Hspa12a (heat shock protein family A (Hsp70) member 12A) - Rat Genome Database

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Gene: Hspa12a (heat shock protein family A (Hsp70) member 12A) Rattus norvegicus
Analyze
Symbol: Hspa12a
Name: heat shock protein family A (Hsp70) member 12A
RGD ID: 1305531
Description: Predicted to enable ATP binding activity. Predicted to act upstream of or within several processes, including import into nucleus; liver development; and macrophage activation. Predicted to be located in cytoplasm and nucleus. Orthologous to human HSPA12A (heat shock protein family A (Hsp70) member 12A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aldehydo-D-glucose.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: heat shock 70 kDa protein 12A; heat shock 70kDa protein 12A; heat shock protein 12A; LOC307997
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81267,921,780 - 268,083,171 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1267,921,782 - 268,082,794 (-)EnsemblGRCr8
mRatBN7.21257,935,642 - 258,096,602 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1257,935,644 - 258,096,846 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1266,140,149 - 266,211,477 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01272,846,146 - 272,917,484 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01265,488,697 - 265,559,829 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01279,946,809 - 280,104,366 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1279,946,811 - 280,015,358 (-)Ensemblrn6Rnor6.0
Rnor_5.01287,309,700 - 287,467,166 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41265,305,145 - 265,373,007 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1253,591,382 - 253,664,756 (-)NCBICelera
RGSC_v3.11265,519,697 - 265,583,439 (-)NCBI
Cytogenetic Map1q55NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (ISO)
bupivacaine  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
dibutyl phthalate  (EXP)
diethyl phthalate  (EXP)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
glucose  (EXP)
glyphosate  (EXP)
hexadecanoic acid  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
lithium chloride  (ISO)
mercury dichloride  (EXP)
methapyrilene  (ISO)
methoxychlor  (EXP)
nickel sulfate  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctanoic acid  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver(1+) nitrate  (ISO)
sodium arsenite  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19056867   PMID:22871113   PMID:23376485  


Genomics

Comparative Map Data
Hspa12a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81267,921,780 - 268,083,171 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1267,921,782 - 268,082,794 (-)EnsemblGRCr8
mRatBN7.21257,935,642 - 258,096,602 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1257,935,644 - 258,096,846 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1266,140,149 - 266,211,477 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01272,846,146 - 272,917,484 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01265,488,697 - 265,559,829 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01279,946,809 - 280,104,366 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1279,946,811 - 280,015,358 (-)Ensemblrn6Rnor6.0
Rnor_5.01287,309,700 - 287,467,166 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41265,305,145 - 265,373,007 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1253,591,382 - 253,664,756 (-)NCBICelera
RGSC_v3.11265,519,697 - 265,583,439 (-)NCBI
Cytogenetic Map1q55NCBI
HSPA12A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810116,671,192 - 116,850,747 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10116,671,192 - 116,850,251 (-)Ensemblhg38GRCh38
GRCh3710118,430,703 - 118,609,233 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610118,420,693 - 118,492,075 (-)NCBIBuild 36Build 36hg18NCBI36
Celera10112,160,118 - 112,231,561 (-)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10112,058,871 - 112,130,303 (-)NCBIHuRef
CHM1_110118,713,815 - 118,785,205 (-)NCBICHM1_1
T2T-CHM13v2.010117,565,518 - 117,745,047 (-)NCBIT2T-CHM13v2.0
Hspa12a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391958,784,182 - 58,932,104 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1958,784,182 - 58,932,086 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381958,795,750 - 58,943,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1958,795,750 - 58,943,654 (-)Ensemblmm10GRCm38
MGSCv371958,870,241 - 58,935,474 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361958,850,544 - 58,914,195 (-)NCBIMGSCv36mm8
Celera1960,992,811 - 61,058,563 (-)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1954.51NCBI
Hspa12a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543121,468,475 - 21,611,362 (-)Ensembl
ChiLan1.0NW_00495543121,464,578 - 21,625,979 (-)NCBIChiLan1.0ChiLan1.0
HSPA12A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28128,540,409 - 128,725,072 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110128,545,748 - 128,728,230 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010113,253,070 - 113,432,083 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110116,683,985 - 116,861,605 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10116,683,985 - 116,861,396 (-)EnsemblpanPan2panpan1.1
HSPA12A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12827,232,167 - 27,392,876 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2827,232,663 - 27,392,977 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2827,382,582 - 27,542,914 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02827,768,761 - 27,929,306 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2827,768,766 - 27,929,325 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12827,323,230 - 27,483,965 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02827,343,514 - 27,504,042 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02827,531,609 - 27,692,051 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hspa12a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721318,800,760 - 18,949,097 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364866,612,170 - 6,760,608 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364866,612,201 - 6,760,453 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSPA12A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14126,851,903 - 127,037,257 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.114126,851,898 - 127,037,273 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214138,170,744 - 138,346,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HSPA12A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19109,479,398 - 109,661,166 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9109,479,396 - 109,661,350 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604870,734,650 - 70,916,380 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hspa12a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473729,758,011 - 29,914,134 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473729,757,827 - 29,917,212 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Hspa12a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1257,250,178 - 57,320,053 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:603
Count of miRNA genes:267
Interacting mature miRNAs:359
Transcripts:ENSRNOT00000024548
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1263946994269633915Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1224633915269633915Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1232312773270518180Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1226175591270518180Rat
1578775Iddm21Insulin dependent diabetes mellitus QTL 214.13blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1245782829270518180Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1248619887269633915Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631836Stl31Serum triglyceride level QTL 314.645e-06blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1247133834270518180Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1600390Niddm64Non-insulin dependent diabetes mellitus QTL 640.003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1257624997270518180Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1237995023269633915Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1233480549270108840Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1234540191270518180Rat
7387289Uae45Urinary albumin excretion QTL 452.860.0021urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1233204160270518180Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1233480549270108840Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
1598839Rf56Renal function QTL 56renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1255849111270518180Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1241569529269633915Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1243953669270518180Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1225108840270108840Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1226175591270518180Rat
631669Iddm9Insulin dependent diabetes mellitus QTL 92.80.039blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1233349180270518180Rat
1598821Rf55Renal function QTL 556.3renal blood flow trait (VT:2000006)ratio of change in renal blood flow to change in renal perfusion pressure (CMO:0001239)1228174566270518180Rat

Markers in Region
D1Rat89  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21257,976,324 - 257,976,495 (+)MAPPERmRatBN7.2
Rnor_6.01279,985,909 - 279,986,079NCBIRnor6.0
Rnor_5.01287,349,660 - 287,349,830UniSTSRnor5.0
RGSC_v3.41265,343,371 - 265,343,617RGDRGSC3.4
RGSC_v3.41265,343,447 - 265,343,617UniSTSRGSC3.4
Celera1253,635,242 - 253,635,412UniSTS
RGSC_v3.11265,554,492 - 265,554,662RGD
RH 3.4 Map11692.3RGD
RH 3.4 Map11692.3UniSTS
RH 2.0 Map11311.6999RGD
SHRSP x BN Map1145.88RGD
Cytogenetic Map1q55UniSTS
RH130606  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21257,935,715 - 257,935,903 (+)MAPPERmRatBN7.2
Rnor_6.01279,946,883 - 279,947,070NCBIRnor6.0
Rnor_5.01287,309,774 - 287,309,961UniSTSRnor5.0
RGSC_v3.41265,305,217 - 265,305,404UniSTSRGSC3.4
Celera1253,591,454 - 253,591,641UniSTS
Cytogenetic Map1q55UniSTS
BE113878  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21257,967,434 - 257,967,642 (+)MAPPERmRatBN7.2
Rnor_6.01279,978,320 - 279,978,527NCBIRnor6.0
Rnor_5.01287,341,315 - 287,341,522UniSTSRnor5.0
RGSC_v3.41265,336,363 - 265,336,570UniSTSRGSC3.4
Celera1253,626,138 - 253,626,345UniSTS
RH 3.4 Map11692.6UniSTS
Cytogenetic Map1q55UniSTS
AI840429  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21257,935,998 - 257,936,091 (+)MAPPERmRatBN7.2
Rnor_6.01279,947,166 - 279,947,258NCBIRnor6.0
Rnor_5.01287,310,057 - 287,310,149UniSTSRnor5.0
RGSC_v3.41265,305,500 - 265,305,592UniSTSRGSC3.4
Celera1253,591,737 - 253,591,829UniSTS
Cytogenetic Map1q55UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 70 59 6 334 170 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000024548   ⟹   ENSRNOP00000024548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1267,921,782 - 267,992,021 (-)Ensembl
mRatBN7.2 Ensembl1257,935,644 - 258,005,889 (-)Ensembl
Rnor_6.0 Ensembl1279,946,811 - 280,015,358 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100455   ⟹   ENSRNOP00000090050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1267,921,782 - 268,071,526 (-)Ensembl
mRatBN7.2 Ensembl1257,935,644 - 257,969,026 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109008   ⟹   ENSRNOP00000086907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1267,921,782 - 268,082,794 (-)Ensembl
mRatBN7.2 Ensembl1257,935,644 - 258,096,846 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000173367   ⟹   ENSRNOP00000103522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1267,921,782 - 267,992,021 (-)Ensembl
RefSeq Acc Id: NM_001107445   ⟹   NP_001100915
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81267,921,782 - 267,992,021 (-)NCBI
mRatBN7.21257,935,644 - 258,005,889 (-)NCBI
Rnor_6.01279,946,811 - 280,015,358 (-)NCBI
Rnor_5.01287,309,700 - 287,467,166 (-)NCBI
RGSC_v3.41265,305,145 - 265,373,007 (-)RGD
Celera1253,591,382 - 253,664,756 (-)RGD
Sequence:
RefSeq Acc Id: XM_017589080   ⟹   XP_017444569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81267,921,780 - 268,082,733 (-)NCBI
mRatBN7.21257,935,642 - 258,096,602 (-)NCBI
Rnor_6.01279,946,809 - 280,103,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063288266   ⟹   XP_063144336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81267,921,780 - 268,083,171 (-)NCBI
RefSeq Acc Id: XM_063288270   ⟹   XP_063144340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81267,921,780 - 267,991,125 (-)NCBI
RefSeq Acc Id: NP_001100915   ⟸   NM_001107445
- UniProtKB: D3ZC55 (UniProtKB/TrEMBL),   A6JI70 (UniProtKB/TrEMBL),   A0A8I6A9B3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444569   ⟸   XM_017589080
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000024548   ⟸   ENSRNOT00000024548
Ensembl Acc Id: ENSRNOP00000090050   ⟸   ENSRNOT00000100455
Ensembl Acc Id: ENSRNOP00000086907   ⟸   ENSRNOT00000109008
RefSeq Acc Id: XP_063144336   ⟸   XM_063288266
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A9B3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144340   ⟸   XM_063288270
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A9B3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103522   ⟸   ENSRNOT00000173367

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZC55-F1-model_v2 AlphaFold D3ZC55 1-675 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305531 AgrOrtholog
BioCyc Gene G2FUF-55266 BioCyc
Ensembl Genes ENSRNOG00000018019 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024548 ENTREZGENE
  ENSRNOT00000024548.7 UniProtKB/TrEMBL
  ENSRNOT00000100455 ENTREZGENE
  ENSRNOT00000100455.2 UniProtKB/TrEMBL
  ENSRNOT00000109008 ENTREZGENE
  ENSRNOT00000109008.2 UniProtKB/TrEMBL
  ENSRNOT00000173367.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.40 UniProtKB/TrEMBL
  Actin, Chain A, domain 4 UniProtKB/TrEMBL
InterPro ATPase_NBD UniProtKB/TrEMBL
  HSPA12A_NBD UniProtKB/TrEMBL
KEGG Report rno:307997 UniProtKB/TrEMBL
NCBI Gene 307997 ENTREZGENE
PANTHER ALPHA KINASE/ELONGATION FACTOR 2 KINASE UniProtKB/TrEMBL
  PTHR14187:SF46 UniProtKB/TrEMBL
PhenoGen Hspa12a PhenoGen
RatGTEx ENSRNOG00000018019 RatGTEx
Superfamily-SCOP SSF53067 UniProtKB/TrEMBL
UniProt A0A8I6A691 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A9B3 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L380_RAT UniProtKB/TrEMBL
  A6JI70 ENTREZGENE, UniProtKB/TrEMBL
  D3ZC55 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-11 Hspa12a  heat shock protein family A (Hsp70) member 12A  Hspa12a  heat shock protein 12A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-04-27 Hspa12a  heat shock protein 12A  Hspa12a  heat shock 70kDa protein 12A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Hspa12a  heat shock 70kDa protein 12A   Hspa12a_predicted  heat shock 70kDa protein 12A (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Hspa12a_predicted  heat shock 70kDa protein 12A (predicted)      Symbol and Name status set to approved 70820 APPROVED