Advanced Search (OLGA)

Gene: Gcc2 (GRIP and coiled-coil domain containing 2) Rattus norvegicus

Analyze

Symbol:

Gcc2

Name:

GRIP and coiled-coil domain containing 2

RGD ID:

1305732

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including microtubule cytoskeleton organization; protein targeting to lysosome; and retrograde transport, endosome to Golgi. Predicted to be located in trans-Golgi network. Predicted to be active in Golgi apparatus. Orthologous to human GCC2 (GRIP and coiled-coil domain containing 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

185 kDa Golgi coiled-coil protein; GRIP and coiled-coil domain-containing protein 2; LIM and senescent cell antigen-like domains 1; LOC309798

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GCC2 (GRIP and coiled-coil domain containing 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Gcc2 (GRIP and coiled-coil domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gcc2 (GRIP and coiled-coil domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GCC2 (GRIP and coiled-coil domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GCC2 (GRIP and coiled-coil domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gcc2 (GRIP and coiled-coil domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GCC2 (GRIP and coiled-coil domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GCC2 (GRIP and coiled-coil domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gcc2 (GRIP and coiled-coil domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Gcc2 (GRIP and coiled-coil domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GCC2 (GRIP and coiled-coil domain containing 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GCC2 (GRIP and coiled-coil domain containing 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gcc2 (GRIP and coiled-coil domain containing 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	gcc-2	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector)
Caenorhabditis elegans (roundworm):	gcc-2	Alliance	DIOPT (OrthoFinder\|OrthoInspector)
Drosophila melanogaster (fruit fly):	GCC185	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	GCC185	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	gcc2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gcc2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	26,788,472 - 26,836,728 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	26,790,516 - 26,836,726 (+)	Ensembl				GRCr8
mRatBN7.2	20	26,247,394 - 26,293,613 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	26,247,404 - 26,293,613 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	27,249,780 - 27,296,009 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	26,636,136 - 26,682,363 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	27,384,236 - 27,430,382 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	27,832,960 - 27,879,764 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	27,832,932 - 27,879,759 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	29,653,397 - 29,699,347 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	37,472,178 - 37,518,324 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	27,699,422 - 27,745,448 (+)	NCBI		Celera
RGSC_v3.1	20	37,487,402 - 37,531,803 (-)	NCBI
Cytogenetic Map	20	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

sensorineural hearing loss (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

clorgyline (ISO)

clozapine (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

DDT (EXP)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dimethylselenide (ISO)

dorsomorphin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydroxyl (ISO)

methyl methanesulfonate (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

Propiverine (EXP)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thioacetamide (EXP)

topotecan (EXP)

tributylstannane (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triticonazole (EXP)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Golgi ribbon formation (ISO,ISS)

Golgi to plasma membrane protein transport (ISO)

late endosome to Golgi transport (IBA,ISO,ISS)

microtubule anchoring (ISO,ISS)

microtubule organizing center organization (ISO,ISS)

protein localization to Golgi apparatus (ISO,ISS)

protein targeting to lysosome (ISO,ISS)

protein transport (IEA)

recycling endosome to Golgi transport (IBA,ISO,ISS)

regulation of protein exit from endoplasmic reticulum (ISO,ISS)

retrograde transport, endosome to Golgi (ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

Golgi apparatus (IEA,ISO)

nucleoplasm (ISO)

trans-Golgi network (IBA,ISO,ISS)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16885419	PMID:17488291	PMID:17543864	PMID:18243103	PMID:19946888

Genomics

Comparative Map Data

Gcc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	26,788,472 - 26,836,728 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	26,790,516 - 26,836,726 (+)	Ensembl				GRCr8
mRatBN7.2	20	26,247,394 - 26,293,613 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	26,247,404 - 26,293,613 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	27,249,780 - 27,296,009 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	26,636,136 - 26,682,363 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	27,384,236 - 27,430,382 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	27,832,960 - 27,879,764 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	27,832,932 - 27,879,759 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	29,653,397 - 29,699,347 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	37,472,178 - 37,518,324 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	27,699,422 - 27,745,448 (+)	NCBI		Celera
RGSC_v3.1	20	37,487,402 - 37,531,803 (-)	NCBI
Cytogenetic Map	20	q11	NCBI

GCC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	108,449,206 - 108,509,415 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	108,449,107 - 108,509,415 (+)	Ensembl			hg38	GRCh38
GRCh37	2	109,065,662 - 109,125,871 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	108,432,068 - 108,492,286 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	2	103,373,681 - 103,433,949 (+)	NCBI		Celera
Cytogenetic Map	2	q12.3	NCBI
HuRef	2	102,664,749 - 102,724,917 (+)	NCBI		HuRef
CHM1_1	2	109,069,859 - 109,130,068 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	108,909,826 - 108,970,093 (+)	NCBI		T2T-CHM13v2.0

Gcc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	58,091,240 - 58,141,421 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	58,091,319 - 58,141,421 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	58,255,408 - 58,305,599 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	58,255,497 - 58,305,599 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	57,718,274 - 57,768,340 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	57,650,883 - 57,700,949 (+)	NCBI		MGSCv36	mm8
Celera	10	58,993,423 - 59,043,634 (+)	NCBI		Celera
Cytogenetic Map	10	B4	NCBI
cM Map	10	29.3	NCBI

Gcc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	12,011,708 - 12,055,907 (+)	Ensembl
ChiLan1.0	NW_004955470	12,011,606 - 12,053,625 (+)	NCBI	ChiLan1.0	ChiLan1.0

GCC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	20,582,674 - 20,644,868 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	20,585,441 - 20,647,635 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	94,659,117 - 94,721,491 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	109,682,051 - 109,735,166 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	109,682,552 - 109,734,682 (+)	Ensembl			panPan2	panpan1.1

