-Hydroxypyrene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (ISO)

alpha-pinene (ISO)

amitrole (EXP)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Brodifacoum (EXP)

caffeine (ISO)

CGP 52608 (ISO)

crocidolite asbestos (ISO)

dextran sulfate (ISO)

Dibutyl phosphate (ISO)

elemental selenium (ISO)

ethanol (ISO)

Evodiamine (ISO)

FR900359 (ISO)

gentamycin (EXP)

ivermectin (ISO)

lead diacetate (ISO)

methimazole (EXP)

ochratoxin A (EXP)

ozone (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

progesterone (ISO)

resveratrol (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

COPI coating of Golgi vesicle (IBA)

protein transport (IEA)

vesicle-mediated transport (IEA)

Cellular Component

cytoplasm (IEA)

Golgi apparatus (IEA,ISO)

Golgi membrane (IEA)

Molecular Function

GTPase activator activity (IBA,IEA)

metal ion binding (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

endocytosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:19015319

Genomics

Comparative Map Data

Arfgap2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	97,692,105 - 97,704,246 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	97,692,110 - 97,704,247 (+)	Ensembl				GRCr8
mRatBN7.2	3	77,236,305 - 77,248,445 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	77,236,322 - 77,248,455 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	80,714,617 - 80,726,606 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	89,313,632 - 89,325,628 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	87,164,775 - 87,176,781 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	80,081,541 - 80,093,659 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	80,081,647 - 80,093,658 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	86,790,321 - 86,802,360 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	75,620,198 - 75,633,343 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	76,443,121 - 76,455,093 (+)	NCBI		Celera
RGSC_v3.1	3	75,516,566 - 75,529,718 (+)	NCBI
Cytogenetic Map	3	q24	NCBI

ARFGAP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	47,164,301 - 47,176,879 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	47,164,299 - 47,177,474 (-)	Ensembl			hg38	GRCh38
GRCh37	11	47,185,852 - 47,198,430 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	47,142,428 - 47,154,995 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	47,142,427 - 47,154,995	NCBI
Celera	11	47,325,090 - 47,337,647 (-)	NCBI		Celera
Cytogenetic Map	11	p11.2	NCBI
HuRef	11	46,884,835 - 46,897,652 (-)	NCBI		HuRef
CHM1_1	11	47,184,554 - 47,197,410 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	47,321,070 - 47,333,633 (-)	NCBI		T2T-CHM13v2.0

Arfgap2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	91,095,460 - 91,107,716 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	91,095,319 - 91,107,276 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	91,265,115 - 91,277,371 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	91,264,974 - 91,276,931 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	91,105,272 - 91,117,528 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	91,066,145 - 91,077,770 (+)	NCBI		MGSCv36	mm8
Celera	2	92,650,576 - 92,662,831 (+)	NCBI		Celera
Cytogenetic Map	2	E1	NCBI
cM Map	2	50.62	NCBI

Arfgap2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	995,672 - 1,006,008 (+)	Ensembl
ChiLan1.0	NW_004955422	995,672 - 1,006,008 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARFGAP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	49,364,416 - 49,377,206 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	49,384,222 - 49,396,557 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	47,109,678 - 47,122,015 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	47,663,397 - 47,676,063 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	47,663,397 - 47,676,063 (-)	Ensembl			panPan2	panpan1.1

ARFGAP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	42,399,743 - 42,410,044 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	42,399,815 - 42,409,382 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	41,128,440 - 41,138,862 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	43,053,990 - 43,064,427 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	43,054,014 - 43,064,454 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	42,540,299 - 42,550,728 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	42,095,239 - 42,105,661 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	42,825,149 - 42,835,577 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Arfgap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	19,884,505 - 19,894,278 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936562	1,996,000 - 2,006,554 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936562	1,996,000 - 2,005,850 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARFGAP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	15,390,415 - 15,401,227 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	15,390,547 - 15,401,230 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	16,614,130 - 16,624,788 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARFGAP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	18,136,257 - 18,161,083 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	18,136,519 - 18,148,228 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	115,437,617 - 115,450,127 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arfgap2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	1,513,146 - 1,523,660 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624767	1,513,088 - 1,523,495 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Arfgap2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	65,426,867 - 65,438,814 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Arfgap2
61 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	746
Count of miRNA genes:	294
Interacting mature miRNAs:	393
Transcripts:	ENSRNOT00000057161
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	73592611	110333156	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	53651826	98651826	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	58925062	103925062	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

AW413130

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	77,235,452 - 77,235,539 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	80,080,691 - 80,080,777	NCBI	Rnor6.0
Rnor_5.0	3	86,789,444 - 86,789,530	UniSTS	Rnor5.0
RGSC_v3.4	3	75,619,242 - 75,619,328	UniSTS	RGSC3.4
Celera	3	76,442,165 - 76,442,251	UniSTS
Cytogenetic Map	3	q24	UniSTS

RH128846

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	77,235,522 - 77,235,727 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	80,080,761 - 80,080,965	NCBI	Rnor6.0
Rnor_5.0	3	86,789,514 - 86,789,718	UniSTS	Rnor5.0
RGSC_v3.4	3	75,619,312 - 75,619,516	UniSTS	RGSC3.4
Celera	3	76,442,235 - 76,442,439	UniSTS
Cytogenetic Map	3	q24	UniSTS

RH10546

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	77,248,384 - 77,248,582 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	80,093,599 - 80,093,796	NCBI	Rnor6.0
Rnor_5.0	3	86,802,290 - 86,802,487	UniSTS	Rnor5.0
RGSC_v3.4	3	75,633,283 - 75,633,480	UniSTS	RGSC3.4
Celera	3	76,455,033 - 76,455,230	UniSTS
Cytogenetic Map	3	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC101917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000057161 ⟹ ENSRNOP00000053988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	97,692,110 - 97,704,245 (+)	Ensembl
mRatBN7.2 Ensembl	3	77,236,322 - 77,248,441 (+)	Ensembl
Rnor_6.0 Ensembl	3	80,081,647 - 80,093,658 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099467 ⟹ ENSRNOP00000091470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	97,692,110 - 97,703,188 (+)	Ensembl
mRatBN7.2 Ensembl	3	77,236,352 - 77,248,455 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117465 ⟹ ENSRNOP00000088256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	97,692,200 - 97,704,247 (+)	Ensembl
mRatBN7.2 Ensembl	3	77,236,322 - 77,248,441 (+)	Ensembl

RefSeq Acc Id:

NM_001033707 ⟹ NP_001028879

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	97,692,212 - 97,704,246 (+)	NCBI
mRatBN7.2	3	77,236,409 - 77,248,445 (+)	NCBI
Rnor_6.0	3	80,081,647 - 80,093,659 (+)	NCBI
Rnor_5.0	3	86,790,321 - 86,802,360 (+)	NCBI
RGSC_v3.4	3	75,620,198 - 75,633,343 (+)	RGD
Celera	3	76,443,121 - 76,455,093 (+)	RGD

Sequence:

show sequence

CCCGCGCCGGGACCTGTCGGTCGGGGTTGTGTCTGGGAAGGAGAGAAAATGGCGGCGGGCCCGA
GCAAGAGCGAAATCCAGACTCTTTTTAAGAGGCTTCGCGCAATTCCCACCAACAAGGCCTGTTT
CGATTGTGGAGCCAAGAGTCCTAGTTGGGCCAGCATCACGTATGGTGTATTTTTGTGTATTGAC
TGCTCTGGAGTGCATCGCTCCTTGGGTGTTCATCTCAGCTTTATCAGGTCCACAGAGTTGGATT
CGAACTGGAGCTGGTTGCAGCTGAGGTGTATGCAGGTCGGCGGGAATGCCAATGCGACTGCTTT
TTTCCGCCAACATGGATGTCTGGCCAATGATGCTAACACCAAATATAACAGCCGAGCTGCCCAG
ATGTACCGAGAGAAGATCAGGCAGTTAGGGAGTACAGCTCTGGCTAGGCACGGCACTGATCTTT
GGATAGACAATATGAACAGTGCTCCTAGTCACTCTCCAGAGAAGAAAGACTCTGATTTCTTCAC
AGAGCATACTCAGGCCCCTGCTTGGGATACAGCAGCCACGGATCCTTCAGGGACCCAGCAACCA
GCCCTACCTTCAGAGAGCAGTAGCCTGGCGCAACCTGAACCTGGCCCCAACACTGATCTGCTTG
GAACCTCACCCCAAGCCTCTCTGGAACTGAAAAGCTCCATTATTGGCAAGAAGAAGCCAGCAGC
AGCTAAGAAAGGGCTGGGTGCCAAGAAAGGCCTGGGAGCTCAGAAGGTGAGCAACCAGAGCTTT
ACTGAGATTGAGCGGCAGGCCCAGGTGGCAGAGAAGCTCCGAGAGCAGCAGGCAGCTGATGCCA
AGAAGCAGGCAGAAGAGTCCATGGTTGCCTCCATGCGTCTGGCCTACCAGGAGCTCCAGATTGA
TCGCAAGAAGGAGGAGAAAAAGCTACAGAACCTTGAAGGAAAGAAACGAGAGCAGGCTGAAAGG
CTGGGCATGGGCTTGGTGTCCCGAAGCTCCATCTCCCACTCTGTGCTGTCTGAGATGCAGATGA
TTGAGCAGGAAACCCCGCTGAGTGCAAAATCTTCCCGTTCACAACTTGACTTGTTTGATGATGT
TGGAACATTTGCTTCTGGACCCCCAAAGTACAAGGATAACCCCTTTTCTTTGGGAGAAACTTTT
GGTTCCCGCTGGGATTCAGATGCAGCCTGGGGTATGGACAGGGTAGAAGAGAAGGAACCTGAAG
TTACCATCTCCAGCATCCGGCCTATTTCAGAAAGAACCACAAGTCGGAGGGAAGTGGAGAGTCG
GATCTCAGGTCTTGAGTCCAGTGAAGCACGTCAGAAGTTCGCAGGAGCCAAAGCCATCTCGTCT
GACATGTTCTTTGGTCGAGAGGTGGACTCTGAGTATGAAGCCAGGTCTCGGTTACAGCAGCTTT
CGGGCAGCAGTGCCATCAGCTCTTCAGACCTTTTTGGGGATGTGGATGGAGCTCATGGAGGAGG
AACTGTATCTCTGGGGAATGTACTTCCTACAGCTGACATTGCCCAGTTTAAGCAGGGTGTCAAG
TCTGTGGCTGGCAAGATGGCTGTGCTGGCCAATGGTGTAATGAATTCTTTACAGGATCGCTACG
GTTCCTACTGATCCAGGCTCCATGGCTCAGGCCTGTGGTGGTGACAGCAAGAACCCTGATTCCC
AGGCCAGAGATGCCTATCTTGTGGATCTGGGGATTTTGACTTTGTGTGTGTGGTGTGTGAGTTG
GATGAGTTGGGGGATCTTGGCAAGGGGAATGGTCAGCATCAGCCCTTGTCCTCAGCCTGTGCTT
TGAGTCCTTGTCCCCATCCCTCACACTTTCCCTCCATGCTAGTGTCCTTCCCTCTGGTCTTGCC
CCAAAGCTGCTGCTGCTTGGCCTGCTGTACTGGGAGTGAGGGGAGGAGTCCATCAGGATGGCTT
TATGGGTCTAGTTCTCCCCACGAGGGAAGGCCTAAGGCTTTGCAGGCTCTAGGATCCTTGTAGG
TGGTTTGAGGGCTTGGGCCTCCATCTTCTGGAGGCAGGGGAGGCCTAGCAAGAGTTGTGCTGTA
TCAGCCCTTGCGGGGAAGTTATGGATTTGCCACTGCTGTTCCTGTCAGTGGCCTCTTCTGGGTT
CCAGGGAAGGATGGATTAGGAGAAGGACCCTGGTAGCTCACTAAGAGCTAGAACTTTTGCTTGG
TACCTGAAGGTTTTATTTGGGATCAGCCTGGAGGCCTGAGCAATCTTCCGTTGTCACAGCTGTC
CCTTGGAGGCTGACTTCTGCCTGGGTGTTTGAGAGCCTTTACCTACCATTCCTGTGGATCACAG
CACCCTCTGTCTATGCTTGAGGTCCTCTCTTTTTGTGTCCTGCTTGGCCCCATGGTGAGTCTCA
CCTGTGTCCTGCCTGGATGCTGTGAACCTATTAGCTGAGAAAGCTGAGACTCTGAGAGAAAGAA
GCCCCTGGAGCTCAGCTTTTATCCTCTGCATCATCCTGGGTTTAGGGGTCCTGGACAGCACCCC
ATCAACCAGTGAGAGCTTGAGGACCTGCAGCTGCAGGCTCCAAACACTGGCAGCTGGGCCATGC
ACTGTGTCATCCTTGGTGCCATCTCACCCTGCCACGCTGGCAGTCTGGGCCCAACCTCTACCTG
TGGCTTGCAGGTTGGGCTCCCAAACAACGACCACTCTTCCCTCATCCCTCCCCAGAGGGACATG
ACTTTCTTTCAGCACTGTTTGTATTGAAACAAAGTGGTGTCAAAATAAAGCCCCCACGGGGCCC
TGCGGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006234530 ⟹ XP_006234592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	97,692,105 - 97,704,246 (+)	NCBI
mRatBN7.2	3	77,236,305 - 77,248,445 (+)	NCBI
Rnor_6.0	3	80,081,541 - 80,093,659 (+)	NCBI
Rnor_5.0	3	86,790,321 - 86,802,360 (+)	NCBI

Sequence:

show sequence

GCCCGACGTTCATTGGCCCAGATATGGTCGAATCACTCTACTCGTAGGCGGGTCAGGGCATTGT
CGGGACCGGCGCGGTTAGCCTCCCTTCGCCGTCAAGGATTGGCCCGCGCCGGGACCTGTCGGTC
GGGGTTGTGTCTGGGAAGAAGAGAAAATGGCGGCGGGCCCGAGCAAGAGCGAAATCCAGACTCT
TTTTAAGAGGCTTCGCGCAATTCCCACCAACAAGGCCTGTTTCGATTGTGGAGCCAAGAGTCCT
AGTTGGGCCAGCATCACGTATGGTGTATTTTTGTGTATTGACTGCTCTGGAGTGCATCGCTCCT
TGGGTGTTCATCTCAGCTTTATCAGGTCCACAGAGTTGGATTCGAACTGGAGCTGGTTGCAGCT
GAGGTGTATGCAGGTCGGCGGGAATGCCAATGCGACTGCTTTTTTCCGCCAACATGGATGTCTG
GCCAATGATGCTAACACCAAATATAACAGCCGAGCTGCCCAGATGTACCGAGAGAAGATCAGGC
AGTTAGGGAGTACAGCTCTGGCTAGGCACGGCACTGATCTTTGGATAGACAATATGAACAGTGC
TCCTAGTCACTCTCCAGAGAAGAAAGACTCTGATTTCTTCACAGAGCATACTCAGGCCCCTGCT
TGGGATACAGCAGCCACGGATCCTTCAGGGACCCAGCAACCAGCCCTACCTTCAGAGAGCAGTA
GCCTGGCGCAACCTGAACCTGGCCCCAACACTGATCTGCTTGGAACCTCACCCCAAGCCTCTCT
GGAATCCATGTATCTGTCAGCTAAAGGGCTCTCTTCTACCAGAGAACTGAAAAGCTCCATTATT
GGCAAGAAGAAGCCAGCAGCAGCTAAGAAAGGGCTGGGTGCCAAGAAAGGCCTGGGAGCTCAGA
AGGTGAGCAACCAGAGCTTTACTGAGATTGAGCGGCAGGCCCAGGTGGCAGAGAAGCTCCGAGA
GCAGCAGGCAGCTGATGCCAAGAAGCAGGCAGAAGAGTCCATGGTTGCCTCCATGCGTCTGGCC
TACCAGGAGCTCCAGATTGATCGCAAGAAGGAGGAGAAAAAGCTACAGAACCTTGAAGGAAAGA
AACGAGAGCAGGCTGAAAGGCTGGGCATGGGCTTGGTGTCCCGAAGCTCCATCTCCCACTCTGT
GCTGTCTGAGATGCAGATGATTGAGCAGGAAACCCCGCTGAGTGCAAAATCTTCCCGTTCACAA
CTTGACTTGTTTGATGATGTTGGAACATTTGCTTCTGGACCCCCAAAGTACAAGGATAACCCCT
TTTCTTTGGGAGAAACTTTTGGTTCCCGCTGGGATTCAGATGCAGCCTGGGGTATGGACAGGGT
AGAAGAGAAGGAACCTGAAGTTACCATCTCCAGCATCCGGCCTATTTCAGAAAGAACCACAAGT
CGGAGGGAAGTGGAGAGTCGGATCTCAGGTCTTGAGTCCAGTGAAGCACGTCAGAAGTTCGCAG
GAGCCAAAGCCATCTCGTCTGACATGTTCTTTGGTCGAGAGGTGGACTCTGAGTATGAAGCCAG
GTCTCGGTTACAGCAGCTTTCGGGCAGCAGTGCCATCAGCTCTTCAGACCTTTTTGGGGATGTG
GATGGAGCTCATGGAGGAGGAACTGTATCTCTGGGGAATGTACTTCCTACAGCTGACATTGCCC
AGTTTAAGCAGGGTGTCAAGTCTGTGGCTGGCAAGATGGCTGTGCTGGCCAATGGTGTGATGAA
TTCTTTACAGGATCGCTACGGTTCCTACTGATCCAGGCTCCATGGCTCAGGCCTGTGGTGGTGA
CAGCAAGAACCCTGATTCCCAGGCCAGAGATGCCTATCTTGTGGATCTGGGGATTTTGACTTTG
TGTGTGTGGTGTGTGAGTTGGATGAGTTGGGGGATCTTGGCAAGGGGAATGGTCAGCATCAGCC
CTTGTCCTCAGCCTGTGCTTTGAGTCCTTGTCCCCATCCCTCACACTTTCCCTCCATGCTAGTG
TCCTTCCCTCTGGTCTTGCCCCAAAGCTGCTGCTGCTTGGCCTGCTGTACTGGGAGTGAGGGGA
GGAGTCCATCAGGATGGCTTTATGGGTCTAGTTCTCCCCACGAGGGAAGGCCTAAGGCTTTGCA
GGCTCTAGGATCCTTGTAGGTGGTTTGAGGGCTTGGGCCTCCATCTTCTGGAGGCAGGGGAGGC
CTAGCAAGAGTTGTGCTGTATCAGCCCTTGAGGGGAAGTTATGGATTTGCCACTGCTGTTCCTG
TCAGTGGCCTCTTCTGGGTTCCAGGGAAGGATGGATTAGGAGAAGGACCCTGGTAGCTCACTAA
GAGCTAGAACTTTTGCTTGGTACCTGAAGGTTTTATTTGGGATCAGCCTGGAGGCCTGAGCAAT
CTTCCGTTGTCACAGCTGTCCCTTGGAGGCTGACTTCTGCCTGGGTGTTTGAGAGCCTTTACCT
ACCATTCCTGTGGATCACAGCACCCTCTGTCTATGCTTGAGGTCCTCTCTTTTTGTGTCCTGCT
TGGCCCCATGGTGAGTCTCACCTGTGTCCTGCCTGGATGCTGTGAACCTATTAGCTGAGAAAGC
TGAGACTCTGAGAGAAAGAAGCCCCTGGAGCTCAGCTTTTATCCTCTGCATCATCCTGGGTTTA
GGGGTCCTGGACAGCACCCCATCAACCAGTGAGAGCTTGAGGACCTGCAGCTGCAGGCTCCAAA
CACTGGCAGCTGGGCCATGCACTGTGTCATCCTTGGTGCCATCTCACCCTGCCACGCTGGCAGT
CTGGGCCCAACCTCTACCTGTGGCTTGCAGGTTGGGCTCCCAAACAACGACCACTCTTCCCTCA
TCCCTCCCCAGAGGGACATGACTTTCTTTCAGCACTGTTTGTATTGAAACAAAGTGGTGTCAAA
ATAAAGCCCCCACGGGGCCCTGCGGGTCA

hide sequence

RefSeq Acc Id:

XM_006234531 ⟹ XP_006234593

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	97,692,105 - 97,704,246 (+)	NCBI
mRatBN7.2	3	77,236,305 - 77,248,445 (+)	NCBI
Rnor_6.0	3	80,081,542 - 80,093,659 (+)	NCBI
Rnor_5.0	3	86,790,321 - 86,802,360 (+)	NCBI

Sequence:

show sequence

CCCGACGTTCATTGGCCCAGATATGGTCGAATCACTCTACTCGTAGGCGGGTCAGGGCATTGTC
GGGACCGGCGCGGTTAGCCTCCCTTCGCCGTCAAGGATTGGCCCGCGCCGGGACCTGTCGGTCG
GGGTTGTGTCTGGGAAGAAGAGAAAATGGCGGCGGGCCCGAGCAAGAGCGAAATCCAGACTCTT
TTTAAGAGGCTTCGCGCAATTCCCACCAACAAGGCCTGTTTCGATTGTGGAGCCAAGAGTCCTA
GTTGGGCCAGCATCACGTATGGTGTATTTTTGTGTATTGACTGCTCTGGAGTGCATCGCTCCTT
GGGTGTTCATCTCAGCTTTATCAGGTCCACAGAGTTGGATTCGAACTGGAGCTGGTTGCAGCTG
AGGTGTATGCAGGTCGGCGGGAATGCCAATGCGACTGCTTTTTTCCGCCAACATGGATGTCTGG
CCAATGATGCTAACACCAAATATAACAGCCGAGCTGCCCAGATGTACCGAGAGAAGATCAGGCA
GTTAGGGAGTACAGCTCTGGCTAGGCACGGCACTGATCTTTGGATAGACAATATGAACAGTGCT
CCTAGTCACTCTCCAGAGAAGAAAGACTCTGATTTCTTCACAGAGCATACTCAGGCCCCTGCTT
GGGATACAGCAGCCACGGATCCTTCAGGGACCCAGCAACCAGCCCTACCTTCAGAGAGCAGTAG
CCTGGCGCAACCTGAACCTGGCCCCAACACTGATCTGCTTGGAACCTCACCCCAAGCCTCTCTG
GCTCATGCTCACCTTCTTCCTCACACAGAACTGAAAAGCTCCATTATTGGCAAGAAGAAGCCAG
CAGCAGCTAAGAAAGGGCTGGGTGCCAAGAAAGGCCTGGGAGCTCAGAAGGTGAGCAACCAGAG
CTTTACTGAGATTGAGCGGCAGGCCCAGGTGGCAGAGAAGCTCCGAGAGCAGCAGGCAGCTGAT
GCCAAGAAGCAGGCAGAAGAGTCCATGGTTGCCTCCATGCGTCTGGCCTACCAGGAGCTCCAGA
TTGATCGCAAGAAGGAGGAGAAAAAGCTACAGAACCTTGAAGGAAAGAAACGAGAGCAGGCTGA
AAGGCTGGGCATGGGCTTGGTGTCCCGAAGCTCCATCTCCCACTCTGTGCTGTCTGAGATGCAG
ATGATTGAGCAGGAAACCCCGCTGAGTGCAAAATCTTCCCGTTCACAACTTGACTTGTTTGATG
ATGTTGGAACATTTGCTTCTGGACCCCCAAAGTACAAGGATAACCCCTTTTCTTTGGGAGAAAC
TTTTGGTTCCCGCTGGGATTCAGATGCAGCCTGGGGTATGGACAGGGTAGAAGAGAAGGAACCT
GAAGTTACCATCTCCAGCATCCGGCCTATTTCAGAAAGAACCACAAGTCGGAGGGAAGTGGAGA
GTCGGATCTCAGGTCTTGAGTCCAGTGAAGCACGTCAGAAGTTCGCAGGAGCCAAAGCCATCTC
GTCTGACATGTTCTTTGGTCGAGAGGTGGACTCTGAGTATGAAGCCAGGTCTCGGTTACAGCAG
CTTTCGGGCAGCAGTGCCATCAGCTCTTCAGACCTTTTTGGGGATGTGGATGGAGCTCATGGAG
GAGGAACTGTATCTCTGGGGAATGTACTTCCTACAGCTGACATTGCCCAGTTTAAGCAGGGTGT
CAAGTCTGTGGCTGGCAAGATGGCTGTGCTGGCCAATGGTGTGATGAATTCTTTACAGGATCGC
TACGGTTCCTACTGATCCAGGCTCCATGGCTCAGGCCTGTGGTGGTGACAGCAAGAACCCTGAT
TCCCAGGCCAGAGATGCCTATCTTGTGGATCTGGGGATTTTGACTTTGTGTGTGTGGTGTGTGA
GTTGGATGAGTTGGGGGATCTTGGCAAGGGGAATGGTCAGCATCAGCCCTTGTCCTCAGCCTGT
GCTTTGAGTCCTTGTCCCCATCCCTCACACTTTCCCTCCATGCTAGTGTCCTTCCCTCTGGTCT
TGCCCCAAAGCTGCTGCTGCTTGGCCTGCTGTACTGGGAGTGAGGGGAGGAGTCCATCAGGATG
GCTTTATGGGTCTAGTTCTCCCCACGAGGGAAGGCCTAAGGCTTTGCAGGCTCTAGGATCCTTG
TAGGTGGTTTGAGGGCTTGGGCCTCCATCTTCTGGAGGCAGGGGAGGCCTAGCAAGAGTTGTGC
TGTATCAGCCCTTGAGGGGAAGTTATGGATTTGCCACTGCTGTTCCTGTCAGTGGCCTCTTCTG
GGTTCCAGGGAAGGATGGATTAGGAGAAGGACCCTGGTAGCTCACTAAGAGCTAGAACTTTTGC
TTGGTACCTGAAGGTTTTATTTGGGATCAGCCTGGAGGCCTGAGCAATCTTCCGTTGTCACAGC
TGTCCCTTGGAGGCTGACTTCTGCCTGGGTGTTTGAGAGCCTTTACCTACCATTCCTGTGGATC
ACAGCACCCTCTGTCTATGCTTGAGGTCCTCTCTTTTTGTGTCCTGCTTGGCCCCATGGTGAGT
CTCACCTGTGTCCTGCCTGGATGCTGTGAACCTATTAGCTGAGAAAGCTGAGACTCTGAGAGAA
AGAAGCCCCTGGAGCTCAGCTTTTATCCTCTGCATCATCCTGGGTTTAGGGGTCCTGGACAGCA
CCCCATCAACCAGTGAGAGCTTGAGGACCTGCAGCTGCAGGCTCCAAACACTGGCAGCTGGGCC
ATGCACTGTGTCATCCTTGGTGCCATCTCACCCTGCCACGCTGGCAGTCTGGGCCCAACCTCTA
CCTGTGGCTTGCAGGTTGGGCTCCCAAACAACGACCACTCTTCCCTCATCCCTCCCCAGAGGGA
CATGACTTTCTTTCAGCACTGTTTGTATTGAAACAAAGTGGTGTCAAAATAAAGCCCCCACGGG
GCCCTGCGGGTCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001028879	(Get FASTA)	NCBI Sequence Viewer
	XP_006234592	(Get FASTA)	NCBI Sequence Viewer
	XP_006234593	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI01918	(Get FASTA)	NCBI Sequence Viewer
	EDL79523	(Get FASTA)	NCBI Sequence Viewer
	EDL79524	(Get FASTA)	NCBI Sequence Viewer
	EDL79525	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053988
	ENSRNOP00000053988.2
	ENSRNOP00000088256
GenBank Protein	Q3MID3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001028879 ⟸ NM_001033707

- UniProtKB:

Q3MID3 (UniProtKB/Swiss-Prot), A6HNC3 (UniProtKB/TrEMBL), A0A8I6A5U9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAGPSKSEIQTLFKRLRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIR
STELDSNWSWLQLRCMQVGGNANATAFFRQHGCLANDANTKYNSRAAQMYREKIRQLGSTALAR
HGTDLWIDNMNSAPSHSPEKKDSDFFTEHTQAPAWDTAATDPSGTQQPALPSESSSLAQPEPGP
NTDLLGTSPQASLELKSSIIGKKKPAAAKKGLGAKKGLGAQKVSNQSFTEIERQAQVAEKLREQ
QAADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKREQAERLGMGLVSRSSISHSVL
SEMQMIEQETPLSAKSSRSQLDLFDDVGTFASGPPKYKDNPFSLGETFGSRWDSDAAWGMDRVE
EKEPEVTISSIRPISERTTSRREVESRISGLESSEARQKFAGAKAISSDMFFGREVDSEYEARS
RLQQLSGSSAISSSDLFGDVDGAHGGGTVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNS
LQDRYGSY

hide sequence

RefSeq Acc Id:	XP_006234592 ⟸ XM_006234530
- Peptide Label:	isoform X1
- UniProtKB:	A6HNC2 (UniProtKB/TrEMBL), A0A8I6A5U9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAGPSKSEIQTLFKRLRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIR STELDSNWSWLQLRCMQVGGNANATAFFRQHGCLANDANTKYNSRAAQMYREKIRQLGSTALAR HGTDLWIDNMNSAPSHSPEKKDSDFFTEHTQAPAWDTAATDPSGTQQPALPSESSSLAQPEPGP NTDLLGTSPQASLESMYLSAKGLSSTRELKSSIIGKKKPAAAKKGLGAKKGLGAQKVSNQSFTE IERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKREQAERLG MGLVSRSSISHSVLSEMQMIEQETPLSAKSSRSQLDLFDDVGTFASGPPKYKDNPFSLGETFGS RWDSDAAWGMDRVEEKEPEVTISSIRPISERTTSRREVESRISGLESSEARQKFAGAKAISSDM FFGREVDSEYEARSRLQQLSGSSAISSSDLFGDVDGAHGGGTVSLGNVLPTADIAQFKQGVKSV AGKMAVLANGVMNSLQDRYGSY hide sequence

RefSeq Acc Id:	XP_006234593 ⟸ XM_006234531
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A5U9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAGPSKSEIQTLFKRLRAIPTNKACFDCGAKSPSWASITYGVFLCIDCSGVHRSLGVHLSFIR STELDSNWSWLQLRCMQVGGNANATAFFRQHGCLANDANTKYNSRAAQMYREKIRQLGSTALAR HGTDLWIDNMNSAPSHSPEKKDSDFFTEHTQAPAWDTAATDPSGTQQPALPSESSSLAQPEPGP NTDLLGTSPQASLAHAHLLPHTELKSSIIGKKKPAAAKKGLGAKKGLGAQKVSNQSFTEIERQA QVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKREQAERLGMGLVS RSSISHSVLSEMQMIEQETPLSAKSSRSQLDLFDDVGTFASGPPKYKDNPFSLGETFGSRWDSD AAWGMDRVEEKEPEVTISSIRPISERTTSRREVESRISGLESSEARQKFAGAKAISSDMFFGRE VDSEYEARSRLQQLSGSSAISSSDLFGDVDGAHGGGTVSLGNVLPTADIAQFKQGVKSVAGKMA VLANGVMNSLQDRYGSY hide sequence

Ensembl Acc Id:

ENSRNOP00000053988 ⟸ ENSRNOT00000057161

Ensembl Acc Id:

ENSRNOP00000091470 ⟸ ENSRNOT00000099467

Ensembl Acc Id:

ENSRNOP00000088256 ⟸ ENSRNOT00000117465

Protein Domains

Arf-GAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3MID3-F1-model_v2	AlphaFold	Q3MID3	1-520	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692214

Promoter ID:

EPDNEW_R2738

Type:

initiation region

Name:

Arfgap2_1

Description:

ADP-ribosylation factor GTPase activating protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	80,081,628 - 80,081,688	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306177	AgrOrtholog
BioCyc Gene	G2FUF-48739	BioCyc
Ensembl Genes	ENSRNOG00000014429	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000057161	ENTREZGENE
	ENSRNOT00000057161.3	UniProtKB/Swiss-Prot
	ENSRNOT00000117465	ENTREZGENE
Gene3D-CATH	1.10.220.150	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7935829	IMAGE-MGC_LOAD
InterPro	ARFGAP/RecO	UniProtKB/Swiss-Prot
	ArfGAP_dom	UniProtKB/Swiss-Prot
	ArfGAP_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:362162	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124884	IMAGE-MGC_LOAD
NCBI Gene	362162	ENTREZGENE
PANTHER	ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED	UniProtKB/Swiss-Prot
	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 2	UniProtKB/Swiss-Prot
Pfam	ArfGap	UniProtKB/Swiss-Prot
PhenoGen	Arfgap2	PhenoGen
PRINTS	REVINTRACTNG	UniProtKB/Swiss-Prot
PROSITE	ARFGAP	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000014429	RatGTEx
SMART	ArfGap	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF57863	UniProtKB/Swiss-Prot
UniProt	A0A8I6A5U9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AFN9_RAT	UniProtKB/TrEMBL
	A6HNC2	ENTREZGENE, UniProtKB/TrEMBL
	A6HNC3	ENTREZGENE, UniProtKB/TrEMBL
	ARFG2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-11-07	Arfgap2	ARF GTPase activating protein 2	Arfgap2	ADP-ribosylation factor GTPase activating protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-05-29	Arfgap2	ADP-ribosylation factor GTPase activating protein 2	Zfp289	zinc finger protein 289	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Zfp289	zinc finger protein 289	Zfp289_predicted	zinc finger protein 289 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfp289_predicted	zinc finger protein 289 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

Send us a Message

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)