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Gene: Spock3 (SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3) Rattus norvegicus

Analyze

Symbol:

Spock3

Name:

SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3

RGD ID:

1305672

Description:

Predicted to enable several functions, including calcium ion binding activity; collagen binding activity; and metalloendopeptidase inhibitor activity. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space. Orthologous to human SPOCK3 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC306404; sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3; sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3; testican-3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	31,149,698 - 31,582,280 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	31,149,702 - 31,582,398 (-)	Ensembl				GRCr8
mRatBN7.2	16	26,382,895 - 26,815,943 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	26,383,383 - 26,815,205 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	29,739,811 - 30,166,034 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	33,174,030 - 33,600,260 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	29,125,663 - 29,558,060 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	28,372,067 - 28,716,762 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	28,372,411 - 28,716,885 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	28,243,878 - 28,508,371 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	16	28,585,376 - 28,585,974 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	29,337,211 - 29,751,950 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	26,444,211 - 26,865,494 (-)	NCBI		Celera
RGSC_v3.1	16	29,338,682 - 29,751,934 (-)	NCBI
Cytogenetic Map	16	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3-Nitrobenzanthrone (ISO)

6-propyl-2-thiouracil (EXP)

acetohydrazide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP)

CGP 52608 (ISO)

chlordecone (ISO)

copper(II) sulfate (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

dorsomorphin (ISO)

ethanol (ISO)

ethylparaben (ISO)

fenamidone (ISO)

folic acid (ISO)

fulvestrant (ISO)

Lasiocarpine (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

paracetamol (EXP)

paraquat (EXP)

PCB138 (ISO)

phenylmercury acetate (ISO)

raloxifene (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of endopeptidase activity (ISO)

regulation of cell-substrate adhesion (IBA)

Cellular Component

extracellular matrix (IBA,ISO)

extracellular space (IBA,ISO)

Molecular Function

calcium ion binding (IBA,IEA)

glycosaminoglycan binding (IEA,ISO)

metalloendopeptidase inhibitor activity (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11751414	PMID:18757743

Genomics

Comparative Map Data

Spock3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	31,149,698 - 31,582,280 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	31,149,702 - 31,582,398 (-)	Ensembl				GRCr8
mRatBN7.2	16	26,382,895 - 26,815,943 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	26,383,383 - 26,815,205 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	29,739,811 - 30,166,034 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	33,174,030 - 33,600,260 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	29,125,663 - 29,558,060 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	28,372,067 - 28,716,762 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	28,372,411 - 28,716,885 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	28,243,878 - 28,508,371 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	16	28,585,376 - 28,585,974 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	29,337,211 - 29,751,950 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	26,444,211 - 26,865,494 (-)	NCBI		Celera
RGSC_v3.1	16	29,338,682 - 29,751,934 (-)	NCBI
Cytogenetic Map	16	p13	NCBI

SPOCK3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	166,733,384 - 167,234,945 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	166,733,384 - 167,234,796 (-)	Ensembl			hg38	GRCh38
GRCh37	4	167,654,535 - 168,155,645 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	167,891,110 - 168,392,316 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	168,030,065 - 168,530,435	NCBI
Celera	4	164,991,472 - 165,486,546 (-)	NCBI		Celera
Cytogenetic Map	4	q32.3	NCBI
HuRef	4	163,410,545 - 163,907,393 (-)	NCBI		HuRef
CHM1_1	4	167,631,151 - 168,132,191 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	170,090,608 - 170,592,260 (-)	NCBI		T2T-CHM13v2.0

Spock3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	63,404,034 - 63,810,135 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	63,404,043 - 63,810,137 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	62,951,000 - 63,357,101 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	62,951,009 - 63,357,103 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	65,430,243 - 65,835,895 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	65,843,638 - 66,249,290 (+)	NCBI		MGSCv36	mm8
Celera	8	65,512,708 - 65,916,870 (+)	NCBI		Celera
Cytogenetic Map	8	B3.1	NCBI
cM Map	8	31.97	NCBI

Spock3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	38,476,182 - 38,873,299 (+)	Ensembl
ChiLan1.0	NW_004955403	38,476,251 - 38,870,760 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPOCK3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	164,496,748 - 164,993,459 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	164,853,204 - 165,349,118 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	158,941,142 - 159,437,078 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	171,022,442 - 171,517,007 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	171,022,442 - 171,517,005 (-)	Ensembl			panPan2	panpan1.1

SPOCK3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	62,395,713 - 62,661,308 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	62,395,707 - 62,661,312 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	62,643,947 - 62,987,485 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	63,258,302 - 63,662,698 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	63,258,312 - 63,662,841 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	62,479,645 - 62,885,412 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	62,486,843 - 62,894,078 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	62,881,445 - 63,286,336 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Spock3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	19,142,044 - 19,268,651 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936851	38,492 - 442,152 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936851	316,979 - 443,444 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPOCK3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	21,754,539 - 22,121,044 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	21,754,419 - 22,121,051 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	23,434,435 - 23,504,836 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPOCK3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	113,040,250 - 113,531,535 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	92,911,004 - 93,407,584 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spock3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624932	244,836 - 627,930 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624932	243,415 - 628,331 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Spock3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	25,657,018 - 26,040,478 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Spock3
2898 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	544
Count of miRNA genes:	272
Interacting mature miRNAs:	329
Transcripts:	ENSRNOT00000059750
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411664	Foco30	Food consumption QTL 30	11	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	16	4354822	49354822	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	387123	45387123	Rat
1549842	Bp248	Blood pressure QTL 248		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	387123	45387123	Rat
70183	BpQTLcluster13	Blood pressure QTL cluster 13	3.654		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	16	4234212	49757901	Rat
2307172	Activ4	Activity QTL 4	3.71	0.00023	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	1	33425095	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4234212	66955197	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	28468701	73468701	Rat
1354584	Despr6	Despair related QTL 6	3.1	0.0067	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	1	39568015	Rat
2303566	Bw90	Body weight QTL 90	2		body mass (VT:0001259)	body weight (CMO:0000012)	16	1	39568015	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4234212	53708481	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	31058039	76058039	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	839086	66195506	Rat
2306902	Bp339	Blood pressure QTL 339		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	3386790	49757901	Rat
1354625	Despr7	Despair related QTL 7	3.16	0.016	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	16	4744222	49744222	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	839086	66195506	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	839086	66195506	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17730818	72536785	Rat
2293343	Glom16	Glomerulus QTL 16	7.4		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	16	839086	52786090	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	15905802	60905802	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	839086	66195506	Rat
6903319	Bw114	Body weight QTL 114	2.7	0.0037	body mass (VT:0001259)	body weight (CMO:0000012)	16	3301683	48301683	Rat

Markers in Region

D16Wox12

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	16	31,214,928 - 31,215,053 (+)	Marker Load Pipeline
mRatBN7.2	16	26,448,615 - 26,448,740 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	28,437,320 - 28,437,440	NCBI	Rnor6.0
Rnor_5.0	16	28,309,760 - 28,309,880	UniSTS	Rnor5.0
RGSC_v3.4	16	29,403,007 - 29,403,127	UniSTS	RGSC3.4
RGSC_v3.4	16	29,403,006 - 29,403,127	RGD	RGSC3.4
Celera	16	26,508,716 - 26,508,846	UniSTS
RGSC_v3.1	16	29,403,004 - 29,403,125	RGD
Cytogenetic Map	16	p13-p12	UniSTS

AI428471

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	26,383,744 - 26,383,859 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	28,372,436 - 28,372,550	NCBI	Rnor6.0
Rnor_5.0	16	28,244,240 - 28,244,354	UniSTS	Rnor5.0
RGSC_v3.4	16	29,337,573 - 29,337,687	UniSTS	RGSC3.4
Celera	16	26,444,573 - 26,444,687	UniSTS
Cytogenetic Map	16	p13-p12	UniSTS

RH144117

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	26,384,224 - 26,384,519 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	28,372,916 - 28,373,210	NCBI	Rnor6.0
Rnor_5.0	16	28,244,720 - 28,245,014	UniSTS	Rnor5.0
RGSC_v3.4	16	29,338,053 - 29,338,347	UniSTS	RGSC3.4
Celera	16	26,445,053 - 26,445,347	UniSTS
RH 3.4 Map	16	295.71	UniSTS
Cytogenetic Map	16	p13-p12	UniSTS

BF387849

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	26,582,222 - 26,582,377 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	28,571,601 - 28,571,754	NCBI	Rnor6.0
Rnor_5.0	16	28,443,261 - 28,443,414	UniSTS	Rnor5.0
RGSC_v3.4	16	29,536,275 - 29,536,428	UniSTS	RGSC3.4
Celera	16	26,640,691 - 26,640,844	UniSTS
RH 3.4 Map	16	294.79	UniSTS
Cytogenetic Map	16	p13-p12	UniSTS

AU049593

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	26,799,847 - 26,800,021 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	28,700,597 - 28,700,770	NCBI	Rnor6.0
Rnor_5.0	16	28,570,217 - 28,570,390	UniSTS	Rnor5.0
RGSC_v3.4	16	29,736,193 - 29,736,366	UniSTS	RGSC3.4
Cytogenetic Map	16	p13-p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	9	50	153	59	58	27	26	27	5	189	97	3	134	48	65	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059750 ⟹ ENSRNOP00000056503

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	31,149,702 - 31,581,545 (-)	Ensembl
mRatBN7.2 Ensembl	16	26,383,383 - 26,815,205 (-)	Ensembl
Rnor_6.0 Ensembl	16	28,372,411 - 28,716,885 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115514 ⟹ ENSRNOP00000095055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	31,149,702 - 31,582,398 (-)	Ensembl
mRatBN7.2 Ensembl	16	26,383,383 - 26,815,205 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132234 ⟹ ENSRNOP00000106800

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	31,149,702 - 31,413,456 (-)	Ensembl

RefSeq Acc Id:

NM_001107310 ⟹ NP_001100780

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	31,149,702 - 31,581,945 (-)	NCBI
mRatBN7.2	16	26,383,383 - 26,815,605 (-)	NCBI
Rnor_6.0	16	28,372,074 - 28,716,354 (-)	NCBI
Rnor_5.0	16	28,243,878 - 28,508,371 (-)	NCBI
Rnor_5.0	16	28,585,376 - 28,585,974 (-)	NCBI
RGSC_v3.4	16	29,337,211 - 29,751,950 (-)	RGD
Celera	16	26,444,211 - 26,865,494 (-)	RGD

Sequence:

show sequence

CCGGGCGCAGGGAGCTGAGTGGACGGCTGAGACGGCGGCGCGTGCAGCAGCTCCAGCGAGAAGC
GAGTTGCCAGAGCCAGGCTGCATTTCCATCAGGAGCTGCGAGCTCCGTGCCCGCTCCCAGCAAG
ATGCTCAAGGTGTCAGCCTTATTGTGTGTGTGTGCAGCGGCTTGGTGCAGCCAGACTCTTGCAG
CTGCTGCGGCGGTGGCTGTGGCCGGGGGGCGGTCGGACGGCGGTAATTTTCTGGATGAAAAACA
ATGGCTCACCACAGTCTCTCAGTATGACAAGGAAGTCGGACAGTGGAACAAATTCCGAGACGTA
AGTGATGAAGTAGAGGATGATTATTTCCGCACTTGGAATCCTGGAAAACCAATTGATCAAGCTT
TAGATCCTGCTAGGGACCCATGCTTAAAGACGAAATGCAGCCGCCACAAAGTCTGCATTACTCA
AGATGCTCAGACTGCACTGTGCATCAGTCACCGGAGGCTCACACACAGTATGAAAGAAGTAGGA
GGAAGCCATAAGCAATGGAGAGGTCTCCCGTCATCTACCTGTAAGCAGTGCCCTATAGCCTATG
CCAGCCCGGTCTGTGGTTCCGATGGGCATTCTTACTCTTCACAGTGCAAACTAGAATATCAGGC
ATGTGTCTTAGGAAAACAGATCTCTATCAAATGTGAAGGGCGATGCCCGTGTCCCTCCGATAAG
TCCATGAGCACAGGCAGAAATGTAAAGAGAGCCTGCAGTGACCTGGAATTCAGAGAAGTGGCAA
ACAGACTGCGAGACTGGTTCAAGGCGCTTCATGAGAGTGGAAGCCAGAACAAGAGGACAAAAGC
ATTGCTGAGGCCTGAGAGAAGCAGGTTTGATACCAGTATTTTGCCAATTTGCAAGGATTCACTT
GGCTGGATGTTTAATAGACTTGATACAAACTACGACCTGTTATTGGACCAGTCAGAGCTTGGCA
GCATTTACCTTGATAAGAATGAGCATTGCACCAAGGCGTTCTTCAACTCTTGTGATACATACAA
GGACAGTTTGATATCTAACAATGAATGGTGCTACTGCTTCCAGAGACAGCAAGACCCACCTTGC
CACACTGAGCTCAGCAAAATTCAGAAGCGACAAGGGATAAAGAAGCTCCTAGGACAGTACCTCC
CACTCTGTGATGAAGATGGTTTCTACAAGCCAACACAATGCCATGGAAGTGTAGGGCAGTGCTG
GTGTGTTGACAGATATGGAAATGAAGTTGTGGGATCTAGAATAAATGGTGTTGCAGATTGTGCT
ATAGACTTTGAGATTTCTGGAGACTTTGCAAGTGGAGATTTTCGTGAATGGACTGATGATGAAG
GTGAAGAAGATGACATGAATGATAAGGATGATATTGAAGACGATGATGAAGATGAAGGGGATGA
TGATGATGATGGGGATGACCACGATGGATATATCTGACCAGTGACAACTAATGTCAATGAATTC
TACATTTTTAATATTTACAATAATAATAGCATATTGAGAATTTCCTTCTTATCCCTAAACAAAG
TGATTCTAAACCCGACATATATTTTGTATAATTATTTCAAATATTGAAGCTAAAATCATAGAAC
TTTATGTTTAAATTAGAATTATTTAGTTTCAGTTTTCATATGCCTTAGAAAAAAAGGAAACACA
TATGGGTTGCAGCCTGAATATAAAAGTTGTAAAGATTACTGTAACAAAATTTCATAAGAAAATA
CAGACAAATAAAATAACAATGAATGTGTGCTTGGGATCCTGTGTGTTGCTTTTAATGACAGATT
TTATAAGTTAAATTTATGGTAGCTTGCTAATGACATGAACCACAATAATTTCATCAATTAATTC
CTAATGTAGATTTCAATTCAAACTTAACATCTTCCCAAACTAATGGTTGGCATATTAAGAAAAA
TGGCTCATGGTAAAATGGAATGGTTTTCATTTTAATTATGAAATTATACTGGGTATTATTAGAT
ATTACATGCAATGCAACGTGTGGTAATCCTTGGGTGCTGAAAGTTAAAACCTTAGTCTTTCTTT
CTACTTTGTAATTTTAACGGCATTGCTTATCAGGTAGAATTTTAAAAATATTCCTAGACATCCT
CATTTCTAGATTTCTCTCTCTGACTAGTAATTACGTATAGAATTTCAGTTAGAAAGAAACAGAC
TCATTTCAACAACTGTTCCATTAAATATATTTCATTTGCACCAAGGTCAATTTTGAAACCATGG
ACTCTCAGTTTCAGTTTTCATTTTCTATGAGATTTTGCATTTGATCTTGGAATCATGCCATTTT
TTTAGTGGTACTAAAATTAGAGACCGTGTTGTATGGTGCCTTGCAAAAATAGAAATAGAAAGGG
TTAGCATGTATATCAGTATAAGAGACTAGGCAATGTGTAAGCACACATAATTAACAAATTATTG
ATATTAAAATAGTGCTGAAATGAAGAAAAATGGAATATGTTTCTTTCTTTTTTTCTATTGTTAC
ATAATCCCATATGGACTTGTTTATAATTATTGTGAAGAATAGCATTTAAGATTAACTGTACCAA
AAGTTACTTTGCTCACTATACATCAGTTAGCATGTTAATTGTGTAGATATTTTGACATACCACC
ACCTTTGGGTATATCAGACCAATAGTTTTGTGCTCATAACAGAAGTGGGAAAACCTGTTGAAAT
TTACACATTGATATCTTTCACTTCAACATTGAATTTACAGATTTCCTGGAATATTATTCATAAG
AACACAAATTTGGTGAACTCTTGCCATTTAATTTATATACAAGAAATAAAAACTTTAATCTTGA
ACTTACATATAATATTTAAGCTATAATGTATTTTCTTTTTTATTGTTTATGTATAGTTTACGAA
ATAAAGAATCTTGTAACCAAAGTAAACAGTTCTTAATGATTTTCTGGGATATATATATAATAGC
ATGAAGAGTTTTTAATTTATTCCTTAACTCTACAAAATAACATGCCACACCAGAGTCAAGAAAT
ATTTCTGAGTTTACTTTTACAGTTTGTAAATCTGAGTTGTTATTGTATTAAGTACAATAAGATT
ATCTATCTTTGTTGGTTTATTTTAACCCGTTTATTTGTCATAATATTGCAAAATAAATACTTTT
CTTTCC

hide sequence

RefSeq Acc Id:

XM_017600103 ⟹ XP_017455592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	31,149,698 - 31,582,280 (-)	NCBI
mRatBN7.2	16	26,382,895 - 26,815,943 (-)	NCBI
Rnor_6.0	16	28,372,067 - 28,716,762 (-)	NCBI

Sequence:

show sequence

TCAGAGCAAAGTCCCATGGATTCTCACTCCGTGATGCGTAAAGTTTTCTTCTGATCTCTTTTCT
CATAGCTGCCTCACCACCCTTGAAATTGAAGAACAGGAGCAGCAGAGAGGGAGATACAGTGCTG
AGCCGGCGTTCAATCCAAGAGAAGAGAGAATGAGCAGGCTGTGCCTGGAACATGGGAACCTTTT
CTGGAGGCAAGAGATGCTCAAGGTGTCAGCCTTATTGTGTGTGTGTGCAGCGGCTTGGTGCAGC
CAGACTCTTGCAGCTGCTGCGGCGGTGGCTGTGGCCGGGGGGCGGTCGGACGGCGGTAATTTTC
TGGATGAAAAACAATGGCTCACCACAGTCTCTCAGTATGACAAGGAAGTCGGACAGTGGAACAA
ATTCCGAGACGATGATTATTTCCGCACTTGGAATCCTGGAAAACCAATTGATCAAGCTTTAGAT
CCTGCTAGGGACCCATGCTTAAAGACGAAATGCAGCCGCCACAAAGTCTGCATTACTCAAGATG
CTCAGACTGCACTGTGCATCAGTCACCGGAGGCTCACACACAGTATGAAAGAAGTAGGAGGAAG
CCATAAGCAATGGAGAGGTCTCCCGTCATCTACCTGTAAGCAGTGCCCTATAGCCTATGCCAGC
CCGGTCTGTGGTTCCGATGGGCATTCTTACTCTTCACAGTGCAAACTAGAATATCAGGCATGTG
TCTTAGGAAAACAGATCTCTATCAAATGTGAAGGGCGATGCCCGTGTCCCTCCGATAAGTCCAT
GAGCACAGGCAGAAATGTAAAGAGAGCCTGCAGTGACCTGGAATTCAGAGAAGTGGCAAACAGA
CTGCGAGACTGGTTCAAGGCGCTTCATGAGAGTGGAAGCCAGAACAAGAGGACAAAAGCATTGC
TGAGGCCTGAGAGAAGCAGGTTTGATACCAGTATTTTGCCAATTTGCAAGGATTCACTTGGCTG
GATGTTTAATAGACTTGATACAAACTACGACCTGTTATTGGACCAGTCAGAGCTTGGCAGCATT
TACCTTGATAAGAATGAGCATTGCACCAAGGCGTTCTTCAACTCTTGTGATACATACAAGGACA
GTTTGATATCTAACAATGAATGGTGCTACTGCTTCCAGAGACAGCAAGACCCACCTTGCCACAC
TGAGCTCAGCAAAATTCAGAAGCGACAAGGGATAAAGAAGCTCCTAGGACAGTACCTCCCACTC
TGTGATGAAGATGGTTTCTACAAGCCAACACAATGCCATGGAAGTGTAGGGCAGTGCTGGTGTG
TTGACAGATATGGAAATGAAGTTGTGGGATCTAGAATAAATGGTGTTGCAGATTGTGCTATAGA
CTTTGAGATTTCTGGAGACTTTGCAAGTGGAGATTTTCGTGAATGGACTGATGATGAAGGTGAA
GAAGATGACATGAATGATAAGGATGATATTGAAGACGATGATGAAGATGAAGGGGATGATGATG
ATGATGGGGATGACCACGATGGATATATCTGACCAGTGACAACTAATGTCAATGAATTCTACAT
TTTTAATATTTACAATAATAATAGCATATTGAGAATTTCCTTCTTATCCCTAAACAAAGTGATT
CTAAACCCGACATATATTTTGTATAATTATTTCAAATATTGAAGCTAAAATCATAGAACTTTAT
GTTTAAATTAGAATTATTTAGTTTCAGTTTTCATATGCCTTAGAAAAAAAGGAAACACATATGG
GTTGCAGCCTGAATATAAAAGTTGTAAAGATTACTGTAACAAAATTTCATAAGAAAATACAGAC
AAATAAAATAACAATGAATGTGTGCTTGGGATCCTGTGTGTTGCTTTTAATGACAGATTTTATA
AGTTAAATTTATGGTAGCTTGCTAATGACATGAACCACAATAATTTCATCAATTAATTCCTAAT
GTAGATTTCAATTCAAACTTAACATCTTCCCAAACTAATGGTTGGCATATTAAGAAAAATGGCT
CATGGTAAAATGGAATGGTTTTCATTTTAATTATGAAATTATTCTGGGTATTATTAGATATTAC
ATGCAATGCAACGTGTGGTAATCCTTGGGTGCTGAAAGTTAAAACCTTAGTCTTTCTTTCTACT
TTGTAATTTTAATGGCATTGCTTATCAGGTAGAATTTTAAAAATATTCCTAGACATCCTCATTT
CTAGATTTCTCTCTCTGACTAGTAATTATGTATAGAATTTCAGTTAGAAAGAAACAGACTCATT
TCAACAACTGTTCCATTAAATATATTTTATTTGCACCAAGGTCAATTTTGAAACCATGGACTCT
CAGTTTTAGTTTTCATTTTCTATGAGATTTTGCATTTGATCTTGGAATCATGCCATTTTTTTAG
TGGTACTAAAATTAGAGACCGTGTTGTATGGTGCCTTGCAAAAATAGAAATAGAAAGGGTTAGC
ATGTATATCAGTATAAGAGACTAGGCAATGTGTAAGCACACATAATTAACAAATTATTGATATT
AAAATAGTGCTGAAATGAAGAAAAATGGAATATGTTTCTTTCTTTTTTTCTATTGTTACATAAT
CCCATATGGACTTGTTTATAATTATTGTGAAGAATAGCATTTAAGATTAACTGTACCAAAAGTT
ACTTTGCTCACTATACATCAGTTAGCATGTTAATTGTGTAGATATTTTGACATACCACCACCTT
TGGGTATATCAGACCAATAGTTTTGTGCTCATAACAGAAGTGGGAAAACCTGTTGAAATTTACA
CATTGATATCTTTCACTTCAACATTGAATTTACAGATTTCCTGGAATATTATTCATAAGAACAC
AAATTTGGTGAACTCTTGCCATTTAATTTATATACAAGAAATAAAAACTTTAATCTTGAACTTA
CATATAATATTTAAGCTATAATGTATTTTCTTTTTTATTGTTTATGTATAGTTTACGAAATAAA
GAATCTTGTAACCAAAGTAAACAGTTCTTAATGATTTTCTGGGATATATATATAATAGCATGAA
GAGTTTTTAATTTATTCCTTAACTCTACAAAATAACATGCCACACCAGAGTCAAGAAATATTTC
TGAGTTTACTTTTACAGTTTGTAAATCTGAGTTGTTATTGTATTAAGTACAATAAGATTATCTA
TCTTTGTTGGTTTATTTTAACCCGTTTATTTGTCATAATATTGCAAAATAAATACTTTTCTTTC
CAAAAGAA

hide sequence

RefSeq Acc Id:

XM_017600105 ⟹ XP_017455594

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	31,149,698 - 31,581,949 (-)	NCBI
mRatBN7.2	16	26,382,895 - 26,815,609 (-)	NCBI
Rnor_6.0	16	28,372,067 - 28,716,357 (-)	NCBI

Sequence:

show sequence

GCGCCGGGCGCAGGGAGCTGAGTGGACGGCTGAGACGGCGGCGCGTGCAGCAGCTCCAGCGAGA
AGCGAGTTGCCAGAGCCAGGCTGCATTTCCATCAGGAGCTGCGAGCTCCGTGCCCGCTCCCAGC
AAGATGCTCAAGGTGTCAGCCTTATTGTGTGTGTGTGCAGCGGCTTGGTGCAGCCAGACTCTTG
CAGCTGCTGCGGCGGTGGCTGTGGCCGGGGGGCGGTCGGACGGCGGTAATTTTCTGGATGAAAA
ACAATGGCTCACCACAGTCTCTCAGTATGACAAGGAAGTCGGACAGTGGAACAAATTCCGAGAC
GATGATTATTTCCGCACTTGGAATCCTGGAAAACCAATTGATCAAGCTTTAGATCCTGCTAGGG
ACCCATGCTTAAAGACGAAATGCAGCCGCCACAAAGTCTGCATTACTCAAGATGCTCAGACTGC
ACTGTGCATCAGTCACCGGAGGCTCACACACAGTATGAAAGAAGTAGGAGGAAGCCATAAGCAA
TGGAGAGGTCTCCCGTCATCTACCTGTAAGCAGTGCCCTATAGCCTATGCCAGCCCGGTCTGTG
GTTCCGATGGGCATTCTTACTCTTCACAGTGCAAACTAGAATATCAGGCATGTGTCTTAGGAAA
ACAGATCTCTATCAAATGTGAAGGGCGATGCCCGTGTCCCTCCGATAAGTCCATGAGCACAGGC
AGAAATGTAAAGAGAGCCTGCAGTGACCTGGAATTCAGAGAAGTGGCAAACAGACTGCGAGACT
GGTTCAAGGCGCTTCATGAGAGTGGAAGCCAGAACAAGAGGACAAAAGCATTGCTGAGGCCTGA
GAGAAGCAGGTTTGATACCAGTATTTTGCCAATTTGCAAGGATTCACTTGGCTGGATGTTTAAT
AGACTTGATACAAACTACGACCTGTTATTGGACCAGTCAGAGCTTGGCAGCATTTACCTTGATA
AGAATGAGCATTGCACCAAGGCGTTCTTCAACTCTTGTGATACATACAAGGACAGTTTGATATC
TAACAATGAATGGTGCTACTGCTTCCAGAGACAGCAAGACCCACCTTGCCACACTGAGCTCAGC
AAAATTCAGAAGCGACAAGGGATAAAGAAGCTCCTAGGACAGTACCTCCCACTCTGTGATGAAG
ATGGTTTCTACAAGCCAACACAATGCCATGGAAGTGTAGGGCAGTGCTGGTGTGTTGACAGATA
TGGAAATGAAGTTGTGGGATCTAGAATAAATGGTGTTGCAGATTGTGCTATAGACTTTGAGATT
TCTGGAGACTTTGCAAGTGGAGATTTTCGTGAATGGACTGATGATGAAGGTGAAGAAGATGACA
TGAATGATAAGGATGATATTGAAGACGATGATGAAGATGAAGGGGATGATGATGATGATGGGGA
TGACCACGATGGATATATCTGACCAGTGACAACTAATGTCAATGAATTCTACATTTTTAATATT
TACAATAATAATAGCATATTGAGAATTTCCTTCTTATCCCTAAACAAAGTGATTCTAAACCCGA
CATATATTTTGTATAATTATTTCAAATATTGAAGCTAAAATCATAGAACTTTATGTTTAAATTA
GAATTATTTAGTTTCAGTTTTCATATGCCTTAGAAAAAAAGGAAACACATATGGGTTGCAGCCT
GAATATAAAAGTTGTAAAGATTACTGTAACAAAATTTCATAAGAAAATACAGACAAATAAAATA
ACAATGAATGTGTGCTTGGGATCCTGTGTGTTGCTTTTAATGACAGATTTTATAAGTTAAATTT
ATGGTAGCTTGCTAATGACATGAACCACAATAATTTCATCAATTAATTCCTAATGTAGATTTCA
ATTCAAACTTAACATCTTCCCAAACTAATGGTTGGCATATTAAGAAAAATGGCTCATGGTAAAA
TGGAATGGTTTTCATTTTAATTATGAAATTATTCTGGGTATTATTAGATATTACATGCAATGCA
ACGTGTGGTAATCCTTGGGTGCTGAAAGTTAAAACCTTAGTCTTTCTTTCTACTTTGTAATTTT
AATGGCATTGCTTATCAGGTAGAATTTTAAAAATATTCCTAGACATCCTCATTTCTAGATTTCT
CTCTCTGACTAGTAATTATGTATAGAATTTCAGTTAGAAAGAAACAGACTCATTTCAACAACTG
TTCCATTAAATATATTTTATTTGCACCAAGGTCAATTTTGAAACCATGGACTCTCAGTTTTAGT
TTTCATTTTCTATGAGATTTTGCATTTGATCTTGGAATCATGCCATTTTTTTAGTGGTACTAAA
ATTAGAGACCGTGTTGTATGGTGCCTTGCAAAAATAGAAATAGAAAGGGTTAGCATGTATATCA
GTATAAGAGACTAGGCAATGTGTAAGCACACATAATTAACAAATTATTGATATTAAAATAGTGC
TGAAATGAAGAAAAATGGAATATGTTTCTTTCTTTTTTTCTATTGTTACATAATCCCATATGGA
CTTGTTTATAATTATTGTGAAGAATAGCATTTAAGATTAACTGTACCAAAAGTTACTTTGCTCA
CTATACATCAGTTAGCATGTTAATTGTGTAGATATTTTGACATACCACCACCTTTGGGTATATC
AGACCAATAGTTTTGTGCTCATAACAGAAGTGGGAAAACCTGTTGAAATTTACACATTGATATC
TTTCACTTCAACATTGAATTTACAGATTTCCTGGAATATTATTCATAAGAACACAAATTTGGTG
AACTCTTGCCATTTAATTTATATACAAGAAATAAAAACTTTAATCTTGAACTTACATATAATAT
TTAAGCTATAATGTATTTTCTTTTTTATTGTTTATGTATAGTTTACGAAATAAAGAATCTTGTA
ACCAAAGTAAACAGTTCTTAATGATTTTCTGGGATATATATATAATAGCATGAAGAGTTTTTAA
TTTATTCCTTAACTCTACAAAATAACATGCCACACCAGAGTCAAGAAATATTTCTGAGTTTACT
TTTACAGTTTGTAAATCTGAGTTGTTATTGTATTAAGTACAATAAGATTATCTATCTTTGTTGG
TTTATTTTAACCCGTTTATTTGTCATAATATTGCAAAATAAATACTTTTCTTTCCAAAAGAA

hide sequence

RefSeq Acc Id:

XM_039094497 ⟹ XP_038950425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	31,149,698 - 31,299,503 (-)	NCBI
mRatBN7.2	16	26,382,895 - 26,533,419 (-)	NCBI

RefSeq Acc Id:

XM_063275407 ⟹ XP_063131477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	31,149,698 - 31,582,150 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100780	(Get FASTA)	NCBI Sequence Viewer
	NP_001423578	(Get FASTA)	NCBI Sequence Viewer
	NP_001423579	(Get FASTA)	NCBI Sequence Viewer
	XP_017455592	(Get FASTA)	NCBI Sequence Viewer
	XP_017455594	(Get FASTA)	NCBI Sequence Viewer
	XP_038950425	(Get FASTA)	NCBI Sequence Viewer
	XP_063131477	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75991	(Get FASTA)	NCBI Sequence Viewer
	EDL75992	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056503.5
	ENSRNOP00000095055
	ENSRNOP00000095055.2
	ENSRNOP00000106800.1

RefSeq Acc Id:

NP_001100780 ⟸ NM_001107310

- Peptide Label:

precursor

- Sequence:

show sequence

MLKVSALLCVCAAAWCSQTLAAAAAVAVAGGRSDGGNFLDEKQWLTTVSQYDKEVGQWNKFRDV
SDEVEDDYFRTWNPGKPIDQALDPARDPCLKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVG
GSHKQWRGLPSSTCKQCPIAYASPVCGSDGHSYSSQCKLEYQACVLGKQISIKCEGRCPCPSDK
SMSTGRNVKRACSDLEFREVANRLRDWFKALHESGSQNKRTKALLRPERSRFDTSILPICKDSL
GWMFNRLDTNYDLLLDQSELGSIYLDKNEHCTKAFFNSCDTYKDSLISNNEWCYCFQRQQDPPC
HTELSKIQKRQGIKKLLGQYLPLCDEDGFYKPTQCHGSVGQCWCVDRYGNEVVGSRINGVADCA
IDFEISGDFASGDFREWTDDEGEEDDMNDKDDIEDDDEDEGDDDDDGDDHDGYI

hide sequence

RefSeq Acc Id:	XP_017455592 ⟸ XM_017600103
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AMA2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRLCLEHGNLFWRQEMLKVSALLCVCAAAWCSQTLAAAAAVAVAGGRSDGGNFLDEKQWLTTV SQYDKEVGQWNKFRDDDYFRTWNPGKPIDQALDPARDPCLKTKCSRHKVCITQDAQTALCISHR RLTHSMKEVGGSHKQWRGLPSSTCKQCPIAYASPVCGSDGHSYSSQCKLEYQACVLGKQISIKC EGRCPCPSDKSMSTGRNVKRACSDLEFREVANRLRDWFKALHESGSQNKRTKALLRPERSRFDT SILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEHCTKAFFNSCDTYKDSLISNNEWCY CFQRQQDPPCHTELSKIQKRQGIKKLLGQYLPLCDEDGFYKPTQCHGSVGQCWCVDRYGNEVVG SRINGVADCAIDFEISGDFASGDFREWTDDEGEEDDMNDKDDIEDDDEDEGDDDDDGDDHDGYI hide sequence

RefSeq Acc Id:

XP_017455594 ⟸ XM_017600105

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLKVSALLCVCAAAWCSQTLAAAAAVAVAGGRSDGGNFLDEKQWLTTVSQYDKEVGQWNKFRDD
DYFRTWNPGKPIDQALDPARDPCLKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVGGSHKQW
RGLPSSTCKQCPIAYASPVCGSDGHSYSSQCKLEYQACVLGKQISIKCEGRCPCPSDKSMSTGR
NVKRACSDLEFREVANRLRDWFKALHESGSQNKRTKALLRPERSRFDTSILPICKDSLGWMFNR
LDTNYDLLLDQSELGSIYLDKNEHCTKAFFNSCDTYKDSLISNNEWCYCFQRQQDPPCHTELSK
IQKRQGIKKLLGQYLPLCDEDGFYKPTQCHGSVGQCWCVDRYGNEVVGSRINGVADCAIDFEIS
GDFASGDFREWTDDEGEEDDMNDKDDIEDDDEDEGDDDDDGDDHDGYI

hide sequence

Ensembl Acc Id:

ENSRNOP00000056503 ⟸ ENSRNOT00000059750

RefSeq Acc Id:	XP_038950425 ⟸ XM_039094497
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000095055 ⟸ ENSRNOT00000115514

RefSeq Acc Id:	XP_063131477 ⟸ XM_063275407
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000106800 ⟸ ENSRNOT00000132234

Protein Domains

Kazal-like Thyroglobulin type-1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZUT1-F1-model_v2	AlphaFold	D3ZUT1	1-432	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305672	AgrOrtholog
BioCyc Gene	G2FUF-11608	BioCyc
Ensembl Genes	ENSRNOG00000029903	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000059750.6	UniProtKB/TrEMBL
	ENSRNOT00000115514	ENTREZGENE
	ENSRNOT00000115514.2	UniProtKB/TrEMBL
	ENSRNOT00000132234.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.60.30	UniProtKB/TrEMBL
	4.10.800.10	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-like_dom	UniProtKB/TrEMBL
	Kazal_dom_sf	UniProtKB/TrEMBL
	Prot_inh_Kazal	UniProtKB/TrEMBL
	SPARC/Testican_Ca-bd-dom	UniProtKB/TrEMBL
	Thyroglobulin_1	UniProtKB/TrEMBL
	Thyroglobulin_1_sf	UniProtKB/TrEMBL
KEGG Report	rno:306404	UniProtKB/TrEMBL
NCBI Gene	306404	ENTREZGENE
PANTHER	SPARC OSTEONECTIN	UniProtKB/TrEMBL
	TESTICAN-3	UniProtKB/TrEMBL
Pfam	Kazal_2	UniProtKB/TrEMBL
	SPARC_Ca_bdg	UniProtKB/TrEMBL
	Thyroglobulin_1	UniProtKB/TrEMBL
PhenoGen	Spock3	PhenoGen
PROSITE	KAZAL_2	UniProtKB/TrEMBL
	THYROGLOBULIN_1_1	UniProtKB/TrEMBL
	THYROGLOBULIN_1_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000029903	RatGTEx
SMART	KAZAL	UniProtKB/TrEMBL
	SM00211	UniProtKB/TrEMBL
Superfamily-SCOP	SSF100895	UniProtKB/TrEMBL
	SSF47473	UniProtKB/TrEMBL
	Thyroglobulin_1	UniProtKB/TrEMBL
UniProt	A0A8I6AMA2	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LPK4_RAT	UniProtKB/TrEMBL
	A6KFQ0_RAT	UniProtKB/TrEMBL
	D3ZUT1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-19	Spock3	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3	Spock3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-18	Spock3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3	Spock3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Spock3	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	Spock3_predicted	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Spock3_predicted	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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