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Gene: Ralyl (RALY RNA binding protein-like) Rattus norvegicus

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Symbol:

Ralyl

Name:

RALY RNA binding protein-like

RGD ID:

1305844

Description:

Predicted to enable RNA binding activity and identical protein binding activity. Predicted to be active in nucleus. Orthologous to human RALYL (RALY RNA binding protein like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical LOC294883; hypothetical protein LOC294883; LOC294883; RGD1305844; RNA-binding Raly-like protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RALYL (RALY RNA binding protein like)	HGNC	Ensembl, NCBI
Mus musculus (house mouse):	Ralyl (RALY RNA binding protein-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ralyl (RALY RNA binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RALYL (RALY RNA binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RALYL (RALY RNA binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ralyl (RALY RNA binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RALYL (RALY RNA binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RALYL (RALY RNA binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ralyl (RALY RNA binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ralyl (RALY RNA binding protein like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NR2F6 (nuclear receptor subfamily 2 group F member 6)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Ralyl (RALY RNA binding protein-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ralyl (RALY RNA binding protein-like)	Alliance	DIOPT (OrthoFinder\|PhylomeDB)
Homo sapiens (human):	RALYL (RALY RNA binding protein like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RALYL (RALY RNA binding protein like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoFinder\|PhylomeDB)
Danio rerio (zebrafish):	ralyl (RALY RNA binding protein like)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ralyl (RALY RNA binding protein like)	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	NAB3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG42458	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ralyl	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ralyl	Alliance	DIOPT (OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	89,390,212 - 90,181,681 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	89,390,129 - 90,181,624 (-)	Ensembl				GRCr8
mRatBN7.2	2	87,482,747 - 88,274,329 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	87,482,755 - 88,274,452 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	93,999,573 - 94,249,056 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	92,120,575 - 92,370,064 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	87,177,384 - 87,426,873 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	89,039,990 - 89,842,784 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	89,041,591 - 89,310,946 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	108,812,284 - 109,612,384 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	89,038,365 - 89,323,703 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	83,253,263 - 83,502,901 (-)	NCBI		Celera
RGSC_v3.1	2	88,983,334 - 89,268,665 (-)	NCBI
Cytogenetic Map	2	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

3',5'-cyclic UMP (ISO)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

clozapine (ISO)

Cuprizon (EXP)

ethanol (ISO)

methylmercury chloride (ISO)

Moniliformin (ISO)

paracetamol (ISO)

PCB138 (ISO)

pioglitazone (ISO)

rotenone (ISO)

silicon dioxide (ISO)

Soman (EXP)

titanium dioxide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA)

Molecular Function

identical protein binding (IEA,ISO)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:16189514	PMID:19447967	PMID:22658674	PMID:25416956

Genomics

Comparative Map Data

Ralyl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	89,390,212 - 90,181,681 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	89,390,129 - 90,181,624 (-)	Ensembl				GRCr8
mRatBN7.2	2	87,482,747 - 88,274,329 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	87,482,755 - 88,274,452 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	93,999,573 - 94,249,056 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	92,120,575 - 92,370,064 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	87,177,384 - 87,426,873 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	89,039,990 - 89,842,784 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	89,041,591 - 89,310,946 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	108,812,284 - 109,612,384 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	89,038,365 - 89,323,703 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	83,253,263 - 83,502,901 (-)	NCBI		Celera
RGSC_v3.1	2	88,983,334 - 89,268,665 (-)	NCBI
Cytogenetic Map	2	q23	NCBI

RALYL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	84,182,787 - 84,921,844 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	84,182,787 - 84,921,844 (+)	Ensembl			hg38	GRCh38
GRCh37	8	85,095,022 - 85,834,079 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	85,258,008 - 85,996,634 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	81,099,135 - 81,838,471 (+)	NCBI		Celera
Cytogenetic Map	8	q21.2	NCBI
HuRef	8	80,586,998 - 81,326,356 (+)	NCBI		HuRef
CHM1_1	8	85,146,832 - 85,885,899 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	84,620,396 - 85,359,723 (+)	NCBI		T2T-CHM13v2.0

Ralyl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	13,535,942 - 14,247,347 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	13,536,715 - 14,247,347 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	13,471,655 - 14,182,287 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	13,471,655 - 14,182,287 (+)	Ensembl			mm10	GRCm38
MGSCv37	3	13,471,655 - 14,182,287 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	13,454,214 - 14,158,716 (+)	NCBI		MGSCv36	mm8
Celera	3	13,494,627 - 14,199,985 (+)	NCBI		Celera
Cytogenetic Map	3	A1	NCBI
cM Map	3	3.01	NCBI

Ralyl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	2,409,841 - 2,747,944 (+)	Ensembl
ChiLan1.0	NW_004955417	2,123,050 - 2,747,906 (+)	NCBI	ChiLan1.0	ChiLan1.0

RALYL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	99,928,419 - 100,659,109 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	75,557,563 - 76,291,638 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	80,714,397 - 81,448,302 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	82,329,769 - 83,059,678 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	82,669,573 - 83,058,749 (+)	Ensembl			panPan2	panpan1.1

RALYL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	30,789,509 - 31,497,056 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	30,791,710 - 31,496,100 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	31,073,427 - 31,779,954 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	30,930,407 - 31,646,022 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	30,932,620 - 31,646,022 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	31,000,337 - 31,706,756 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	31,012,329 - 31,722,293 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	31,389,080 - 32,103,495 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ralyl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	47,759,258 - 48,426,756 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936656	18,671 - 329,984 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936656	19,459 - 179,394 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RALYL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	51,785,380 - 52,558,442 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	51,785,372 - 52,559,659 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	56,868,098 - 57,058,792 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RALYL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	79,572,301 - 80,294,523 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	80,091,064 - 80,295,634 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	60,799,850 - 61,555,249 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ralyl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	6,707,207 - 7,104,617 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624744	6,709,014 - 7,459,398 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ralyl
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	147,299,387 - 147,979,976 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ralyl
6366 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	249
Count of miRNA genes:	164
Interacting mature miRNAs:	192
Transcripts:	ENSRNOT00000015195
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578777	Stresp15	Stress response QTL 15	2	0.05	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	2	61556902	106556902	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1598865	Bp296	Blood pressure QTL 296	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	82947902	127947902	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1578772	Stresp14	Stress response QTL 14	5	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	2	84056790	132859658	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
61465	Bp13	Blood pressure QTL 13	3.3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	78269809	104744824	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	41801363	104744824	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
2317058	Aia13	Adjuvant induced arthritis QTL 13	2.9		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	2	78269809	123269809	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	44537979	112567334	Rat
5684990	Bmd82	Bone mineral density QTL 82	2.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	2	61051541	105724065	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1359034	Bp274	Blood pressure QTL 274			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	51266859	96266859	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
631500	Bp99	Blood pressure QTL 99	2.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	61051883	104684275	Rat
61392	Bp6	Blood pressure QTL 6	7		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	82214549	127214549	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
5684996	Bmd85	Bone mineral density QTL 85	4.7	0.024	tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	2	61051541	105724065	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
1558648	Smcn1	Smooth muscle cell number QTL 1		0.039	blood vessel smooth muscle cell quantity (VT:0010525)	aorta smooth muscle cell count per unit vessel length (CMO:0001646)	2	60861391	105861391	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	38426449	111295694	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	44904355	89904355	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	61051541	143746880	Rat

Markers in Region

D2Rat23

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	87,668,432 - 87,668,614 (+)	MAPPER	mRatBN7.2
mRatBN7.2	2	87,668,432 - 87,668,614 (-)	MAPPER	mRatBN7.2
Rnor_6.0	2	77,202,595 - 77,202,776	NCBI	Rnor6.0
Rnor_6.0	2	89,228,057 - 89,228,238	NCBI	Rnor6.0
Rnor_5.0	2	96,929,393 - 96,929,574	UniSTS	Rnor5.0
Rnor_5.0	2	108,997,726 - 108,997,907	UniSTS	Rnor5.0
RGSC_v3.4	2	89,238,005 - 89,238,245	RGD	RGSC3.4
RGSC_v3.4	2	89,238,037 - 89,238,218	UniSTS	RGSC3.4
Celera	2	83,420,858 - 83,421,039	UniSTS
RGSC_v3.1	2	89,182,999 - 89,183,180	RGD
RH 3.4 Map	2	540.4	UniSTS
RH 3.4 Map	2	540.4	RGD
RH 2.0 Map	2	442.5	RGD
SHRSP x BN Map	2	35.4298	RGD
Cytogenetic Map	2	q23	UniSTS

RH131862

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	87,482,824 - 87,483,028 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	89,041,669 - 89,041,872	NCBI	Rnor6.0
Rnor_5.0	2	108,813,963 - 108,814,166	UniSTS	Rnor5.0
RGSC_v3.4	2	89,038,443 - 89,038,646	UniSTS	RGSC3.4
Celera	2	83,253,341 - 83,253,544	UniSTS
RH 3.4 Map	2	538.5	UniSTS
Cytogenetic Map	2	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	3	21	150	41	39	18	11	18	2	159	51	5	131	78	71	21	28	28

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC092614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015195 ⟹ ENSRNOP00000015195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	89,390,212 - 89,658,472 (-)	Ensembl
mRatBN7.2 Ensembl	2	87,482,755 - 87,751,004 (-)	Ensembl
Rnor_6.0 Ensembl	2	89,041,591 - 89,310,946 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000068507 ⟹ ENSRNOP00000063407

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	89,390,129 - 90,180,279 (-)	Ensembl
mRatBN7.2 Ensembl	2	87,483,116 - 88,272,946 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096427 ⟹ ENSRNOP00000077377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	89,390,212 - 89,658,472 (-)	Ensembl
mRatBN7.2 Ensembl	2	87,549,280 - 87,751,004 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100768 ⟹ ENSRNOP00000094728

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	89,390,129 - 90,181,624 (-)	Ensembl
mRatBN7.2 Ensembl	2	87,483,116 - 88,274,452 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158783 ⟹ ENSRNOP00000107066

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	89,390,129 - 89,658,472 (-)	Ensembl

RefSeq Acc Id:

NM_001024978 ⟹ NP_001020149

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 89,658,472 (-)	NCBI
mRatBN7.2	2	87,482,747 - 87,751,013 (-)	NCBI
Rnor_6.0	2	89,041,591 - 89,310,946 (-)	NCBI
Rnor_5.0	2	108,812,284 - 109,612,384 (-)	NCBI
RGSC_v3.4	2	89,038,365 - 89,323,703 (-)	RGD
Celera	2	83,253,263 - 83,502,901 (-)	RGD

Sequence:

show sequence

CAGCCTCACTGCAAAGCAGGAGCAGAACCCGTCTCTTTGTCTCCGTGGTCAAACCAATTACTTC
TTAGAAAGTCGGCATTTCCTTTTGCAGAATGACCATGTACAGGAGCAAACGCAGACATCAGAGA
TATATCAACATGGCAGGGGAACCCAAACCATACAGACCAAAGCCTGGAAGTAAGAGGCCCTTGT
CTGCGCTTTACAGGCTTGAATCAAAGGAGCCATTCCTGTCTGTTGGGCTGTTTGATTACCATGG
CCGTGTACCTCCGCCTCCTCGAGCTGTCATCCCACTTAAACGTCCCAGAGTGGCTGTCACCACC
ACACGCAGGGGAAAAGGTGTCTTTTCCATGAAAGGGGGATCCAGATCTTCTGTTGGTGGGTCAT
CTTCATCAGGCTCTAAGTTGAAATCAGATGAGTTACAGACAATCAAGAAAGAATTAACCCAGAT
CAAAACTAAAATTGACTCCTTGCTAGGGCGCCTGGAGAAGATTGAGAAGCAGCAAAAGGCAGAA
GCAGTTTCTACAGATAAAGTGATATGAAGTAGTGTACACTAGTGCAAAAGAAGAAAAGAGAAAT
TGTGACATGCGGAAAAAGGAGAAAGATGGTTTCATAATGGACAGCAACATCTGAAATTCAGTTT
ATATAAAATCCTCAGTCATGGACAGTGCTGTTCACTTCCAGAAATACCATTTCTTCTGTGTCCC
AAGCTGTACAATTGTTGTTTTATGGTTTACATTGTAAATGTGTTTTCCCTCTTGCTTATTATGT
TTTTTAAGTCTTAAATTGTGAAGGATGTTAATGAATGGTGAGAGAGACACTGTATACAAATGTA
TATTTGTAGAAGCTATTTTTATGATTAGCATGTGTCATTGTTGATCACATTGTCATGTGGTGTT
GCAATCCTACATTTAAAGCTTGTTTCCAACAATGTCATAGGGAAAATATACATTGTATGCTAGT
TTTTATAATTTAATTTCAATTTATAGTTTAAAGTACCTTAGACCATGAGAAAATCTATTTGAAA
AGCTATATTTCTGCCCTCTATAAGCACCATGTTTATTAATAAAGAATGCAGTTATTTCAGAAGT
GATGCAAGAGTTTAAGGACTTTGGTTTGACCTGTGAGCATGCTTGTCTCTAGTGAGCTGAAATG
ATCCAATCATCACCTATTTCCTGAGTCTGAGCTTCTGTGGACAGTTTTCAGTACTCACAGATGA
GAAGTAGATTGATAAGAAAAAGATTTTCTTGTCCTTGGATTCAAACGTTTCAGTTAGTGCACAC
CCCCTCCATCTGACCTCCTAGTCCTCAGAATCCTCCATTTCCAAGCATTGTGTTTTCCAAATCC
TCTTGGCTATTGTCTCTCGTGCAGTGGAAATGGAAGAGACCATCCCCACAGACTATAGGCACAT
TCAGCACATAATTTCTTAATAAATACTGGTTCTTTTAAAACAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001393770 ⟹ NP_001380699

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 89,658,472 (-)	NCBI
mRatBN7.2	2	87,482,747 - 87,751,013 (-)	NCBI

RefSeq Acc Id:

XM_008760853 ⟹ XP_008759075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 89,658,719 (-)	NCBI
mRatBN7.2	2	87,482,747 - 87,751,837 (-)	NCBI
Rnor_6.0	2	89,039,990 - 89,311,721 (-)	NCBI

Sequence:

show sequence

GATGATATTTTCCAGTTCCAACCATCAAGATTGTTCTTATCTGGCCAGAGGACACTGCATGTGA
AGCTACAGCTGCATACTTTCCATCTGGGGGAAACAGTAAAACATGCTTAGGTAAAATTTTACCT
CAGTATTGTCAGAGTAGAGGACTGAGCACTGAAATGAGGCTGGAGGTAGATGGAAGGTTCTAGC
AAAACTTTCTGCAAGGAGCAGCACAGTTCCTAGCATGCATTAAGTACTTTCTGAGCCTGAGTTC
CAACACTGTACTCCTTTGATGGATGTTAAGTATAGAGTTCTGCTTTGTGGTCAAAGCACACACT
GTTTGAAGAAATAGACAACACGGCAAGTGATGACTACTTTATCAATTAAATACACAAGATGCAA
GAAGAGGCAAGTAAGGAAAGAATAAAATACAGATCTCAGCATTTTCATGTATCCAGAGAATATG
AGAAATCATAGGACACTTTTTAATATTTGAAAATACCATACAAGGGTCTTCATGTTTCACCCTG
TAATTTTCAGCATTACTGTTCCTGTTAACTGTATGGATCTGTTCTTAATTCAACATTGCTTCGA
GCATAACACTTTAGTAATCTAGATCTTATTAAAGAACTTAACTAACATTGGTTGGGGTGTTAGA
AAATTCTAATTTTCTCTGGGAGATTTGCATTGGACAGAGTAGTTACAGGCAATGGCACATCCCT
GTAATTTTACGAGAATGGTATTGCCCTGGCTTTCACTGTGTGATTGCTGGTTACCTTCTGTCAG
CGAGCAACAGCCTCACTGCAAAGCAGGAGCAGAACCCGTCTCTTTGTCTCCGTGGTCAAACCAA
TTACTTCTTAGAAAGTCGGCATTTCCTTTTGCAGAATGACCATGTACAGGAGCAAACGCAGACA
TCAGAGATATATCAACATGGCAGGGGAACCCAAACCATACAGACCAAAGCCTGGAAGTAAGAGG
CCCTTGTCTGCGCTTTACAGGCTTGAATCAAAGGAGCCATTCCTGTCTGTTGGTGGTTATGTAT
TTGACTACGATTACTACAGAGATGATTTCTACAATCGGCTGTTTGATTACCATGGCCGTGTACC
TCCGCCTCCTCGAGCTGTCATCCCACTTAAACGTCCCAGAGTGGCTGTCACCACCACACGCAGG
GGAAAAGGTGTCTTTTCCATGAAAGGGGGATCCAGATCTTCTGTTGGTGGGTCATCTTCATCAG
GCTCTAAGTTGAAATCAGATGAGTTACAGACAATCAAGAAAGAATTAACCCAGATCAAAACTAA
AATTGACTCCTTGCTAGGGCGCCTGGAGAAGATTGAGAAGCAGCAAAAGGCAGAAGCAGAAGCT
CAGAAGAAGCAATTGGAGGAGAGTATAGAGCTGATCCAAGACGAATGTGTGTCAGAGAATGCAG
ACCACTCCACAGAGGAGCCTGCTGAAGGAGGGCAAGAAGCGGATGGAGGAGAGATGACTGATGG
GGTAGAGGAGGACTTCGATGAAGATGGGGGTCACGAGCTGTTTCTACAGATAAAGTGATATGAA
GTAGTGTACACTAGTGCAAAAGAAGAAAAGAGAAATTGTGACATGCGGAAAAAGGAGAAAGATG
GTTTCATAATGGACAGCAACATCTGAAATTCAGTTTATATAAAATCCTCAGTCATGGACAGTGC
TGTTCACTTCCAGAAATACCATTTCTTCTGTGTCCCAAGCTGTACAATTGTTGTTTTATGGTTT
ACATTGTAAATGTGTTTTCCCTCTTGCTTATTATGTTTTTTAAGTCTTAAATTGTGAAGGATGT
TAATGAATGGTGAGAGAGACACTGTATACAAATGTATATTTGTAAAAGCTATTTTTATGATTAG
CATGTGTCATTGTTGATCACATTGTCATGTGGTGTTGCAATCCTACATTTAAAGCTTGTTTCCA
ACAATGTCATAGGGAAAATATACATTGTATGCTAGTTTTTATAATTTAATTTCAATTTATAGTT
TAAAGTACCTTAGACCATGAGAAAATCTATTTGAAAAGCTATATTTCTGCCCTCTATAAGCACC
ATGTTTATTAATAAAGAATGCAGTTATTTCAGAAGTGATGCAAGAGTTTAAGGACTTTGGTTTG
ACCTGTGAGCATGCTTGTCTCTAGTGAGCTGAAATGATCCAATCATCACCTATTTCCTGAGTCT
GAGCTTCTGTGGACAGTTTTCAGTACTCACAGATGAGAAGTAGATTGATAAGAAAAAGATTTTC
TTGTCCTTGGATTCAAACGTTTCAGTTAGTGCACACCCCCTCCATCTGACCTCCTAGTCCTCAG
AATCCTCCATTTCCAAGCATTGTGTTTTCCAAATCCTCTTGGCTATTGTCTCTCGTGCAGTGGA
AATGGAAGAGACCATCCCCACAGACTATAGGCACATTCAGCACATAATTTCTTAATAAATACTG
GTTCTTTTAAAACAAAGTTGGTCTTTGGTTTTTCTTTGGTTTGTGCTTGTTTTAACATTCAATG
TGAACATTTTGCATCTCTACAATGGGATAAAAACAAGTCCAATAATAAAATCAGAGTGACTACA
CTGAAATATGTTCTGGATGTGTACTCCTCATGGCATGCCTGTGTTTTAACACACATTAACTTGC
TACACAAAAGAAAACCAAATGGCCCTGCATTCTTGACAAAAGTCACCATCTAATTTTCATTTTG
AGAATGTGTATGCTTCTGCGTATTGAATGATAATAAAACATTTCTAGATATAAATTTATCTACC
TCATCATGAGGTCTCGATTTTCGATCAGATCATAAGTTTGTTGCTAGATATTTTCAAAGTTTCA
CTAAAGAGCTTATGACAATTTCCATCCACATTAGTTTTGCTACTTACACTGCTTCATTATATCA
AACCATATGTTTTTACACGGGAACTGGAGAGCACCAGAATCACCCCAGTGTGGTTTTTGCTAAG
TTTCTTCCTAATGACTTCAAAACAGTTTATTTCATACTGATTCTTTGTATTTTAAACATAATCA
AATTCAAAAATAACTTATATCAAACGCCAACATTTTCAACTAAGATTTTGGGAGAAAAATTATG
AGTCAAATTTACTAGAGAATACAAATGTGCTATTTTACTTTTTCTTGCATGTTATGTATGTTTA
TGTGCACACATATGTATATTGTTATTGTTTGTTTCCTTACTCTGTAGACTGTTGATATTCAAAT
ACAATGTTTCATGCATAATAGGCAAGAATTCTACCTCTGCCACATCTCCTTTATACTTTCTTGT
TTGAGAGGAGTGGATTGAATTTTTAGAAATTCGAGCAATAACAGCTAAGATCCAGATTGAAAGG
CTCTCTAGCAGACCCAAGCACTGCAGACAGATTTTGCCCTCTCCCCATCCCTCTCCCTTTGTAA
ACCTTTTGGTTATATTTTCAAGTTAGCTCTCAATGTCTCTTCCTTTATTTGACCACTGACTTAT
TCCTGAGACAAATAGCCAAGGATCAAGTATCAATCCTTTAAGATCCTTAAGATCAAAATTCATC
ATTTGGCTACAATGGCTAACCTGCTATCTTTTCAGGAATAACCAATTCATACTAGCACAAACTT
CCTCCTTTTCTCCTTAAAATCCCATTCCTGCAAAAAAGCACTTGCTGCTTGCTCTCTTCATTTG
CTCCATCCAGAAGCAACCTCCACCCACTTATTTGTCCCTCAATGGTAATAAATCTCCATTGTGC
TGAGAACTTGTTGCCTGAGTATGTATATACCAACTCTGAGGAGACCCCTTGCACAGATTATCAT
TGCTCATCCCTTGTTTGGAAACATGAAAAGCATAAGATGGCTATAGTAAGTTACAAGACAAGGT
GAGACTAATCAAAGCTTGATTCAATGTGTTATATTGTTTTATGTATACTGATTTACTTCCAAAT
ATGCATATTTTGTATGAATAATGGGATGCTTCCTTGCCTACACTGTGTACCAGGAAATAGCATC
TATGAGTATTTTCCAAATATGTCATCTATCTGCCTTTATAGTAGTCAATAAAGACAAATGATAC
CACCATGGTGAGGTCAA

hide sequence

RefSeq Acc Id:

XM_017590722 ⟹ XP_017446211

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 90,180,607 (-)	NCBI
mRatBN7.2	2	87,482,747 - 88,273,184 (-)	NCBI
Rnor_6.0	2	89,039,990 - 89,841,605 (-)	NCBI

Sequence:

show sequence

CGTGTGCGCGCCGGTTCCTGGCTGTGTCCGAGCCCGCAATGGGGAAAGCTGCGCCGGGAGCCAG
AACCAAAGTGCTCTCGGGGCCGCGTTGGTTATGAAGATGCACACACCCCCCTCCCCCGGTGGCG
CCTAGGCTAGGGTGACTGCTGGGGAACCGAAGCTCGGCGGGCGGTCGGGCAAGTTAGCCTGAAC
CACCCGCAGCACAGGAATCCGAGGGCCCCGCAGGGCGCTGGCCTTGGGGTGATCCCGCCCTTTG
GGCGCGGGAGATGGAGAGGTGAAGGGGCGGGGACCGCGGCCGCCCCGGGGCTGGCGGCTGGTCA
GGCGGCCAGAGCTCGAGGTGTCTAGGATGGCAGCGGTCCCTGAGCGCCTCTCTCTTGCCTCTGC
GCCCCGCGGGAGCAGTGCAGTGGGTTCTTCCCAACCGCCTCCGCTAGCTCTGGCGGTTTCACAT
CTTCCTTGTGGTTTCCCTCATGTTTTCCCGGCGGCGTCGCGTTGGTTTTAAGCCCTTGCTGGTG
TCTTCTGAGAGGGAATGGTCACTTGTACCGGTGCATACTTGCGTTTAATGAGACGACGCCTACA
AGGATTAAAACAAGGTGAACCAACCATGACCGGCAAAACACAAACAAGCAATGTTACCAATAAG
AATGACCCCAAGTCCATCAACTCCCGGGTTTTCATCGGCAATTTGAATACAGCCATTGTCAAGA
AAGTCGACATTGAAGCTATTTTTTCAAAGTATGGAAAAATCGTTGGCTGCTCTGTTCACAAAGG
GTATGCTTTCGTTCAGTACATGAGTGAACGGCATGCAAGAGCTGCGGTGGCTGGAGAAAATGCC
AGGGTCATCGCAGGCCAGCCTCTTGATATCAACATGGCAGGGGAACCCAAACCATACAGACCAA
AGCCTGGAAGTAAGAGGCCCTTGTCTGCGCTTTACAGGCTTGAATCAAAGGAGCCATTCCTGTC
TGTTGGTGGTTATGTATTTGACTACGATTACTACAGAGATGATTTCTACAATCGGCTGTTTGAT
TACCATGGCCGTGTACCTCCGCCTCCTCGAGCTGTCATCCCACTTAAACGTCCCAGAGTGGCTG
TCACCACCACACGCAGGGGAAAAGGTGTCTTTTCCATGAAAGGGGGATCCAGATCTTCTGTTGG
TGGGTCATCTTCATCAGGCTCTAAGTTGAAATCAGATGAGTTACAGACAATCAAGAAAGAATTA
ACCCAGATCAAAACTAAAATTGACTCCTTGCTAGGGCGCCTGGAGAAGATTGAGAAGCAGCAAA
AGGCAGAAGCAGAAGCTCAGAAGAAGCAATTGGAGGAGAGTATAGAGCTGATCCAAGACGAATG
TGTGTCAGAGAATGCAGACCACTCCACAGAGGAGCCTGCTGAAGGAGGGCAAGAAGCGGATGGA
GGAGAGATGACTGATGGGGTAGAGGAGGACTTCGATGAAGATGGGGGTCACGAGCTGTTTCTAC
AGATAAAGTGATATGAAGTAGTGTACACTAGTGCAAAAGAAGAAAAGAGAAATTGTGACATGCG
GAAAAAGGAGAAAGATGGTTTCATAATGGACAGCAACATCTGAAATTCAGTTTATATAAAATCC
TCAGTCATGGACAGTGCTGTTCACTTCCAGAAATACCATTTCTTCTGTGTCCCAAGCTGTACAA
TTGTTGTTTTATGGTTTACATTGTAAATGTGTTTTCCCTCTTGCTTATTATGTTTTTTAAGTCT
TAAATTGTGAAGGATGTTAATGAATGGTGAGAGAGACACTGTATACAAATGTATATTTGTAAAA
GCTATTTTTATGATTAGCATGTGTCATTGTTGATCACATTGTCATGTGGTGTTGCAATCCTACA
TTTAAAGCTTGTTTCCAACAATGTCATAGGGAAAATATACATTGTATGCTAGTTTTTATAATTT
AATTTCAATTTATAGTTTAAAGTACCTTAGACCATGAGAAAATCTATTTGAAAAGCTATATTTC
TGCCCTCTATAAGCACCATGTTTATTAATAAAGAATGCAGTTATTTCAGAAGTGATGCAAGAGT
TTAAGGACTTTGGTTTGACCTGTGAGCATGCTTGTCTCTAGTGAGCTGAAATGATCCAATCATC
ACCTATTTCCTGAGTCTGAGCTTCTGTGGACAGTTTTCAGTACTCACAGATGAGAAGTAGATTG
ATAAGAAAAAGATTTTCTTGTCCTTGGATTCAAACGTTTCAGTTAGTGCACACCCCCTCCATCT
GACCTCCTAGTCCTCAGAATCCTCCATTTCCAAGCATTGTGTTTTCCAAATCCTCTTGGCTATT
GTCTCTCGTGCAGTGGAAATGGAAGAGACCATCCCCACAGACTATAGGCACATTCAGCACATAA
TTTCTTAATAAATACTGGTTCTTTTAAAACAAAGTTGGTCTTTGGTTTTTCTTTGGTTTGTGCT
TGTTTTAACATTCAATGTGAACATTTTGCATCTCTACAATGGGATAAAAACAAGTCCAATAATA
AAATCAGAGTGACTACACTGAAATATGTTCTGGATGTGTACTCCTCATGGCATGCCTGTGTTTT
AACACACATTAACTTGCTACACAAAAGAAAACCAAATGGCCCTGCATTCTTGACAAAAGTCACC
ATCTAATTTTCATTTTGAGAATGTGTATGCTTCTGCGTATTGAATGATAATAAAACATTTCTAG
ATATAAATTTATCTACCTCATCATGAGGTCTCGATTTTCGATCAGATCATAAGTTTGTTGCTAG
ATATTTTCAAAGTTTCACTAAAGAGCTTATGACAATTTCCATCCACATTAGTTTTGCTACTTAC
ACTGCTTCATTATATCAAACCATATGTTTTTACACGGGAACTGGAGAGCACCAGAATCACCCCA
GTGTGGTTTTTGCTAAGTTTCTTCCTAATGACTTCAAAACAGTTTATTTCATACTGATTCTTTG
TATTTTAAACATAATCAAATTCAAAAATAACTTATATCAAACGCCAACATTTTCAACTAAGATT
TTGGGAGAAAAATTATGAGTCAAATTTACTAGAGAATACAAATGTGCTATTTTACTTTTTCTTG
CATGTTATGTATGTTTATGTGCACACATATGTATATTGTTATTGTTTGTTTCCTTACTCTGTAG
ACTGTTGATATTCAAATACAATGTTTCATGCATAATAGGCAAGAATTCTACCTCTGCCACATCT
CCTTTATACTTTCTTGTTTGAGAGGAGTGGATTGAATTTTTAGAAATTCGAGCAATAACAGCTA
AGATCCAGATTGAAAGGCTCTCTAGCAGACCCAAGCACTGCAGACAGATTTTGCCCTCTCCCCA
TCCCTCTCCCTTTGTAAACCTTTTGGTTATATTTTCAAGTTAGCTCTCAATGTCTCTTCCTTTA
TTTGACCACTGACTTATTCCTGAGACAAATAGCCAAGGATCAAGTATCAATCCTTTAAGATCCT
TAAGATCAAAATTCATCATTTGGCTACAATGGCTAACCTGCTATCTTTTCAGGAATAACCAATT
CATACTAGCACAAACTTCCTCCTTTTCTCCTTAAAATCCCATTCCTGCAAAAAAGCACTTGCTG
CTTGCTCTCTTCATTTGCTCCATCCAGAAGCAACCTCCACCCACTTATTTGTCCCTCAATGGTA
ATAAATCTCCATTGTGCTGAGAACTTGTTGCCTGAGTATGTATATACCAACTCTGAGGAGACCC
CTTGCACAGATTATCATTGCTCATCCCTTGTTTGGAAACATGAAAAGCATAAGATGGCTATAGT
AAGTTACAAGACAAGGTGAGACTAATCAAAGCTTGATTCAATGTGTTATATTGTTTTATGTATA
CTGATTTACTTCCAAATATGCATATTTTGTATGAATAATGGGATGCTTCCTTGCCTACACTGTG
TACCAGGAAATAGCATCTATGAGTATTTTCCAAATATGTCATCTATCTGCCTTTATAGTAGTCA
ATAAAGACAAATGATACCACCATGGTGAGGTCAA

hide sequence

RefSeq Acc Id:

XM_017590724 ⟹ XP_017446213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 90,181,681 (-)	NCBI
mRatBN7.2	2	87,482,747 - 88,274,227 (-)	NCBI
Rnor_6.0	2	89,039,990 - 89,842,631 (-)	NCBI

Sequence:

show sequence

TGAGAAAAAAACGCGCTTCATTCCTTCTTCCACCGCCATACTGTATTTTCCTAAATCTCATTTT
TATTCCAACATTTTACTCCCGCTCGTGGAAGGTTTTTCTGGAAAAAAAAAAATGAAGTGCGGTT
TGGTTTCCTTGTCAACGGAGGATGAAGTGAACAGCACAACAGCTCGCAGAGAGCAGGATTAAAA
CAAGGTGAACCAACCATGACCGGCAAAACACAAACAAGCAATGTTACCAATAAGAATGACCCCA
AGTCCATCAACTCCCGGGTTTTCATCGGCAATTTGAATACAGCCATTGTCAAGAAAGTCGACAT
TGAAGCTATTTTTTCAAAGTATGGAAAAATCGTTGGCTGCTCTGTTCACAAAGGGTATGCTTTC
GTTCAGTACATGAGTGAACGGCATGCAAGAGCTGCGGTGGCTGGAGAAAATGCCAGGGTCATCG
CAGGCCAGCCTCTTGATATCAACATGGCAGGGGAACCCAAACCATACAGACCAAAGCCTGGAAG
TAAGAGGCCCTTGTCTGCGCTTTACAGGCTTGAATCAAAGGAGCCATTCCTGTCTGTTGGTGGT
TATGTATTTGACTACGATTACTACAGAGATGATTTCTACAATCGGCTGTTTGATTACCATGGCC
GTGTACCTCCGCCTCCTCGAGCTGTCATCCCACTTAAACGTCCCAGAGTGGCTGTCACCACCAC
ACGCAGGGGAAAAGGTGTCTTTTCCATGAAAGGGGGATCCAGATCTTCTGTTGGTGGGTCATCT
TCATCAGGCTCTAAGTTGAAATCAGATGAGTTACAGACAATCAAGAAAGAATTAACCCAGATCA
AAACTAAAATTGACTCCTTGCTAGGGCGCCTGGAGAAGATTGAGAAGCAGCAAAAGGCAGAAGC
AGAAGCTCAGAAGAAGCAATTGGAGGAGAGTATAGAGCTGATCCAAGACGAATGTGTGTCAGAG
AATGCAGACCACTCCACAGAGGAGCCTGCTGAAGGAGGGCAAGAAGCGGATGGAGGAGAGATGA
CTGATGGGGTAGAGGAGGACTTCGATGAAGATGGGGGTCACGAGCTGTTTCTACAGATAAAGTG
ATATGAAGTAGTGTACACTAGTGCAAAAGAAGAAAAGAGAAATTGTGACATGCGGAAAAAGGAG
AAAGATGGTTTCATAATGGACAGCAACATCTGAAATTCAGTTTATATAAAATCCTCAGTCATGG
ACAGTGCTGTTCACTTCCAGAAATACCATTTCTTCTGTGTCCCAAGCTGTACAATTGTTGTTTT
ATGGTTTACATTGTAAATGTGTTTTCCCTCTTGCTTATTATGTTTTTTAAGTCTTAAATTGTGA
AGGATGTTAATGAATGGTGAGAGAGACACTGTATACAAATGTATATTTGTAAAAGCTATTTTTA
TGATTAGCATGTGTCATTGTTGATCACATTGTCATGTGGTGTTGCAATCCTACATTTAAAGCTT
GTTTCCAACAATGTCATAGGGAAAATATACATTGTATGCTAGTTTTTATAATTTAATTTCAATT
TATAGTTTAAAGTACCTTAGACCATGAGAAAATCTATTTGAAAAGCTATATTTCTGCCCTCTAT
AAGCACCATGTTTATTAATAAAGAATGCAGTTATTTCAGAAGTGATGCAAGAGTTTAAGGACTT
TGGTTTGACCTGTGAGCATGCTTGTCTCTAGTGAGCTGAAATGATCCAATCATCACCTATTTCC
TGAGTCTGAGCTTCTGTGGACAGTTTTCAGTACTCACAGATGAGAAGTAGATTGATAAGAAAAA
GATTTTCTTGTCCTTGGATTCAAACGTTTCAGTTAGTGCACACCCCCTCCATCTGACCTCCTAG
TCCTCAGAATCCTCCATTTCCAAGCATTGTGTTTTCCAAATCCTCTTGGCTATTGTCTCTCGTG
CAGTGGAAATGGAAGAGACCATCCCCACAGACTATAGGCACATTCAGCACATAATTTCTTAATA
AATACTGGTTCTTTTAAAACAAAGTTGGTCTTTGGTTTTTCTTTGGTTTGTGCTTGTTTTAACA
TTCAATGTGAACATTTTGCATCTCTACAATGGGATAAAAACAAGTCCAATAATAAAATCAGAGT
GACTACACTGAAATATGTTCTGGATGTGTACTCCTCATGGCATGCCTGTGTTTTAACACACATT
AACTTGCTACACAAAAGAAAACCAAATGGCCCTGCATTCTTGACAAAAGTCACCATCTAATTTT
CATTTTGAGAATGTGTATGCTTCTGCGTATTGAATGATAATAAAACATTTCTAGATATAAATTT
ATCTACCTCATCATGAGGTCTCGATTTTCGATCAGATCATAAGTTTGTTGCTAGATATTTTCAA
AGTTTCACTAAAGAGCTTATGACAATTTCCATCCACATTAGTTTTGCTACTTACACTGCTTCAT
TATATCAAACCATATGTTTTTACACGGGAACTGGAGAGCACCAGAATCACCCCAGTGTGGTTTT
TGCTAAGTTTCTTCCTAATGACTTCAAAACAGTTTATTTCATACTGATTCTTTGTATTTTAAAC
ATAATCAAATTCAAAAATAACTTATATCAAACGCCAACATTTTCAACTAAGATTTTGGGAGAAA
AATTATGAGTCAAATTTACTAGAGAATACAAATGTGCTATTTTACTTTTTCTTGCATGTTATGT
ATGTTTATGTGCACACATATGTATATTGTTATTGTTTGTTTCCTTACTCTGTAGACTGTTGATA
TTCAAATACAATGTTTCATGCATAATAGGCAAGAATTCTACCTCTGCCACATCTCCTTTATACT
TTCTTGTTTGAGAGGAGTGGATTGAATTTTTAGAAATTCGAGCAATAACAGCTAAGATCCAGAT
TGAAAGGCTCTCTAGCAGACCCAAGCACTGCAGACAGATTTTGCCCTCTCCCCATCCCTCTCCC
TTTGTAAACCTTTTGGTTATATTTTCAAGTTAGCTCTCAATGTCTCTTCCTTTATTTGACCACT
GACTTATTCCTGAGACAAATAGCCAAGGATCAAGTATCAATCCTTTAAGATCCTTAAGATCAAA
ATTCATCATTTGGCTACAATGGCTAACCTGCTATCTTTTCAGGAATAACCAATTCATACTAGCA
CAAACTTCCTCCTTTTCTCCTTAAAATCCCATTCCTGCAAAAAAGCACTTGCTGCTTGCTCTCT
TCATTTGCTCCATCCAGAAGCAACCTCCACCCACTTATTTGTCCCTCAATGGTAATAAATCTCC
ATTGTGCTGAGAACTTGTTGCCTGAGTATGTATATACCAACTCTGAGGAGACCCCTTGCACAGA
TTATCATTGCTCATCCCTTGTTTGGAAACATGAAAAGCATAAGATGGCTATAGTAAGTTACAAG
ACAAGGTGAGACTAATCAAAGCTTGATTCAATGTGTTATATTGTTTTATGTATACTGATTTACT
TCCAAATATGCATATTTTGTATGAATAATGGGATGCTTCCTTGCCTACACTGTGTACCAGGAAA
TAGCATCTATGAGTATTTTCCAAATATGTCATCTATCTGCCTTTATAGTAGTCAATAAAGACAA
ATGATACCACCATGGTGAGGTCAA

hide sequence

RefSeq Acc Id:

XM_017590726 ⟹ XP_017446215

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 90,180,598 (-)	NCBI
mRatBN7.2	2	87,482,747 - 88,273,194 (-)	NCBI
Rnor_6.0	2	89,039,990 - 89,841,610 (-)	NCBI

Sequence:

show sequence

GTGCGCGTGTGCGCGCCGGTTCCTGGCTGTGTCCGAGCCCGCAATGGGGAAAGCTGCGCCGGGA
GCCAGAACCAAAGTGCTCTCGGGGCCGCGTTGGTTATGAAGATGCACACACCCCCCTCCCCCGG
TGGCGCCTAGGCTAGGGTGACTGCTGGGGAACCGAAGCTCGGCGGGCGGTCGGGCAAGTTAGCC
TGAACCACCCGCAGCACAGGAATCCGAGGGCCCCGCAGGGCGCTGGCCTTGGGGTGATCCCGCC
CTTTGGGCGCGGGAGATGGAGAGGTGAAGGGGCGGGGACCGCGGCCGCCCCGGGGCTGGCGGCT
GGTCAGGCGGCCAGAGCTCGAGGTGTCTAGGATGGCAGCGGTCCCTGAGCGCCTCTCTCTTGCC
TCTGCGCCCCGCGGGAGCAGTGCAGTGGGTTCTTCCCAACCGCCTCCGCTAGCTCTGGCGGTTT
CACATCTTCCTTGTGGTTTCCCTCATGTTTTCCCGGCGGCGTCGCGTTGGTTTTAAGCCCTTGC
TGGTGTCTTCTGAGAGGGAATGGTCACTTGTACCGGTGCATACTTGCGTTTAATGAGACGACGC
CTACAAGGATTAAAACAAGGTGAACCAACCATGACCGGCAAAACACAAACAAGCAATGTTACCA
ATAAGAATGACCCCAAGTCCATCAACTCCCGGGTTTTCATCGGCAATTTGAATACAGCCATTGT
CAAGAAAGTCGACATTGAAGCTATTTTTTCAAAGTATGGAAAAATCGTTGGCTGCTCTGTTCAC
AAAGGGTATGCTTTCGTTCAGTACATGAGTGAACGGCATGCAAGAGCTGCGGTGGCTGGAGAAA
ATGCCAGGGTCATCGCAGGCCAGCCTCTTGATATCAACATGGCAGGGGAACCCAAACCATACAG
ACCAAAGCCTGGAAGTAAGAGGCCCTTGTCTGCGCTTTACAGGCTTGAATCAAAGGAGCCATTC
CTGTCTGTTGGTGGTTATGTATTTGACTACGATTACTACAGAGATGATTTCTACAATCGGCTGT
TTGATTACCATGGCCGTGTACCTCCGCCTCCTCGAGCTGTCATCCCACTTAAACGTCCCAGAGT
GGCTGTCACCACCACACGCAGGGGAAAAGGTGTCTTTTCCATGAAAGGGGGATCCAGATCTTCT
GTTGGTGGGTCATCTTCATCAGGCTCTAAGTTGAAATCAGATGAGTTACAGACAATCAAGAAAG
AATTAACCCAGATCAAAACTAAAATTGACTCCTTGCTAGGGCGCCTGGAGAAGATTGAGAAGCA
GCAAAAGGCAGAAGCAGTTTCTACAGATAAAGTGATATGAAGTAGTGTACACTAGTGCAAAAGA
AGAAAAGAGAAATTGTGACATGCGGAAAAAGGAGAAAGATGGTTTCATAATGGACAGCAACATC
TGAAATTCAGTTTATATAAAATCCTCAGTCATGGACAGTGCTGTTCACTTCCAGAAATACCATT
TCTTCTGTGTCCCAAGCTGTACAATTGTTGTTTTATGGTTTACATTGTAAATGTGTTTTCCCTC
TTGCTTATTATGTTTTTTAAGTCTTAAATTGTGAAGGATGTTAATGAATGGTGAGAGAGACACT
GTATACAAATGTATATTTGTAAAAGCTATTTTTATGATTAGCATGTGTCATTGTTGATCACATT
GTCATGTGGTGTTGCAATCCTACATTTAAAGCTTGTTTCCAACAATGTCATAGGGAAAATATAC
ATTGTATGCTAGTTTTTATAATTTAATTTCAATTTATAGTTTAAAGTACCTTAGACCATGAGAA
AATCTATTTGAAAAGCTATATTTCTGCCCTCTATAAGCACCATGTTTATTAATAAAGAATGCAG
TTATTTCAGAAGTGATGCAAGAGTTTAAGGACTTTGGTTTGACCTGTGAGCATGCTTGTCTCTA
GTGAGCTGAAATGATCCAATCATCACCTATTTCCTGAGTCTGAGCTTCTGTGGACAGTTTTCAG
TACTCACAGATGAGAAGTAGATTGATAAGAAAAAGATTTTCTTGTCCTTGGATTCAAACGTTTC
AGTTAGTGCACACCCCCTCCATCTGACCTCCTAGTCCTCAGAATCCTCCATTTCCAAGCATTGT
GTTTTCCAAATCCTCTTGGCTATTGTCTCTCGTGCAGTGGAAATGGAAGAGACCATCCCCACAG
ACTATAGGCACATTCAGCACATAATTTCTTAATAAATACTGGTTCTTTTAAAACAAAGTTGGTC
TTTGGTTTTTCTTTGGTTTGTGCTTGTTTTAACATTCAATGTGAACATTTTGCATCTCTACAAT
GGGATAAAAACAAGTCCAATAATAAAATCAGAGTGACTACACTGAAATATGTTCTGGATGTGTA
CTCCTCATGGCATGCCTGTGTTTTAACACACATTAACTTGCTACACAAAAGAAAACCAAATGGC
CCTGCATTCTTGACAAAAGTCACCATCTAATTTTCATTTTGAGAATGTGTATGCTTCTGCGTAT
TGAATGATAATAAAACATTTCTAGATATAAATTTATCTACCTCATCATGAGGTCTCGATTTTCG
ATCAGATCATAAGTTTGTTGCTAGATATTTTCAAAGTTTCACTAAAGAGCTTATGACAATTTCC
ATCCACATTAGTTTTGCTACTTACACTGCTTCATTATATCAAACCATATGTTTTTACACGGGAA
CTGGAGAGCACCAGAATCACCCCAGTGTGGTTTTTGCTAAGTTTCTTCCTAATGACTTCAAAAC
AGTTTATTTCATACTGATTCTTTGTATTTTAAACATAATCAAATTCAAAAATAACTTATATCAA
ACGCCAACATTTTCAACTAAGATTTTGGGAGAAAAATTATGAGTCAAATTTACTAGAGAATACA
AATGTGCTATTTTACTTTTTCTTGCATGTTATGTATGTTTATGTGCACACATATGTATATTGTT
ATTGTTTGTTTCCTTACTCTGTAGACTGTTGATATTCAAATACAATGTTTCATGCATAATAGGC
AAGAATTCTACCTCTGCCACATCTCCTTTATACTTTCTTGTTTGAGAGGAGTGGATTGAATTTT
TAGAAATTCGAGCAATAACAGCTAAGATCCAGATTGAAAGGCTCTCTAGCAGACCCAAGCACTG
CAGACAGATTTTGCCCTCTCCCCATCCCTCTCCCTTTGTAAACCTTTTGGTTATATTTTCAAGT
TAGCTCTCAATGTCTCTTCCTTTATTTGACCACTGACTTATTCCTGAGACAAATAGCCAAGGAT
CAAGTATCAATCCTTTAAGATCCTTAAGATCAAAATTCATCATTTGGCTACAATGGCTAACCTG
CTATCTTTTCAGGAATAACCAATTCATACTAGCACAAACTTCCTCCTTTTCTCCTTAAAATCCC
ATTCCTGCAAAAAAGCACTTGCTGCTTGCTCTCTTCATTTGCTCCATCCAGAAGCAACCTCCAC
CCACTTATTTGTCCCTCAATGGTAATAAATCTCCATTGTGCTGAGAACTTGTTGCCTGAGTATG
TATATACCAACTCTGAGGAGACCCCTTGCACAGATTATCATTGCTCATCCCTTGTTTGGAAACA
TGAAAAGCATAAGATGGCTATAGTAAGTTACAAGACAAGGTGAGACTAATCAAAGCTTGATTCA
ATGTGTTATATTGTTTTATGTATACTGATTTACTTCCAAATATGCATATTTTGTATGAATAATG
GGATGCTTCCTTGCCTACACTGTGTACCAGGAAATAGCATCTATGAGTATTTTCCAAATATGTC
ATCTATCTGCCTTTATAGTAGTCAATAAAGACAAATGATACCACCATGGTGAGGTCAA

hide sequence

RefSeq Acc Id:

XM_017590727 ⟹ XP_017446216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 90,181,676 (-)	NCBI
mRatBN7.2	2	87,482,747 - 88,274,329 (-)	NCBI
Rnor_6.0	2	89,039,990 - 89,842,784 (-)	NCBI

Sequence:

show sequence

CAAGGAGGCCCGCCTCGCCCGGCTCCCACCGCCGCGCCTGCCCAAGCCGCTCAGAGGGCTTCGA
GGGCTCCGAGGTCGCCCAGCAGCCGCGGTCCCCCGCCGCCTGCAAGTCCGCCTGGCTCCGAATC
ACGTGTCAGTGCCCGAGGCAGAGACTGAGAAAAAAACGCGCTTCATTCCTTCTTCCACCGCCAT
ACTGTATTTTCCTAAATCTCATTTTTATTCCAACATTTTACTCCCGCTCGGATTAAAACAAGGT
GAACCAACCATGACCGGCAAAACACAAACAAGCAATGTTACCAATAAGAATGACCCCAAGTCCA
TCAACTCCCGGGTTTTCATCGGCAATTTGAATACAGCCATTGTCAAGAAAGTCGACATTGAAGC
TATTTTTTCAAAGTATGGAAAAATCGTTGGCTGCTCTGTTCACAAAGGGTATGCTTTCGTTCAG
TACATGAGTGAACGGCATGCAAGAGCTGCGGTGGCTGGAGAAAATGCCAGGGTCATCGCAGGCC
AGCCTCTTGATATCAACATGGCAGGGGAACCCAAACCATACAGACCAAAGCCTGGAAGTAAGAG
GCCCTTGTCTGCGCTTTACAGGCTTGAATCAAAGGAGCCATTCCTGTCTGTTGGTGGTTATGTA
TTTGACTACGATTACTACAGAGATGATTTCTACAATCGGCTGTTTGATTACCATGGCCGTGTAC
CTCCGCCTCCTCGAGCTGTCATCCCACTTAAACGTCCCAGAGTGGCTGTCACCACCACACGCAG
GGGAAAAGGTGTCTTTTCCATGAAAGGGGGATCCAGATCTTCTGTTGGTGGGTCATCTTCATCA
GGCTCTAAGTTGAAATCAGATGAGTTACAGACAATCAAGAAAGAATTAACCCAGATCAAAACTA
AAATTGACTCCTTGCTAGGGCGCCTGGAGAAGATTGAGAAGCAGCAAAAGGCAGAAGCAGAAGC
TCAGAAGAAGCAATTGGAGGAGAGTATAGAGCTGATCCAAGACGAATGTGTGTCAGAGAATGCA
GACCACTCCACAGAGGAGCCTGCTGAAGGAGGGCAAGAAGCGGATGGAGGAGAGATGACTGATG
GGGTAGAGGAGGACTTCGATGAAGATGGGGGTCACGAGCTGTTTCTACAGATAAAGTGATATGA
AGTAGTGTACACTAGTGCAAAAGAAGAAAAGAGAAATTGTGACATGCGGAAAAAGGAGAAAGAT
GGTTTCATAATGGACAGCAACATCTGAAATTCAGTTTATATAAAATCCTCAGTCATGGACAGTG
CTGTTCACTTCCAGAAATACCATTTCTTCTGTGTCCCAAGCTGTACAATTGTTGTTTTATGGTT
TACATTGTAAATGTGTTTTCCCTCTTGCTTATTATGTTTTTTAAGTCTTAAATTGTGAAGGATG
TTAATGAATGGTGAGAGAGACACTGTATACAAATGTATATTTGTAAAAGCTATTTTTATGATTA
GCATGTGTCATTGTTGATCACATTGTCATGTGGTGTTGCAATCCTACATTTAAAGCTTGTTTCC
AACAATGTCATAGGGAAAATATACATTGTATGCTAGTTTTTATAATTTAATTTCAATTTATAGT
TTAAAGTACCTTAGACCATGAGAAAATCTATTTGAAAAGCTATATTTCTGCCCTCTATAAGCAC
CATGTTTATTAATAAAGAATGCAGTTATTTCAGAAGTGATGCAAGAGTTTAAGGACTTTGGTTT
GACCTGTGAGCATGCTTGTCTCTAGTGAGCTGAAATGATCCAATCATCACCTATTTCCTGAGTC
TGAGCTTCTGTGGACAGTTTTCAGTACTCACAGATGAGAAGTAGATTGATAAGAAAAAGATTTT
CTTGTCCTTGGATTCAAACGTTTCAGTTAGTGCACACCCCCTCCATCTGACCTCCTAGTCCTCA
GAATCCTCCATTTCCAAGCATTGTGTTTTCCAAATCCTCTTGGCTATTGTCTCTCGTGCAGTGG
AAATGGAAGAGACCATCCCCACAGACTATAGGCACATTCAGCACATAATTTCTTAATAAATACT
GGTTCTTTTAAAACAAAGTTGGTCTTTGGTTTTTCTTTGGTTTGTGCTTGTTTTAACATTCAAT
GTGAACATTTTGCATCTCTACAATGGGATAAAAACAAGTCCAATAATAAAATCAGAGTGACTAC
ACTGAAATATGTTCTGGATGTGTACTCCTCATGGCATGCCTGTGTTTTAACACACATTAACTTG
CTACACAAAAGAAAACCAAATGGCCCTGCATTCTTGACAAAAGTCACCATCTAATTTTCATTTT
GAGAATGTGTATGCTTCTGCGTATTGAATGATAATAAAACATTTCTAGATATAAATTTATCTAC
CTCATCATGAGGTCTCGATTTTCGATCAGATCATAAGTTTGTTGCTAGATATTTTCAAAGTTTC
ACTAAAGAGCTTATGACAATTTCCATCCACATTAGTTTTGCTACTTACACTGCTTCATTATATC
AAACCATATGTTTTTACACGGGAACTGGAGAGCACCAGAATCACCCCAGTGTGGTTTTTGCTAA
GTTTCTTCCTAATGACTTCAAAACAGTTTATTTCATACTGATTCTTTGTATTTTAAACATAATC
AAATTCAAAAATAACTTATATCAAACGCCAACATTTTCAACTAAGATTTTGGGAGAAAAATTAT
GAGTCAAATTTACTAGAGAATACAAATGTGCTATTTTACTTTTTCTTGCATGTTATGTATGTTT
ATGTGCACACATATGTATATTGTTATTGTTTGTTTCCTTACTCTGTAGACTGTTGATATTCAAA
TACAATGTTTCATGCATAATAGGCAAGAATTCTACCTCTGCCACATCTCCTTTATACTTTCTTG
TTTGAGAGGAGTGGATTGAATTTTTAGAAATTCGAGCAATAACAGCTAAGATCCAGATTGAAAG
GCTCTCTAGCAGACCCAAGCACTGCAGACAGATTTTGCCCTCTCCCCATCCCTCTCCCTTTGTA
AACCTTTTGGTTATATTTTCAAGTTAGCTCTCAATGTCTCTTCCTTTATTTGACCACTGACTTA
TTCCTGAGACAAATAGCCAAGGATCAAGTATCAATCCTTTAAGATCCTTAAGATCAAAATTCAT
CATTTGGCTACAATGGCTAACCTGCTATCTTTTCAGGAATAACCAATTCATACTAGCACAAACT
TCCTCCTTTTCTCCTTAAAATCCCATTCCTGCAAAAAAGCACTTGCTGCTTGCTCTCTTCATTT
GCTCCATCCAGAAGCAACCTCCACCCACTTATTTGTCCCTCAATGGTAATAAATCTCCATTGTG
CTGAGAACTTGTTGCCTGAGTATGTATATACCAACTCTGAGGAGACCCCTTGCACAGATTATCA
TTGCTCATCCCTTGTTTGGAAACATGAAAAGCATAAGATGGCTATAGTAAGTTACAAGACAAGG
TGAGACTAATCAAAGCTTGATTCAATGTGTTATATTGTTTTATGTATACTGATTTACTTCCAAA
TATGCATATTTTGTATGAATAATGGGATGCTTCCTTGCCTACACTGTGTACCAGGAAATAGCAT
CTATGAGTATTTTCCAAATATGTCATCTATCTGCCTTTATAGTAGTCAATAAAGACAAATGATA
CCACCATGGTGAGGTCAA

hide sequence

RefSeq Acc Id:

XM_039101952 ⟹ XP_038957880

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 90,180,599 (-)	NCBI
mRatBN7.2	2	87,482,747 - 88,273,196 (-)	NCBI

RefSeq Acc Id:

XM_039101954 ⟹ XP_038957882

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 90,181,263 (-)	NCBI
mRatBN7.2	2	87,482,747 - 88,274,230 (-)	NCBI

RefSeq Acc Id:

XM_063281532 ⟹ XP_063137602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 90,181,676 (-)	NCBI

RefSeq Acc Id:

XM_063281534 ⟹ XP_063137604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 89,658,755 (-)	NCBI

RefSeq Acc Id:

XM_063281535 ⟹ XP_063137605

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	89,390,212 - 89,596,236 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020149	(Get FASTA)	NCBI Sequence Viewer
	NP_001380699	(Get FASTA)	NCBI Sequence Viewer
	XP_008759075	(Get FASTA)	NCBI Sequence Viewer
	XP_017446211	(Get FASTA)	NCBI Sequence Viewer
	XP_017446213	(Get FASTA)	NCBI Sequence Viewer
	XP_017446215	(Get FASTA)	NCBI Sequence Viewer
	XP_017446216	(Get FASTA)	NCBI Sequence Viewer
	XP_038957880	(Get FASTA)	NCBI Sequence Viewer
	XP_038957882	(Get FASTA)	NCBI Sequence Viewer
	XP_063137602	(Get FASTA)	NCBI Sequence Viewer
	XP_063137604	(Get FASTA)	NCBI Sequence Viewer
	XP_063137605	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92614	(Get FASTA)	NCBI Sequence Viewer
	EDM00973	(Get FASTA)	NCBI Sequence Viewer
	EDM00974	(Get FASTA)	NCBI Sequence Viewer
	EDM00975	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015195
	ENSRNOP00000015195.7
	ENSRNOP00000063407
	ENSRNOP00000063407.4
	ENSRNOP00000077377
	ENSRNOP00000077377.2
	ENSRNOP00000094728
	ENSRNOP00000094728.1
	ENSRNOP00000107066
	ENSRNOP00000107066.1

RefSeq Acc Id:	NP_001020149 ⟸ NM_001024978
- Peptide Label:	isoform 2
- UniProtKB:	Q569A4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGEPKPYRPKPGSKRPLSALYRLESKEPFLSVGLFDYHGRVPPPPRAVIPLKRPRVAVTTTRR GKGVFSMKGGSRSSVGGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAVS TDKVI hide sequence

RefSeq Acc Id:	XP_008759075 ⟸ XM_008760853
- Peptide Label:	isoform X6
- UniProtKB:	A6IH26 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTMYRSKRRHQRYINMAGEPKPYRPKPGSKRPLSALYRLESKEPFLSVGGYVFDYDYYRDDFYN RLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSSVGGSSSSGSKLKSDELQTI KKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESIELIQDECVSENADHSTEEPAEGGQ EADGGEMTDGVEEDFDEDGGHELFLQIK hide sequence

RefSeq Acc Id:	XP_017446216 ⟸ XM_017590727
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AIC1 (UniProtKB/TrEMBL), A6IH25 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMS ERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGSKRPLSALYRLESKEPFLSVGGYVFDY DYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSSVGGSSSSGSK LKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESIELIQDECVSENADHS TEEPAEGGQEADGGEMTDGVEEDFDEDGGHELFLQIK hide sequence

RefSeq Acc Id:	XP_017446213 ⟸ XM_017590724
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AIC1 (UniProtKB/TrEMBL), A6IH25 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMS ERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGSKRPLSALYRLESKEPFLSVGGYVFDY DYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSSVGGSSSSGSK LKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESIELIQDECVSENADHS TEEPAEGGQEADGGEMTDGVEEDFDEDGGHELFLQIK hide sequence

RefSeq Acc Id:

XP_017446215 ⟸ XM_017590726

- Peptide Label:

isoform X4

- Sequence:

show sequence

MVTCTGAYLRLMRRRLQGLKQGEPTMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIE
AIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGSK
RPLSALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTR
RGKGVFSMKGGSRSSVGGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAV
STDKVI

hide sequence

RefSeq Acc Id:	XP_017446211 ⟸ XM_017590722
- Peptide Label:	isoform X1
- UniProtKB:	D3ZW44 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVTCTGAYLRLMRRRLQGLKQGEPTMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIE AIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGSK RPLSALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTR RGKGVFSMKGGSRSSVGGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAE AQKKQLEESIELIQDECVSENADHSTEEPAEGGQEADGGEMTDGVEEDFDEDGGHELFLQIK hide sequence

Ensembl Acc Id:

ENSRNOP00000015195 ⟸ ENSRNOT00000015195

RefSeq Acc Id:	XP_038957882 ⟸ XM_039101954
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AIC1 (UniProtKB/TrEMBL), A6IH25 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038957880 ⟸ XM_039101952
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000077377 ⟸ ENSRNOT00000096427

Ensembl Acc Id:

ENSRNOP00000094728 ⟸ ENSRNOT00000100768

Ensembl Acc Id:

ENSRNOP00000063407 ⟸ ENSRNOT00000068507

RefSeq Acc Id:	NP_001380699 ⟸ NM_001393770
- Peptide Label:	isoform 1
- UniProtKB:	F7F855 (UniProtKB/TrEMBL), Q569A4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137602 ⟸ XM_063281532
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063137604 ⟸ XM_063281534
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063137605 ⟸ XM_063281535
- Peptide Label:	isoform X8

Ensembl Acc Id:

ENSRNOP00000107066 ⟸ ENSRNOT00000158783

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZW44-F1-model_v2	AlphaFold	D3ZW44	1-91	view protein structure
AF-F7F855-F1-model_v2	AlphaFold	F7F855	1-148	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305844	AgrOrtholog
BioCyc Gene	G2FUF-53796	BioCyc
Ensembl Genes	ENSRNOG00000011400	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015195	ENTREZGENE
	ENSRNOT00000015195.8	UniProtKB/TrEMBL
	ENSRNOT00000068507	ENTREZGENE
	ENSRNOT00000068507.5	UniProtKB/TrEMBL
	ENSRNOT00000096427	ENTREZGENE
	ENSRNOT00000096427.2	UniProtKB/TrEMBL
	ENSRNOT00000100768	ENTREZGENE
	ENSRNOT00000100768.2	UniProtKB/TrEMBL
	ENSRNOT00000158783	ENTREZGENE
	ENSRNOT00000158783.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7311942	IMAGE-MGC_LOAD
InterPro	hnRNP_C	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
	RRM_HNRPC/RALY_subfam	UniProtKB/TrEMBL
KEGG Report	rno:294883	UniProtKB/TrEMBL
MGC_CLONE	MGC:109273	IMAGE-MGC_LOAD
NCBI Gene	294883	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	UniProtKB/TrEMBL
	RNA-BINDING RALY-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PhenoGen	Ralyl	PhenoGen
PIRSF	hnRNP-C_Raly	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011400	RatGTEx
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I5Y688_RAT	UniProtKB/TrEMBL
	A0A8I6AIC1	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L9N4_RAT	UniProtKB/TrEMBL
	A6IH25	ENTREZGENE, UniProtKB/TrEMBL
	A6IH26	ENTREZGENE, UniProtKB/TrEMBL
	D3ZW44	ENTREZGENE, UniProtKB/TrEMBL
	F7F855	ENTREZGENE, UniProtKB/TrEMBL
	Q569A4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-23	Ralyl	RALY RNA binding protein-like	RGD1305844	hypothetical LOC294883	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1305844	hypothetical LOC294883	RGD1305844_predicted	hypothetical LOC294883 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1305844_predicted	hypothetical LOC294883 (predicted)	LOC294883_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC294883_predicted	hypothetical LOC294883 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD