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Gene: Ccdc30 (coiled-coil domain containing 30) Rattus norvegicus

Analyze

Symbol:

Ccdc30

Name:

coiled-coil domain containing 30

RGD ID:

1305604

Description:

Orthologous to human CCDC30 (coiled-coil domain containing 30); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

coiled-coil domain-containing protein 30; coiled-coil domain-containing protein 30-like; LOC102552311; LOC362580; LOC500539; RGD1305604; RGD1565923; similar to CG2919-PA; similar to hypothetical protein FLJ20972

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCDC30 (coiled-coil domain containing 30)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Ccdc30 (coiled-coil domain containing 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccdc30 (coiled-coil domain containing 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCDC30 (coiled-coil domain containing 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCDC30 (coiled-coil domain containing 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccdc30 (coiled-coil domain containing 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCDC30 (coiled-coil domain containing 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCDC30 (coiled-coil domain containing 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccdc30 (coiled-coil domain containing 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ccdc30 (coiled-coil domain containing 30)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ccdc30 (coiled-coil domain containing 30)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CCDC30 (coiled-coil domain containing 30)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccdc30 (coiled-coil domain containing 30)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccdc30 (coiled-coil domain containing 30)	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-264d12.5	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ccdc30	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccdc30	Alliance	DIOPT (OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	138,212,067 - 138,305,465 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	138,211,227 - 138,304,992 (-)	Ensembl				GRCr8
mRatBN7.2	5	132,926,767 - 133,019,635 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	132,926,615 - 133,019,659 (-)	Ensembl				mRatBN7.2
Rnor_6.0	5	138,364,211 - 138,462,922 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	138,364,167 - 138,462,864 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	142,180,502 - 142,261,904 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	139,915,083 - 139,956,693 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	131,452,082 - 131,543,521 (-)	NCBI		Celera
RGSC_v3.1	5	139,881,298 - 139,961,919 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amitrole (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

fenvalerate (EXP)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

methapyrilene (ISO)

methimazole (EXP)

monosodium L-glutamate (ISO)

okadaic acid (ISO)

ozone (ISO)

phenobarbital (ISO)

potassium dichromate (ISO)

propanal (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tetraphene (ISO)

theophylline (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:23376485

Genomics

Comparative Map Data

Ccdc30
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	138,212,067 - 138,305,465 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	138,211,227 - 138,304,992 (-)	Ensembl				GRCr8
mRatBN7.2	5	132,926,767 - 133,019,635 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	132,926,615 - 133,019,659 (-)	Ensembl				mRatBN7.2
Rnor_6.0	5	138,364,211 - 138,462,922 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	138,364,167 - 138,462,864 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	142,180,502 - 142,261,904 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	139,915,083 - 139,956,693 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	131,452,082 - 131,543,521 (-)	NCBI		Celera
RGSC_v3.1	5	139,881,298 - 139,961,919 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

CCDC30
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	42,456,107 - 42,657,190 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	42,463,221 - 42,657,190 (+)	Ensembl			hg38	GRCh38
GRCh37	1	42,921,778 - 43,122,861 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	42,772,129 - 42,892,444 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	41,282,491 - 41,402,263 (+)	NCBI		Celera
Cytogenetic Map	1	p34.2	NCBI
HuRef	1	41,120,628 - 41,240,505 (+)	NCBI		HuRef
CHM1_1	1	43,117,389 - 43,237,193 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	42,326,469 - 42,527,685 (+)	NCBI		T2T-CHM13v2.0

Ccdc30
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	119,179,665 - 119,272,718 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	119,179,663 - 119,272,718 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	119,322,468 - 119,415,521 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	119,322,466 - 119,415,521 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	118,996,444 - 119,088,126 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	118,912,679 - 118,916,771 (+)	NCBI		MGSCv36	mm8
MGSCv36	4	117,315,735 - 117,320,340 (+)	NCBI		MGSCv36	mm8
Celera	4	118,051,685 - 118,146,709 (-)	NCBI		Celera
Cytogenetic Map	4	D2.1	NCBI
cM Map	4	55.35	NCBI

Ccdc30
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955537	2,135,315 - 2,207,661 (+)	Ensembl
ChiLan1.0	NW_004955537	2,086,971 - 2,207,825 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC30
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	184,154,775 - 184,331,238 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	183,296,321 - 183,472,876 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	41,782,720 - 41,954,106 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	43,212,384 - 43,332,018 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	43,200,640 - 43,332,018 (+)	Ensembl			panPan2	panpan1.1

CCDC30
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	691,771 - 759,443 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	691,780 - 810,110 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	946,521 - 1,014,282 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	773,201 - 840,992 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	772,310 - 891,900 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	682,531 - 750,326 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	743,998 - 811,811 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	759,161 - 826,961 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	58,085,185 - 58,177,461 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936474	23,922,796 - 24,002,316 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC30
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	168,765,538 - 168,870,299 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	168,765,537 - 168,858,417 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	156,246,573 - 156,329,864 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC30
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	90,278,923 - 90,473,093 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	90,467,656 - 90,473,704 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	26,442,300 - 26,631,484 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc30
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624892	1,796,921 - 1,914,824 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccdc30
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	37,563,080 - 37,639,090 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ccdc30
1310 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	144
Count of miRNA genes:	124
Interacting mature miRNAs:	133
Transcripts:	ENSRNOT00000011325, ENSRNOT00000071163, ENSRNOT00000073705
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
2303586	Gluco52	Glucose level QTL 52	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	100826632	145826632	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	130678987	145274255	Rat
7365049	Bp359	Blood pressure QTL 359			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133308734	140009902	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	134369218	156289444	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	98972960	143972960	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
2303618	Vencon1	Ventilatory control QTL 1	3.8		respiration trait (VT:0001943)	oxygen consumption (CMO:0002169)	5	100826632	145826632	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	94034903	139034903	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	125969677	156302135	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Markers in Region

D5Rat31

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	133,011,384 - 133,011,550 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	138,454,074 - 138,454,239	NCBI	Rnor6.0
Rnor_5.0	5	142,265,201 - 142,265,366	UniSTS	Rnor5.0
RGSC_v3.4	5	139,996,029 - 139,996,194	UniSTS	RGSC3.4
RGSC_v3.4	5	139,996,028 - 139,996,194	RGD	RGSC3.4
Celera	5	131,535,894 - 131,536,059	UniSTS
RGSC_v3.1	5	140,001,255 - 140,001,420	RGD
RH 3.4 Map	5	868.1	RGD
RH 3.4 Map	5	868.1	UniSTS
RH 2.0 Map	5	860.3	RGD
SHRSP x BN Map	5	70.6499	RGD
FHH x ACI Map	5	70.92	RGD
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	80	59	6	344	180	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001073839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001843740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005504969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010066618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010066619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010066620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011325 ⟹ ENSRNOP00000011325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	138,212,067 - 138,304,992 (-)	Ensembl
mRatBN7.2 Ensembl	5	132,926,615 - 133,019,659 (-)	Ensembl
Rnor_6.0 Ensembl	5	138,364,167 - 138,462,864 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114851 ⟹ ENSRNOP00000093478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	138,251,584 - 138,265,138 (-)	Ensembl
mRatBN7.2 Ensembl	5	132,966,304 - 132,979,846 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116887 ⟹ ENSRNOP00000093900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	138,212,053 - 138,267,590 (-)	Ensembl
mRatBN7.2 Ensembl	5	132,926,615 - 132,982,664 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163011 ⟹ ENSRNOP00000102828

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	138,211,227 - 138,304,747 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173376 ⟹ ENSRNOP00000107252

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	138,212,037 - 138,304,747 (-)	Ensembl

RefSeq Acc Id:

XM_008764108 ⟹ XP_008762330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,305,465 (-)	NCBI
mRatBN7.2	5	132,926,767 - 133,019,593 (-)	NCBI
Rnor_6.0	5	138,364,211 - 138,462,922 (-)	NCBI

Sequence:

show sequence

CAACAGTCATCACAGGAAGAACGGCCCAGGGCACCAAAAGCGTGCACAGTCTCCAAGGCTCCCG
CCGGGTTGCGCCTGCGCGTCCCCTGCTGAGCGCGGTTGCCATGACAGCGGCTGGGCCGCTGGAG
CTGAGCGACCCCTGCACCTTCTGCAGGCTCTCAGGGAAATCCCACCTCAACCGCAGGGCGGACC
TGCTCTTCCCGTGGTGCACATTCCAGATCTCTTCGGATCCCCGGTGAGCTCCTTCATGTGGGCT
GGTGGGCTTCGGCGTGCTCGTGACTGTCCTCGAAGGTCCCGACAGCCACAAAGGCCCCGGAGAC
ACCGTTGTGTCCTGGCCGTGGGGCCGAGGGAAAGGACTGTCGTGCTAGCTTCGTCCAGCGCAAC
CTTGCATCCGGATGAAGCTCTGCAGGCGCGGTGGGACACCACGCGTCTGAGGTCATCAAAAGCC
CAAATAAGGGAAGCCAGCCAAATGTGTCAAGAAGGCTTGTCCAGGCTAGCTCTGAGCAGCCCCA
GGAAACAGACTGCATGCTCACTGGGTGAAAGGAGGACACTAACAGAGGCCTTGGAACCTGTGGA
CTGCACTCTGGAGTATGGAAGACATCCAAGCAGTAGCCTGCAGAAAGAATTTCCCCAGCATCAG
GGTGACGACCAGAATAAAGATGCAGTGCCTCAGGACCGCCTCCTGAGGGAAGTGGCATGCAGAG
CACAGAAACTGGAGGCCTTGCTGGAGGAGATCCACAGGGGAGCCCAGGAGCCACGAGAGGAGGA
GAGAGAGCAGAGAAAGTTAGGTGATGCTCTTGAGAATGCCCGACTGGAAATTGAAAAACTGAAA
GATAATCTGACAAAATTGAAAGAAAGTGGTACAACTGACCTACAGAAAGCAAAGGAACACAACC
AGAGGCTGGACGAGGAAATTCTGGCATTAAGAAACCGGGTTCGATCACTTGACTCTGAGAAAAA
GGTGCTTGGAGAAATGTATCTAACATCTGGAGAGAAAGCAAGCTACCAGCATCAAGGGGAACTG
CGGGAACTGCGGCAGAACCTGCACCGCCTGCAGATCCTGAGCAACTCGGCTGAGAAGGAGCTGC
GGTACGAGCGGGGCCGGAGCCTAGACTTGAAACAACACAACAGTTTGCTCCAGGAGGAGAACCT
CAAGATCAAAATTGAACTCAAGCAGGCCCAGGAGAAGTTGCTGGACAACGCCAGGATGCACTCC
TCCCTCATGGCAGAGTGGAAGCTCTGTCAGCAGAAAGTCAAGGAGCTGGAGTTAGAAGGACTTA
GGCAGACGCAGAGCATTAAGTCCCAGCAGGGCCTACAGGAAAAGCTGGCTCGGGAGAAATCGAA
AACAGCGGAAGCACAGGAAAAGATTTTGGACCTGCAGCAGAAACTAGACCACGCTCGACAAGTC
TGCCTTTCAGATGTTTGCATTTTGCGGAGGAAGCAGCTAGAGGAAGAGATCAAGGAAGCAAAGA
GCACAGAGGCCAGGCTTAAGCAGCAGTGCCAGGAGGAGCAGCAGAGGAGGATTCTTCTAGACCA
GGATGTAAATGAGCTCCAGAGACAAGTGAGAACCTTGCAGGATAAGGAGAGCCAACAGGAAGCA
GCCAATTCCCAGCAACAAGAGACTCTACGCAAACAACTGGAAATCGAGAGAAGAAAGTGTGAAG
AGTATGTCAAGAGCAACCAGGAATTGTCAGAGAAACTCGCTAGCTTGCAGCAAGAAAAGGAAGC
TCTATGGCATGAACACGGGCAGTTTTTGGAGCAACTGGGCGATCACGTGAGAAACTACAAAGAC
AAACACCACTGCCACAAAGCCAAGCTCCAAAAGGTCAAGGACCGTCTGACTCTCGAGTTAGAGA
TACGGAATAAGAGGATTAAAGAACTTGAAGATGACACTGGGAAACTGCAACAGAAAATTGAAAT
GGAGAAAGTGTTCCAGGGCCAGATCATGACCCAAAATGACATCCTCCTCCTGGAAAAGAGGAAG
CTTCTAGAACAAGTCACCAACCAAGAAGAACTGATTTGCAGCAACAAGTCCACAATATCTGCAT
TCCAGAGCAAGACATTTTTACTGGATAAAGAAAACCAGCAGTTGCAGGAGAACTGCCTCCGGCT
AATGCAGCAAATTAGCCTCTTGGAGCAAATTATAAGAAGCATCCAGATCCGCAGAGAAGAGGAA
ACAGTAATTACTGACAACGCTNNGTTTGAAATACTCAAAAAGATACTACCGTTACAAAACTCCA
GTTTCTCAGGGACAGGTTTGGTATTGCCAGCTAAGAATCCCAAGGAGGAGACTGAGCTGCTTAA
GTCGGAGGGAGCAACAGTAATGGCCAAGTCGCCTGAGCCTCCTTCACAGTCACAGGATTCAGAA
AATGGATACATCAATGTGACTTCTCTAAAGGAGACATACCACACACAAGGGGACCGGAAGCCAA
AACTATGACCTCACGGGATCTGAAACAATACTAATCATGCCTACTAAGTCAGAGCCTGGGTACA
GAGGTGCAAACTGAGCTGGAGACGTCTCACAGAACACCCTGGACATCAACAAGGAGTCTTCAAA
ATCGCTTTTTAAACAGTCATTAAAATTTTTCAAAAATGGAA

hide sequence

RefSeq Acc Id:

XM_039111203 ⟹ XP_038967131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,273,657 (-)	NCBI
mRatBN7.2	5	132,926,767 - 132,982,455 (-)	NCBI

RefSeq Acc Id:

XM_039111205 ⟹ XP_038967133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,273,657 (-)	NCBI
mRatBN7.2	5	132,926,767 - 132,982,457 (-)	NCBI

RefSeq Acc Id:

XM_039111206 ⟹ XP_038967134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,273,657 (-)	NCBI
mRatBN7.2	5	132,926,767 - 132,982,458 (-)	NCBI

RefSeq Acc Id:

XM_039111207 ⟹ XP_038967135

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,304,996 (-)	NCBI
mRatBN7.2	5	132,926,767 - 133,019,635 (-)	NCBI

RefSeq Acc Id:

XM_039111208 ⟹ XP_038967136

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,305,465 (-)	NCBI
mRatBN7.2	5	132,926,767 - 133,019,436 (-)	NCBI

RefSeq Acc Id:

XM_039111210 ⟹ XP_038967138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,299,517 (-)	NCBI
mRatBN7.2	5	132,926,767 - 133,014,135 (-)	NCBI

RefSeq Acc Id:

XM_039111211 ⟹ XP_038967139

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,215,374 - 138,273,657 (-)	NCBI
mRatBN7.2	5	132,932,632 - 132,982,454 (-)	NCBI

RefSeq Acc Id:

XM_039111212 ⟹ XP_038967140

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,215,374 - 138,273,657 (-)	NCBI
mRatBN7.2	5	132,930,320 - 132,982,454 (-)	NCBI

RefSeq Acc Id:

XM_039111213 ⟹ XP_038967141

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,305,465 (-)	NCBI
mRatBN7.2	5	132,926,767 - 133,019,592 (-)	NCBI

RefSeq Acc Id:

XM_039111215 ⟹ XP_038967143

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,273,657 (-)	NCBI
mRatBN7.2	5	132,926,767 - 132,982,455 (-)	NCBI

RefSeq Acc Id:

XM_039111216 ⟹ XP_038967144

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,273,657 (-)	NCBI
mRatBN7.2	5	132,926,767 - 132,983,083 (-)	NCBI

RefSeq Acc Id:

XM_039111218 ⟹ XP_038967146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,221,404 - 138,273,657 (-)	NCBI
mRatBN7.2	5	132,936,055 - 132,982,450 (-)	NCBI

RefSeq Acc Id:

XM_039111219 ⟹ XP_038967147

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,273,657 (-)	NCBI
mRatBN7.2	5	132,926,767 - 132,983,105 (-)	NCBI

RefSeq Acc Id:

XM_063288605 ⟹ XP_063144675

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,273,657 (-)	NCBI

RefSeq Acc Id:

XM_063288606 ⟹ XP_063144676

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,304,992 (-)	NCBI

RefSeq Acc Id:

XM_063288607 ⟹ XP_063144677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,299,401 (-)	NCBI

RefSeq Acc Id:

XM_063288608 ⟹ XP_063144678

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,215,963 - 138,273,657 (-)	NCBI

RefSeq Acc Id:

XM_063288609 ⟹ XP_063144679

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,304,995 (-)	NCBI

RefSeq Acc Id:

XM_063288610 ⟹ XP_063144680

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,216,404 - 138,273,657 (-)	NCBI

RefSeq Acc Id:

XM_063288611 ⟹ XP_063144681

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,273,657 (-)	NCBI

RefSeq Acc Id:

XM_063288612 ⟹ XP_063144682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,305,465 (-)	NCBI

RefSeq Acc Id:

XM_063288613 ⟹ XP_063144683

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,304,996 (-)	NCBI

RefSeq Acc Id:

XM_063288614 ⟹ XP_063144684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,215,374 - 138,273,657 (-)	NCBI

RefSeq Acc Id:

XM_063288615 ⟹ XP_063144685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,214,227 - 138,273,657 (-)	NCBI

RefSeq Acc Id:

XM_063288616 ⟹ XP_063144686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,215,374 - 138,304,998 (-)	NCBI

RefSeq Acc Id:

XM_063288617 ⟹ XP_063144687

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,067 - 138,288,606 (-)	NCBI

RefSeq Acc Id:

XR_005504969

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,345 - 138,273,657 (-)	NCBI
mRatBN7.2	5	132,927,045 - 132,982,453 (-)	NCBI

RefSeq Acc Id:

XR_010066618

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,212,345 - 138,273,657 (-)	NCBI

RefSeq Acc Id:

XR_010066619

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,221,404 - 138,273,657 (-)	NCBI

RefSeq Acc Id:

XR_010066620

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	138,221,404 - 138,273,657 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418113	(Get FASTA)	NCBI Sequence Viewer
	NP_001418114	(Get FASTA)	NCBI Sequence Viewer
	NP_001418115	(Get FASTA)	NCBI Sequence Viewer
	NP_001418116	(Get FASTA)	NCBI Sequence Viewer
	NP_001418117	(Get FASTA)	NCBI Sequence Viewer
	NP_001418118	(Get FASTA)	NCBI Sequence Viewer
	NP_001418119	(Get FASTA)	NCBI Sequence Viewer
	NP_001418120	(Get FASTA)	NCBI Sequence Viewer
	NP_001418121	(Get FASTA)	NCBI Sequence Viewer
	NP_001418122	(Get FASTA)	NCBI Sequence Viewer
	NP_001418123	(Get FASTA)	NCBI Sequence Viewer
	NP_001418124	(Get FASTA)	NCBI Sequence Viewer
	NP_001418125	(Get FASTA)	NCBI Sequence Viewer
	NP_001418126	(Get FASTA)	NCBI Sequence Viewer
	NP_001418127	(Get FASTA)	NCBI Sequence Viewer
	NP_001418128	(Get FASTA)	NCBI Sequence Viewer
	NP_001418129	(Get FASTA)	NCBI Sequence Viewer
	NP_001418130	(Get FASTA)	NCBI Sequence Viewer
	NP_001418131	(Get FASTA)	NCBI Sequence Viewer
	NP_001418132	(Get FASTA)	NCBI Sequence Viewer
	NP_001418133	(Get FASTA)	NCBI Sequence Viewer
	NP_001418134	(Get FASTA)	NCBI Sequence Viewer
	XP_008762330	(Get FASTA)	NCBI Sequence Viewer
	XP_038967131	(Get FASTA)	NCBI Sequence Viewer
	XP_038967133	(Get FASTA)	NCBI Sequence Viewer
	XP_038967134	(Get FASTA)	NCBI Sequence Viewer
	XP_038967135	(Get FASTA)	NCBI Sequence Viewer
	XP_038967136	(Get FASTA)	NCBI Sequence Viewer
	XP_038967138	(Get FASTA)	NCBI Sequence Viewer
	XP_038967139	(Get FASTA)	NCBI Sequence Viewer
	XP_038967140	(Get FASTA)	NCBI Sequence Viewer
	XP_038967141	(Get FASTA)	NCBI Sequence Viewer
	XP_038967143	(Get FASTA)	NCBI Sequence Viewer
	XP_038967144	(Get FASTA)	NCBI Sequence Viewer
	XP_038967146	(Get FASTA)	NCBI Sequence Viewer
	XP_038967147	(Get FASTA)	NCBI Sequence Viewer
	XP_063144675	(Get FASTA)	NCBI Sequence Viewer
	XP_063144676	(Get FASTA)	NCBI Sequence Viewer
	XP_063144677	(Get FASTA)	NCBI Sequence Viewer
	XP_063144678	(Get FASTA)	NCBI Sequence Viewer
	XP_063144679	(Get FASTA)	NCBI Sequence Viewer
	XP_063144680	(Get FASTA)	NCBI Sequence Viewer
	XP_063144681	(Get FASTA)	NCBI Sequence Viewer
	XP_063144682	(Get FASTA)	NCBI Sequence Viewer
	XP_063144683	(Get FASTA)	NCBI Sequence Viewer
	XP_063144684	(Get FASTA)	NCBI Sequence Viewer
	XP_063144685	(Get FASTA)	NCBI Sequence Viewer
	XP_063144686	(Get FASTA)	NCBI Sequence Viewer
	XP_063144687	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL90114	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011325
	ENSRNOP00000011325.8
	ENSRNOP00000093478.1
	ENSRNOP00000093900
	ENSRNOP00000093900.1
	ENSRNOP00000102828
	ENSRNOP00000102828.1
	ENSRNOP00000107252
	ENSRNOP00000107252.1

RefSeq Acc Id:

XP_008762330 ⟸ XM_008764108

- Peptide Label:

isoform X4

- Sequence:

show sequence

MWAGGLRRARDCPRRSRQPQRPRRHRCVLAVGPRERTVVLASSSATLHPDEALQARWDTTRLRS
SKAQIREASQMCQEGLSRLALSSPRKQTACSLGERRTLTEALEPVDCTLEYGRHPSSSLQKEFP
QHQGDDQNKDAVPQDRLLREVACRAQKLEALLEEIHRGAQEPREEEREQRKLGDALENARLEIE
KLKDNLTKLKESGTTDLQKAKEHNQRLDEEILALRNRVRSLDSEKKVLGEMYLTSGEKASYQHQ
GELRELRQNLHRLQILSNSAEKELRYERGRSLDLKQHNSLLQEENLKIKIELKQAQEKLLDNAR
MHSSLMAEWKLCQQKVKELELEGLRQTQSIKSQQGLQEKLAREKSKTAEAQEKILDLQQKLDHA
RQVCLSDVCILRRKQLEEEIKEAKSTEARLKQQCQEEQQRRILLDQDVNELQRQVRTLQDKESQ
QEAANSQQQETLRKQLEIERRKCEEYVKSNQELSEKLASLQQEKEALWHEHGQFLEQLGDHVRN
YKDKHHCHKAKLQKVKDRLTLELEIRNKRIKELEDDTGKLQQKIEMEKVFQGQIMTQNDILLLE
KRKLLEQVTNQEELICSNKSTISAFQSKTFLLDKENQQLQENCLRLMQQISLLEQIIRSIQIRR
EEETVITDNAXFEILKKILPLQNSSFSGTGLVLPAKNPKEETELLKSEGATVMAKSPEPPSQSQ
DSENGYINVTSLKETYHTQGDRKPKL

hide sequence

Ensembl Acc Id:

ENSRNOP00000011325 ⟸ ENSRNOT00000011325

RefSeq Acc Id:	XP_038967135 ⟸ XM_039111207
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038967141 ⟸ XM_039111213
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038967136 ⟸ XM_039111208
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038967138 ⟸ XM_039111210
- Peptide Label:	isoform X4
- UniProtKB:	D4A7I7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038967147 ⟸ XM_039111219
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_038967144 ⟸ XM_039111216
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038967134 ⟸ XM_039111206
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038967133 ⟸ XM_039111205
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038967143 ⟸ XM_039111215
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038967131 ⟸ XM_039111203
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038967140 ⟸ XM_039111212
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038967139 ⟸ XM_039111211
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038967146 ⟸ XM_039111218
- Peptide Label:	isoform X15
- UniProtKB:	A6JZN6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000093478 ⟸ ENSRNOT00000114851

Ensembl Acc Id:

ENSRNOP00000093900 ⟸ ENSRNOT00000116887

RefSeq Acc Id:	XP_063144682 ⟸ XM_063288612
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063144683 ⟸ XM_063288613
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063144679 ⟸ XM_063288609
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063144676 ⟸ XM_063288606
- Peptide Label:	isoform X4
- UniProtKB:	D4A7I7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144677 ⟸ XM_063288607
- Peptide Label:	isoform X4
- UniProtKB:	D4A7I7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144687 ⟸ XM_063288617
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063144681 ⟸ XM_063288611
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063144675 ⟸ XM_063288605
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063144685 ⟸ XM_063288615
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063144686 ⟸ XM_063288616
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063144684 ⟸ XM_063288614
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063144678 ⟸ XM_063288608
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063144680 ⟸ XM_063288610
- Peptide Label:	isoform X9

Ensembl Acc Id:

ENSRNOP00000107252 ⟸ ENSRNOT00000173376

Ensembl Acc Id:

ENSRNOP00000102828 ⟸ ENSRNOT00000163011

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A7I7-F1-model_v2	AlphaFold	D4A7I7	1-664	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305604	AgrOrtholog
BioCyc Gene	G2FUF-40089	BioCyc
Ensembl Genes	ENSRNOG00000008560	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011325	ENTREZGENE
	ENSRNOT00000011325.9	UniProtKB/TrEMBL
	ENSRNOT00000114851.2	UniProtKB/TrEMBL
	ENSRNOT00000116887	ENTREZGENE
	ENSRNOT00000116887.2	UniProtKB/TrEMBL
	ENSRNOT00000163011	ENTREZGENE
	ENSRNOT00000163011.1	UniProtKB/TrEMBL
	ENSRNOT00000173376	ENTREZGENE
	ENSRNOT00000173376.1	UniProtKB/TrEMBL
InterPro	CCD-Prefoldin_beta-like	UniProtKB/TrEMBL
	DUF4686	UniProtKB/TrEMBL
NCBI Gene	362580	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 30	UniProtKB/TrEMBL
	COILED-COIL DOMAIN-CONTAINING PROTEIN 30	UniProtKB/TrEMBL
Pfam	DUF4686	UniProtKB/TrEMBL
PhenoGen	Ccdc30	PhenoGen
RatGTEx	ENSRNOG00000008560	RatGTEx
UniProt	A0A8I6AIV2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AKX9	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L291_RAT	UniProtKB/TrEMBL
	A0ABK0LYT8_RAT	UniProtKB/TrEMBL
	A6JZN6	ENTREZGENE, UniProtKB/TrEMBL
	D4A7I7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Ccdc30	coiled-coil domain containing 30	LOC102552311	coiled-coil domain-containing protein 30-like	Data merged from RGD:7712624	737654	PROVISIONAL
2015-08-13	Ccdc30	coiled-coil domain containing 30	RGD1565923	similar to hypothetical protein FLJ20972	Data merged from RGD:1565923	737654	PROVISIONAL
2013-12-18	LOC102552311	coiled-coil domain-containing protein 30-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-04-23	Ccdc30	coiled-coil domain containing 30	RGD1305604	similar to CG2919-PA	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1305604	similar to CG2919-PA	RGD1305604_predicted	similar to CG2919-PA (predicted)	'predicted' is removed	2292626	APPROVED
2008-04-30	RGD1565923	similar to hypothetical protein FLJ20972	RGD1565923_predicted	similar to hypothetical protein FLJ20972 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1565923_predicted	similar to hypothetical protein FLJ20972 (predicted)	LOC500539	similar to hypothetical protein FLJ20972	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500539	similar to hypothetical protein FLJ20972			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1305604_predicted	similar to CG2919-PA (predicted)	LOC362580_predicted		Symbol and Name status set to approved	1331353	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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