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Gene: Arb2a (ARB2 cotranscriptional regulator A) Rattus norvegicus

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Symbol:

Arb2a

Name:

ARB2 cotranscriptional regulator A

RGD ID:

1305526

Description:

Predicted to contribute to siRNA binding activity. Predicted to be involved in neural crest cell development; regulation of alternative mRNA splicing, via spliceosome; and regulatory ncRNA-mediated heterochromatin formation. Predicted to be located in endoplasmic reticulum. Predicted to be active in nucleus. Orthologous to human ARB2A (ARB2 cotranscriptional regulator A); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cotranscriptional regulator ARB2A; cotranscriptional regulator FAM172A; Fam172a; family with sequence similarity 172, member A; hypothetical protein LOC294606; LOC294606; RGD1305526; similar to Sperm 1 POU-domain transcription factor (SPRM-1); uncharacterized protein LOC294606

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARB2A (ARB2 cotranscriptional regulator A)	HGNC	Ensembl, HomoloGene, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Arb2a (ARB2 cotranscriptional regulator A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arb2a (ARB2 cotranscriptional regulator A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARB2A (ARB2 cotranscriptional regulator A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARB2A (ARB2 cotranscriptional regulator A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arb2a (ARB2 cotranscriptional regulator A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARB2A (ARB2 cotranscriptional regulator A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARB2A (ARB2 cotranscriptional regulator A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arb2a (ARB2 cotranscriptional regulator A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Arb2a (ARB2 cotranscriptional regulator A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ARB2A (ARB2 cotranscriptional regulator A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ARB2A (ARB2 cotranscriptional regulator A)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arb2a (ARB2 cotranscriptional regulator A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fam172a (family with sequence similarity 172 member A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fam172a (family with sequence similarity 172 member A)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10038	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10038	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y75B8A.31	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y75B8A.31	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fam172a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fam172a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	9,289,694 - 9,753,991 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	9,289,699 - 9,753,989 (+)	Ensembl				GRCr8
mRatBN7.2	2	7,553,873 - 8,018,183 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	7,553,891 - 8,018,162 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	14,669,737 - 15,134,039 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	12,769,048 - 13,233,336 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	7,417,672 - 7,883,663 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	4,942,795 - 5,547,744 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	4,942,775 - 5,545,144 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	4,923,715 - 5,531,001 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	5,266,234 - 5,742,306 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	4,004,369 - 4,466,879 (+)	NCBI		Celera
RGSC_v3.1	2	5,283,425 - 5,766,266 (+)	NCBI
Cytogenetic Map	2	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hereditary Neoplastic Syndromes (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chitosan (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

formaldehyde (ISO)

FR900359 (ISO)

geldanamycin (ISO)

glyphosate (EXP)

mercury dichloride (ISO)

methoxychlor (EXP)

O-methyleugenol (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

neural crest cell development (ISO)

regulation of alternative mRNA splicing, via spliceosome (ISO)

regulatory ncRNA-mediated heterochromatin formation (IBA)

Cellular Component

cytoplasm (ISO)

cytosol (IEA,ISO)

endoplasmic reticulum (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

Molecular Function

protein binding (ISO)

siRNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7902581	PMID:29311329

Genomics

Comparative Map Data

Arb2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	9,289,694 - 9,753,991 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	9,289,699 - 9,753,989 (+)	Ensembl				GRCr8
mRatBN7.2	2	7,553,873 - 8,018,183 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	7,553,891 - 8,018,162 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	14,669,737 - 15,134,039 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	12,769,048 - 13,233,336 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	7,417,672 - 7,883,663 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	4,942,795 - 5,547,744 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	4,942,775 - 5,545,144 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	4,923,715 - 5,531,001 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	5,266,234 - 5,742,306 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	4,004,369 - 4,466,879 (+)	NCBI		Celera
RGSC_v3.1	2	5,283,425 - 5,766,266 (+)	NCBI
Cytogenetic Map	2	q11	NCBI

ARB2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	93,617,725 - 94,111,699 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	93,615,442 - 94,111,699 (-)	Ensembl			hg38	GRCh38
GRCh37	5	92,953,431 - 93,447,404 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	92,979,531 - 93,436,221 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	88,812,827 - 89,307,611 (-)	NCBI		Celera
Cytogenetic Map	5	q15	NCBI
HuRef	5	88,126,382 - 88,620,383 (-)	NCBI		HuRef
CHM1_1	5	92,386,140 - 92,880,378 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	94,101,790 - 94,595,756 (-)	NCBI		T2T-CHM13v2.0

Arb2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	77,856,799 - 78,314,359 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	77,850,152 - 78,314,354 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	77,708,677 - 78,166,240 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	77,702,033 - 78,166,235 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	77,847,951 - 78,305,501 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	78,172,232 - 78,629,787 (+)	NCBI		MGSCv36	mm8
Celera	13	80,000,607 - 80,449,739 (+)	NCBI		Celera
Cytogenetic Map	13	C1	NCBI
cM Map	13	41.29	NCBI

Arb2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	18,245,947 - 18,589,185 (+)	Ensembl
ChiLan1.0	NW_004955418	18,213,824 - 18,624,082 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARB2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	21,281,353 - 21,774,805 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	19,434,967 - 19,928,417 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	21,256,767 - 21,749,797 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	21,394,235 - 21,886,210 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	21,431,125 - 21,761,210 (+)	Ensembl			panPan2	panpan1.1

ARB2A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	15,281,442 - 15,695,303 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	15,281,448 - 15,694,715 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	16,618,008 - 17,043,554 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	15,165,482 - 15,591,272 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	15,165,479 - 15,579,768 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	15,121,740 - 15,547,400 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	15,121,094 - 15,533,650 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	15,326,251 - 15,751,883 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Arb2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	170,852,074 - 171,299,071 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936523	9,037,490 - 9,486,495 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936523	9,037,516 - 9,485,257 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARB2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	100,477,775 - 100,893,580 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	100,477,770 - 100,893,594 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	104,270,706 - 104,541,750 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARB2A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	87,499,061 - 87,978,159 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666049	36,694,485 - 37,141,391 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arb2a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	12,513,331 - 12,935,993 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624743	12,513,337 - 12,935,578 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Arb2a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	217,521,713 - 217,790,291 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Arb2a
2116 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	363
Count of miRNA genes:	230
Interacting mature miRNAs:	262
Transcripts:	ENSRNOT00000041541
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578664	Bmd9	Bone mineral QTL density 9	5		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	2	5736325	50736325	Rat
738010	Lnnr3	Liver neoplastic nodule remodeling QTL 3	2.94		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	2	1	42977529	Rat
9590080	Insglur4	Insulin/glucose ratio QTL 4	28.7	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	2	6152767	51152767	Rat
1600379	Mcs18	Mammary carcinoma susceptibility QTL 18	2.6		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	44538110	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
731166	Mamtr2	Mammary tumor resistance QTL 2		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	54623581	Rat
61368	Mcs1	Mammary carcinoma susceptibility QTL 1	4.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	9623581	25054526	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat

Markers in Region

D2Mit29

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	9,623,581 - 9,623,823 (+)	Marker Load Pipeline
mRatBN7.2	2	7,887,772 - 7,888,014 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	5,417,336 - 5,417,577	NCBI	Rnor6.0
Rnor_5.0	2	5,396,621 - 5,396,862	UniSTS	Rnor5.0
RGSC_v3.4	2	5,601,528 - 5,601,770	RGD	RGSC3.4
RGSC_v3.4	2	5,601,529 - 5,601,770	UniSTS	RGSC3.4
Celera	2	4,338,310 - 4,338,555	UniSTS
RGSC_v3.1	2	5,627,976 - 5,628,373	RGD
Cytogenetic Map	2	q11	UniSTS

PMC123630P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	7,907,992 - 7,908,642 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	5,437,556 - 5,438,205	NCBI	Rnor6.0
Rnor_5.0	2	5,416,841 - 5,417,490	UniSTS	Rnor5.0
RGSC_v3.4	2	5,621,749 - 5,622,398	UniSTS	RGSC3.4
Celera	2	4,358,532 - 4,359,181	UniSTS
Cytogenetic Map	2	q11	UniSTS

BI299099

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	7,729,665 - 7,729,842 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	5,118,556 - 5,118,732	NCBI	Rnor6.0
Rnor_6.0	2	5,260,146 - 5,260,322	NCBI	Rnor6.0
Rnor_5.0	2	5,097,517 - 5,097,693	UniSTS	Rnor5.0
Rnor_5.0	2	5,239,107 - 5,239,283	UniSTS	Rnor5.0
RGSC_v3.4	2	5,441,988 - 5,442,164	UniSTS	RGSC3.4
Celera	2	4,179,945 - 4,180,121	UniSTS
Cytogenetic Map	2	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
22	13	85	217	91	90	59	144	59	6	475	272	22	195	114	124	31	34	34

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006231726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC118290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041541 ⟹ ENSRNOP00000051391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	7,554,003 - 7,904,952 (+)	Ensembl
Rnor_6.0 Ensembl	2	4,989,295 - 5,545,140 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	4,942,818 - 5,111,076 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093535

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	4,942,840 - 4,975,875 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093548 ⟹ ENSRNOP00000076094

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	7,553,892 - 7,904,525 (+)	Ensembl
Rnor_6.0 Ensembl	2	4,942,775 - 5,418,063 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093741 ⟹ ENSRNOP00000076112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	9,289,758 - 9,753,981 (+)	Ensembl
mRatBN7.2 Ensembl	2	7,553,891 - 8,018,162 (+)	Ensembl
Rnor_6.0 Ensembl	2	4,942,798 - 5,545,144 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094560 ⟹ ENSRNOP00000093689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	7,553,892 - 8,018,162 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095380 ⟹ ENSRNOP00000089372

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	9,289,699 - 9,753,981 (+)	Ensembl
mRatBN7.2 Ensembl	2	7,553,892 - 8,018,162 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099388 ⟹ ENSRNOP00000077745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	9,289,712 - 9,753,989 (+)	Ensembl
mRatBN7.2 Ensembl	2	7,553,891 - 8,018,162 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103663 ⟹ ENSRNOP00000082005

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	9,289,712 - 9,753,989 (+)	Ensembl
mRatBN7.2 Ensembl	2	7,553,892 - 8,018,162 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114522 ⟹ ENSRNOP00000093437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	7,600,443 - 8,018,162 (+)	Ensembl

RefSeq Acc Id:

NM_001106401 ⟹ NP_001099871

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,703 - 9,753,984 (+)	NCBI
mRatBN7.2	2	7,553,891 - 8,018,180 (+)	NCBI
Rnor_6.0	2	4,942,802 - 5,547,744 (+)	NCBI
Rnor_5.0	2	4,923,715 - 5,531,001 (+)	NCBI
RGSC_v3.4	2	5,266,234 - 5,742,306 (+)	RGD
Celera	2	4,004,369 - 4,466,879 (+)	RGD

Sequence:

show sequence

AAGTCCCCTGCAGACCCCGGAAGTGCAACTCGAACTTGGTTGGGGCGCGGATCTCGAGAGAAAA
AGTCGGAGCCGGGCGCGAGGGAGTTCGCCCAGAGAGCTGGAAGGCCACGCCTCCTCGTGCCTAC
CCACTCAGCCTTGCAACTGGGGACAGAGCTCAGATTTGCTGTCTAGGATCGATTTGAATGAACT
CATGAAAAAGGACGAACCACCTTTTGATTTTCCAGATACACTGGAAGGCTTTGAATATGCTTTT
AATGAAAAGGGGCAGTTAAGACACATAAAAACTGGAGAACCATTTGTTTTTAACTACCGAGAAG
ACTTACACAGGTGGAACCAGAAAAGATATGAAGCTCTGGGTGAGATCATCACAAGATATGTTTA
TGAGCTCCTGGAAAGTGACTGTAACTTGAAAAAAATCTCTATTCCAGTAGATGCCACTGAAAGT
GAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCACAGAAACTGATGGTTT
TAATTCATGGTAGTGGTGTTGTCAGGGCAGGTCAGTGGGCTAGAAGGCTTATTATTAATGAAGA
TCTGGACAGTGGCACACAGATACCTTTTATTAAGAGAGCTGTGGATGAAGGTTATGGAGTCATA
GTCCTCAACCCAAATGAAAACTATATAGAAGTGGAAAAGCAGAAAATGCATAAACAATCATCTT
CTGATGGCACAGATGAGCCAGCAGGGAAGCGGGAAAGGAAAGATAAGGTCTCCAAGGAAACAAA
GAAGCGCCGCGATTTCTACGAGAAGTACCGTAACCCCCAAAAGGAGAAAGAAATGATGCAGTTG
TTTATCAGGGAAAATGGTTCTCCAGAAGAACATGCAGTCTATGTGTGGGACCATTTCATAGCCC
AGGCTGCTGCTGAGAATGTATTCTTTGTTGCTCATAGCTATGGAGGACTTGCTTTTGTTGAACT
GATGATCCAACGAGAAGCAGATGTAAAAAGTAAGGTGACTGCTGTGGCATTGACAGACTCTGTT
CACAATGTGTGGCATCAAGAAGCTGGCAAAAGCATCCGAGAATGGATGAGAGAGAACTGTTGCA
ACTGGGTCTCCAGCTCAGAACCCTTAGATACATCAGTGGAGTCCATGCTGCCTGACTGTCCCAG
AGTGTCTGCAGGCACCGACCGTCACGAGCTCACTTCGTGGAAGAGCTTCCCGTCCATCTTCAAG
TTCTTCGCGGAAGCCTCAGAAGCCAAGAGCAGCTCGCAGAAGCCGACCCTGACGCGGCGCTCGC
ACCGGATCAAGCACGAGGAGCTGTGAGCGCGCAGCCGCCCGCCGCGCCCGCACGCTGCCCGCAG
CCTCCCGGCCCCCATTAGATTGCTTTCTTCCTCCAGCGCAGGGTCGTGATGTGTCCGTCTAAAT
AGCGTTTTGCATTATTTCTAGATGAGTGCAACTGTCAAAGCAATATGGCTTCGGTGGCCGCGCT
GCCAGTGCCAGAGCGGGCCTCGCGCTGCAGGGCCCGGGGCCGACCCAGGCAGACGACCGAGGCA
GACAGCGCCGGGTGCGCCAGGGCCTGGCGCTCCTATTGCCAGGCTGATCCGCGGGGCGCGGCTG
GCCGAGCGGCGTCTGCGCGGTCCTATCGCCCGCTGCAGCGCGGCCGCTGTTGCCCAGCCTCAAT
CGTGCCCATTTTTATTCCCCTTTAAACCGAGCAAGCTTTTTTATTCTAAACCTCAAACTTCGAT
TTTTAACCGGGTTTTTCCCTCGGGTCATCTTATGAGCCCCTGTCTTTTATACAAAGCCACAAAC
CCAGGCACTAGAAATGCCAACTTTAAATTCAAAACATGATGGACTGTGTAGTTTGGAGAGTACA
ATTGTTCTCTCGTTGTAACGACTTATTTTCACTTCAAGACCCAAAGAAAAACTTTGCATAAAGT
ACCAAATCCGAATCCTCTTTTCTGCACAGTTGAATTCCAGTCTTTATATCTCTGATTTCAGGAG
AGAATGTCCAAATGAGAAACATAAATAGATCTTTTAGATGTAAGTATAAGCCCCCATTTTCAGT
GAATTTCCAAGTTACTTATAAGAGCTGACCTTACTATTAAAATATATAACGTGATGAATGACCT
TGTAATTTAGATGATACACTTAAGGTTATGTGCTCCGGGGCAGAGCCGGGGTGGTAGGTTGTGA
TCCTTACTAACTGTACTCTAACCTTTCTTATAGTGTGTCCTTTCAGAAAATGACACTGCATACC
TCTTCCTTCCAAAAGGCCAAGGAGGGTTAAAATGGTTATTTCCCTCTACAGTAGGAAAAGAGAA
GCCTAGTGTGAATGAGTTTCTCTTGTCCAAAATGTTTAGTGTTCTCTTCCTGTGATAGGGTTCT
GCCCTGTAATTCCAACAGTTAGGTCCTTTAACCCAACACTGTTAACAACTGGCCAACACTGTGA
AGTACAAAGGATAAAATGTGTTGACATTTTACTGGCTTTCAAATAAAAATATGAAGTATTGAAT
TTTTTAATTAGTGAAGATTATATCAGGTGGATGAGATTGTGATTTAATACATCCATCCTTTTTA
AAATGAATTCAACAAGTAATGTGTCTGCCTTGTTTGAGACCATGAGACAGTATAATCAAAATGA
GTCTGAGTTACTAACACCAGGGAAGGAAATCTGAGCTCAGGGGGAATATTGTCATATGAACTGA
TTTTAGCAGGTTTCAAACTGGTAACATCTCATTCTGTTTACGAATACATACATTCAGTAGTTCT
GTAGTGACAGTAAAGTCCTCAGTGACCATGGCTGGGCATCTTCTGATATTCCTTAGGCAGAAAC
ACCTTAGGAAAAATCAAAACAGCATTTTATACAGCTTCTTCCAAAAATGTCAAGCACATTGTAC
TGGCATAGTGACCCTTTGCATTTCTGATTTTAGAAGGATTGATGAACTCTGAAAATAATGATGT
CTTCCCAGTGACTGGGCTTAAAAAATTGGTGTGTGTTGAGTATATCTTACCAAATGTTATAAAC
TGTCTGCTGTTCTCAGCATGTGAAAATTTTCTTAAGAAACTGATTTTGCAACATTAAAGGGGGG
AAACCTATGCAGTTTAAATTTGCTAAACTTCTGCAGATAAACTAAAGCCAAGTAACTATGCTCG
GCTCATGGACCAAATAGACATCTCCTGTTTCTCCCTTCCAGGTTCCTCTGTGCAGCTCTGAAAT
CTTGTTTAGAAAAAGTCTCTGTTTCCTTGGGATGAGAACTTTATAATCACTGAATTGTTCGCTT
GGCATCTGTCTAGTAAAGAGCTATTTACAAGATTACATTTTGTAAATGTCTGTTACTACTTGTG
TGTCCCTGCTATAGCAACCCAGAAGGAGCCAGGCACAGCATCCCAGATCACCAGCTGATGAGTG
ACAAGTGATTCCTTACAATGTAGGATTTCTTGACCTGTTGAGTGGGTTGCTGTTGGTATATCTG
TACTGATGTTATTCACTCGGCTTTCTTTGGATAACAACAATCAGTTGGCAGTACCCTGCCTGCA
TGGAGGCCAGAGCTGTTCTGGTCTCTTCCTATTTTTATTTTCTTAAAGAGATTTTAGGCACCTA
GTGGTAGAAAGGTAGGGTGTGAGTTTTTTTTTTTTTTCTTTAACTTCTTATACTTCGTTCTTAA
AGTAAATAGATGGAGAAAGACATAAATTGGAAATTCAAAAGAGTCTGATTCAGCGAGGCAGTTG
CTTTGGAGCTTTTTAGGGTACATAACACACAGTCCTTTGGATGTTTGCTAGACGTCGACTTGTA
ATAATTGTCCTTTTCTCACATTACTGCCTTGTGCTTTCTGAAACGCATTTTTGTTTGTTTATAC
ATCAAAAATAATAAAGTGCGGAGCCTCCTGTAATCTTGCTTACCATTTTAAAATAAAAATTTCC
AAC

hide sequence

RefSeq Acc Id:

XM_008760626 ⟹ XP_008758848

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,697 - 9,753,991 (+)	NCBI
mRatBN7.2	2	7,553,875 - 8,018,183 (+)	NCBI
Rnor_6.0	2	4,942,795 - 5,111,527 (+)	NCBI

Sequence:

show sequence

GACGTTTAAGTCCCCTGCAGACCCCGGAAGTGCAACTCGAACTTGGTTGGGGCGCGGATCTCGA
GAGAAAAAGTCGGAGCCGGGCGCGAGGGAGTTCGCCCAGAGAGCTGGAAGGCCACGCCTCCTCG
TGCCTACCCACTCAGCCTTGCAACTGGGGACAGAGCTCAGATATTAGAAGCTTCTGAGGTAATA
CATTTTTTGCTGAAAATATCTCTATTGCTGTTCAGACTGTCTTCTGAAGATCGATGTCTATTTC
CTTGAGCTCTTTAATTTTCTTGCCAATTTGGATAAACATGGCACAAATCCAGCAGGGAGGTCCA
AATGAAAAAGAAAAGACTACACCATTGAAAGATTTGCTGTCTAGGATCGATTTGAATGAACTCA
TGAAAAAGGACGAACCACCTTTTGATTTTCCAGATACACTGGAAGGCTTTGAATATGCTTTTAA
TGAAAAGGGGCAGTTAAGACACATAAAAACTGGAGAACCATTTGTTTTTAACTACCGAGAAGAC
TTACACAGGTGGAACCAGAAAAGATATGAAGCTCTGGGTGAGATCATCACAAGATATGTTTATG
AGCTCCTGGAAAGTGACTGTAACTTGAAAAAAATCTCTATTCCAGAAGGTTATGGAGTCATAGT
CCTCAACCCAAATGAAAACTATATAGAAGTGGAAAAGCAGAAAATGCATAAACAATCATCTTCT
GATGGCACAGATGAGCCAGCAGGGAAGCGGGAAAGGAAAGATAAGGTCTCCAAGGAAACAAAGA
AGCGCCGCGATTTCTACGAGAAGTACCGTAACCCCCAAAAGGAGAAAGAAATGATGCAGTTGTT
TATCAGGGTGAGAAAGAGTAAAAGTCCCTCTTTTGTTTCTTTGGTTTTCTTAGGATTTCATTTC
ATTTCAATTACTTTATTGCTTTTGGAAGCTGTTGATTGTTTTAGTTTTTAGCAAACATTCATTT
TTCTTAGTTACCTGTCTCCCTGAATGGGATTTTTTTTTATTTAAGTTACAAAACCTATCACTTA
TTTCAGTGTGACATTTTATTGACTCTCTAATGCTGATGCTGTTGTCTTTTGTGTCATTTGCTGT
TCTAAGGAACAATTTCTAAAGTCTTAATATGATGCATGCAAAAGGAAGAAACCTTTTTAATACA
CTTCTCC

hide sequence

RefSeq Acc Id:

XM_039101894 ⟹ XP_038957822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,697 - 9,753,991 (+)	NCBI
mRatBN7.2	2	7,553,875 - 8,018,183 (+)	NCBI

RefSeq Acc Id:

XM_039101899 ⟹ XP_038957827

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,695 - 9,753,991 (+)	NCBI
mRatBN7.2	2	7,553,874 - 8,018,183 (+)	NCBI

RefSeq Acc Id:

XM_039101903 ⟹ XP_038957831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,698 - 9,753,991 (+)	NCBI
mRatBN7.2	2	7,553,876 - 8,018,183 (+)	NCBI

RefSeq Acc Id:

XM_063281470 ⟹ XP_063137540

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,696 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281471 ⟹ XP_063137541

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,697 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281472 ⟹ XP_063137542

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,697 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281473 ⟹ XP_063137543

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,697 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281474 ⟹ XP_063137544

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,694 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281475 ⟹ XP_063137545

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,696 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281476 ⟹ XP_063137546

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,698 - 9,640,336 (+)	NCBI

RefSeq Acc Id:

XM_063281477 ⟹ XP_063137547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,698 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281478 ⟹ XP_063137548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,698 - 9,680,137 (+)	NCBI

RefSeq Acc Id:

XM_063281479 ⟹ XP_063137549

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,694 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281480 ⟹ XP_063137550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,698 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281481 ⟹ XP_063137551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,694 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281482 ⟹ XP_063137552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,698 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281483 ⟹ XP_063137553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,696 - 9,611,816 (+)	NCBI

RefSeq Acc Id:

XM_063281484 ⟹ XP_063137554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,698 - 9,753,991 (+)	NCBI

RefSeq Acc Id:

XM_063281485 ⟹ XP_063137555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	9,289,698 - 9,753,991 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099871	(Get FASTA)	NCBI Sequence Viewer
	NP_001426415	(Get FASTA)	NCBI Sequence Viewer
	NP_001426416	(Get FASTA)	NCBI Sequence Viewer
	NP_001426417	(Get FASTA)	NCBI Sequence Viewer
	NP_001426418	(Get FASTA)	NCBI Sequence Viewer
	NP_001426419	(Get FASTA)	NCBI Sequence Viewer
	NP_001426420	(Get FASTA)	NCBI Sequence Viewer
	XP_008758848	(Get FASTA)	NCBI Sequence Viewer
	XP_038957822	(Get FASTA)	NCBI Sequence Viewer
	XP_038957827	(Get FASTA)	NCBI Sequence Viewer
	XP_038957831	(Get FASTA)	NCBI Sequence Viewer
	XP_063137540	(Get FASTA)	NCBI Sequence Viewer
	XP_063137541	(Get FASTA)	NCBI Sequence Viewer
	XP_063137542	(Get FASTA)	NCBI Sequence Viewer
	XP_063137543	(Get FASTA)	NCBI Sequence Viewer
	XP_063137544	(Get FASTA)	NCBI Sequence Viewer
	XP_063137545	(Get FASTA)	NCBI Sequence Viewer
	XP_063137546	(Get FASTA)	NCBI Sequence Viewer
	XP_063137547	(Get FASTA)	NCBI Sequence Viewer
	XP_063137548	(Get FASTA)	NCBI Sequence Viewer
	XP_063137549	(Get FASTA)	NCBI Sequence Viewer
	XP_063137550	(Get FASTA)	NCBI Sequence Viewer
	XP_063137551	(Get FASTA)	NCBI Sequence Viewer
	XP_063137552	(Get FASTA)	NCBI Sequence Viewer
	XP_063137553	(Get FASTA)	NCBI Sequence Viewer
	XP_063137554	(Get FASTA)	NCBI Sequence Viewer
	XP_063137555	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09930	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000076112
	ENSRNOP00000076112.2
	ENSRNOP00000077745
	ENSRNOP00000077745.1
	ENSRNOP00000082005
	ENSRNOP00000082005.1
	ENSRNOP00000089372
	ENSRNOP00000089372.1

RefSeq Acc Id:

NP_001099871 ⟸ NM_001106401

- UniProtKB:

A0A1W2Q630 (UniProtKB/TrEMBL), A6I4H2 (UniProtKB/TrEMBL), A0A8I6ALB8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKKDEPPFDFPDTLEGFEYAFNEKGQLRHIKTGEPFVFNYREDLHRWNQKRYEALGEIITRYVY
ELLESDCNLKKISIPVDATESEPKSFIFMSEDALTNPQKLMVLIHGSGVVRAGQWARRLIINED
LDSGTQIPFIKRAVDEGYGVIVLNPNENYIEVEKQKMHKQSSSDGTDEPAGKRERKDKVSKETK
KRRDFYEKYRNPQKEKEMMQLFIRENGSPEEHAVYVWDHFIAQAAAENVFFVAHSYGGLAFVEL
MIQREADVKSKVTAVALTDSVHNVWHQEAGKSIREWMRENCCNWVSSSEPLDTSVESMLPDCPR
VSAGTDRHELTSWKSFPSIFKFFAEASEAKSSSQKPTLTRRSHRIKHEEL

hide sequence

RefSeq Acc Id:

XP_008758848 ⟸ XM_008760626

- Peptide Label:

isoform X14

- Sequence:

show sequence

MSISLSSLIFLPIWINMAQIQQGGPNEKEKTTPLKDLLSRIDLNELMKKDEPPFDFPDTLEGFE
YAFNEKGQLRHIKTGEPFVFNYREDLHRWNQKRYEALGEIITRYVYELLESDCNLKKISIPEGY
GVIVLNPNENYIEVEKQKMHKQSSSDGTDEPAGKRERKDKVSKETKKRRDFYEKYRNPQKEKEM
MQLFIRVRKSKSPSFVSLVFLGFHFISITLLLLEAVDCFSF

hide sequence

Ensembl Acc Id:

ENSRNOP00000051391 ⟸ ENSRNOT00000041541

Ensembl Acc Id:

ENSRNOP00000076094 ⟸ ENSRNOT00000093548

Ensembl Acc Id:

ENSRNOP00000076112 ⟸ ENSRNOT00000093741

RefSeq Acc Id:	XP_038957827 ⟸ XM_039101899
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038957822 ⟸ XM_039101894
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038957831 ⟸ XM_039101903
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000077745 ⟸ ENSRNOT00000099388

Ensembl Acc Id:

ENSRNOP00000089372 ⟸ ENSRNOT00000095380

Ensembl Acc Id:

ENSRNOP00000093437 ⟸ ENSRNOT00000114522

Ensembl Acc Id:

ENSRNOP00000082005 ⟸ ENSRNOT00000103663

Ensembl Acc Id:

ENSRNOP00000093689 ⟸ ENSRNOT00000094560

RefSeq Acc Id:	XP_063137544 ⟸ XM_063281474
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063137549 ⟸ XM_063281479
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063137551 ⟸ XM_063281481
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063137540 ⟸ XM_063281470
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063137545 ⟸ XM_063281475
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063137553 ⟸ XM_063281483
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063137542 ⟸ XM_063281472
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063137543 ⟸ XM_063281473
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063137541 ⟸ XM_063281471
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063137550 ⟸ XM_063281480
- Peptide Label:	isoform X12
- UniProtKB:	A0A1W2Q607 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137547 ⟸ XM_063281477
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZU52 (UniProtKB/TrEMBL), A0A1W2Q607 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137554 ⟸ XM_063281484
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_063137552 ⟸ XM_063281482
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_063137555 ⟸ XM_063281485
- Peptide Label:	isoform X18

RefSeq Acc Id:	XP_063137548 ⟸ XM_063281478
- Peptide Label:	isoform X10
- UniProtKB:	A0A1W2Q607 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137546 ⟸ XM_063281476
- Peptide Label:	isoform X8
- UniProtKB:	A0A1W2Q607 (UniProtKB/TrEMBL)

Protein Domains

Arb2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZYE5-F1-model_v2	AlphaFold	D3ZYE5	1-370	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691042

Promoter ID:

EPDNEW_R1566

Type:

initiation region

Name:

Fam172a_1

Description:

family with sequence similarity 172, member A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R1567

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	4,942,803 - 4,942,863	EPDNEW

RGD ID:

13691057

Promoter ID:

EPDNEW_R1567

Type:

multiple initiation site

Name:

Fam172a_2

Description:

family with sequence similarity 172, member A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R1566

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	4,942,912 - 4,942,972	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305526	AgrOrtholog
BioCyc Gene	G2FUF-55067	BioCyc
Ensembl Genes	ENSRNOG00000013844	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000093741	ENTREZGENE
	ENSRNOT00000093741.3	UniProtKB/TrEMBL
	ENSRNOT00000095380	ENTREZGENE
	ENSRNOT00000095380.2	UniProtKB/TrEMBL
	ENSRNOT00000099388	ENTREZGENE
	ENSRNOT00000099388.2	UniProtKB/TrEMBL
	ENSRNOT00000103663	ENTREZGENE
	ENSRNOT00000103663.2	UniProtKB/TrEMBL
InterPro	AB_hydrolase	UniProtKB/TrEMBL
	Arb2	UniProtKB/TrEMBL
	Arb2_dom	UniProtKB/TrEMBL
KEGG Report	rno:294606	UniProtKB/TrEMBL
NCBI Gene	294606	ENTREZGENE
PANTHER	PTHR21357:SF3	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	Arb2	UniProtKB/TrEMBL
PhenoGen	Arb2a	PhenoGen
RatGTEx	ENSRNOG00000013844	RatGTEx
Superfamily-SCOP	SSF53474	UniProtKB/TrEMBL
UniProt	A0A1W2Q607	ENTREZGENE
	A0A1W2Q630	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y692	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZU52	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AKD2	ENTREZGENE
	A0A8I6ALB8	ENTREZGENE
	A0A8I6GH74	ENTREZGENE, UniProtKB/TrEMBL
	A6I4H2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-08-25	Arb2a	ARB2 cotranscriptional regulator A	Fam172a	family with sequence similarity 172, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-09	Fam172a	family with sequence similarity 172, member A	RGD1305526	similar to Sperm 1 POU-domain transcription factor (SPRM-1)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1305526	similar to Sperm 1 POU-domain transcription factor (SPRM-1)	RGD1305526_predicted	similar to Sperm 1 POU-domain transcription factor (SPRM-1) (predicted)	'predicted' is removed	2292626	APPROVED
2008-01-09	RGD1305526_predicted	similar to Sperm 1 POU-domain transcription factor (SPRM-1) (predicted)	LOC682045	similar to CG10038-PB, isoform B	Data merged from RGD:1588122	1643240	APPROVED
2006-11-19	LOC682045	similar to CG10038-PB, isoform B			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1305526_predicted	similar to Sperm 1 POU-domain transcription factor (SPRM-1) (predicted)	LOC294606_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC294606_predicted	similar to Sperm 1 POU-domain transcription factor (SPRM-1) (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar