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Gene: Phyhip (phytanoyl-CoA 2-hydroxylase interacting protein) Rattus norvegicus

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Symbol:

Phyhip

Name:

phytanoyl-CoA 2-hydroxylase interacting protein

RGD ID:

1305790

Description:

Predicted to enable protein tyrosine kinase binding activity. Predicted to be involved in intracellular protein localization. Predicted to be active in cytoplasm. Orthologous to human PHYHIP (phytanoyl-CoA 2-hydroxylase interacting protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC108348161; LOC290356; PAHX-AP1; PAHXAP1; phytanoyl-CoA hydroxylase interacting protein; phytanoyl-CoA hydroxylase-associated protein 1; phytanoyl-CoA hydroxylase-interacting protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	51,943,670 - 51,954,921 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	51,943,378 - 51,954,920 (+)	Ensembl				GRCr8
mRatBN7.2	15	45,533,974 - 45,545,223 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	45,533,974 - 45,545,221 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	49,651,845 - 49,663,092 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	50,763,358 - 50,774,607 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	47,622,643 - 47,633,888 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	52,148,737 - 52,160,283 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	52,148,379 - 52,160,294 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	15	52,767,442 - 52,778,687 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	55,872,254 - 55,883,802 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	50,860,503 - 50,871,752 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	45,213,030 - 45,224,263 (+)	NCBI		Celera
RGSC_v3.1	15	50,876,282 - 50,887,532 (+)	NCBI
Cytogenetic Map	15	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-butoxyethanol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

cantharidin (ISO)

chlorpyrifos (ISO)

chrysene (ISO)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethylparaben (ISO)

ketamine (EXP)

lead(0) (ISO)

methimazole (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (ISO)

niclosamide (ISO)

okadaic acid (ISO)

PCB138 (ISO)

phenobarbital (EXP)

phenylmercury acetate (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

Soman (EXP)

sotorasib (ISO)

sulforaphane (ISO)

tamibarotene (ISO)

testosterone (ISO)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (EXP)

Triptolide (ISO)

triptonide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein localization (ISO,ISS)

Cellular Component

cytoplasm (IBA,ISO,ISS)

mitochondrion (ISO)

nucleoplasm (ISO)

Molecular Function

protein binding (ISO)

protein tyrosine kinase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15694837	PMID:21700703	PMID:22871113	PMID:25931508	PMID:28131823	PMID:30053369

Genomics

Comparative Map Data

Phyhip
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	51,943,670 - 51,954,921 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	51,943,378 - 51,954,920 (+)	Ensembl				GRCr8
mRatBN7.2	15	45,533,974 - 45,545,223 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	45,533,974 - 45,545,221 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	49,651,845 - 49,663,092 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	50,763,358 - 50,774,607 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	47,622,643 - 47,633,888 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	52,148,737 - 52,160,283 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	52,148,379 - 52,160,294 (+)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	15	52,767,442 - 52,778,687 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	55,872,254 - 55,883,802 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	50,860,503 - 50,871,752 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	45,213,030 - 45,224,263 (+)	NCBI		Celera
RGSC_v3.1	15	50,876,282 - 50,887,532 (+)	NCBI
Cytogenetic Map	15	p11	NCBI

PHYHIP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	22,219,703 - 22,232,099 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	22,219,703 - 22,232,101 (-)	Ensembl			hg38	GRCh38
GRCh37	8	22,077,216 - 22,089,612 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	22,133,161 - 22,145,796 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	22,133,180 - 22,145,549	NCBI
Celera	8	21,039,919 - 21,052,558 (-)	NCBI		Celera
Cytogenetic Map	8	p21.3	NCBI
HuRef	8	20,619,408 - 20,632,043 (-)	NCBI		HuRef
CHM1_1	8	22,278,877 - 22,291,513 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	22,493,657 - 22,506,054 (-)	NCBI		T2T-CHM13v2.0

Phyhip
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	70,694,957 - 70,706,266 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	70,694,916 - 70,706,272 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	70,457,517 - 70,468,826 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	70,457,476 - 70,468,832 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	70,857,324 - 70,868,631 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	69,189,350 - 69,203,912 (+)	NCBI		MGSCv36	mm8
Celera	14	67,999,012 - 68,010,249 (+)	NCBI		Celera
Cytogenetic Map	14	D2	NCBI
cM Map	14	36.32	NCBI

Phyhip
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	45,695,638 - 45,710,187 (-)	Ensembl
ChiLan1.0	NW_004955403	45,698,936 - 45,710,921 (-)	NCBI	ChiLan1.0	ChiLan1.0

PHYHIP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	40,721,446 - 40,734,078 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	16,446,632 - 16,459,269 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	21,464,544 - 21,477,197 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	18,404,176 - 18,417,035 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	18,404,176 - 18,417,035 (-)	Ensembl			panPan2	panpan1.1

PHYHIP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	35,025,823 - 35,038,513 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	35,026,692 - 35,037,163 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	35,616,891 - 35,628,218 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	35,238,623 - 35,249,960 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	35,238,623 - 35,249,950 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	35,184,131 - 35,195,455 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	35,038,662 - 35,049,983 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	35,194,169 - 35,205,491 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Phyhip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	12,529,844 - 12,541,119 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936555	6,029,347 - 6,040,758 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936555	6,029,393 - 6,040,622 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PHYHIP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	6,494,402 - 6,506,546 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	6,494,395 - 6,506,747 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	6,928,412 - 6,940,757 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PHYHIP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	20,289,215 - 20,301,495 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	20,289,512 - 20,297,577 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666052	21,934,570 - 21,946,861 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Phyhip
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	17,792,745 - 17,804,964 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624758	17,793,805 - 17,804,637 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Phyhip
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	53,882,723 - 53,893,954 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Phyhip
36 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	158
Count of miRNA genes:	114
Interacting mature miRNAs:	122
Transcripts:	ENSRNOT00000014441
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	44806773	104695021	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	31855803	92671517	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	43677244	88677244	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28527732	73527732	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	22336351	52597086	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	40463152	85463152	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	43677244	88677244	Rat
2306968	Anxrr23	Anxiety related response QTL 23	4.83		reflex trait (VT:0001961)	amplitude of the acoustic startle response (CMO:0001520)	15	44806773	52597086	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat
7411725	Strs7	Sensitivity to stroke QTL 7	3.8		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	15	44465447	56583797	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	43677244	88677244	Rat

Markers in Region

AW049870

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	51,954,598 - 51,954,693 (+)	Marker Load Pipeline
mRatBN7.2	15	45,544,899 - 45,544,995 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	52,159,962 - 52,160,057	NCBI	Rnor6.0
Rnor_6.0	15	52,778,370 - 52,778,465	NCBI	Rnor6.0
Rnor_5.0	15	56,501,680 - 56,501,775	UniSTS	Rnor5.0
Rnor_5.0	15	55,883,479 - 55,883,574	UniSTS	Rnor5.0
RGSC_v3.4	15	50,871,431 - 50,871,526	UniSTS	RGSC3.4
Celera	15	45,223,942 - 45,224,037	UniSTS
Cytogenetic Map	15	p11	UniSTS

RH129401

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	45,545,012 - 45,545,209 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	52,778,483 - 52,778,679	NCBI	Rnor6.0
Rnor_6.0	15	52,160,075 - 52,160,271	NCBI	Rnor6.0
Rnor_5.0	15	55,883,592 - 55,883,788	UniSTS	Rnor5.0
Rnor_5.0	15	56,501,793 - 56,501,989	UniSTS	Rnor5.0
RGSC_v3.4	15	50,871,544 - 50,871,740	UniSTS	RGSC3.4
Celera	15	45,224,055 - 45,224,251	UniSTS
Cytogenetic Map	15	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	1	38	149	59	52	27	41	27	12	181	113	11	116	25	81	25	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001017376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC092627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014441 ⟹ ENSRNOP00000014441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	51,943,378 - 51,954,920 (+)	Ensembl
mRatBN7.2 Ensembl	15	45,533,974 - 45,545,221 (+)	Ensembl
Rnor_6.0 Ensembl	15	52,767,442 - 52,778,687 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000074912 ⟹ ENSRNOP00000065015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	15	52,148,379 - 52,160,294 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000147354 ⟹ ENSRNOP00000107566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	51,945,136 - 51,954,920 (+)	Ensembl

RefSeq Acc Id:

NM_001017376 ⟹ NP_001017376

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,943,670 - 51,954,919 (+)	NCBI
mRatBN7.2	15	45,533,974 - 45,545,221 (+)	NCBI
Rnor_6.0	15	52,148,737 - 52,160,283 (+)	NCBI
Rnor_5.0	15	55,872,254 - 55,883,802 (+)	NCBI
RGSC_v3.4	15	50,860,503 - 50,871,752 (+)	RGD
Celera	15	45,213,030 - 45,224,263 (+)	RGD

Sequence:

show sequence

CGCTCTTGCCTCTCTCTTCTTGCGCGTTCACTCGCTGGGTTCCGAGCAGCGTCGTTTTCTTGCC
GGGAGCAGTAGCGGTAGCTGCAGAGCCAGACAGGAGCTGCCTGTGGGGCATGGAAGCCGACTTC
CCAGCAGCCCAGAGAGGAGCGAGCGAGCCCCGCTGCCTGTGACCCAGGCGTCAGGCTGCTGTCC
CCTGCCTGGAGAGCTCATCATCCACACAGAGTCTCTCCCTTCCTTCTCTTCCAAGTATCCCTCT
GCAGGGCCAGCTGAAGCCAGGAGCCAAACCTGAGGGGAACATGGAGCTGCTGTCTACCCCCCAC
AGCATCGAGATCAACAATATCACCTGTGACTCCTTCCGTATCTCCTGGGCCATGGAAGACAGTG
ACCTGGAGAGGGTCACCCATTATTTCATTGACCTGAACAAGAAGGAAAATAAGAATTCCAACAA
GTTCAAGCACCGGGATGTCCCCACCAAGCTCGTGGCCAAGGCTGTGCCTTTGCCCATGACAGTG
AGAGGCCACTGGTTCCTGAGTCCCCGGACAGAGTACAGTGTGGCAGTGCAGACAGCAGTGAAGC
AGAGTGATGGAGAGTACCTGGTGTCTGGCTGGAGCGAGACTGTGGAGTTCTGCACTGGGGACTA
TGCCAAGGAGCACCTTGCCCAGCTGCAGGAGAAGGCTGAGCAGATCGCTGGCCGCATGCTCCGC
TTCTCTGTGTTCTACCGCAACCATCACAAGGAGTACTTCCAGCATGCCAGGACCCACTGTGGGA
ATGTACTACAGCCTTACCTGAAGGACAACAGTGGGAGCCACGGCTCCCCTACCAGTGGCATGCT
GCATGGCGTCTTCTTCAGCTGCAACACGGAGTTCAACACAGGCCAGCCGCCCCAGGACTCCCCT
TATGGCCGCTGGCGCTTCCAGATCCCTGCCCAGCGCCTCTTCAACCCCAGCACCAACCTCTACT
TTGCGGACTTCTACTGTATGTACACAGCCTACCACTATGCCATCCTGGTGCTGGCACCCAAAGG
CTCCCTGGGGGACCGCTTCTGTCGTGACCGTCTGCCCCTCCTGGACATTGCCTGCAACAAGTTC
CTGACCTGCAGTGTGGAGGATGGAGAGCTGATCTTCCGCCATGCTCAGGACCTCATCCTGGAGA
TCATCTACACTGAGCCTGTCGACCTGTCCCTGGGCACCCTGGGAGAAATCAGTGGGCACCAGCT
CATGAGCCTGTCCACTGCTGATGCCAAGAAAGATCCCAGCTGCAAGACCTGCAATATCAGTGTG
GGCCGCTAGGGACTCCTGGGGAGCTGGAGGGCTGGGGAGAGATGACAGCAGGGTGGGGCATGAT
ATATGGCTTAGGTTTGGGGAGCTGGCTTTCTCTCCCCTCTCCCTGCTCCCTCCACTCTGTCCAC
TCCCCCCCCCTGTTTTGAAGACAACAGAAAGTGGTCCTCTTAGTTAGTGGCGTGACCCATTCCA
GGTCTGGTGGACTTGGAGAGGGGGGTTATCAGCAGGTGATAACCTCCCTTTCTGTTTCCCTCTT
CTGTCTTTTGACTTCAAGCAGGCCTCCCTGAGTCCTCAGGCATCTCCCAGAGTCCTCCCCGCCT
CCTGGGCCAAAGCCCATGTGTAGCCTGACCTCCATGTAGATGCAGAAAGCTGTGGGGTACCTCC
TTCCTAGCCCCACCCACCCCACTCAGGGCCACCCCAGACAGCCTCCTTCTTACTCAGCTGGGCC
TGAGGGCTTTTTCCGCCTCCGGACTAGGCCCCTCCCTTTATAAATAACCTCCTGCACTGCTGTC
TTGCCCTGGCTGCTCCTTATCCCCCAGAGCCCATTTCCCGCATGGGAGAACCATCCATCCCTTC
CAACACTGTCGCTGGACCACTTGAGATGCCCTCCCACTCTCTGGGAAAGCACCTTCTCATTTTT
TAGTTTGGAGGGCTTGCTCTGGTCTTTTGAGCTTTTCCTTTCTTCTCTCTGGGGACGATAATAT
CCTCAGCAAACCTCCCTCCTTGCTCAGAGAGCACCAAGGTCTGCCGGGGTCGAGGAGGGGGAAC
CAGACCCCTGAGACCTGTTCCTCAGCCAGAAGCGGGCCACCTCGTGTCTTGACAGGCCTGACAG
AGCTAGAGAACTCCGTGTGACCCACAGAACCCTGGCACCCTGCCCAGCTGTGCACTTTGCTTGC
TCACTCGACCGCTCTGCCTGAGAGTCATGACTGTTCTGTGCCCTGTGAGCCAGATGTTGGGCTC
TCCATCACACTACTACCCCTTGCTCTCTGGGCTGATCCCCTGGGGAGTTCCTGATGAATTCCCC
CACAGCTCCTGGTGTTTTCATCTTGTTCTTACTGTTGTCTGGATTAGGAGGGCGGAGAGGGTGG
ACTCCCTGAGACAAGATAAGCAGGTGGAGACATAGAAGAGGGAGGGACATTTAACATAGTAACA
TTTTCAGAGGTGACAGAGATGATACACGGGCAGCTGGACTTCTGTGAAGGACAGAGGAGCTGGC
AGACCCACAGGGCCATACCTCTGAGGGACAGGTGAATGGCTGGTTACCAGAGACAGGACTGGTA
GACAGTCAAGTACCTCACTACGATGTGCCAAGAGATCTGGGATCCTGGGAAATGTGTGGAGAAG
AGGATTTGACACTCCCCACCCCCAAGGCCCTTCCCCTCTGCTGACAGCATTGCTGTGGTCGTGG
CCTGTTGCCTTGTCCTCTGTCCCTGGGTGGGGCACACCCTCCTGTGCTGTGCTTGCCTTGTGCA
TCAATAAACCACAATGGCCCAAGGAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039093159 ⟹ XP_038949087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	51,944,607 - 51,954,921 (+)	NCBI
mRatBN7.2	15	45,534,915 - 45,545,223 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001017376	(Get FASTA)	NCBI Sequence Viewer
	XP_038949087	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92627	(Get FASTA)	NCBI Sequence Viewer
	EDM02218	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014441
	ENSRNOP00000014441.2
	ENSRNOP00000107566
GenBank Protein	Q568Z9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001017376 ⟸ NM_001017376

- UniProtKB:

Q568Z9 (UniProtKB/Swiss-Prot), A6HTK5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MELLSTPHSIEINNITCDSFRISWAMEDSDLERVTHYFIDLNKKENKNSNKFKHRDVPTKLVAK
AVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVSGWSETVEFCTGDYAKEHLAQLQEKAE
QIAGRMLRFSVFYRNHHKEYFQHARTHCGNVLQPYLKDNSGSHGSPTSGMLHGVFFSCNTEFNT
GQPPQDSPYGRWRFQIPAQRLFNPSTNLYFADFYCMYTAYHYAILVLAPKGSLGDRFCRDRLPL
LDIACNKFLTCSVEDGELIFRHAQDLILEIIYTEPVDLSLGTLGEISGHQLMSLSTADAKKDPS
CKTCNISVGR

hide sequence

RefSeq Acc Id:	XP_038949087 ⟸ XM_039093159
- Peptide Label:	isoform X1
- UniProtKB:	Q568Z9 (UniProtKB/Swiss-Prot), A6HTK5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000065015 ⟸ ENSRNOT00000074912

Ensembl Acc Id:

ENSRNOP00000014441 ⟸ ENSRNOT00000014441

Ensembl Acc Id:

ENSRNOP00000107566 ⟸ ENSRNOT00000147354

Protein Domains

Fibronectin type-III

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q568Z9-F1-model_v2	AlphaFold	Q568Z9	1-330	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305790	AgrOrtholog
BioCyc Gene	G2FUF-13215	BioCyc
Ensembl Genes	ENSRNOG00000010555	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00000049071	Ensembl
Ensembl Transcript	ENSRNOT00000014441	ENTREZGENE
	ENSRNOT00000014441.5	UniProtKB/Swiss-Prot
	ENSRNOT00000147354	ENTREZGENE
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7314255	IMAGE-MGC_LOAD
InterPro	FN3_dom	UniProtKB/Swiss-Prot
	FN3_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	PHYHIP/PHYHIPL	UniProtKB/Swiss-Prot
	PHYIP/PHIPL_C	UniProtKB/Swiss-Prot
KEGG Report	rno:290356	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109318	IMAGE-MGC_LOAD
NCBI Gene	290356	ENTREZGENE
PANTHER	PHYTANOYL-COA HYDROXYLASE-INTERACTING PROTEIN	UniProtKB/Swiss-Prot
	PTHR15698	UniProtKB/Swiss-Prot
Pfam	PHYHIP_C	UniProtKB/Swiss-Prot
PhenoGen	Phyhip	PhenoGen
PROSITE	FN3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000010555	RatGTEx
	ENSRNOG00000049071	RatGTEx
Superfamily-SCOP	SSF49265	UniProtKB/Swiss-Prot
UniProt	A0ABK0LAG8_RAT	UniProtKB/TrEMBL
	A6HTK5	ENTREZGENE, UniProtKB/TrEMBL
	PHYIP_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Phyhip	phytanoyl-CoA 2-hydroxylase interacting protein	LOC108348161	phytanoyl-CoA hydroxylase-interacting protein	Data merged from RGD:11464721	737654	PROVISIONAL
2016-08-02	LOC108348161	phytanoyl-CoA hydroxylase-interacting protein			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-11-06	Phyhip	phytanoyl-CoA 2-hydroxylase interacting protein	Phyhip	phytanoyl-CoA hydroxylase interacting protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Phyhip	phytanoyl-CoA hydroxylase interacting protein	Phyhip_predicted	phytanoyl-CoA hydroxylase interacting protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Phyhip_predicted	phytanoyl-CoA hydroxylase interacting protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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