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Gene: Depdc1b (DEP domain containing 1B) Rattus norvegicus

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Symbol:

Depdc1b

Name:

DEP domain containing 1B

RGD ID:

1305799

Description:

Predicted to enable GTPase activator activity. Predicted to be involved in cell migration and positive regulation of Wnt signaling pathway. Orthologous to human DEPDC1B (DEP domain containing 1B); INTERACTS WITH 1,3-dinitrobenzene; 1-naphthyl isothiocyanate; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

DEP domain-containing protein 1B; LOC310074

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DEPDC1B (DEP domain containing 1B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Depdc1b (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Depdc1b (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DEPDC1B (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DEPDC1B (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Depdc1b (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DEPDC1B (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DEPDC1B (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Depdc1b (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Depdc1b (DEP domain containing 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	DEPDC1B (DEP domain containing 1B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Depdc1b (DEP domain containing 1B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	depdc1b (DEP domain containing 1B)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	depdc1b (DEP domain containing 1B)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	depdc1b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	depdc1b	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	41,605,686 - 41,697,207 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	41,624,922 - 41,697,202 (+)	Ensembl				GRCr8
mRatBN7.2	2	39,891,163 - 39,963,779 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	39,891,481 - 39,963,779 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	46,999,622 - 47,072,141 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	45,058,313 - 45,130,810 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	39,901,707 - 39,974,649 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	39,980,796 - 40,069,982 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	40,000,313 - 40,069,975 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	59,075,277 - 59,147,317 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	39,632,210 - 39,700,199 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	35,731,136 - 35,799,432 (+)	NCBI		Celera
RGSC_v3.1	2	39,552,625 - 39,619,745 (+)	NCBI
Cytogenetic Map	2	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

hepatocellular carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,3-dinitrobenzene (EXP)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-diaminotoluene (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

antimycin A (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

azathioprine (ISO)

azoxystrobin (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

beta-naphthoflavone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

DDE (ISO)

deguelin (ISO)

diallyl trisulfide (ISO)

dibenzo[a,l]pyrene (ISO)

dicrotophos (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenpyroximate (ISO)

formaldehyde (ISO)

FR900359 (ISO)

furan (EXP)

genistein (ISO)

irinotecan (ISO)

lead(0) (ISO)

lucanthone (ISO)

methyl methanesulfonate (ISO)

methylparaben (ISO)

monosodium L-glutamate (ISO)

N-ethyl-N-nitrosourea (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

palbociclib (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

picoxystrobin (ISO)

pravastatin (EXP,ISO)

progesterone (ISO)

propanal (ISO)

pyrimidifen (ISO)

quercetin (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (EXP,ISO)

tetrachloroethene (ISO)

thapsigargin (ISO)

thifluzamide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

tunicamycin (ISO)

valproic acid (ISO)

zalcitabine (EXP)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell migration (IEA,ISO)

intracellular signal transduction (IEA)

positive regulation of Wnt signaling pathway (IBA,IEA,ISO)

signal transduction (IEA)

Molecular Function

GTPase activator activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:24971537

Genomics

Comparative Map Data

Depdc1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	41,605,686 - 41,697,207 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	41,624,922 - 41,697,202 (+)	Ensembl				GRCr8
mRatBN7.2	2	39,891,163 - 39,963,779 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	39,891,481 - 39,963,779 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	46,999,622 - 47,072,141 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	45,058,313 - 45,130,810 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	39,901,707 - 39,974,649 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	39,980,796 - 40,069,982 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	40,000,313 - 40,069,975 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	59,075,277 - 59,147,317 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	39,632,210 - 39,700,199 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	35,731,136 - 35,799,432 (+)	NCBI		Celera
RGSC_v3.1	2	39,552,625 - 39,619,745 (+)	NCBI
Cytogenetic Map	2	q14	NCBI

DEPDC1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	60,596,912 - 60,700,166 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	60,596,912 - 60,700,194 (-)	Ensembl			hg38	GRCh38
GRCh37	5	59,892,739 - 59,995,993 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	59,928,496 - 60,031,713 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	59,928,496 - 60,031,713	NCBI
Celera	5	56,833,846 - 56,936,903 (-)	NCBI		Celera
Cytogenetic Map	5	q12.1	NCBI
HuRef	5	56,850,495 - 56,954,045 (-)	NCBI		HuRef
CHM1_1	5	59,892,397 - 59,995,471 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	61,415,059 - 61,518,602 (-)	NCBI		T2T-CHM13v2.0

Depdc1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	108,452,592 - 108,526,100 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	108,452,866 - 108,544,316 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	108,316,014 - 108,389,566 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	108,316,332 - 108,407,782 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	109,106,531 - 109,179,751 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	109,437,084 - 109,510,306 (+)	NCBI		MGSCv36	mm8
Celera	13	112,655,500 - 112,730,861 (+)	NCBI		Celera
Cytogenetic Map	13	D2.1	NCBI
cM Map	13	59.69	NCBI

Depdc1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955446	7,792,756 - 7,858,615 (+)	Ensembl
ChiLan1.0	NW_004955446	7,792,778 - 7,857,218 (+)	NCBI	ChiLan1.0	ChiLan1.0

DEPDC1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	53,210,964 - 53,317,425 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	51,364,592 - 51,471,053 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	53,300,423 - 53,406,947 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	54,940,401 - 55,046,660 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	54,951,596 - 55,045,820 (+)	Ensembl			panPan2	panpan1.1

DEPDC1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	47,295,970 - 47,369,234 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	47,296,656 - 47,482,064 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	44,371,766 - 44,454,032 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	47,772,941 - 47,855,265 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	47,773,401 - 47,855,232 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	44,843,626 - 44,925,660 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	45,622,925 - 45,705,207 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	46,481,956 - 46,564,080 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Depdc1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	198,786,842 - 198,905,014 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	7,750,241 - 7,841,536 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	7,750,244 - 7,841,556 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DEPDC1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	39,466,497 - 39,557,840 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	39,466,496 - 39,558,750 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	42,377,619 - 42,469,742 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DEPDC1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	56,770,728 - 56,882,062 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	56,770,727 - 56,863,006 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666049	5,256,122 - 5,372,172 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Depdc1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624815	9,289,292 - 9,371,716 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624815	9,289,221 - 9,372,580 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Depdc1b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	188,576,102 - 188,645,001 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Depdc1b
731 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	299
Count of miRNA genes:	191
Interacting mature miRNAs:	230
Transcripts:	ENSRNOT00000014270
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755430	Coatc6	Coat color QTL 6		0.02576	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	13325041	58325041	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	42977529	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1300160	Hrtrt3	Heart rate QTL 3	3.62		heart pumping trait (VT:2000009)	absolute change in heart rate (CMO:0000534)	2	35614083	53462005	Rat
1579916	Bp270	Blood pressure QTL 270		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	16051883	61051883	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9685065	Swd6	Spike wave discharge measurement QTL 6	5.8	0.01	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge rate (CMO:0001739)	2	40957423	50526673	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
1331764	Bp205	Blood pressure QTL 205	3.476		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	14368707	59368707	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	44538110	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	38426449	111295694	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Markers in Region

RH133367

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	39,963,450 - 39,963,644 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	40,069,647 - 40,069,840	NCBI	Rnor6.0
Rnor_5.0	2	59,146,982 - 59,147,175	UniSTS	Rnor5.0
RGSC_v3.4	2	39,699,871 - 39,700,064	UniSTS	RGSC3.4
Celera	2	35,799,104 - 35,799,297	UniSTS
RH 3.4 Map	2	179.2	UniSTS
Cytogenetic Map	2	q14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	66	162	87	86	55	90	55	6	348	188	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014270 ⟹ ENSRNOP00000014270

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	41,624,922 - 41,697,202 (+)	Ensembl
mRatBN7.2 Ensembl	2	39,891,481 - 39,963,779 (+)	Ensembl
Rnor_6.0 Ensembl	2	40,000,313 - 40,069,975 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094559 ⟹ ENSRNOP00000089174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	41,624,922 - 41,696,379 (+)	Ensembl
mRatBN7.2 Ensembl	2	39,891,481 - 39,962,956 (+)	Ensembl

RefSeq Acc Id:

NM_001107651 ⟹ NP_001101121

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	41,624,922 - 41,697,202 (+)	NCBI
mRatBN7.2	2	39,891,481 - 39,963,779 (+)	NCBI
Rnor_6.0	2	40,000,313 - 40,069,975 (+)	NCBI
Rnor_5.0	2	59,075,277 - 59,147,317 (+)	NCBI
RGSC_v3.4	2	39,632,210 - 39,700,199 (+)	RGD
Celera	2	35,731,136 - 35,799,432 (+)	RGD

Sequence:

show sequence

CTCCCGGCTTGTGATTCAAACTGCGGCGCGGTGAGTTCTGTGGTCCGCGCTGGCGTTGCCCCAC
CACTGCTGCGGGTTGGGAATGGAGCACCGCATAGTGGGACCCGGGCCGTACCGAGCCACCAGGC
TGTGGAACGAAACAGTGGAGCTTTTCCGGGCCAGGATGCCTTTACGGAAACATCGTTGTCGGTT
CAAGAGTTATGAGCATTGCTTCACGGCATCGGAGGCTGTGGACTGGCTGCACGAGCTTCTGAGA
AACAGTCAAAACTTTGGCCCCGAGGTAACTCGCAAGCAAACAGTCCAGCTGCTGAGAAAATTCC
TCAAGAATCACGTTATCGAGGACATCAAGGGAAAATGGGGCCAGGAGGACTTTGAAGACAACCG
TCACCTGTACAGATTTCCTCCTTCCTCACCCCTGAAGCCATATCCAAAGAAGCCCCTGTATCAA
AGAGATGTTATTAAGTTTCCAGAATGGAATGATCCCCCGCCAGGCACTTCACAGGAGAACATTC
CAGTGAGGCCGATTGTGATGAACTCTGAGATGTGGTTCAAGCGCCACAGTATTGCTATTGGAGA
GGTGCCCGCGTGCCGTCTCATCCACCGCAGACAGCTGACCGAGGCCAATGTGGAAGAGATCTGG
AAGTCTACGACGTTGTCACATTTACAGAGAATTCTTGGCCTTGATTCCTTGGAAGAAGTTTTAA
ACACAAAGCTTGTCAACTCCAAGTTCATCATCCATAATGTGTATAGTGTCAGCAAGCAGGGAGT
GGTCATCTTGGACGACAAGTCGAAAGAACTTCCTCATTGGGTCCTGTCAGCTATGAAGTGTTTG
GCAAATTGGCCCAACTGTACAGATTGGAAGCAGCCTATGTACTTGGGATTTGAAAAGGATGTCT
TTAAAACTATTGCAGATTACTATGGCCACCTGAAGGAGCCACTGCTCACATTTCACCTTTTTGA
TGCTTTCGTCAGTGTATTAGGTTTGCTGCCGAAGGAGCAAATGGCAACTGAGGCGTTTCAGATT
TGCTGTCTCCTTCTGCCTCCTGAAAACAGGAGAAAGTTACAGCTGCTGATGCGGATGATGGCGA
GGATCTGCTTAAACAAAGAGATGCCGCCACTGTGTGATGGCTTCGGCACCCGCACACTGATGGT
TCAGACATTTTCCCGGTGCATCTTGTGTTCGAAGGATGAGGTAGATTTAGATGAGTTACTAGCT
GCTCGGTTGGTGACGTTTCTGATGGACAATTACCAGGAGATTCTGAAAGTCCCTCTGGTCCTGC
AGACCTCCATCGAGGAGCGTGTGGCTCACCTGCGAAGAGTGCAGATAAAATACCCAGGAGCTGA
TATGGACATCACCCTGTCTGCACCTTCATTTTGCCGTCAAATTAGTCCTGAGGAGTTTGAGTAC
CAAAGGGCGTATGGCTCCCAGGAGCCCCTGGCAGCGTTGTTGGAAGAAGTCATTGTTGATGACA
AACTCTCCAACAAGGAGAAGAAGAAGAAGCTGAAGCAGTTTCAGAAATCTTACCCTGAAGTCTA
CCAGGAACGATTTCCTACCCCAGAGAGTGAAGCACTTCTGTTTCCTGAGAAACCCAAGGCCAAA
CCACAGCTGTTCATGTGGGCACTGAGGAAACCTTTCCAGCCGTTTCAGAGAACCAGAAGTTTCC
GGATGTGATGCTGTGACGAAGCTTGAGGGACCTCAGTGGTAGAGACACTTTGAGTCGGTTGAGA
CTCAAGAACGCCGTTATAAACTACTAAATGTGTGGCTTCAGGTCGCCCAACTCCTTAAATGTCG
AGCCGTTGTCAGTATTTGTATAAATCTTGATGCTGTTTGCAGAGATGTACAAATGAGTGAATGA
TCACAAGTCAGGTGTGTAGTGGTGGTGCGAAGAGGCTTGGGATGCTTAAAAAGTCTAAAGGTAA
AGTGTTCCCTTCCTGTTTGTCGTTTTCTGTGGTGTGTAAAGTTTTTGTGCATTGCTCACCCATG
TGTCTGAAAACCAAGCCTATGGATACTGTACATACTTGAATAAGAACAACACTGTGCTGTTACT
GTGGTAGCATCAACCCAGCTGCCAGTTGTGATCTCTCCTGTGTAAATCCCATGGTTTTATTGTC
GTTTGCTTTTATTTTTATTTCTTCTTGTTTTGTTACTGGGAAAAGTCCTCGTGTTTTGCACTGT
GATATCTGTGTCTTTTAGTGCAGATTTGCCTGTTGCTCTTTGAGTACCCGTATGCGGTCTGGGT
CTGCGTGTGTGTGGATGTGGAATAGTATGCATCTGCCCACGGTCCTGTAATTTGAGTCTCAGCT
AAAGATGGAAGGTTGAGCAGGAAGAATTCTTTGGGCTCCCTTGGACCTGTACATCTAAATTAAG
TCTTTGGTTTTATGAAAAGTATAAATGGGTTGAGTAAGATGAATTACTTTCTTTATGAATATAT
TTTTCAGCTTCTTCATTGTTTTAAAAATACATGGAATGTAAATAAATACTGATTTTTTTTTAT

hide sequence

RefSeq Acc Id:

XM_017590823 ⟹ XP_017446312

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	41,624,102 - 41,697,207 (+)	NCBI
mRatBN7.2	2	39,891,163 - 39,963,778 (+)	NCBI
Rnor_6.0	2	39,999,513 - 40,069,982 (+)	NCBI

Sequence:

show sequence

CATAGTAGCTTCTACGATCAAGGAGTTGTTGTTCAGCAGTCTCCCGTCCTCGTCTTCACTTAGG
AGGCCAGGCATCGATCCATAAGCTGAGTTAAAGGCATACAGTAGAAAGTGAAGTCATTTGTCTC
TTTGACCAGTTACAAGTCGGACCAACAATTCTCACGGGCAGAAGTATAGGTGATTCAGTGCAGA
GAAGACGAATTCATCAGCCCCATAAACAAAGGACTGACAATTTCAATCAGATTGCTAAATACGA
AACGTAAGTTCAAGGAGGAGAAAGATTACTGTACTTTATCAAGAGAACACAACAGAAGCTGACC
AGGCCTCCTTATAGTTCAAAAAGTCTTTCCACAGTCCTTATGGCGGACTGCCTTTATCTGCTTT
ATAAATGTTCTTCCTCTTGGACAGCTGTCAACTCGCTTCCTTTCACCACCCACTTCTTCCTCTC
TTTGCTACCCGAGTGTTGACAGGAATTATCTACAGGTTCCAGCTAGGTTTGGCTCACTGGGCTC
TGAGTCTGCAGAGCTCGTGTTCTGAGTGGGCTCGCAGCAGGGAAGGTCCGGGTAGGTAGGGTTT
GGGCAGCGCCATCCATTGCCTGCTAGGCGGTACCCTGCGCCACCAGTCACCTCTGCGAGCGTCT
GAGCGCCCTCTGGCGAGGAGGAAGTGTCTTTCTCTTCTAGCTGCGAGAGGTGAGCTGCGAGAGG
CTCAACCTCGGGTAATGAAATCCAGGACACCCATAGCCCCGCCCACCACGCAGTTCCTGTCACG
TGCCCCGGCGCTGTCCAATCAGCGCCCTGAAGCTCCCGGCTTGTGATTCAAACTGCGGCGCGTG
GAACGAAACAGTGGAGCTTTTCCGGGCCAGGATGCCTTTACGGAAACATCGTTGTCGGTTCAAG
AGTTATGAGCATTGCTTCACGGCATCGGAGGCTGTGGACTGGCTGCACGAGCTTCTGAGAAACA
GTCAAAACTTTGGCCCCGAGGTAACTCGCAAGCAAACAGTCCAGCTGCTGAGAAAATTCCTCAA
GAATCACGTTATCGAGGACATCAAGGGAAAATGGGGCCAGGAGGACTTTGAAGACAACCGTCAC
CTGTACAGATTTCCTCCTTCCTCACCCCTGAAGCCATATCCAAAGAAGCCCCTGTATCAAAGAG
ATGTTATTAAGTTTCCAGAATGGAATGATCCCCCGCCAGGCACTTCACAGGAGAACATTCCAGT
GAGGCCGATTGTGATGAACTCTGAGATGTGGTTCAAGCGCCACAGTATTGCTATTGGAGAGGTG
CCCGCGTGCCGTCTCATCCACCGCAGACAGCTGACCGAGGCCAATGTGGAAGAGATCTGGAAGT
CTACGACGTTGTCACATTTACAGAGAATTCTTGGCCTTGATTCCTTGGAAGAAGTTTTAAACAC
AAAGCTTGTCAACTCCAAGTTCATCATCCATAATGTGTATAGTGTCAGCAAGCAGGGAGTGGTC
ATCTTGGACGACAAGTCGAAAGAACTTCCTCATTGGGTCCTGTCAGCTATGAAGTGTTTGGCAA
ATTGGCCCAACTGTACAGATTGGAAGCAGCCTATGTACTTGGGATTTGAAAAGGATGTCTTTAA
AACTATTGCAGATTACTATGGCCACCTGAAGGAGCCACTGCTCACATTTCACCTTTTTGATGCT
TTCGTCAGTGTATTAGGTTTGCTGCCGAAGGAGCAAATGGCAACTGAGGCGTTTCAGATTTGCT
GTCTCCTTCTGCCTCCTGAAAACAGGAGAAAGTTACAGCTGCTGATGCGGATGATGGCGAGGAT
CTGCTTAAACAAAGAGATGCCGCCACTGTGTGATGGCTTCGGCACCCGCACACTGATGGTTCAG
ACATTTTCCCGGTGCATCTTGTGTTCGAAGGATGAGGTAGATTTAGATGAGTTACTAGCTGCTC
GGTTGGTGACGTTTCTGATGGACAATTACCAGGAGATTCTGAAAGTCCCTCTGGTCCTGCAGAC
CTCCATCGAGGAGCGTGTGGCTCACCTGCGAAGAGTGCAGATAAAATACCCAGGAGCTGATATG
GACATCACCCTGTCTGCACCTTCATTTTGCCGTCAAATTAGTCCTGAGGAGTTTGAGTACCAAA
GGGCGTATGGCTCCCAGGAGCCCCTGGCAGCGTTGTTGGAAGAAGTCATTGTTGATGACAAACT
CTCCAACAAGGAGAAGAAGAAGAAGCTGAAGCAGTTTCAGAAATCTTACCCTGAAGTCTACCAG
GAACGATTTCCTACCCCAGAGAGTGAAGCACTTCTGTTTCCTGAGAAACCCAAGGCCAAACCAC
AGCTGTTCATGTGGGCACTGAGGAAACCTTTCCAGCCGTTTCAGAGAACCAGAAGTTTCCGGAT
GTGATGCTGTGACGAAGCTTGAGGGACCTCAGTGGTAGAGACACTTTGAGTCGGTTGAGACTCA
AGAACGCCGTTATAAACTACTAAATGTGTGGCTTCAGGTCGCCCAACTCCTTAAATGTCGAGCC
GTTGTCAGTATTTGTATAAATCTTGATGCTGTTTGCAGAGATGTACAAATGAGTGAATGATCAC
AAGTCAGGTGTGTAGTGGTGGTGCGAAGAGGCTTGGGATGCTTAAAAAGTCTAAAGGTAAAGTG
TTCCCTTCCTGTTTGTCGTTTTCTGTGGTGTGTAAAGTTTTTGTGCATTGCTCACCCATGTGTC
TGAAAACCAAGCCTATGGATACTGTACATACTTGAATAAGAACAACACTGTGCTGTTACTGTGG
TAGCATCAACCCAGCTGCCAGTTGTGATCTCTCCTGTGTAAATCCCATGGTTTTATTGTCGTTT
GCTTTTATTTTTATTTCTTCTTGTTTTGTTACTGGGAAAAGTCCTCGTGTTTTGCACTGTGATA
TCTGTGTCTTTTAGTGCAGATTTGCCTGTTGCTCTTTGAGTACCCGTATGCGGTCTGGGTCTGC
GTGTGTGTGGATGTGGAATAGTATGCATCTGCCCACGGTCCTGTAATTTGAGTCTCAGCTAAAG
ATGGAAGGTTGAGCAGGAAGAATTCTTTGGGCTCCCTTGGACCTGTACATCTAAATTAAGTCTT
TGGTTTTATGAAAAGTATAAATGGGTTGAGTAAGATGAATTACTTTCTTTATGAATATATTTTT
CAGCTTCTTCATTGTTTTAAAAATACATGGAATGTAAATAAATACTGATTTTTTTTTATATATA
TA

hide sequence

RefSeq Acc Id:

XM_063281722 ⟹ XP_063137792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	41,605,686 - 41,697,207 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101121	(Get FASTA)	NCBI Sequence Viewer
	XP_017446312	(Get FASTA)	NCBI Sequence Viewer
	XP_063137792	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM10314	(Get FASTA)	NCBI Sequence Viewer
	EDM10315	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014270
	ENSRNOP00000014270.5
	ENSRNOP00000089174.1

RefSeq Acc Id:

NP_001101121 ⟸ NM_001107651

- UniProtKB:

D4AA32 (UniProtKB/TrEMBL), A6I5K7 (UniProtKB/TrEMBL), A0A8I6A996 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEHRIVGPGPYRATRLWNETVELFRARMPLRKHRCRFKSYEHCFTASEAVDWLHELLRNSQNFG
PEVTRKQTVQLLRKFLKNHVIEDIKGKWGQEDFEDNRHLYRFPPSSPLKPYPKKPLYQRDVIKF
PEWNDPPPGTSQENIPVRPIVMNSEMWFKRHSIAIGEVPACRLIHRRQLTEANVEEIWKSTTLS
HLQRILGLDSLEEVLNTKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNC
TDWKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLPKEQMATEAFQICCLLLP
PENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTF
LMDNYQEILKVPLVLQTSIEERVAHLRRVQIKYPGADMDITLSAPSFCRQISPEEFEYQRAYGS
QEPLAALLEEVIVDDKLSNKEKKKKLKQFQKSYPEVYQERFPTPESEALLFPEKPKAKPQLFMW
ALRKPFQPFQRTRSFRM

hide sequence

RefSeq Acc Id:	XP_017446312 ⟸ XM_017590823
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A996 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLRKHRCRFKSYEHCFTASEAVDWLHELLRNSQNFGPEVTRKQTVQLLRKFLKNHVIEDIKGK WGQEDFEDNRHLYRFPPSSPLKPYPKKPLYQRDVIKFPEWNDPPPGTSQENIPVRPIVMNSEMW FKRHSIAIGEVPACRLIHRRQLTEANVEEIWKSTTLSHLQRILGLDSLEEVLNTKLVNSKFIIH NVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCTDWKQPMYLGFEKDVFKTIADYYGHLK EPLLTFHLFDAFVSVLGLLPKEQMATEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLC DGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLVLQTSIEERVAHLR RVQIKYPGADMDITLSAPSFCRQISPEEFEYQRAYGSQEPLAALLEEVIVDDKLSNKEKKKKLK QFQKSYPEVYQERFPTPESEALLFPEKPKAKPQLFMWALRKPFQPFQRTRSFRM hide sequence

Ensembl Acc Id:

ENSRNOP00000014270 ⟸ ENSRNOT00000014270

Ensembl Acc Id:

ENSRNOP00000089174 ⟸ ENSRNOT00000094559

RefSeq Acc Id:	XP_063137792 ⟸ XM_063281722
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A996 (UniProtKB/TrEMBL)

Protein Domains

DEP Rho-GAP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AA32-F1-model_v2	AlphaFold	D4AA32	1-529	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691131

Promoter ID:

EPDNEW_R1655

Type:

initiation region

Name:

Depdc1b_1

Description:

DEP domain containing 1B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	40,000,357 - 40,000,417	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305799	AgrOrtholog
BioCyc Gene	G2FUF-54461	BioCyc
Ensembl Genes	ENSRNOG00000010701	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014270	ENTREZGENE
	ENSRNOT00000014270.7	UniProtKB/TrEMBL
	ENSRNOT00000094559.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	1.10.555.10	UniProtKB/TrEMBL
InterPro	DEP_dom	UniProtKB/TrEMBL
	Rho_GTPase_activation_prot	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	rno:310074	UniProtKB/TrEMBL
NCBI Gene	310074	ENTREZGENE
PANTHER	DEP DOMAIN-CONTAINING	UniProtKB/TrEMBL
	DEP DOMAIN-CONTAINING PROTEIN 1B	UniProtKB/TrEMBL
Pfam	DEP	UniProtKB/TrEMBL
	RhoGAP	UniProtKB/TrEMBL
PhenoGen	Depdc1b	PhenoGen
PROSITE	DEP	UniProtKB/TrEMBL
	RHOGAP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010701	RatGTEx
SMART	DEP	UniProtKB/TrEMBL
Superfamily-SCOP	Rho_GAP	UniProtKB/TrEMBL
	SSF46785	UniProtKB/TrEMBL
UniProt	A0A8I6A996	ENTREZGENE, UniProtKB/TrEMBL
	A6I5K7	ENTREZGENE, UniProtKB/TrEMBL
	D4AA32	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Depdc1b	DEP domain containing 1B	Depdc1b_predicted	DEP domain containing 1B (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Depdc1b_predicted	DEP domain containing 1B (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD