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Gene: Stk11ip (serine/threonine kinase 11 interacting protein) Rattus norvegicus

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Symbol:

Stk11ip

Name:

serine/threonine kinase 11 interacting protein

RGD ID:

1305046

Description:

Predicted to enable protein kinase binding activity. Predicted to be involved in intracellular protein localization. Predicted to be active in cytoplasm. Orthologous to human STK11IP (serine/threonine kinase 11 interacting protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC301535; MGC188315; serine/threonine-protein kinase 11-interacting protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	84,461,336 - 84,476,915 (+)	Ensembl				GRCr8
mRatBN7.2	9	77,012,297 - 77,027,989 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	77,012,693 - 77,027,873 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	85,456,898 - 85,472,116 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	90,585,773 - 90,600,991 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	88,971,951 - 88,987,175 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	82,718,343 - 82,733,894 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	82,718,709 - 82,734,393 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	82,487,604 - 82,503,882 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	74,799,450 - 74,814,635 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	74,582,562 - 74,597,564 (+)	NCBI		Celera
RGSC_v3.1	9	74,949,013 - 74,974,027 (+)	NCBI
Cytogenetic Map	9	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

5-aza-2'-deoxycytidine (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

choline (ISO)

cisplatin (ISO)

clofibrate (ISO)

cobalt dichloride (EXP)

coumarin (ISO)

DDT (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

L-methionine (ISO)

methamphetamine (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (ISO)

phenobarbital (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein localization (IBA,IEA,ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO)

Molecular Function

protein kinase binding (IEA,ISO)

protein sequestering activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11741830	PMID:12477932	PMID:17897319	PMID:22871113

Genomics

Comparative Map Data

Stk11ip
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	84,461,336 - 84,476,915 (+)	Ensembl				GRCr8
mRatBN7.2	9	77,012,297 - 77,027,989 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	77,012,693 - 77,027,873 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	85,456,898 - 85,472,116 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	90,585,773 - 90,600,991 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	88,971,951 - 88,987,175 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	82,718,343 - 82,733,894 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	82,718,709 - 82,734,393 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	82,487,604 - 82,503,882 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	74,799,450 - 74,814,635 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	74,582,562 - 74,597,564 (+)	NCBI		Celera
RGSC_v3.1	9	74,949,013 - 74,974,027 (+)	NCBI
Cytogenetic Map	9	q33	NCBI

STK11IP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	219,597,857 - 219,616,451 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	219,595,805 - 219,616,452 (+)	Ensembl			hg38	GRCh38
GRCh37	2	220,462,579 - 220,481,173 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	220,170,840 - 220,189,417 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	220,288,100 - 220,306,678	NCBI
Celera	2	214,232,566 - 214,251,145 (+)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	212,315,421 - 212,334,108 (+)	NCBI		HuRef
CHM1_1	2	220,468,434 - 220,486,998 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	220,082,587 - 220,101,184 (+)	NCBI		T2T-CHM13v2.0

Stk11ip
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	75,498,173 - 75,513,979 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	75,498,173 - 75,513,979 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	75,521,529 - 75,537,335 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	75,521,529 - 75,537,335 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	75,518,104 - 75,533,910 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	76,367,426 - 76,383,401 (+)	NCBI		MGSCv36	mm8
MGSCv36	1	75,404,694 - 75,420,483 (+)	NCBI		MGSCv36	mm8
Celera	1	76,012,473 - 76,038,291 (+)	NCBI		Celera
Cytogenetic Map	1	C4	NCBI
cM Map	1	39.16	NCBI

Stk11ip
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	13,870,730 - 13,885,353 (-)	Ensembl
ChiLan1.0	NW_004955453	13,870,780 - 13,885,603 (-)	NCBI	ChiLan1.0	ChiLan1.0

STK11IP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	122,223,657 - 122,246,495 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	122,239,498 - 122,261,463 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	106,854,466 - 106,873,588 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	225,444,586 - 225,463,613 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	225,445,703 - 225,463,355 (+)	Ensembl			panPan2	panpan1.1

STK11IP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	26,107,210 - 26,122,790 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	26,107,232 - 26,123,306 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	26,932,621 - 26,948,195 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	26,122,336 - 26,137,910 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	26,122,347 - 26,137,903 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	26,026,218 - 26,041,779 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	25,962,238 - 25,977,834 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	25,982,919 - 25,998,523 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stk11ip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	175,622,896 - 175,639,304 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	1,965,962 - 1,981,842 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	1,965,686 - 1,982,094 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STK11IP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	121,604,166 - 121,619,063 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	121,604,075 - 121,619,066 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

STK11IP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	105,494,492 - 105,517,153 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	105,493,621 - 105,517,206 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	93,884,784 - 93,907,068 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stk11ip
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	5,463,965 - 5,479,078 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624823	5,464,571 - 5,479,346 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Stk11ip
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	148,874,698 - 148,890,124 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Stk11ip
234 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	124
Count of miRNA genes:	107
Interacting mature miRNAs:	115
Transcripts:	ENSRNOT00000027256
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	82168823	86720295	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	83161999	118999486	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat

Markers in Region

D9Bro1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	9	84,474,983 - 84,475,093 (+)	Marker Load Pipeline
mRatBN7.2	9	77,026,343 - 77,026,453 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	82,732,357 - 82,732,466	NCBI	Rnor6.0
Rnor_5.0	9	82,501,618 - 82,501,727	UniSTS	Rnor5.0
RGSC_v3.4	9	74,813,097 - 74,813,207	RGD	RGSC3.4
RGSC_v3.4	9	74,813,098 - 74,813,207	UniSTS	RGSC3.4
RGSC_v3.1	9	74,973,168 - 74,973,277	RGD
RH 3.4 Map	9	757.3	UniSTS
RH 3.4 Map	9	757.3	RGD
Cytogenetic Map	9	q34	UniSTS
Cytogenetic Map	9	q33	UniSTS

RH130949

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	77,027,635 - 77,027,820 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	82,733,649 - 82,733,833	NCBI	Rnor6.0
Rnor_5.0	9	82,502,910 - 82,503,094	UniSTS	Rnor5.0
RGSC_v3.4	9	74,814,390 - 74,814,574	UniSTS	RGSC3.4
Celera	9	74,597,319 - 74,597,503	UniSTS
RH 3.4 Map	9	758.1	UniSTS
Cytogenetic Map	9	q33	UniSTS

MARC_23613-23614:1027526035:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	9	84,474,939 - 84,475,796 (+)	Marker Load Pipeline
mRatBN7.2	9	77,026,299 - 77,027,156 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	82,732,313 - 82,733,169	NCBI	Rnor6.0
Rnor_5.0	9	82,501,574 - 82,502,430	UniSTS	Rnor5.0
RGSC_v3.4	9	74,813,054 - 74,813,910	UniSTS	RGSC3.4
Cytogenetic Map	9	q33	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC168233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000027256 ⟹ ENSRNOP00000027256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	84,461,354 - 84,476,915 (+)	Ensembl
mRatBN7.2 Ensembl	9	77,012,693 - 77,027,873 (+)	Ensembl
Rnor_6.0 Ensembl	9	82,718,709 - 82,733,886 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080524 ⟹ ENSRNOP00000074996

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	84,461,336 - 84,476,513 (+)	Ensembl
mRatBN7.2 Ensembl	9	77,012,693 - 77,027,873 (+)	Ensembl
Rnor_6.0 Ensembl	9	82,718,753 - 82,734,393 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115992 ⟹ ENSRNOP00000092473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	84,461,354 - 84,476,915 (+)	Ensembl
mRatBN7.2 Ensembl	9	77,012,693 - 77,027,873 (+)	Ensembl

RefSeq Acc Id:

NM_001106922 ⟹ NP_001100392

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,461,336 - 84,476,521 (+)	NCBI
mRatBN7.2	9	77,012,693 - 77,027,881 (+)	NCBI
Rnor_6.0	9	82,718,709 - 82,733,894 (+)	NCBI
Rnor_5.0	9	82,487,604 - 82,503,882 (+)	NCBI
RGSC_v3.4	9	74,799,450 - 74,814,635 (+)	RGD
Celera	9	74,582,562 - 74,597,564 (+)	RGD

Sequence:

show sequence

CTGCTCTAAAGGAGTCTGACTGCCAAAGTGATTGGAGTGCGGGTCACGAGGGCCCATGGGCTCC
GGAGGTCCTATGTTTTTGGAAAGGGGGCCAGAGAAGACGTCCTTTATAGCTGTTGCTTACTTTT
TACATTGCACGACGCCTCCATTTGCACGAAAGCTCTGGGTTTTTGTCGACACCGCCCACCTGAG
GCTCTTCCGCTTCCCCTTTTCCCAGGCTCCGCCCCCCAGCGTCCCGTGGCTATGACGACCGCCC
CGCGGGACTCAGTAGTGTGGAAGCTCGCGGGACTTTTGCGGGAGTCGGGGGATGCAGTTCTCTC
TGGCTGTAGCACACTGAGCCTGCTAACAGCCACACTGCAGCAGCTGAACAGAGTGTTTGAACTG
TACCTAGGGCCATGGGGCCCCGGCCAGACAGGCTTTGTGGCTCTTCCCTCCCACCCTGCAGACT
CACCAGTCATCCTCCAGCTTCAGTTCCTTTTCGATGTGCTGCAGAAAACACTGTCACTCAAGCT
GGTCCACACCCCTGGTGTTGGCCTTCCAGGGCCTATCAAGATTTTCCCCTTCAAGTCCCTTCGA
CAGCTGGAGCTTCGAGGAGTCCCTATCCACAGCCTGTGTGGCCTCCGTGGCATCTACTCACAGC
TAGAGACCCTGGTTTGTAACAGAAGCATCCAGGCACTAGAGGAGCTCTTGTCGGCCTGCGGTGG
GGACCTCTGCTCTGCCCTCCCCTGGCTAGCCTTGCTCTCTGCCGACTTCAGCTACAATGCACTT
AGCAACTTAGACAGCTCCCTGCGACTCCTGTCCGCTCTGCGCTTCCTCAACCTGAGCCACAACC
ATATCCAGGACTGCAAAGGCTTCCTGATGGACTTATCTGAGCTGTACCATTTGGACATCTCCTA
TAACCACCTGCGCTTGGTGCCAAGAATGGGACCGTCAGGGGCTGCTCTGGGGACTCTGATCCTG
AGGGCCAATGAGCTTCGGAGCCTTCAGGGCCTGGAGCAGCTGAAGAACCTGCGGCATCTCGATG
TGGCCTATAACCTTCTAGAAGGACACACAGAGCTGGCACCACTATGGCTGCTGGCTGAGCTCCG
TAAGCTCTATCTGGAAGGTAACCCTTTGTGGTTCCACCCTGCGCACCGGGCAACCACCGCTCAG
TACTTGTCACCTCGGGCCAGAGATGCTGCTCATGGCTTCCTTCTTGATGGCAAGGTTTTGTCCC
TGAAGGATCTTCAGCAGACTTCAGAATCTTCACGGCTTGGTCCCATGACCCAACCTTTGTCCTG
GCCAGTGGGGAGTACCACTGAAACCTCAGGTGGCCCTGAGCTGAGTGATAGCCTCTCCTCAGGG
GGCATTGTGGCCCAGGCTCCACTTCGTAAGGTTAAGAGCCGAGTCCGTGTGAGGCGGGCTAGCA
TCTCTGAGCCCAGTGACACAGACCCAGAGCTTCGAACTCTGGACCCCTCCCCGGCTGGGTGGTT
TGTGCAGCAACACCGGGAACTTGAGCTGCTGGCCAGCTTCCGGGAGCGGTTTGGCTGTGACTGG
CTGCAGTATAGGAGCCACCTGGAGACCATGGGGAGCCCCCCTCTTGCCACCATCAAGACTCCTG
CCCTTGGAACCCCTCCTCTGGATGCCCAGAGCCTGGAGACTGCACGCAGCCCTCCAGCGATAGG
GGAAGACACTAAGGAATCGCCAGAGAAGGTGTCAGAGGAAGGCAGGGAGGAGCTCGAGCCCCAC
GAAGAAGAGAGGGAAGAGCAGGAGAGAGAAGAGGGATCGAGAGAGGACCTGGGGGAGGAAGAGG
AGCAGGAGCAGAAGGCAGTGGAAGCAGAGCTCTGTCGCCCCATGTTGGTGTGTCCCTTGCAGGG
AACTGAGGGCGTGCAAGGAAGGGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTTTGAAGTG
GGACTCCAAGCAGCCCAGACTCTGGAGCGGCTGGAGCTACAGAGCCTGGTGTCAGCTGAGCTAC
AGTCAGAGACTGAAAGCCAGAGAGAACCAGGGTCTGAGGGCTCAGGCCCACCCTCTGGGGCTCC
AGTTCTTGTTCTGCGCTTTTCCTACATTTGTCCCGACCGGCAGTTGCGTTGCTATGCTGTGCTG
GAGCCAGAGGCCCATGAAGCCATCCAGGAGCTACTTGCTGTACTGACCCCATTCACCAGCGTGA
AAGACCAGCAGCCTGGGGAGGCCAAGGACCCACAGGGGCCCAGATTCCAGTGCCTGCGCTGTAG
CTGTGAGTTCAAGCCTCAGGAGCCCAGGTTGGGACTGGAGAGTGACGACGGCTGGAAGCCTCTG
TTTCAAAATACAGAATCTCCTGTTGTGTGTCCAAACTGTGGGAGTGACCATGTGGTTCTCCTAG
CTGTGTCTGGGGAAGTCCCTAATAGAGAGCGGAACCAGGAAGAACAATCATCAGATTCTGCCTG
TGACCTTGCTGACCACAGTGGCTGTCCCAGTGTGCCTGACGGCATCCCACCTCAGGCATCCATA
TCCCATGGCTGCAGCAGCTGGAACCTCAGCCCGACCCTTGGACACACAGGTTTTCGATCTGTGG
ACCACCGACTCCGGCTCTTCCTGGATGTTGAGGTGTTCAGTGACTCCGAGGAGGAGTTCCAGTG
CTGCACCAAGGTGCCGGTGGTGTTAGCAGGCCACACGAGGGAGTCTCTGTGCCTTGTGGTTGTG
TCTGACCGTATGCTTTACCTGTTGAAGGTGACAGGGCCCATCTGCGGGCCTCCTGCTAGCTGGC
TTGAGCCCACCCTGGCCATTCCTCTGCAGGATCTGAGTGGCATGGAGCTTGGCCTTGCAGGCCA
GAGCCTTCGTTTAGAGTGGGCAGCTGGGACTGGCCACTGTGTGCTGCTGCCCCGAGATGCCAGG
CAGTGCCGTGCCTTCCTTGAGGAGCTCACTGGGGTTTTGCAGTCTCTGCCTCGTACCCAGAGGA
ACTGCATCAGTGCTACAGAGGAGACGGTGACCCCGCAGCATCGGCTCTGGCCATTGCTGGGGAA
AGATACTTCCGCAGAGACGCCCCAGTTTTTCTACCTTCGCGCCTTCCTGGCTGAAGGCTCCTCT
ACCTGTCCTGTGTCCCTGTTGCTGACGTTGTCCACCTTGTACCTATTAGATGAAGACCCTGTAA
GGTCCCATGCAGAATCTCCCCTCCCAGTGGGGTCTGGTGAAGCCTCTGAGCAGCCTGCTCCCCA
GGGGCCAGGTCCTTCTTTGCAGGTCAGGGAGCAGCAACCACTCAGCAGTCTGAGCTCTGTGCAG
CTGTATCGCACAAGCCCCTTGGACCTGCGGCTGATCTTCTACGATGAGGTGTCTCGGCTGGAGA
GTTTCTGGGCACTCCGTGTTGTGTGTGGGGAGCAGCTGACAGACCTGCTGGCCTGGATTCGGGA
GCCCTGGGAAGAGTTGTTTTCCATTGGACTCCGGACAGTAACCCAGGAGGCTCTGGACCTCGAC
CGATAAGGGTCTCACCATGTAACATTGGCTGGTCTAGAACTGGCTATGTAGACCAGGCTGGCTT
TGGATTCATGGAGACCTGACTGCCTCTAAGTGCTGAGATGAATGGCTGAGCCACCAACTGTGAA
AAAATTGTGAACTTCCCCTCTTCCTAAAAGTTTACATTTTAAATAAAGACCTCCAATAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006245188 ⟹ XP_006245250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI
mRatBN7.2	9	77,012,310 - 77,027,989 (+)	NCBI
Rnor_6.0	9	82,718,343 - 82,733,894 (+)	NCBI
Rnor_5.0	9	82,487,604 - 82,503,882 (+)	NCBI

Sequence:

show sequence

AGAAAGAAAAGAGAGGTGGCATCCCTGCCAGCCTTAGCCCTTCTGACTGACATAAAAGAACTTC
GCAAGGACCACAGGGCAGCTGTTTCACTGGAAAGCCAATATTTGTTTTGGATGAGTTCTTTTCC
TTCTAATACAAAATCCCATTTCTCCAAACTTTGCTTCCCCGCCCAGTCTGCAAACAAGGAGTCA
GGTTTCTCTCTCCGCTGAAGGGGCCACCCAGAGCACAGCTAGACCTGAGGCCCAGCTCGGGGGC
TTAATCCCGGCTCGCTCTGTCCTATTGACACATCGGCTCGCCCAGGGCGTGGCTTCCGGTAGAG
AAGGCAGGCTTTCCGGTAGGTCCTTTGCTTTCCGGGGTGGGACTTCCTGCTCTAAAGGAGTCTG
ACTGCCAAAGTGATTGGAGTGCGGGTCACGAGGGCCCATGGGCTCCGGAGGTCCTATGTTTTTG
GAAAGGGGGCCAGAGAAGACGTCCTTTATAGCTGTTGCTTACTTTTTACATTGCACGACGCCTC
CATTTGCACGAAAGCTCTGGGTTTTTGTCGACACCGCCCACCTGAGGCTCTTCCGCTTCCCCTT
TTCCCAGGCTCCGCCCCCCAGCGTCCCGTGGCTATGACGACCGCCCCGCGGGACTCAGTAGTGT
GGAAGCTCGCGGGACTTTTGCGGGAGTCGGGGGATGCAGTTCTCTCTGGCTGTAGCACACTGAG
CCTGCTAACAGCCACACTGCAGCAGCTGAACAGAGTGTTTGAACTGTACCTAGGGCCATGGGGC
CCCGGCCAGACAGGCTTTGTGGCTCTTCCCTCCCACCCTGCAGACTCACCAGTCATCCTCCAGC
TTCAGTTCCTTTTCGATGTGCTGCAGAAAACACTGTCACTCAAGCTGGTCCACACCCCTGGTGT
TGGCCTTCCAGGGCCTATCAAGATTTTCCCCTTCAAGTCCCTTCGACAGCTGGAGCTTCGAGGA
GTCCCTATCCACAGCCTGTGTGGCCTCCGTGGCATCTACTCACAGCTAGAGACCCTGGTTTGTA
ACAGAAGCATCCAGGCACTAGAGGAGCTCTTGTCGGCCTGCGGTGGGGACCTCTGCTCTGCCCT
CCCCTGGCTAGCCTTGCTCTCTGCCGACTTCAGCTACAATGCACTTAGCAACTTAGACAGCTCC
CTGCGACTCCTGTCCGCTCTGCGCTTCCTCAACCTGAGCCACAACCATATCCAGGACTGCAAAG
GCTTCCTGATGGACTTATCTGAGCTGTACCATTTGGACATCTCCTATAACCACCTGCGCTTGGT
GCCAAGAATGGGACCGTCAGGGGCTGCTCTGGGGACTCTGATCCTGAGGGCCAATGAGCTTCGG
AGCCTTCAGGGCCTGGAGCAGCTGAAGAACCTGCGGCATCTCGATGTGGCCTATAACCTTCTAG
AAGGACACACAGAGCTGGCACCACTATGGCTGCTGGCTGAGCTCCGTAAGCTCTATCTGGAAGG
TAACCCTTTGTGGTTCCACCCTGCGCACCGGGCAACCACCGCTCAGTACTTGTCACCTCGGGCC
AGAGATGCTGCTCATGGCTTCCTTCTTGATGGCAAGGTTTTGTCCCTGAAGGATCTTCAGACTT
CAGAATCTTCACGGCTTGGTCCCATGACCCAACCTTTGTCCTGGCCAGTGGGGAGTACCACTGA
AACCTCAGGTGGCCCTGAGCTGAGTGATAGCCTCTCCTCAGGGGGCATTGTGGCCCAGGCTCCA
CTTCGTAAGGTTAAGAGCCGAGTCCGTGTGAGGCGGGCTAGCATCTCTGAGCCCAGTGACACAG
ACCCAGAGCTTCGAACTCTGGACCCCTCCCCGGCTGGGTGGTTTGTGCAGCAACACCGGGAACT
TGAGCTGCTGGCCAGCTTCCGGGAGCGGTTTGGCTGTGACTGGCTGCAGTATAGGAGCCACCTG
GAGACCATGGGGAGCCCCCCTCTTGCCACCATCAAGACTCCTGCCCTTGGAACCCCTCCTCTGG
ATGCCCAGAGCCTGGAGACTGCACGCAGCCCTCCAGCGATAGGGGAAGACACTAAGGAATCGCC
AGAGAAGGTGTCAGAGGAAGGCAGGGAGGAGCTCGAGCCCCACGAAGAAGAGAGGGAAGAGCAG
GAGAGAGAAGAGGGATCGAGAGAGGACCTGGGGGAGGAAGAGGAGCAGGAGCAGAAGGCAGTGG
AAGCAGAGCTCTGTCGCCCCATGTTGGTGTGTCCCTTGCAGGGAACTGAGGGCGTGCAAGGAAG
GGAGTGCTTTCTCCGGGTCACTTCTGCCCACTTGTTTGAAGTGGGACTCCAAGCAGCCCAGACT
CTGGAGCGGCTGGAGCTACAGAGCCTGGTGTCAGCTGAGCTACAGTCAGAGACTGAAAGCCAGA
GAGAACCAGGGTCTGAGGGCTCAGGCCCACCCTCTGGGGCTCCAGTTCTTGTTCTGCGCTTTTC
CTACATTTGTCCCGACCGGCAGTTGCGTTGCTATGCTGTGCTGGAGCCAGAGGCCCATGAAGCC
ATCCAGGAGCTACTTGCTGTACTGACCCCATTCACCAGCGTGAAAGACCAGCAGCCTGGGGAGG
CCAAGGACCCACAGGGGCCCAGATTCCAGTGCCTGCGCTGTAGCTGTGAGTTCAAGCCTCAGGA
GCCCAGGTTGGGACTGGAGAGTGACGACGGCTGGAAGCCTCTGTTTCAAAATACAGAATCTCCT
GTTGTGTGTCCAAACTGTGGGAGTGACCATGTGGTTCTCCTAGCTGTGTCTGGGGAAGTCCCTA
ATAGAGAGCGGAACCAGGAAGAACAATCATCAGATTCTGCCTGTGACCTTGCTGACCACAGTGG
CTGTCCCAGTGTGCCTGACGGCATCCCACCTCAGGCATCCATATCCCATGGCTGCAGCAGCTGG
AACCTCAGCCCGACCCTTGGACACACAGGTTTTCGATCTGTGGACCACCGACTCCGGCTCTTCC
TGGATGTTGAGGTGTTCAGTGACTCCGAGGAGGAGTTCCAGTGCTGCACCAAGGTGCCGGTGGT
GTTAGCAGGCCACACGAGGGAGTCTCTGTGCCTTGTGGTTGTGTCTGACCGTATGCTTTACCTG
TTGAAGGTGACAGGGCCCATCTGCGGGCCTCCTGCTAGCTGGCTTGAGCCCACCCTGGCCATTC
CTCTGCAGGATCTGAGTGGCATGGAGCTTGGCCTTGCAGGCCAGAGCCTTCGTTTAGAGTGGGC
AGCTGGGACTGGCCACTGTGTGCTGCTGCCCCGAGATGCCAGGCAGTGCCGTGCCTTCCTTGAG
GAGCTCACTGGGGTTTTGCAGTCTCTGCCTCGTACCCAGAGGAACTGCATCAGTGCTACAGAGG
AGACGGTGACCCCGCAGCATCGGCTCTGGCCATTGCTGGGGAAAGATACTTCCGCAGAGACGCC
CCAGTTTTTCTACCTTCGCGCCTTCCTGGCTGAAGGCTCCTCTACCTGTCCTGTGTCCCTGTTG
CTGACGTTGTCCACCTTGTACCTATTAGATGAAGACCCTGTAAGGTCCCATGCAGAATCTCCCC
TCCCAGTGGGGTCTGGTGAAGCCTCTGAGCAGCCTGCTCCCCAGGGGCCAGGTCCTTCTTTGCA
GGTCAGGGAGCAGCAACCACTCAGCAGTCTGAGCTCTGTGCAGCTGTATCGCACAAGCCCCTTG
GACCTGCGGCTGATCTTCTACGATGAGGTGTCTCGGCTGGAGAGTTTCTGGGCACTCCGTGTTG
TGTGTGGGGAGCAGCTGACAGACCTGCTGGCCTGGATTCGGGAGCCCTGGGAAGAGTTGTTTTC
CATTGGACTCCGGACAGTAACCCAGGAGGCTCTGGACCTCGACCGATAAGGTGTCTTCACTGAT
TTCACTGACTCGCTCTAGAGTGGCACTGCCAAAGCCCTTTCTCCTGGTGTCTGGGTCTGGCTGC
TTGCTGGCTGCTATTGGCCACTGGCTTGTGAGGCTCGAAGTGACTCACAGCTTAAGAGAAGGAC
AAGAGAACCCATCTGGCCCTTGGGTGATCTGACCAGTAGAGCAGGCTAGGTGGTCAGTGGAAAT
GTTTTTCCAGCACTTTCTCTCAGGTATCTATAAAGCTGTTCCCATGCTGGGTGTCCTGGGTGGT
ACATAGAAATGTCTCTCATAAAGCCTGCCTGCCCCCTTATTTATCTCTTCCTGGAAGCAACCTT
GTTTGCACTGAGACCCTTCTCCAGTCCTGCTCTAGCAAAGTAGGATTACTGACACAGATGTACC
CAAGCAGGTTGTGACCTATCCTGTGGCCTTGCATGGGATCACTGCCAATCAAATAGTTGGGCCC
ATTCAGATTTTTCATTCTTTTTTTTGAGACAGGGTCTCACCATGTAACATTGGCTGGTCTAGAA
CTGGCTATGTAGACCAGGCTGGCTTTGGATTCATGGAGACCTGACTGCCTCTAAGTGCTGAGAT
GAATGGCTGAGCCACCAACTGTGAAAAAATTGTGAACTTCCCCTCTTCCTAAAAGTTTACATTT
TAAATAAAGACCTACAATAAAAA

hide sequence

RefSeq Acc Id:

XM_039083376 ⟹ XP_038939304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI
mRatBN7.2	9	77,012,307 - 77,027,989 (+)	NCBI

RefSeq Acc Id:

XM_063266980 ⟹ XP_063123050

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266981 ⟹ XP_063123051

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266982 ⟹ XP_063123052

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266983 ⟹ XP_063123053

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266984 ⟹ XP_063123054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266985 ⟹ XP_063123055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266986 ⟹ XP_063123056

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266987 ⟹ XP_063123057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266988 ⟹ XP_063123058

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266989 ⟹ XP_063123059

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266990 ⟹ XP_063123060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266991 ⟹ XP_063123061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266992 ⟹ XP_063123062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266993 ⟹ XP_063123063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,476,521 (+)	NCBI

RefSeq Acc Id:

XM_063266994 ⟹ XP_063123064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,459,733 - 84,469,104 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100392	(Get FASTA)	NCBI Sequence Viewer
	NP_001419814	(Get FASTA)	NCBI Sequence Viewer
	NP_001419830	(Get FASTA)	NCBI Sequence Viewer
	NP_001419831	(Get FASTA)	NCBI Sequence Viewer
	NP_001419832	(Get FASTA)	NCBI Sequence Viewer
	NP_001419833	(Get FASTA)	NCBI Sequence Viewer
	NP_001419834	(Get FASTA)	NCBI Sequence Viewer
	NP_001419835	(Get FASTA)	NCBI Sequence Viewer
	NP_001419836	(Get FASTA)	NCBI Sequence Viewer
	NP_001419837	(Get FASTA)	NCBI Sequence Viewer
	NP_001419838	(Get FASTA)	NCBI Sequence Viewer
	NP_001419839	(Get FASTA)	NCBI Sequence Viewer
	NP_001419840	(Get FASTA)	NCBI Sequence Viewer
	XP_006245250	(Get FASTA)	NCBI Sequence Viewer
	XP_038939304	(Get FASTA)	NCBI Sequence Viewer
	XP_063123050	(Get FASTA)	NCBI Sequence Viewer
	XP_063123051	(Get FASTA)	NCBI Sequence Viewer
	XP_063123052	(Get FASTA)	NCBI Sequence Viewer
	XP_063123053	(Get FASTA)	NCBI Sequence Viewer
	XP_063123054	(Get FASTA)	NCBI Sequence Viewer
	XP_063123055	(Get FASTA)	NCBI Sequence Viewer
	XP_063123056	(Get FASTA)	NCBI Sequence Viewer
	XP_063123057	(Get FASTA)	NCBI Sequence Viewer
	XP_063123058	(Get FASTA)	NCBI Sequence Viewer
	XP_063123059	(Get FASTA)	NCBI Sequence Viewer
	XP_063123060	(Get FASTA)	NCBI Sequence Viewer
	XP_063123061	(Get FASTA)	NCBI Sequence Viewer
	XP_063123062	(Get FASTA)	NCBI Sequence Viewer
	XP_063123063	(Get FASTA)	NCBI Sequence Viewer
	XP_063123064	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68233	(Get FASTA)	NCBI Sequence Viewer
	EDL75454	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000027256
	ENSRNOP00000027256.7
	ENSRNOP00000074996
	ENSRNOP00000074996.3
	ENSRNOP00000092473
	ENSRNOP00000092473.2

RefSeq Acc Id:

NP_001100392 ⟸ NM_001106922

- UniProtKB:

B4F7D6 (UniProtKB/TrEMBL), A0A8I6AVQ2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTAPRDSVVWKLAGLLRESGDAVLSGCSTLSLLTATLQQLNRVFELYLGPWGPGQTGFVALPS
HPADSPVILQLQFLFDVLQKTLSLKLVHTPGVGLPGPIKIFPFKSLRQLELRGVPIHSLCGLRG
IYSQLETLVCNRSIQALEELLSACGGDLCSALPWLALLSADFSYNALSNLDSSLRLLSALRFLN
LSHNHIQDCKGFLMDLSELYHLDISYNHLRLVPRMGPSGAALGTLILRANELRSLQGLEQLKNL
RHLDVAYNLLEGHTELAPLWLLAELRKLYLEGNPLWFHPAHRATTAQYLSPRARDAAHGFLLDG
KVLSLKDLQQTSESSRLGPMTQPLSWPVGSTTETSGGPELSDSLSSGGIVAQAPLRKVKSRVRV
RRASISEPSDTDPELRTLDPSPAGWFVQQHRELELLASFRERFGCDWLQYRSHLETMGSPPLAT
IKTPALGTPPLDAQSLETARSPPAIGEDTKESPEKVSEEGREELEPHEEEREEQEREEGSREDL
GEEEEQEQKAVEAELCRPMLVCPLQGTEGVQGRECFLRVTSAHLFEVGLQAAQTLERLELQSLV
SAELQSETESQREPGSEGSGPPSGAPVLVLRFSYICPDRQLRCYAVLEPEAHEAIQELLAVLTP
FTSVKDQQPGEAKDPQGPRFQCLRCSCEFKPQEPRLGLESDDGWKPLFQNTESPVVCPNCGSDH
VVLLAVSGEVPNRERNQEEQSSDSACDLADHSGCPSVPDGIPPQASISHGCSSWNLSPTLGHTG
FRSVDHRLRLFLDVEVFSDSEEEFQCCTKVPVVLAGHTRESLCLVVVSDRMLYLLKVTGPICGP
PASWLEPTLAIPLQDLSGMELGLAGQSLRLEWAAGTGHCVLLPRDARQCRAFLEELTGVLQSLP
RTQRNCISATEETVTPQHRLWPLLGKDTSAETPQFFYLRAFLAEGSSTCPVSLLLTLSTLYLLD
EDPVRSHAESPLPVGSGEASEQPAPQGPGPSLQVREQQPLSSLSSVQLYRTSPLDLRLIFYDEV
SRLESFWALRVVCGEQLTDLLAWIREPWEELFSIGLRTVTQEALDLDR

hide sequence

RefSeq Acc Id:

XP_006245250 ⟸ XM_006245188

- Peptide Label:

isoform X13

- Sequence:

show sequence

MTTAPRDSVVWKLAGLLRESGDAVLSGCSTLSLLTATLQQLNRVFELYLGPWGPGQTGFVALPS
HPADSPVILQLQFLFDVLQKTLSLKLVHTPGVGLPGPIKIFPFKSLRQLELRGVPIHSLCGLRG
IYSQLETLVCNRSIQALEELLSACGGDLCSALPWLALLSADFSYNALSNLDSSLRLLSALRFLN
LSHNHIQDCKGFLMDLSELYHLDISYNHLRLVPRMGPSGAALGTLILRANELRSLQGLEQLKNL
RHLDVAYNLLEGHTELAPLWLLAELRKLYLEGNPLWFHPAHRATTAQYLSPRARDAAHGFLLDG
KVLSLKDLQTSESSRLGPMTQPLSWPVGSTTETSGGPELSDSLSSGGIVAQAPLRKVKSRVRVR
RASISEPSDTDPELRTLDPSPAGWFVQQHRELELLASFRERFGCDWLQYRSHLETMGSPPLATI
KTPALGTPPLDAQSLETARSPPAIGEDTKESPEKVSEEGREELEPHEEEREEQEREEGSREDLG
EEEEQEQKAVEAELCRPMLVCPLQGTEGVQGRECFLRVTSAHLFEVGLQAAQTLERLELQSLVS
AELQSETESQREPGSEGSGPPSGAPVLVLRFSYICPDRQLRCYAVLEPEAHEAIQELLAVLTPF
TSVKDQQPGEAKDPQGPRFQCLRCSCEFKPQEPRLGLESDDGWKPLFQNTESPVVCPNCGSDHV
VLLAVSGEVPNRERNQEEQSSDSACDLADHSGCPSVPDGIPPQASISHGCSSWNLSPTLGHTGF
RSVDHRLRLFLDVEVFSDSEEEFQCCTKVPVVLAGHTRESLCLVVVSDRMLYLLKVTGPICGPP
ASWLEPTLAIPLQDLSGMELGLAGQSLRLEWAAGTGHCVLLPRDARQCRAFLEELTGVLQSLPR
TQRNCISATEETVTPQHRLWPLLGKDTSAETPQFFYLRAFLAEGSSTCPVSLLLTLSTLYLLDE
DPVRSHAESPLPVGSGEASEQPAPQGPGPSLQVREQQPLSSLSSVQLYRTSPLDLRLIFYDEVS
RLESFWALRVVCGEQLTDLLAWIREPWEELFSIGLRTVTQEALDLDR

hide sequence

Ensembl Acc Id:

ENSRNOP00000074996 ⟸ ENSRNOT00000080524

Ensembl Acc Id:

ENSRNOP00000027256 ⟸ ENSRNOT00000027256

RefSeq Acc Id:	XP_038939304 ⟸ XM_039083376
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AVQ2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092473 ⟸ ENSRNOT00000115992

RefSeq Acc Id:	XP_063123063 ⟸ XM_063266993
- Peptide Label:	isoform X16
- UniProtKB:	A0A8I6AVQ2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123050 ⟸ XM_063266980
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K9H2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123053 ⟸ XM_063266983
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063123052 ⟸ XM_063266982
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K9H2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123054 ⟸ XM_063266984
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K9H2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123051 ⟸ XM_063266981
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K9H2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123055 ⟸ XM_063266985
- Peptide Label:	isoform X6
- UniProtKB:	A0A0G2K9H2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123056 ⟸ XM_063266986
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063123057 ⟸ XM_063266987
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063123058 ⟸ XM_063266988
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063123059 ⟸ XM_063266989
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063123061 ⟸ XM_063266991
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063123060 ⟸ XM_063266990
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063123062 ⟸ XM_063266992
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_063123064 ⟸ XM_063266994
- Peptide Label:	isoform X17

Protein Domains

LKB1 serine/threonine kinase interacting protein PLEKHM2 PH Serine/threonine-protein kinase 11-interacting

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B4F7D6-F1-model_v2	AlphaFold	B4F7D6	1-1072	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696785

Promoter ID:

EPDNEW_R7309

Type:

multiple initiation site

Name:

Stk11ip_1

Description:

serine/threonine kinase 11 interacting protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	82,718,726 - 82,718,786	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305046	AgrOrtholog
BioCyc Gene	G2FUF-27058	BioCyc
Ensembl Genes	ENSRNOG00000020107	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027256	ENTREZGENE
	ENSRNOT00000027256.8	UniProtKB/TrEMBL
	ENSRNOT00000080524	ENTREZGENE
	ENSRNOT00000080524.3	UniProtKB/TrEMBL
	ENSRNOT00000115992	ENTREZGENE
	ENSRNOT00000115992.2	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	LIP1_N	UniProtKB/TrEMBL
	PH_PLEKHM2	UniProtKB/TrEMBL
	PH_S11IP	UniProtKB/TrEMBL
KEGG Report	rno:301535	UniProtKB/TrEMBL
NCBI Gene	301535	ENTREZGENE
PANTHER	NISCHARIN RELATED	UniProtKB/TrEMBL
	SERINE/THREONINE-PROTEIN KINASE 11-INTERACTING PROTEIN	UniProtKB/TrEMBL
Pfam	LIP1	UniProtKB/TrEMBL
	PH_PLEKHM2	UniProtKB/TrEMBL
	PH_S11IP	UniProtKB/TrEMBL
	PH_S11IP_C	UniProtKB/TrEMBL
PhenoGen	Stk11ip	PhenoGen
PROSITE	LRR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020107	RatGTEx
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	Outer arm dynein light chain 1	UniProtKB/TrEMBL
UniProt	A0A0G2K9H2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AVQ2	ENTREZGENE, UniProtKB/TrEMBL
	B4F7D6	ENTREZGENE, UniProtKB/TrEMBL
	F7F669	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Stk11ip	serine/threonine kinase 11 interacting protein	Stk11ip_predicted	serine/threonine kinase 11 interacting protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Stk11ip_predicted	serine/threonine kinase 11 interacting protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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