GCC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	35,379,055 - 35,431,500 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	35,379,030 - 35,431,457 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	35,300,063 - 35,353,804 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	36,230,723 - 36,284,497 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	36,230,737 - 36,284,102 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	35,959,192 - 36,012,964 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	36,246,341 - 36,300,364 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	36,434,983 - 36,489,300 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gcc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	92,336,321 - 92,384,642 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936829	13,229 - 62,510 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936829	13,235 - 61,556 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GCC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	47,718,254 - 47,758,999 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	47,718,251 - 47,759,060 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	49,887,515 - 49,928,295 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GCC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	11,962,757 - 12,026,045 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	11,963,689 - 12,027,503 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666080	7,721,301 - 7,787,257 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gcc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	11,670,475 - 11,710,053 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	11,670,493 - 11,709,830 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Gcc2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	24,390,342 - 24,441,103 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Gcc2
398 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	633
Count of miRNA genes:	295
Interacting mature miRNAs:	368
Transcripts:	ENSRNOT00000001092
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat

Markers in Region

D20Got113

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	26,278,849 - 26,278,979 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	27,864,377 - 27,864,506	NCBI	Rnor6.0
Rnor_5.0	20	29,684,847 - 29,684,976	UniSTS	Rnor5.0
RGSC_v3.4	20	37,486,811 - 37,486,940	UniSTS	RGSC3.4
Celera	20	27,730,689 - 27,730,818	UniSTS
Cytogenetic Map	20	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001092 ⟹ ENSRNOP00000001092

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	26,790,516 - 26,836,726 (+)	Ensembl
mRatBN7.2 Ensembl	20	26,247,404 - 26,293,613 (+)	Ensembl
Rnor_6.0 Ensembl	20	27,832,932 - 27,879,759 (+)	Ensembl

RefSeq Acc Id:

NM_001107633 ⟹ NP_001101103

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,790,582 - 26,836,728 (+)	NCBI
mRatBN7.2	20	26,247,466 - 26,293,613 (+)	NCBI
Rnor_6.0	20	27,832,993 - 27,879,764 (+)	NCBI
Rnor_5.0	20	29,653,397 - 29,699,347 (+)	NCBI
RGSC_v3.4	20	37,472,178 - 37,518,324 (-)	RGD
Celera	20	27,699,422 - 27,745,448 (+)	RGD

Sequence:

show sequence

CTCAGAGGCGGAGTACCTAGGACGCCTGAAAAGGCCGAGGTGGCCGCGGGTCGCTGCCACGATG
GAGGATTCTGCTCAAGATGCTGTGACTGCAGCACCCTCCGGGACCCCGAAATCCAAGCTAGAAA
CATTGCCCAGAGAAGATCTCATCAAGTTTGCCAAGAAGCAGATGATGCTCCTACAGAAAGCCAA
AGCAAGGTGTACAGAATTAGACAAAGAAGTTGAAGAGCTCAAATCAAAACCTGTTGACGGAGGA
ACTGATGATATGATTAAGGTGCTAACTGAACGCTTGGATGCTCTTCTTCTGGAAAAAGCAGAGA
CTGAACAACAGTGTCTGTGTCTCAAAAAAGAAAATATTAAAATGAAGCAAGAGGTTGAGGATTC
TGTAACTAAACTGGAAGAGACACAAAAAGAGTTTGAACAATCACATAGAAACTACGTAAGAGAA
ATGGAAAGTGTTAAAAATGAACTGATAGCAGTACACTCAGAGCACAGCAAAGAAAAGGCTGCCT
TACAAAGAGACCTGGAGGGAGCAGTCCATAGGCAAGCAGAGCTGTTAGAACAGCTCAAGTCTCA
GAGCGACTCTGAAGATAATGTTAAAAAACTACAGGAAGAGATTCAGAACATTACAGCAGCATTT
GAGGAACAAACGTCATGTCTACAAAAGCAATTAGAAGCTACCAGTGATGAAAAACAGCAAGAGA
TTATTCATCTCCAGAAAGTCATTGAGGACAACGCTCAGCACTACCAAAAAGATATTAATACTTT
CCAAGAAGAGATTGTGCAGCTGAGAGCTACACACAAAGAAGAAGTTAATGAGCTGATGTCTCAA
ATGGAAACATTAGCTAAAGAACATGAGGCAGCAGTAAATAAGCTAAAAGAGAACAGAGTGACAC
TGTGTGAGACAAGTGAGACCATTCCAGAGAATTACCAATGTGAATCAGAAAGCTTAAATGAAGA
CACCTCAGATGCAAGCCAGGAGAATCAAAAATGCTCTGTGGCCTTACAGGAAGATCCTTTTGCA
GAACATACAGTGTATGATAAAGTCAGACAATTGGAAGATTCATTAAAAGAACTGGAATCTCAAC
ATAGTATCTTAAAAGATGAAGTGACTTATATGAATAATCTCAAGTTAAAACTTGAAATGGATGC
CCAGCATATAAAGGATGAGTTTTTCCATGAAAGAGAAGACTTGGAGTTTAAAATTAATGAACTG
TTGCTGGCCAAAGAAGAACAGAGCTACGTAGTAGAAAAATTAAAATATGAGCGAGAAGATTTAA
ATAGGCAGCTTTGCTGTACTGTGGAACAACATAACAAAGAAATACAGCGTCTTCAGGAGCACCA
TCAGAAAGAAATCTCTGAACTAAGTGAGACATTTATGTCAGGTTCAGAAAAAGAAAAGTTAGCA
TTAATGTTTGAAATACAGGGACTTAAGGAACAGTGTGAAAATCTACAACATGAAAAGCAAGAGG
TAGTTCTAAATTATGAGAGTTTACGAGAGATGATGGAAATTTTACAAACGGAACTTGGAGAATC
TGCTGGAAAAATAAGTCAAGAGTTTGAAACAATGAAGCAACAGCAAGCATCTGATGTTCATGAG
CTTCAGCAGAAGCTAAGAACTGCTTTTAACGAAAAAGACGCTCTTCTTGAAACTATAAATCGCC
TACAAGGAGAAAATGAAAAATTATTATCACAAGAATTGGTATCAGAACTCGAAAGTACCATGAA
GAACCTTAAGGCAGATAATAGCATGTACTTAGCCAGCCTTGGTCAAAAAGATACCCTGTTACAA
GAATTAGAAGCAAAGATAAGTTCTCTTGCTGAAGAAAAAGATGATTTTATAAGTAAAATCAAAA
CTTCCCGTGAAGAGATAGATGATCTCCATCAGAAATGGGAAAGGGAACAGAAACTGTCTGTAGA
ACTCAGGGAAGCAGCAGAGCAAGCCGCCCAGCACAACAGTGAACTGAGACAAAGAGTAAGTGAA
TTAACAGGAAAACTAGATGAAATATTAAGAGAAAAGAGTCAAAATGACCAAAACATTATGGTTC
AAATGAAAACCATGACAGAAGACCAAGAAGCATTGTCATCTAAAATCAAGTCTCTTTATGAGGA
AAACAATAGACTGCATTCTGAAAAGGTCCAGTTGAGTAGAGATTTAGAAGCTCTTCAGTCTCAA
CAAGATTTTGCCTATAAAGAGCATGTTGCTGAATTCGAAAAGAAACTCCAGTTAATGGTTGAAG
AACGAGATGATTTAAATAAACTGCTTGAAAATGAGCAACTTCAGAAGTCATTTGTCAAAACTCA
GTTGTACGAGTTTCTTAAGCAAATGAGGCCAAGCATTTTAGAAGATAATGAAGAGGAAGATGTT
GTCACAGTTCTAAAAGCTGTGGGTGAATCCTTAGTGACAGTAAAGGAAGAAAAGCATAACTTAG
TCTTTGAATATGATGCGAGAGTATTAGAATTAGAAAGGAGGATTAAGTGCCTTCAAGAGGAGAG
TGTAGTTCAGTGTGAAGAACTAAGGGCTTTAGTAAGAGACTCTGAACAAGAGAAAATTCTCCTA
AGAAAAGAATTAGATGAAGTCACATCAACAAAAGAGGCCCTGCAGTGTGATATTCTAGAAATGA
AGAATACTAATGAAAAAACAAGCCTTGAAAATCAGACTCTTTCAACTCGGGTTGAAGAATTATC
GCGGTCATTACACAGCAAAAATGAAGTCCATAATGAAAAGGATCTTGTCATAGAACATGAAAAC
CTGAGGCTATCGCTTGAGCAGAGGGAGTCTGAGCTACAAGATGTGAGAGCAGAATTGATGCTGC
TGAAGGATTCCTTAGAGAAATCGCCTTCTGTAAAAAATGATCAACTTTCATTGGTAAAAGAGCT
GGAAGAAAAAATAGAAAGTCTGGAAAAAGAATCCAAAGACAAGGATGAGAAAATCAGTAAGATA
AAACTAGTCGCTGTGAGAGCAAAGAAAGAACTAGATTCTAACAGGAAAGAGGCCCAGACACTAC
GGGACGAACTCGAGTCCGTACAGTCAGAAAAGGACCGCTTATCTGCTTCTATGAAGGAGTTTAT
CCAAGGAGCAGAAAGCTATAAGAATCTTCTGTTAGAATATGACAAGCAGTCAGAACAGCTGGAT
GTGGAAAAAGAACGTGCTAATAATTTTGAACATCACATAGAAGACCTTACCAAACAATTAAGAG
ATTCGACTTGCCAGTATGAAAAACTAACTTCCGACAATGAGGATCTCCTGGCTCGAATTGAGAC
CCTGCAGGCTAATGCCAGGTTATTAGAAGCACAGATCTTAGAGGTCCAGAGAGCCAAAGGAGTA
GTAGAAAAAGAACTGGAAGCTGAAAAACTTCAGAAAGAGCAGAAAATTAAGGAACATGTCAGTA
CTACAAATGAGCTTGAAGAACTTCAACTCCAATTTCAAAAGGAAAAGAAGCAGCTTCAGAAAAC
GATGCAAGAATTAGAACTGGTTAAAAAGGATGCCCAACAGACCACGTTGATGAATATGGAAATA
GCAGATTACGAACGTTTGATGAAAGAATTAAATCAAAAGTTAACAAATAAAAACAGTAAGATAG
AAGATTTGGAGCAAGAAATGAAAATTCAGAAACAGAAACAAGAAACCCTACAAGAAGAAATGAC
TTCCCTGCAGTCTTCAGTACAGCACTACGAAGAAAAGAACGCCCAAATCAAGCAGCTGCTTGTG
AAAACCAAAAAGGAACTGGCAGATGCAAAGCAAGCAGAAACTGATCACTTACTACTCCAGGCGT
CTTTAAAGGGCGAGCTGGAAGCAAGCCAGCAGCAAGTAGAAGTCTATAAAATTCAGCTAGCTGA
GATGACATCTGAGAAACACAAAATCCATGAGCACCTGAAGACTTCTGCGGAACAGCACCAGCGC
ACACTAAGTGCATACCAGCAGAGGGTGGTGGCCCTGCAGGAAGAGAGCCGCACTGCCAAGGCAG
AGCAAGCTGCTGTCACCTCTGAATTTGAGAACTACAAAGTCCGGGTTCATAACGTTCTAAAACA
ACAGAAAAATAAATCTGTGTCTCAGGCTGAAACTGAGGGAGCTAAACAAGAAAGGGAACACCTG
GAAATGCTGATTGACCAACTGAAAATCAAGTTACAGGACAGCCAAAACAGCTTACAAATCAGTG
TGTCAGAGTTCCAGACACTGCAGTCTGAGCATGACACTCTGCTAGAGAGGCACAACCGGATGCT
GCAGGAAACTGTGACCAAAGAGGCGGAACTTCGGGAAAAGTTATGTTCAGCTCAATCTGAGAAC
ACCATGTTGAAGTCTGAACACGCCCAGACAATGTGTCAGCTGACATCCCAGAATGAGGCCCTCC
GTAACAGCTTCCGAGACCAAGTTCGACACTTGCAGGATGAGCACAGAAAGACAGTGGAGACCTT
GCAGCACCAGCTCTCCAAGGTGGAAACTCAGCTCTTCCAGCTCAAGAGTGAGCCACCCACAAAA
AGCCCTGCTTCTTCCCATCAACCTTCAAAAAGCCTCCGAGAAAGACGGACCACAGACCTCCCCC
TTCTGGACATGCACACTGTGACCCGAGAGGAGGGGGAAGGGATGGAGACAACTGACAGTGAGTC
TGTGTCTTCGGCCGGCACACACATTCAGTCCTTGGAGCAGCTCCTTAGCTCTCCTGACAGCAAG
CTTGAACGTCTTACAGAGGCCTCCTTATGGCATACAGAATTTACCAAAGAAGAATTGGCTGAGA
AGCTCAGTTCCACCACGAAGAGTGCAGATCACTTAAATGGCCTGCTTCGGGAGACAGAGGCTAC
CAACGCCATCCTTATGGAGCAAATTAAGCTTCTCAAAAGTGAAATAAGAAGACTGGAAAGAAAC
CAAGAGCGGGAGAAGTCTGTGGCTAACCTGGAGTACTTGAAGAATGTCCTACTGCGGTTCATTT
TCCTGAAGCCGGGTAGTGAAAGAGAGAGGCTTCTTCCTGTGATAGACACGATGCTGCAGCTCAG
CCCTGAAGAAAAGGGAAAGCTTGCCACAGTTGCTCAAGGTGAGGAAGAAAGTGCCTCTCGTTCC
TCTGGATGGGCATCCTACCTTCATAGCTGGTCTGGACTGCGATAGGTTGACAGAAAGAAGATTC
TTTAGTGATGCAACAGAACTCCTTTGGAAAAGCTGGGTATCATTTGATCATGAAGTGTGCATCT
CTGTTCACATCCCCTGATGATTGTACATATGTATAGCCCATGTATATAGAATCTCATCTTGTAG
TAAAAGGACATCAGCTTGAAGTAGTGGTACCAATTGTTCATGGTCCTCTAACTCAGCATGTGGC
CTCATGGTCTCTGTGATCTCCACCCACAGAGGAAACGGTTCATTCCTGCACTCTGGAACCCCAG
GAGACACTCATTTCTAAGTAGTATTGTGAATTTTGATATTGAACTAAATTTTGGTACCAAACCA
ACTGGGGAATTTAATCTTTTAAAATAATGTTTCAAGATTGAGGAAATGCTTTATTGATAAGGTT
GACATGTTTATTAAAAGATTATGAAGTAAATATGCTATGGTTTAATTATGAGGCTAACTTAAAT
TGCAATTCAGTCAGTTACTTTAAAATAAACCTCCCTCCCATTTGTAATTTTCAAAATTGGCCCT
AGTCCTGGTAATGTGACACTGACAGAATAGGTGGGCTCCACCTCAGCTGATGTGTTCTGTGGTG
TCTCCAGGCTTGTTTGCTGCCACTCATAAGCCATGAGTCTCTTTTGAGAATTCCCTACATCTCA
AAACAGTGACTGTCTTACTCAGCATTAAATCTACATGTGAACCTGGTGCTTCCAGTATTGTTCA
AGTATTCTTATTTCCTAAGCAGGACCCCAGAGGGCTCAGACCCTCTATTGGTGAACAAGCCTAG
CTGGGGGAGTGTCTCTGTCCTTATGTCTCTGGAAATACTATATTGACTAGATTAAAATTGTGCT
CTTAAATCAGATTTGGGGGTTATATTTTAATATGTAATTTGTTAATGAATAGTGCTGTCTGGAG
TCTTAAGCTTACGTTTATTCTCCAGTTGTCAGTCTCAGCTTGAAACTGTCCTTTAGTCACTATG
AATATTGGTTTCCAACCTGGTTTGACTGAAATTTACTGCTGACATGTTGAGTTTGTTCTCTTAA
AGCTGTTTGACTCTCAGTGTTCGCTCTACCTGTGTTAGAACAGACCTAGCAAGTGAGTGTGCTG
ATTCAAACACATCTCTCTCAGCTGACTCTTTAAGGTAAGGTTTTCTACCTTTATAAACTGTGAA
TGTGAGTATGCCCAGCGGAATCCCATGTAATTTCAGTACTATTTAAATAAACTCCATGTTTTCT
TTGGGCCTAATATGCCTTTTGAAGTCTGTATAAACTTGTTTTCAAATCTAATCTGTTCATATGA
ATATAATAAAAATACCTTTTGCATGGTAAAAATTACTTTGATTACAAAAGATATATATATGCTT
TTTGTGACCAGCAATAAGAAACTGTAATGACTGATATTTCTATTAAATGCACTTAACTATAT

hide sequence

RefSeq Acc Id:

XM_006256375 ⟹ XP_006256437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,788,472 - 26,836,727 (+)	NCBI
mRatBN7.2	20	26,247,394 - 26,293,612 (+)	NCBI
Rnor_6.0	20	27,832,960 - 27,879,763 (+)	NCBI
Rnor_5.0	20	29,653,397 - 29,699,347 (+)	NCBI

Sequence:

show sequence

TCGTTGCAAGACCTTTGACCCGCGCTCCGCCGCCTCAGAGGCGGAGTACCTAGGACGCCTGAAA
AGGCCGAGGTGGCCGCGGGTCGCTGCCACGATGGAGGTAACGGATTCTGCTCAAGATGCTGTGA
CTGCAGCACCCTCCGGGACCCCGAAATCCAAGCTAGAAACATTGCCCAGAGAAGATCTCATCAA
GTTTGCCAAGAAGCAGATGATGCTCCTACAGAAAGCCAAAGCAAGGTGTACAGAATTAGACAAA
GAAGTTGAAGAGCTCAAATCAAAACCTGTTGACGGAGGAACTGATGATATGATTAAGGTGCTAA
CTGAACGCTTGGATGCTCTTCTTCTGGAAAAAGCAGAGACTGAACAACAGTGTCTGTGTCTCAA
AAAAGAAAATATTAAAATGAAGCAAGAGGTTGAGGATTCTGTAACTAAACTGGAAGAGACACAA
AAAGAGTTTGAACAATCACATAGAAACTACGTAAGAGAAATGGAAAGTGTTAAAAATGAACTGA
TAGCAGTACACTCAGAGCACAGCAAAGAAAAGGCTGCCTTACAAAGAGACCTGGAGGGAGCAGT
CCATAGGCAAGCAGAGCTGTTAGAACAGCTCAAGTCTCAGAGCGACTCTGAAGATAATGTTAAA
AAACTACAGGAAGAGATTCAGAACATTACAGCAGCATTTGAGGAACAAACGTCATGTCTACAAA
AGCAATTAGAAGCTACCAGTGATGAAAAACAGCAAGAGATTATTCATCTCCAGAAAGTCATTGA
GGACAACGCTCAGCACTACCAAAAAGATATTAATACTTTCCAAGAAGAGATTGTGCAGCTGAGA
GCTACACACAAAGAAGAAGTTAATGAGCTGATGTCTCAAATGGAAACATTAGCTAAAGAACATG
AGGCAGCAGTAAATAAGCTAAAAGAGAACAGAGTGACACTGTGTGAGACAAGTGAGACCATTCC
AGAGAATTACCAATGTGAATCAGAAAGCTTAAATGAAGACACCTCAGATGCAAGCCAGGAGAAT
CAAAAATGCTCTGTGGCCTTACAGGAAGATCCTTTTGCAGAACATACAGTGTATGATAAAGTCA
GACAATTGGAAGATTCATTAAAAGAACTGGAATCTCAACATAGTATCTTAAAAGATGAAGTGAC
TTATATGAATAATCTCAAGTTAAAACTTGAAATGGATGCCCAGCATATAAAGGATGAGTTTTTC
CATGAAAGAGAAGACTTGGAGTTTAAAATTAATGAACTGTTGCTGGCCAAAGAAGAACAGAGCT
ACGTAGTAGAAAAATTAAAATATGAGCGAGAAGATTTAAATAGGCAGCTTTGCTGTACTGTGGA
ACAACATAACAAAGAAATACAGCGTCTTCAGGAGCACCATCAGAAAGAAATCTCTGAACTAAGT
GAGACATTTATGTCAGGTTCAGAAAAAGAAAAGTTAGCATTAATGTTTGAAATACAGGGACTTA
AGGAACAGTGTGAAAATCTACAACATGAAAAGCAAGAGGTAGTTCTAAATTATGAGAGTTTACG
AGAGATGATGGAAATTTTACAAACGGAACTTGGAGAATCTGCTGGAAAAATAAGTCAAGAGTTT
GAAACAATGAAGCAACAGCAAGCATCTGATGTTCATGAGCTTCAGCAGAAGCTAAGAACTGCTT
TTAACGAAAAAGACGCTCTTCTTGAAACTATAAATCGCCTACAAGGAGAAAATGAAAAATTATT
ATCACAAGAATTGGTATCAGAACTCGAAAGTACCATGAAGAACCTTAAGGCAGATAATAGCATG
TACTTAGCCAGCCTTGGTCAAAAAGATACCCTGTTACAAGAATTAGAAGCAAAGATAAGTTCTC
TTGCTGAAGAAAAAGATGATTTTATAAGTAAAATCAAAACTTCCCGTGAAGAGATAGATGATCT
CCATCAGAAATGGGAAAGGGAACAGAAACTGTCTGTAGAACTCAGGGAAGCAGCAGAGCAAGCC
GCCCAGCACAACAGTGAACTGAGACAAAGAGTAAGTGAATTAACAGGAAAACTAGATGAAATAT
TAAGAGAAAAGAGTCAAAATGACCAAAACATTATGGTTCAAATGAAAACCATGACAGAAGACCA
AGAAGCATTGTCATCTAAAATCAAGTCTCTTTATGAGGAAAACAATAGACTGCATTCTGAAAAG
GTCCAGTTGAGTAGAGATTTAGAAGCTCTTCAGTCTCAACAAGATTTTGCCTATAAAGAGCATG
TTGCTGAATTCGAAAAGAAACTCCAGTTAATGGTTGAAGAACGAGATGATTTAAATAAACTGCT
TGAAAATGAGCAACTTCAGAAGTCATTTGTCAAAACTCAGTTGTACGAGTTTCTTAAGCAAATG
AGGCCAAGCATTTTAGAAGATAATGAAGAGGAAGATGTTGTCACAGTTCTAAAAGCTGTGGGTG
AATCCTTAGTGACAGTAAAGGAAGAAAAGCATAACTTAGTCTTTGAATATGATGCGAGAGTATT
AGAATTAGAAAGGAGGATTAAGTGCCTTCAAGAGGAGAGTGTAGTTCAGTGTGAAGAACTAAGG
GCTTTAGTAAGAGACTCTGAACAAGAGAAAATTCTCCTAAGAAAAGAATTAGATGAAGTCACAT
CAACAAAAGAGGCCCTGCAGTGTGATATTCTAGAAATGAAGAATACTAATGAAAAAACAAGCCT
TGAAAATCAGACTCTTTCAACTCGGGTTGAAGAATTATCGCGGTCATTACACAGCAAAAATGAA
GTCCATAATGAAAAGGATCTTGTCATAGAACATGAAAACCTGAGGCTATCGCTTGAGCAGAGGG
AGTCTGAGCTACAAGATGTGAGAGCAGAATTGATGCTGCTGAAGGATTCCTTAGAGAAATCGCC
TTCTGTAAAAAATGATCAACTTTCATTGGTAAAAGAGCTGGAAGAAAAAATAGAAAGTCTGGAA
AAAGAATCCAAAGACAAGGATGAGAAAATCAGTAAGATAAAACTAGTCGCTGTGAGAGCAAAGA
AAGAACTAGATTCTAACAGGAAAGAGGCCCAGACACTACGGGACGAACTCGAGTCCGTACAGTC
AGAAAAGGACCGCTTATCTGCTTCTATGAAGGAGTTTATCCAAGGAGCAGAAAGCTATAAGAAT
CTTCTGTTAGAATATGACAAGCAGTCAGAACAGCTGGATGTGGAAAAAGAACGTGCTAATAATT
TTGAACATCACATAGAAGACCTTACCAAACAATTAAGAGATTCGACTTGCCAGTATGAAAAACT
AACTTCCGACAATGAGGATCTCCTGGCTCGAATTGAGACCCTGCAGGCTAATGCCAGGTTATTA
GAAGCACAGATCTTAGAGGTCCAGAGAGCCAAAGGAGTAGTAGAAAAAGAACTGGAAGCTGAAA
AACTTCAGAAAGAGCAGAAAATTAAGGAACATGTCAGTACTACAAATGAGCTTGAAGAACTTCA
ACTCCAATTTCAAAAGGAAAAGAAGCAGCTTCAGAAAACGATGCAAGAATTAGAACTGGTTAAA
AAGGATGCCCAACAGACCACGTTGATGAATATGGAAATAGCAGATTACGAACGTTTGATGAAAG
AATTAAATCAAAAGTTAACAAATAAAAACAGTAAGATAGAAGATTTGGAGCAAGAAATGAAAAT
TCAGAAACAGAAACAAGAAACCCTACAAGAAGAAATGACTTCCCTGCAGTCTTCAGTACAGCAC
TACGAAGAAAAGAACGCCCAAATCAAGCAGCTGCTTGTGAAAACCAAAAAGGAACTGGCAGATG
CAAAGCAAGCAGAAACTGATCACTTACTACTCCAGGCGTCTTTAAAGGGCGAGCTGGAAGCAAG
CCAGCAGCAAGTAGAAGTCTATAAAATTCAGCTAGCTGAGATGACATCTGAGAAACACAAAATC
CATGAGCACCTGAAGACTTCTGCGGAACAGCACCAGCGCACACTAAGTGCATACCAGCAGAGGG
TGGTGGCCCTGCAGGAAGAGAGCCGCACTGCCAAGGCAGAGCAAGCTGCTGTCACCTCTGAATT
TGAGAACTACAAAGTCCGGGTTCATAACGTTCTAAAACAACAGAAAAATAAATCTGTGTCTCAG
GCTGAAACTGAGGGAGCTAAACAAGAAAGGGAACACCTGGAAATGCTGATTGACCAACTGAAAA
TCAAGTTACAGGACAGCCAAAACAGCTTACAAATCAGTGTGTCAGAGTTCCAGACACTGCAGTC
TGAGCATGACACTCTGCTAGAGAGGCACAACCGGATGCTGCAGGAAACTGTGACCAAAGAGGCG
GAACTTCGGGAAAAGTTATGTTCAGCTCAATCTGAGAACACCATGTTGAAGTCTGAACACGCCC
AGACAATGTGTCAGCTGACATCCCAGAATGAGGCCCTCCGTAACAGCTTCCGAGACCAAGTTCG
ACACTTGCAGGATGAGCACAGAAAGACAGTGGAGACCTTGCAGCACCAGCTCTCCAAGGTGGAA
ACTCAGCTCTTCCAGCTCAAGAGTGAGCCACCCACAAAAAGCCCTGCTTCTTCCCATCAACCTT
CAAAAAGCCTCCGAGAAAGACGGACCACAGACCTCCCCCTTCTGGACATGCACACTGTGACCCG
AGAGGAGGGGGAAGGGATGGAGACAACTGACAGTGAGTCTGTGTCTTCGGCCGGCACACACATT
CAGTCCTTGGAGCAGCTCCTTAGCTCTCCTGACAGCAAGCTTGAACGTCTTACAGAGGCCTCCT
TATGGCATACAGAATTTACCAAAGAAGAATTGGCTGAGAAGCTCAGTTCCACCACGAAGAGTGC
AGATCACTTAAATGGCCTGCTTCGGGAGACAGAGGCTACCAACGCCATCCTTATGGAGCAAATT
AAGCTTCTCAAAAGTGAAATAAGAAGACTGGAAAGAAACCAAGAGCGGGAGAAGTCTGTGGCTA
ACCTGGAGTACTTGAAGAATGTCCTACTGCGGTTCATTTTCCTGAAGCCGGGTAGTGAAAGAGA
GAGGCTTCTTCCTGTGATAGACACGATGCTGCAGCTCAGCCCTGAAGAAAAGGGAAAGCTTGCC
ACAGTTGCTCAAGGTGAGGAAGAAAGTGCCTCTCGTTCCTCTGGATGGGCATCCTACCTTCATA
GCTGGTCTGGACTGCGATAGGTTGACAGAAAGAAGATTCTTTAGTGATGCAACAGAACTCCTTT
GGAAAAGCTGGGTATCATTTGATCATGAAGTGTGCATCTCTGTTCACATCCCCTGATGATTGTA
CATATGTATAGCCCATGTATATAGAATCTCATCTTGTAGTAAAAGGACATCAGCTTGAAGTAGT
GGTACCAATTGTTCATGGTCCTCTAACTCAGCATGTGGCCTCATGGTCTCTGTGATCTCCACCC
ACAGAGGAAACGGTTCATTCCTGCACTCTGGAACCCCAGGAGACACTCATTTCTAAGTAGTATT
GTGAATTTTGATATTGAACTAAATTTTGGTACCAAACCAACTGGGGAATTTAATCTTTTAAAAT
AATGTTTCAAGATTGAGGAAATGCTTTATTGATAAGGTTGACATGTTTATTAAAAGATTATGAA
GTAAATATGCTATGGTTTAATTATGAGGCTAACTTAAATTGCAATTCAGTCAGTTACTTTAAAA
TAAACCTCCCTCCCATTTGTAATTTTCAAAATTGGCCCTAGTCCTGGTAATGTGACACTGACAG
AATAGGTGGGCTCCACCTCAGCTGATGTGTTCTGTGGTGTCTCCAGGCTTGTTTGCTGCCACTC
ATAAGCCATGAGTCTCTTTTGAGAATTCCCTACATCTCAAAACAGTGACTGTCTTACTCAGCAT
TAAATCTACATGTGAACCTGGTGCTTCCAGTATTGTTCAAGTATTCTTATTTCCTAAGCAGGAC
CCCAGAGGGCTCAGACCCTCTATTGGTGAACAAGCCTAGCTGGGGGAGTGTCTCTGTCCTTATG
TCTCTGGAAATACTATATTGACTAGATTAAAATTGTGCTCTTAAATCAGATTTGGGGGTTATAT
TTTAATATGTAATTTGTTAATGAATAGTGCTGTCTGGAGTCTTAAGCTTACGTTTATTCTCCAG
TTGTCAGTCTCAGCTTGAAACTGTCCTTTAGTCACTATGAATATTGGTTTCCAACCTGGTTTGA
CTGAAATTTACTGCTGACATGTTGAGTTTGTTCTCTTAAAGCTGTTTGACTCTCAGTGTTCGCT
CTACCTGTGTTAGAACAGACCTAGCAAGTGAGTGTGCTGATTCAAACACATCTCTCTCAGCTGA
CTCTTTAAGGTAAGGTTTTCTACCTTTATAAACTGTGAATGTGAGTATGCCCAGCGGAATCCCA
TGTAATTTCAGTACTATTTAAATAAACTCCATGTTTTCTTTGGGCCTAATATGCCTTTTGAAGT
CTGTATAAACTTGTTTTCAAATCTAATCTGTTCATATGAATATAATAAAAATACCTTTTGCATG
GTAAAAATTACTTTGATTACAAAAGATATATATATGCTTTTTGTGACCAGCAATAAGAAACTGT
AATGACTGATATTTCTATTAAATGCACTTAACTATA

hide sequence

RefSeq Acc Id:

XM_039098762 ⟹ XP_038954690

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,788,472 - 26,820,319 (+)	NCBI
mRatBN7.2	20	26,247,394 - 26,277,206 (+)	NCBI

RefSeq Acc Id:

XR_005497267

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	26,788,472 - 26,806,151 (+)	NCBI
mRatBN7.2	20	26,247,394 - 26,263,035 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101103	(Get FASTA)	NCBI Sequence Viewer
	NP_001421557	(Get FASTA)	NCBI Sequence Viewer
	XP_006256437	(Get FASTA)	NCBI Sequence Viewer
	XP_038954690	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3ZZL9	(Get FASTA)	NCBI Sequence Viewer
	EDL93092	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001092

RefSeq Acc Id:

NP_001101103 ⟸ NM_001107633

- UniProtKB:

D3ZZL9 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MEDSAQDAVTAAPSGTPKSKLETLPREDLIKFAKKQMMLLQKAKARCTELDKEVEELKSKPVDG
GTDDMIKVLTERLDALLLEKAETEQQCLCLKKENIKMKQEVEDSVTKLEETQKEFEQSHRNYVR
EMESVKNELIAVHSEHSKEKAALQRDLEGAVHRQAELLEQLKSQSDSEDNVKKLQEEIQNITAA
FEEQTSCLQKQLEATSDEKQQEIIHLQKVIEDNAQHYQKDINTFQEEIVQLRATHKEEVNELMS
QMETLAKEHEAAVNKLKENRVTLCETSETIPENYQCESESLNEDTSDASQENQKCSVALQEDPF
AEHTVYDKVRQLEDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINE
LLLAKEEQSYVVEKLKYEREDLNRQLCCTVEQHNKEIQRLQEHHQKEISELSETFMSGSEKEKL
ALMFEIQGLKEQCENLQHEKQEVVLNYESLREMMEILQTELGESAGKISQEFETMKQQQASDVH
ELQQKLRTAFNEKDALLETINRLQGENEKLLSQELVSELESTMKNLKADNSMYLASLGQKDTLL
QELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQRVS
ELTGKLDEILREKSQNDQNIMVQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQS
QQDFAYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKTQLYEFLKQMRPSILEDNEEED
VVTVLKAVGESLVTVKEEKHNLVFEYDARVLELERRIKCLQEESVVQCEELRALVRDSEQEKIL
LRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEKDLVIEHE
NLRLSLEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISK
IKLVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLLEYDKQSEQL
DVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKG
VVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQQTTLMNME
IADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQLL
VKTKKELADAKQAETDHLLLQASLKGELEASQQQVEVYKIQLAEMTSEKHKIHEHLKTSAEQHQ
RTLSAYQQRVVALQEESRTAKAEQAAVTSEFENYKVRVHNVLKQQKNKSVSQAETEGAKQEREH
LEMLIDQLKIKLQDSQNSLQISVSEFQTLQSEHDTLLERHNRMLQETVTKEAELREKLCSAQSE
NTMLKSEHAQTMCQLTSQNEALRNSFRDQVRHLQDEHRKTVETLQHQLSKVETQLFQLKSEPPT
KSPASSHQPSKSLRERRTTDLPLLDMHTVTREEGEGMETTDSESVSSAGTHIQSLEQLLSSPDS
KLERLTEASLWHTEFTKEELAEKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER
NQEREKSVANLEYLKNVLLRFIFLKPGSERERLLPVIDTMLQLSPEEKGKLATVAQGEEESASR
SSGWASYLHSWSGLR

hide sequence

RefSeq Acc Id:

XP_006256437 ⟸ XM_006256375

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEVTDSAQDAVTAAPSGTPKSKLETLPREDLIKFAKKQMMLLQKAKARCTELDKEVEELKSKPV
DGGTDDMIKVLTERLDALLLEKAETEQQCLCLKKENIKMKQEVEDSVTKLEETQKEFEQSHRNY
VREMESVKNELIAVHSEHSKEKAALQRDLEGAVHRQAELLEQLKSQSDSEDNVKKLQEEIQNIT
AAFEEQTSCLQKQLEATSDEKQQEIIHLQKVIEDNAQHYQKDINTFQEEIVQLRATHKEEVNEL
MSQMETLAKEHEAAVNKLKENRVTLCETSETIPENYQCESESLNEDTSDASQENQKCSVALQED
PFAEHTVYDKVRQLEDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKI
NELLLAKEEQSYVVEKLKYEREDLNRQLCCTVEQHNKEIQRLQEHHQKEISELSETFMSGSEKE
KLALMFEIQGLKEQCENLQHEKQEVVLNYESLREMMEILQTELGESAGKISQEFETMKQQQASD
VHELQQKLRTAFNEKDALLETINRLQGENEKLLSQELVSELESTMKNLKADNSMYLASLGQKDT
LLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQR
VSELTGKLDEILREKSQNDQNIMVQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEAL
QSQQDFAYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKTQLYEFLKQMRPSILEDNEE
EDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLELERRIKCLQEESVVQCEELRALVRDSEQEK
ILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEKDLVIE
HENLRLSLEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKI
SKIKLVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLLEYDKQSE
QLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRA
KGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQQTTLMN
MEIADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQ
LLVKTKKELADAKQAETDHLLLQASLKGELEASQQQVEVYKIQLAEMTSEKHKIHEHLKTSAEQ
HQRTLSAYQQRVVALQEESRTAKAEQAAVTSEFENYKVRVHNVLKQQKNKSVSQAETEGAKQER
EHLEMLIDQLKIKLQDSQNSLQISVSEFQTLQSEHDTLLERHNRMLQETVTKEAELREKLCSAQ
SENTMLKSEHAQTMCQLTSQNEALRNSFRDQVRHLQDEHRKTVETLQHQLSKVETQLFQLKSEP
PTKSPASSHQPSKSLRERRTTDLPLLDMHTVTREEGEGMETTDSESVSSAGTHIQSLEQLLSSP
DSKLERLTEASLWHTEFTKEELAEKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRL
ERNQEREKSVANLEYLKNVLLRFIFLKPGSERERLLPVIDTMLQLSPEEKGKLATVAQGEEESA
SRSSGWASYLHSWSGLR

hide sequence

Ensembl Acc Id:

ENSRNOP00000001092 ⟸ ENSRNOT00000001092

RefSeq Acc Id:	XP_038954690 ⟸ XM_039098762
- Peptide Label:	isoform X2

Protein Domains

GRIP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZZL9-F1-model_v2	AlphaFold	D3ZZL9	1-1679	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701580

Promoter ID:

EPDNEW_R12103

Type:

multiple initiation site

Name:

Gcc2_1

Description:

GRIP and coiled-coil domain containing 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	27,832,996 - 27,833,056	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305732	AgrOrtholog
BioCyc Gene	G2FUF-3789	BioCyc
Ensembl Genes	ENSRNOG00000000823	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000001092	ENTREZGENE
Gene3D-CATH	GRIP domain	UniProtKB/Swiss-Prot
InterPro	GCC2_Rab_bind	UniProtKB/Swiss-Prot
	GRIP_dom	UniProtKB/Swiss-Prot
	MT-Golgi_org_protein	UniProtKB/Swiss-Prot
KEGG Report	rno:309798	UniProtKB/Swiss-Prot
NCBI Gene	309798	ENTREZGENE
PANTHER	GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 2	UniProtKB/Swiss-Prot
	NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED	UniProtKB/Swiss-Prot
Pfam	GRIP	UniProtKB/Swiss-Prot
	Rab_bind	UniProtKB/Swiss-Prot
PhenoGen	Gcc2	PhenoGen
PROSITE	GRIP	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000000823	RatGTEx
SMART	Grip	UniProtKB/Swiss-Prot
UniProt	A0A0H2UH94	ENTREZGENE, UniProtKB/TrEMBL
	D3ZZL9	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Gcc2	GRIP and coiled-coil domain containing 2	Lims1_predicted	LIM and senescent cell antigen-like domains 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Lims1_predicted	LIM and senescent cell antigen-like domains 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar