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Gene: Pknox1 (PBX/knotted 1 homeobox 1) Rattus norvegicus

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Symbol:

Pknox1

Name:

PBX/knotted 1 homeobox 1

RGD ID:

1305003

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in angiogenesis. Predicted to act upstream of or within camera-type eye development; hemopoiesis; and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription regulator complex. Orthologous to human PKNOX1 (PBX/knotted 1 homeobox 1); INTERACTS WITH (+)-schisandrin B; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

homeobox protein PKNOX1; LOC294322; MGC109503; Pbx/knotted 1 homeobox

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PKNOX1 (PBX/knotted 1 homeobox 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Pknox1 (Pbx/knotted 1 homeobox)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pknox1 (PBX/knotted 1 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PKNOX1 (PBX/knotted 1 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PKNOX1 (PBX/knotted 1 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pknox1 (PBX/knotted 1 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PKNOX1 (PBX/knotted 1 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PKNOX1 (PBX/knotted 1 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pknox1 (PBX/knotted 1 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pknox1 (PBX/knotted 1 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ECHDC3 (enoyl-CoA hydratase domain containing 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PKNOX1 (PBX/knotted 1 homeobox 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pknox1 (Pbx/knotted 1 homeobox)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pknox1.1 (pbx/knotted 1 homeobox 1.1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	pknox1.2 (pbx/knotted 1 homeobox 1.2)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CUP9	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	TOS8	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	TOS8	Alliance	DIOPT (OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	pknox1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	9,664,120 - 9,706,328 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	9,664,312 - 9,706,349 (+)	Ensembl				GRCr8
mRatBN7.2	20	9,662,866 - 9,705,030 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	9,662,899 - 9,703,727 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	10,380,973 - 10,402,956 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	9,742,151 - 9,764,138 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	10,211,818 - 10,233,814 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	10,331,608 - 10,358,922 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	10,334,308 - 10,358,922 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	12,519,709 - 12,546,894 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	10,019,509 - 10,041,680 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	11,194,122 - 11,216,038 (+)	NCBI		Celera
RGSC_v3.1	20	10,019,738 - 10,041,906 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP,ISO)

cantharidin (ISO)

cobalt dichloride (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

monocrotaline (ISO)

morphine (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

triptonide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (IBA,ISO)

camera-type eye development (ISO)

erythrocyte differentiation (ISO)

hemopoiesis (ISO)

positive regulation of transcription by RNA polymerase II (IBA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA,ISO)

T cell differentiation (ISO)

Cellular Component

cytoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

transcription regulator complex (IEA,ISO)

Molecular Function

chromatin binding (IEA,ISO)

DNA binding (IEA,ISO)

DNA-binding transcription factor activity (IBA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA,ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,IEA,ISO)

sequence-specific DNA binding (IEA,ISO)

sequence-specific double-stranded DNA binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9405651	PMID:10373562	PMID:10381567	PMID:14764653	PMID:15087118	PMID:16314502	PMID:16847320	PMID:17049510	PMID:17875925	PMID:17904118	PMID:22780989	PMID:30338914

Genomics

Comparative Map Data

Pknox1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	9,664,120 - 9,706,328 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	9,664,312 - 9,706,349 (+)	Ensembl				GRCr8
mRatBN7.2	20	9,662,866 - 9,705,030 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	9,662,899 - 9,703,727 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	10,380,973 - 10,402,956 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	9,742,151 - 9,764,138 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	10,211,818 - 10,233,814 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	10,331,608 - 10,358,922 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	10,334,308 - 10,358,922 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	12,519,709 - 12,546,894 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	10,019,509 - 10,041,680 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	11,194,122 - 11,216,038 (+)	NCBI		Celera
RGSC_v3.1	20	10,019,738 - 10,041,906 (+)	NCBI
Cytogenetic Map	20	p12	NCBI

PKNOX1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	42,974,562 - 43,033,931 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	42,974,328 - 43,034,475 (+)	Ensembl			hg38	GRCh38
GRCh37	21	44,394,672 - 44,454,041 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	43,267,712 - 43,326,757 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	21	43,267,711 - 43,326,757	NCBI
Celera	21	29,545,263 - 29,606,363 (+)	NCBI		Celera
Cytogenetic Map	21	q22.3	NCBI
HuRef	21	29,842,641 - 29,872,199 (+)	NCBI		HuRef
CHM1_1	21	43,955,570 - 44,014,595 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	41,363,445 - 41,424,980 (+)	NCBI		T2T-CHM13v2.0

Pknox1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	31,783,697 - 31,826,665 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	31,783,708 - 31,826,667 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	31,564,722 - 31,607,693 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	31,564,734 - 31,607,693 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	31,701,718 - 31,744,638 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	31,312,406 - 31,336,394 (+)	NCBI		MGSCv36	mm8
Celera	17	32,499,119 - 32,525,010 (+)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	16.78	NCBI

Pknox1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	38,948,200 - 38,982,984 (-)	Ensembl
ChiLan1.0	NW_004955407	38,949,060 - 38,982,984 (-)	NCBI	ChiLan1.0	ChiLan1.0

PKNOX1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	39,031,280 - 39,090,577 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	33,883,591 - 33,943,402 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	29,282,883 - 29,341,998 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	42,621,832 - 42,650,818 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	42,622,065 - 42,647,329 (+)	Ensembl			panPan2	panpan1.1

PKNOX1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	37,189,753 - 37,223,844 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	37,192,992 - 37,220,926 (+)	NCBI			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	36,312,330 - 36,373,694 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	36,740,626 - 36,763,495 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	31	36,571,573 - 36,633,643 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	36,551,944 - 36,613,396 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	37,048,036 - 37,110,892 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pknox1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	36,410,806 - 36,451,774 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	1,015,954 - 1,055,215 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	1,018,414 - 1,055,221 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PKNOX1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	206,167,156 - 206,195,468 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	206,159,264 - 206,195,471 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PKNOX1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	86,857,155 - 86,882,365 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	86,856,632 - 86,881,550 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	14,762,697 - 14,870,613 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pknox1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	27,696,185 - 27,754,138 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	27,696,257 - 27,754,162 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pknox1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	2,255,218 - 2,296,755 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pknox1
296 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	35
Interacting mature miRNAs:	40
Transcripts:	ENSRNOT00000001566
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24164241	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1581577	Pur15	Proteinuria QTL 15	4.38	0.0002	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	20	8043920	15089182	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26128279	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3626323	10078622	Rat
631265	Iresp1	Immunoglobin response QTL1	8.3		blood anti-double stranded DNA antibody amount (VT:0004762)	serum anti-DNA antibody level (CMO:0001533)	20	9041099	11115921	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1	14100378	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001566 ⟹ ENSRNOP00000001566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	9,685,888 - 9,706,349 (+)	Ensembl
mRatBN7.2 Ensembl	20	9,683,496 - 9,703,727 (+)	Ensembl
Rnor_6.0 Ensembl	20	10,334,308 - 10,358,922 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100490 ⟹ ENSRNOP00000095062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	9,662,899 - 9,702,286 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102665 ⟹ ENSRNOP00000076994

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	9,689,133 - 9,706,349 (+)	Ensembl
mRatBN7.2 Ensembl	20	9,687,828 - 9,702,290 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107714 ⟹ ENSRNOP00000079378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	9,664,312 - 9,703,595 (+)	Ensembl
mRatBN7.2 Ensembl	20	9,662,952 - 9,702,286 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118796 ⟹ ENSRNOP00000085831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	9,683,770 - 9,702,290 (+)	Ensembl

RefSeq Acc Id:

NM_001013074 ⟹ NP_001013092

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	9,681,686 - 9,703,596 (+)	NCBI
mRatBN7.2	20	9,680,376 - 9,702,291 (+)	NCBI
Rnor_6.0	20	10,334,302 - 10,356,189 (+)	NCBI
Rnor_5.0	20	12,519,709 - 12,546,894 (+)	NCBI
RGSC_v3.4	20	10,019,509 - 10,041,680 (+)	RGD
Celera	20	11,194,122 - 11,216,038 (+)	RGD

Sequence:

show sequence

GATTGGCACCCAGACACCATTCGCTTCTCACTCAAGATGATCTGATGTCTGAAGTGAACTCTCA
TCAACCATGATGGCTACACAGACGCTAAGTATAGACAGCTATCAAGATGGACAACAAATGCAGG
TGGTCACTGAGTTGAAAACAGAGCAGGATCCCAACTGCTCTGACCCGGATGCAGAAGGAGTGAG
TCCTCCTCCCATCGAGTCTCAGACCCCGATGGATGCCGACAAGCAGGCCATTTATAGGCACCCG
CTATTTCCATTGCTAGCTTTGCTGTTTGAGAAATGTGAGCAGTCCACACAGGGATCAGAAGGCA
CGACGTCCGCCAGCTTCGATGTGGACATTGAGAACTTTGTCAGGAAGCAAGAAAAGGACGGGAA
GCCCTTCTTCTGTGAAGATCCGGAAACAGACAACTTAATGGTGAAAGCAATCCAGGTCCTGCGT
ATTCATCTTCTTGAACTGGAGAAGGTGAACGAGCTCTGTAAAGACTTCTGTAGTCGGTACATTG
CCTGTCTGAAGACAAAAATGAACAGCGAGACCCTGCTGAGTGGGGAGCCTGGAAGTCCGTACTC
CCCAGTGCAGTCCCAGCAGATTCAAAGCGCCATCACAGGCACTCTCAGCCCCCAGGGAATCGTG
GTGCCAGCATCAGCCCTGCAACAGGGGAATGTAACCATGGCAACAGTGGCAGGTGGCACAGTGT
ACCAGCCTGTCACCGTCGTCACTCCACAAGGCCAAGTGGTCACGCAGGCATTATCTCCTGGGAC
AATTAGGATCCAGAACTCGCAGCTTCAATTGCAGTTGAACCAGGATCTCAGCATCTTGCATCAA
GAGGACGGCTCCTCCAAGAACAAGAGGGGCGTCCTGCCGAAGCACGCCACCAACGTGATGCGTT
CCTGGCTCTTCCAGCACATAGGGCATCCCTACCCCACCGAGGATGAGAAGAAGCAGATTGCTGC
TCAGACAAACTTGACACTGCTTCAAGTCAACAACTGGTTCATCAATGCCCGAAGACGGATTCTC
CAGCCAATGTTGGATTCCAGCTGTTCAGAGACTCCAAAAACAAAGAAAAAGCCTGCTCAGAACA
GGCCAGTTCAGAGGTTTTGGCCGGATTCTCTTGCATCAGGAGTGGCACAAGCAACACCCGGAGA
GCTCGCCATGTCGGAAGGTGCCGTTGTGACCATCACCACACCTGTAAACATGAATGTGGACAGC
CTTCAGTCCCTGTCCTCAGACGGGGCCACCCTGGCGGTACAGCAGGTCATGATGGCGGGGCAGA
GTGAGGACGAGTCGGTGGATAGCACAGAAGATGAGGGTGGCGCCCTGGCACCCACACACATCAG
CGGGCTGGTGCTGGAGAACAGCGACTCCCTTCAGTAGGAACGGAGTGGAACGGCCAGTGTGGAG
CCTGGACGCCGGACTCTTTACTGTTTGCACAGCAAACATTTTACAGTTTTCTTTGTAACATGTT
TTATATGTAGATATAGAAGAGTGCACTTTTGTATCTCACAGCTTCAAGACGTCTTCGCTGGTGC
AGCAGCTTCCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008772808 ⟹ XP_008771030

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	9,675,181 - 9,706,328 (+)	NCBI
mRatBN7.2	20	9,677,657 - 9,705,014 (+)	NCBI
Rnor_6.0	20	10,331,609 - 10,356,291 (+)	NCBI

Sequence:

show sequence

TCTACCACTGAGCCAAATCCCCAACCCCAAGACAAGAATATTTAACTTAGTTGCCACAGTGCAC
TCACCCTGTCTTCTGAGTGGTTGTTCGTACACTGCTCCTTTAAAGTGTTTTCCTCCCCCTCCCA
GTACAGACAGCTCATAGGAACATGGTGCTATGATGGTAGGGTTTGGGGGCCATGGTTCCTTTTT
TGTCCCCCACAGTCCTTCTGCTTACCAGCTGTTGACTCAGTCCTCCTCTTCCTGATCCTGAGGA
AGTTCTTAACATGGTTGGCACTCCCCCACCATGGCCCCCTGTCTTATGTCGAGTAAGCAGTTCT
ATTCTGATTCTCACATCATACTGTGCCCTCTTATCCTCTGACCTCCAGGTTGTCCCCTCCCACA
CTGTCTTCTGTCTTCCTTTTGGTCTCTTCAGTCCCTTAGCTTCATATCGTGTGTTACGTGCATT
TGCTCTCTCGGGCTGCGGTGCCAAATGACCACAAGCTGGTCTACTAAACTCACCACCACCACCC
TCCCACCCCCGGAAATGGGCTCTCTCATGGTCCTAGAGCCCGTGGTCAAGGTGTAGACAAGACT
ACTCTCCCTCTGAAGGCTCTGGTGTCAGTCCTTCCCTCTTGCAGCTTCTGGTGACCGGAGCAGT
ACATAGGCTTCCACTTCAGTGTGTACCGCCATCTTGCCATGGTGCTGGGTGTTAGAGTGGGACG
TGTCTTGTGGAGGACTCGGCTTATCTCCATGTGTACCCCCTGTACCCTGATGATGACCAAGTGA
TTCCAGCCCAGGCTCCTCTGCTCAGTTTCCGGGAAGGTATCTTGAGACCCGTCTGCAGCCTGAG
ATGTCCTGCTTTGTCTCCCTCCCAAGCCACGGAGCTGTTCTTAGCTGTTTGCTCACCTCGGGAC
CCACGGCTCTGTTCTTCCAGGTGCTCAGACACCATTCGCTTCTCACTCAAGATGATCTGATGTC
TGAAGTGAACTCTCATCAACCATGATGGCTACACAGACGCTAAGTATAGACAGCTATCAAGATG
GACAACAAATGCAGGTGGTCACTGAGTTGAAAACAGAGCAGGATCCCAACTGCTCTGACCCGGA
TGCAGAAGGAGTGAGTCCTCCTCCCATCGAGTCTCAGACCCCGATGGATGCCGACAAGCAGGCC
ATTTATAGGCACCCGCTATTTCCATTGCTAGCTTTGCTGTTTGAGAAATGTGAGCAGTCCACAC
AGGGATCAGAAGGCACGACGTCCGCCAGCTTCGATGTGGACATTGAGAACTTTGTCAGGAAGCA
AGAAAAGGACGGGAAGCCCTTCTTCTGTGAAGATCCGGAAACAGACAACTTAATGGTGAAAGCA
ATCCAGGTCCTGCGTATTCATCTTCTTGAACTGGAGAAGGTGAACGAGCTCTGTAAAGACTTCT
GTAGTCGGTACATTGCCTGTCTGAAGACAAAAATGAACAGCGAGACCCTGCTGAGTGGGGAGCC
TGGAAGTCCGTACTCCCCAGTGCAGTCCCAGCAGATTCAAAGCGCCATCACAGGCACTCTCAGC
CCCCAGGGAATCGTGGTGCCAGCATCAGCCCTGCAACAGGGGAATGTAACCATGGCAACAGTGG
CAGGTGGCACAGTGTACCAGCCTGTCACCGTCGTCACTCCACAAGGCCAAGTGGTCACGCAGGC
ATTATCTCCTGGGACAATTAGGATCCAGAACTCGCAGCTTCAATTGCAGTTGAACCAGGATCTC
AGCATCTTGCATCAAGAGGACGGCTCCTCCAAGAACAAGAGGGGCGTCCTGCCGAAGCACGCCA
CCAACGTGATGCGTTCCTGGCTCTTCCAGCACATAGGGCATCCCTACCCCACCGAGGATGAGAA
GAAGCAGATTGCTGCTCAGACAAACTTGACACTGCTTCAAGTCAACAACTGGTTCATCAATGCC
CGAAGACGGATTCTCCAGCCAATGTTGGATTCCAGCTGTTCAGAGACTCCAAAAACAAAGAAAA
AGCCTGCTCAGAACAGGCCAGTTCAGAGGTTTTGGCCGGATTCTCTTGCATCAGGAGTGGCACA
AGCAACACCCGGAGAGCTCGCCATGTCGGAAGGTGCCGTTGTGACCATCACCACACCTGTAAAC
ATGAATGTGGACAGCCTTCAGTCCCTGTCCTCAGACGGGGCCACCCTGGCGGTACAGCAGGTCA
TGATGGCGGGGCAGAGTGAGGACGAGTCGGTGGATAGCACAGAAGATGAGGGTGGCGCCCTGGC
ACCCACACACATCAGCGGGCTGGTGCTGGAGAACAGCGACTCCCTTCAGTAGGAACGGAGTGGA
ACGGCCAGTGTGGAGCCTGGACGCCGGACTCTTTACTGTTTGCACAGCAAACATTTTACAGTTT
TCTTTGTAACATGTTTTATATGTAGATATAGAAGAGTGCACTTTTGTATCTCACAGCTTCAAGA
CGTCTTCGCTGGTGCAGCAGCTTCCTTCAGATGTGCGTGTATGGGTTTTTAATGCTAGAAACGT
GATGAGTGGCCCCTGCCCCTTGAGTCCCTGACGAGATTAAGGAACAGTGCTGCCATTTTCTAAA
AAA

hide sequence

RefSeq Acc Id:

XM_039098544 ⟹ XP_038954472

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	9,664,184 - 9,706,328 (+)	NCBI
mRatBN7.2	20	9,662,872 - 9,705,030 (+)	NCBI

RefSeq Acc Id:

XM_039098545 ⟹ XP_038954473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	9,664,120 - 9,706,328 (+)	NCBI
mRatBN7.2	20	9,662,866 - 9,705,014 (+)	NCBI

RefSeq Acc Id:

XM_039098546 ⟹ XP_038954474

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	9,664,184 - 9,706,328 (+)	NCBI
mRatBN7.2	20	9,662,872 - 9,705,014 (+)	NCBI

RefSeq Acc Id:

XM_039098547 ⟹ XP_038954475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	9,664,184 - 9,706,328 (+)	NCBI
mRatBN7.2	20	9,662,872 - 9,705,014 (+)	NCBI

RefSeq Acc Id:

XM_039098548 ⟹ XP_038954476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	9,664,184 - 9,706,328 (+)	NCBI
mRatBN7.2	20	9,662,872 - 9,705,014 (+)	NCBI

RefSeq Acc Id:

XM_039098549 ⟹ XP_038954477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	9,664,184 - 9,706,328 (+)	NCBI
mRatBN7.2	20	9,662,872 - 9,705,014 (+)	NCBI

RefSeq Acc Id:

XM_063279041 ⟹ XP_063135111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	9,664,177 - 9,706,328 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013092	(Get FASTA)	NCBI Sequence Viewer
	NP_001421544	(Get FASTA)	NCBI Sequence Viewer
	NP_001421545	(Get FASTA)	NCBI Sequence Viewer
	XP_008771030	(Get FASTA)	NCBI Sequence Viewer
	XP_038954472	(Get FASTA)	NCBI Sequence Viewer
	XP_038954473	(Get FASTA)	NCBI Sequence Viewer
	XP_038954474	(Get FASTA)	NCBI Sequence Viewer
	XP_038954475	(Get FASTA)	NCBI Sequence Viewer
	XP_038954476	(Get FASTA)	NCBI Sequence Viewer
	XP_038954477	(Get FASTA)	NCBI Sequence Viewer
	XP_063135111	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91397	(Get FASTA)	NCBI Sequence Viewer
	EDL97019	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001566
	ENSRNOP00000001566.7
	ENSRNOP00000076994.1
	ENSRNOP00000079378
	ENSRNOP00000079378.1

RefSeq Acc Id:

NP_001013092 ⟸ NM_001013074

- UniProtKB:

Q5BJP1 (UniProtKB/TrEMBL), A0A8I6G373 (UniProtKB/TrEMBL), A0A8I6AIY1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSDPDAEGVSPPPIESQTPMDADKQAIYRHPLF
PLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKDGKPFFCEDPETDNLMVKAIQVLRIH
LLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEPGSPYSPVQSQQIQSAITGTLSPQGIVVP
ASALQQGNVTMATVAGGTVYQPVTVVTPQGQVVTQALSPGTIRIQNSQLQLQLNQDLSILHQED
GSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQP
MLDSSCSETPKTKKKPAQNRPVQRFWPDSLASGVAQATPGELAMSEGAVVTITTPVNMNVDSLQ
SLSSDGATLAVQQVMMAGQSEDESVDSTEDEGGALAPTHISGLVLENSDSLQ

hide sequence

RefSeq Acc Id:	XP_008771030 ⟸ XM_008772808
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJP1 (UniProtKB/TrEMBL), A0A8I6G373 (UniProtKB/TrEMBL), A0A8I6AIY1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSDPDAEGVSPPPIESQTPMDADKQAIYRHPLF PLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKDGKPFFCEDPETDNLMVKAIQVLRIH LLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEPGSPYSPVQSQQIQSAITGTLSPQGIVVP ASALQQGNVTMATVAGGTVYQPVTVVTPQGQVVTQALSPGTIRIQNSQLQLQLNQDLSILHQED GSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQP MLDSSCSETPKTKKKPAQNRPVQRFWPDSLASGVAQATPGELAMSEGAVVTITTPVNMNVDSLQ SLSSDGATLAVQQVMMAGQSEDESVDSTEDEGGALAPTHISGLVLENSDSLQ hide sequence

Ensembl Acc Id:

ENSRNOP00000001566 ⟸ ENSRNOT00000001566

RefSeq Acc Id:	XP_038954473 ⟸ XM_039098545
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038954472 ⟸ XM_039098544
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038954475 ⟸ XM_039098547
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJP1 (UniProtKB/TrEMBL), A0A8I6G373 (UniProtKB/TrEMBL), A0A8I6AIY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954474 ⟸ XM_039098546
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJP1 (UniProtKB/TrEMBL), A0A8I6G373 (UniProtKB/TrEMBL), A0A8I6AIY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954476 ⟸ XM_039098548
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJP1 (UniProtKB/TrEMBL), A0A8I6G373 (UniProtKB/TrEMBL), A0A8I6AIY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954477 ⟸ XM_039098549
- Peptide Label:	isoform X1
- UniProtKB:	Q5BJP1 (UniProtKB/TrEMBL), A0A8I6G373 (UniProtKB/TrEMBL), A0A8I6AIY1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000085831 ⟸ ENSRNOT00000118796

Ensembl Acc Id:

ENSRNOP00000095062 ⟸ ENSRNOT00000100490

Ensembl Acc Id:

ENSRNOP00000079378 ⟸ ENSRNOT00000107714

Ensembl Acc Id:

ENSRNOP00000076994 ⟸ ENSRNOT00000102665

RefSeq Acc Id:	XP_063135111 ⟸ XM_063279041
- Peptide Label:	isoform X2

Protein Domains

Homeobox

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5BJP1-F1-model_v2	AlphaFold	Q5BJP1	1-436	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305003	AgrOrtholog
BioCyc Gene	G2FUF-4307	BioCyc
Ensembl Genes	ENSRNOG00000001184	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001566	ENTREZGENE
	ENSRNOT00000001566.8	UniProtKB/TrEMBL
	ENSRNOT00000102665.2	UniProtKB/TrEMBL
	ENSRNOT00000107714	ENTREZGENE
	ENSRNOT00000107714.2	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7323315	IMAGE-MGC_LOAD
InterPro	Homeobox	UniProtKB/TrEMBL
	Homeobox_KN_domain	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
	PKNOX/Meis_N	UniProtKB/TrEMBL
	TALE_homeobox	UniProtKB/TrEMBL
KEGG Report	rno:294322	UniProtKB/TrEMBL
MGC_CLONE	MGC:109503	IMAGE-MGC_LOAD
NCBI Gene	294322	ENTREZGENE
PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	UniProtKB/TrEMBL
Pfam	Homeobox_KN	UniProtKB/TrEMBL
	Meis_PKNOX_N	UniProtKB/TrEMBL
PhenoGen	Pknox1	PhenoGen
PROSITE	HOMEOBOX_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001184	RatGTEx
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
UniProt	A0A8I5Y0K7_RAT	UniProtKB/TrEMBL
	A0A8I6AIY1	ENTREZGENE
	A0A8I6G373	ENTREZGENE, UniProtKB/TrEMBL
	F7F6P5_RAT	UniProtKB/TrEMBL
	Q5BJP1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-09	Pknox1	PBX/knotted 1 homeobox 1	Pknox1	Pbx/knotted 1 homeobox	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Pknox1	Pbx/knotted 1 homeobox	Pknox1_predicted	Pbx/knotted 1 homeobox (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Pknox1_predicted	Pbx/knotted 1 homeobox (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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