Stn1 (STN1 subunit of CST complex) - Rat Genome Database

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Gene: Stn1 (STN1 subunit of CST complex) Rattus norvegicus
Analyze
Symbol: Stn1
Name: STN1 subunit of CST complex
RGD ID: 1305637
Description: Predicted to enable single-stranded telomeric DNA binding activity. Predicted to be involved in negative regulation of telomere maintenance via telomerase; positive regulation of DNA replication; and telomere maintenance via telomere lengthening. Predicted to be located in chromosome, telomeric region and nucleus. Predicted to be part of CST complex. Human ortholog(s) of this gene implicated in melanoma. Orthologous to human STN1 (STN1 subunit of CST complex); INTERACTS WITH 3-chloropropane-1,2-diol; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CST complex subunit STN1; LOC294025; Obfc1; oligonucleotide/oligosaccharide-binding fold containing 1; oligonucleotide/oligosaccharide-binding fold-containing protein 1; STN1, CST complex subunit; suppressor of cdc thirteen homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81256,336,916 - 256,371,143 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1256,315,367 - 256,370,736 (-)EnsemblGRCr8
mRatBN7.21246,391,311 - 246,429,844 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1246,395,613 - 246,429,531 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1254,523,111 - 254,556,301 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01261,216,742 - 261,250,525 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01253,864,689 - 253,898,413 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01267,281,786 - 267,315,714 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1267,281,764 - 267,315,729 (-)Ensemblrn6Rnor6.0
Rnor_5.01274,714,582 - 274,748,515 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41252,875,485 - 252,909,299 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1242,163,081 - 242,196,275 (-)NCBICelera
RGSC_v3.11253,140,058 - 253,173,872 (-)NCBI
Cytogenetic Map1q54NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome, telomeric region  (IEA,ISO,ISS)
CST complex  (IBA,IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The effect on melanoma risk of genes previously associated with telomere length. Iles MM, etal., J Natl Cancer Inst. 2014 Sep 17;106(10). pii: dju267. doi: 10.1093/jnci/dju267. Print 2014 Oct.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:19119139   PMID:19135898   PMID:19648609   PMID:19854130   PMID:22763445   PMID:30361391  


Genomics

Comparative Map Data
Stn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81256,336,916 - 256,371,143 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1256,315,367 - 256,370,736 (-)EnsemblGRCr8
mRatBN7.21246,391,311 - 246,429,844 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1246,395,613 - 246,429,531 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1254,523,111 - 254,556,301 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01261,216,742 - 261,250,525 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01253,864,689 - 253,898,413 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01267,281,786 - 267,315,714 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1267,281,764 - 267,315,729 (-)Ensemblrn6Rnor6.0
Rnor_5.01274,714,582 - 274,748,515 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41252,875,485 - 252,909,299 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1242,163,081 - 242,196,275 (-)NCBICelera
RGSC_v3.11253,140,058 - 253,173,872 (-)NCBI
Cytogenetic Map1q54NCBI
STN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810103,877,569 - 103,918,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10103,856,793 - 103,918,762 (-)Ensemblhg38GRCh38
GRCh3710105,637,327 - 105,677,942 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610105,632,290 - 105,667,956 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3410105,632,291 - 105,667,956NCBI
Celera1099,377,215 - 99,418,065 (-)NCBICelera
Cytogenetic Map10q24.33NCBI
HuRef1099,268,253 - 99,309,098 (-)NCBIHuRef
CHM1_110105,921,069 - 105,961,741 (-)NCBICHM1_1
T2T-CHM13v2.010104,764,812 - 104,805,419 (-)NCBIT2T-CHM13v2.0
Stn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391947,489,470 - 47,534,284 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1947,489,472 - 47,525,946 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381947,501,031 - 47,545,845 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1947,501,033 - 47,537,507 (-)Ensemblmm10GRCm38
MGSCv371947,575,538 - 47,611,510 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361947,554,359 - 47,590,331 (-)NCBIMGSCv36mm8
Celera1948,260,153 - 48,296,160 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1939.64NCBI
Stn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554856,748,234 - 6,784,762 (+)Ensembl
ChiLan1.0NW_0049554856,748,682 - 6,784,119 (+)NCBIChiLan1.0ChiLan1.0
STN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28115,743,244 - 115,853,180 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110115,748,572 - 115,810,026 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010100,456,589 - 100,518,010 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110103,937,298 - 103,977,847 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10103,942,422 - 103,977,847 (-)EnsemblpanPan2panpan1.1
STN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12816,203,607 - 16,246,468 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2816,204,073 - 16,246,058 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2816,370,945 - 16,417,425 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02816,680,396 - 16,722,769 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2816,680,064 - 16,722,751 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12816,229,167 - 16,271,519 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02816,257,383 - 16,299,737 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02816,395,850 - 16,438,460 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721330,627,520 - 30,663,741 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366002,230,705 - 2,266,968 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366002,230,754 - 2,266,956 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14114,810,201 - 114,851,025 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.114114,808,217 - 114,851,130 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214124,724,030 - 124,766,460 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1996,919,584 - 96,967,941 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl996,915,951 - 96,967,394 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604858,037,595 - 58,085,843 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248312,999,800 - 3,030,443 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248312,999,061 - 3,030,447 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Stn1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1247,034,585 - 47,067,407 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stn1
289 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:75
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000027614
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1224633915269633915Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1578775Iddm21Insulin dependent diabetes mellitus QTL 214.13blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1245782829270518180Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1212738576257738576Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1218829748263829748Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1248619887269633915Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1247133834270518180Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1194786607262083703Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1237995023269633915Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1234540191270518180Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1255849111270518180Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1241569529269633915Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
724538Kidm1Kidney mass QTL 13.2kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1223134011262090599Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1243953669270518180Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat
724533Rf51Renal function QTL 515.30.0002kidney plasma flow trait (VT:0005524)renal plasma flow (CMO:0001914)1228180370266453608Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000027614   ⟹   ENSRNOP00000027614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1256,335,199 - 256,370,736 (-)Ensembl
mRatBN7.2 Ensembl1246,395,613 - 246,429,531 (-)Ensembl
Rnor_6.0 Ensembl1267,281,764 - 267,315,729 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099473   ⟹   ENSRNOP00000087203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1256,342,187 - 256,370,736 (-)Ensembl
mRatBN7.2 Ensembl1246,400,880 - 246,429,531 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130024   ⟹   ENSRNOP00000101153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1256,336,027 - 256,370,736 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000141536   ⟹   ENSRNOP00000104965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1256,315,367 - 256,370,736 (-)Ensembl
RefSeq Acc Id: NM_001011943   ⟹   NP_001011943
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81256,336,922 - 256,370,736 (-)NCBI
mRatBN7.21246,395,613 - 246,429,428 (-)NCBI
Rnor_6.01267,281,794 - 267,315,588 (-)NCBI
Rnor_5.01274,714,582 - 274,748,515 (-)NCBI
RGSC_v3.41252,875,485 - 252,909,299 (-)RGD
Celera1242,163,081 - 242,196,275 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231472   ⟹   XP_006231534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81256,336,916 - 256,371,116 (-)NCBI
mRatBN7.21246,391,311 - 246,429,828 (-)NCBI
Rnor_6.01267,281,786 - 267,315,714 (-)NCBI
Rnor_5.01274,714,582 - 274,748,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231474   ⟹   XP_006231536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81256,336,916 - 256,371,123 (-)NCBI
mRatBN7.21246,391,311 - 246,429,835 (-)NCBI
Rnor_6.01267,281,788 - 267,315,714 (-)NCBI
Rnor_5.01274,714,582 - 274,748,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006231475   ⟹   XP_006231537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81256,336,916 - 256,359,972 (-)NCBI
mRatBN7.21246,391,311 - 246,419,371 (-)NCBI
Rnor_6.01267,281,786 - 267,306,875 (-)NCBI
Rnor_5.01274,714,582 - 274,748,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589043   ⟹   XP_017444532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81256,336,916 - 256,371,123 (-)NCBI
mRatBN7.21246,391,311 - 246,429,835 (-)NCBI
Rnor_6.01267,281,786 - 267,315,714 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039109088   ⟹   XP_038965016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81256,336,916 - 256,371,123 (-)NCBI
mRatBN7.21246,391,311 - 246,429,836 (-)NCBI
RefSeq Acc Id: XM_039109099   ⟹   XP_038965027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81256,348,741 - 256,371,143 (-)NCBI
mRatBN7.21246,407,177 - 246,429,844 (-)NCBI
RefSeq Acc Id: NP_001011943   ⟸   NM_001011943
- UniProtKB: Q6AYD2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006231534   ⟸   XM_006231472
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006231537   ⟸   XM_006231475
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006231536   ⟸   XM_006231474
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017444532   ⟸   XM_017589043
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000027614   ⟸   ENSRNOT00000027614
RefSeq Acc Id: XP_038965016   ⟸   XM_039109088
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965027   ⟸   XM_039109099
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000087203   ⟸   ENSRNOT00000099473
Ensembl Acc Id: ENSRNOP00000101153   ⟸   ENSRNOT00000130024
Ensembl Acc Id: ENSRNOP00000104965   ⟸   ENSRNOT00000141536
Protein Domains
CST complex subunit Stn1 N-terminal   Stn1 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYD2-F1-model_v2 AlphaFold Q6AYD2 1-408 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690979
Promoter ID:EPDNEW_R1503
Type:initiation region
Name:Stn1_1
Description:STN1, CST complex subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01267,315,628 - 267,315,688EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305637 AgrOrtholog
BioCyc Gene G2FUF-55477 BioCyc
Ensembl Genes ENSRNOG00000020376 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000130024 ENTREZGENE
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot
  1.10.10.980 UniProtKB/Swiss-Prot
  2.40.50.140 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7124109 IMAGE-MGC_LOAD
InterPro CST_STN1_C UniProtKB/Swiss-Prot
  CST_Stn1_N_sf UniProtKB/Swiss-Prot
  NA-bd_OB-fold UniProtKB/Swiss-Prot
  RFA2-like UniProtKB/Swiss-Prot
  Stn1 UniProtKB/Swiss-Prot
  Stn1_N UniProtKB/Swiss-Prot
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report rno:294025 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94071 IMAGE-MGC_LOAD
NCBI Gene 294025 ENTREZGENE
PANTHER CST COMPLEX SUBUNIT STN1 UniProtKB/Swiss-Prot
  PTHR13989 UniProtKB/Swiss-Prot
Pfam Stn1 UniProtKB/Swiss-Prot
  STN1_2 UniProtKB/Swiss-Prot
PhenoGen Stn1 PhenoGen
PIRSF UCP036950 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000020376 RatGTEx
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot
  SSF50249 UniProtKB/Swiss-Prot
UniProt A0A0H2UHR9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A2S8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LHZ8_RAT UniProtKB/TrEMBL
  A0ABK0LU09_RAT UniProtKB/TrEMBL
  A6JHQ6 ENTREZGENE, UniProtKB/TrEMBL
  Q6AYD2 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 Stn1  STN1 subunit of CST complex  Stn1  STN1, CST complex subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-01-17 Stn1  STN1, CST complex subunit  Obfc1  oligonucleotide/oligosaccharide-binding fold containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Obfc1  oligonucleotide/oligosaccharide-binding fold containing 1  Obfc1_predicted  oligonucleotide/oligosaccharide-binding fold containing 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Obfc1_predicted  oligonucleotide/oligosaccharide-binding fold containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED